1M6XC

Flpe-holliday junction complex
Total Genus 125
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
50100150200250300350300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (12-22)TIV1 (22-25)AH4 (34-47)AH3 (28-32)EMPTYAH5 (54-67)S2 (76-81)S1 (69-71)TIV3 (71-74)TI1 (72-75)TI2 (97-100)O1 (81-83)TIV4 (83-86)AH6 (86-96)AH8 (137-148)TI6 (222-225)O2 (148-150)TI3 (165-168)TIV5 (166-169)AH10 (172-188)TIV9 (291-294)S4 (198-208)AH11 (192-197)TIV6 (208-211)AH12 (241-250)AH14 (305-318)S5 (212-219)TIV8 (219-222)AH18 (380-399)AH16 (337-342)AH17 (352-359)S6 (228-232)O4 (374-376)3H1 (294-297)AH13 (278-290)TIV11 (332-335)TIV12 (360-363)S9 (362-365)TI7 (366-369)S10 (370-373)TIV2 (23-26)S7 (255-256)S8 (272-273)TII1 (298-301)TIV10 (302-305)AH15 (321-328)TIV13 (365-368)AH1 (3-9)TI'1 (47-50)AH9 (154-164)TVIII1 (237-240)O3 (261-263)S3 (101-106)AH7 (116-127)Updating...
connected with : NaN
molecule tags Ligase, lyase/dna
source organism Saccharomyces cerevisiae
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
molecule keywords Symmetrized FRT site
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
3NKHA 3MGVA 1NZBA 1PVPA 1F44A 1AIHA 1Q3UA 1KBUA 1AE9A 5DCFA 1OUQA 5DORA 1XNSA 1P4EC 3UXUA 1P4EA 3CRXA 4DKSA 1Q3VA 1DRGA 2HOIA 1CRXA 1MA7A 1FLOA 2A3VA 1Z19A 1PVRA 2HOFA 4A8EA 1Z1BA 1M6XC 2CRXA 5CRXA 5C6KA 1M6XA 3VCFA 4CRXA 3C29A 1P7DA 1XO0A 1A0PA 3C28A 1PVQA
chains in the Genus database with same CATH superfamily
3CW8X 1XRAA 3IPLA 1UWDA 1QWIA 3IEUA 2F4VC 1NYEA 3NI2A 1K0RA 1OUQA 1XNSA 3R9WA 4JI4C 3PBKA 1N32C 3UZ0A 1XMOC 2KZFA 4RLFA 4KTTA 5LMNC 4RVOA 3O2EA 3EQ6A 4NOZA 2HHHC 3DHVA 4DUYC 4B3RC 3IMLA 4I9FA 3TQIA 2YWBA 4D57A 1USPB 3GR1A 2P20A 4NXNC 3A26A 4MTNA 2M5HA 3NPDA 1PVPA 5BR8C 2ZM6C 4DR6C 4E0GA 1HNWC 2P2JA 3EERA 1P4EA 4JI7C 2DHMA 2OBVA 2E7GA 1MXBA 3AY0A 4PUGA 1P7DA 4LF5C 2Y27A 2NCLA 2VQFC 5JRHA 4NDNA 4DUZC 4E0PA 2EGTA 2WD9A 2MCQA 4G37A 1PG3A 2UUBC 2WP0C 1Q3VA 2PT7G 4FUQA 1USPA 1MA7A 3S82A 1LQLA 3RG2A 4JYAC 1M6XA 4GKKC 2P2BA 4PUHA 4D4IA 5AE1A 3LNOA 3A9VA 2BH1X 4RM2A 3T1YC 3NKHA 4BC7A 2E0GA 4GS5A 3PESA 4DR7C 5BSMA 1MKYA 1GPMA 1VLAA 5IWAC 4LFCC 2UUCC 3CRXA 3T1HC 4D4GA 2HJGA 2YWCA 1WF3A 2OPLB 4LE5A 1FJGC 2E8EA 4DV3C 3GKUA 4RVNA 4K0KC 1NZBA 5BSUA 5T8TA 4RM3A 3TUFA 4IR7A 4L4QA 5KYVA 2Y4NA 2ATWA 1O9TA 4ODJA 3A4IA 1KKGA 1BA3A 5K85A 1XNRC 1N34C 4R0MA 3RV2A 2DYJA 3C28A 2VZEA 2CY1A 3FCCA 3ETOA 4FTFA 5BSTA 1V26A 1XRBA 2YCBA 2OPLA 4PHTA 1MDBA 1MXAA 1AMUA 4DKSA 4ACOA 1HNXC 4OX9C 2QVXX 3L8CA 5BSRA 4A8EA 4ISBA 4D56A 4LF4C 3C29A 3CQ2A 2QVZX 4DR5C 3MGVA 3TR3A 1F44A 1XS3A 2KZ0A 3LNVA 2Y4OA 1YJ7A 4DV2C 5BSWA 3UX3A 5CZVA 4DR1C 4JV5C 2D27A 1ML8A 1RY2A 4LF7C 4FUTA 4ZJZA 3IEVA 3E7WA 5BUQA 1VEHA 4DR4C 4YY3C 3CW9A 1P4EC 5KEIA 5LCIA 4RLQA 2HOIA 1CRXA 5AE2A 2D1RA 4LF9C 1XHJA 4I9GA 4OYCA 3CJEA 3GR0A 4XX2A 4DV7C 3C5EA 2PN2A 1XO0A 4DV4C 4LF8C 4WV3A 2YX1A 2D1SA 4JI1C 3J81D 2JNVA 4LF6C 4NXMC 1IBLC 1T5HX 3A25A 4E10A 2E8FA 3SO4A 5A2QD 5CZXA 3R44A 5CRXA 2CRXA 4LFAC 5ADZA 4X65C 3LUSA 4DR2C 4E0YA 5KYTA 4G36A 2E5LC 1N36C 1P7LA 4BCAA 4DV0C 3H2TA 4PROC 5A1IA 1PA4A 4B3TC 5IT9D 1XMQC 2P02A 4JI5C 2CU6A 2HOFA 3NYQA 3L95X 1RG9A 5AE3A 3G7SA 4GXQA 2KDNA 2P2MA 3LGXA 4DCUA 4DV6C 5BUSA 1T5DX 3N2QA 1JOSA 4IZ6A 1N2FA 4GKJC 3CQ1A 5DV9A 4DV1C 1O90A 1FLOA 1MD9A 2DPLA 1Z19A 5BURA 1Z1BA 4GXRA 3I07A 4YHHC 1HNZC 1XRCA 2OO4A 4DR3C 2VSQA 4X66C 2MMAB 1I94C 3AF5A 3UX2A 1AIHA 1Q3UA 1KBUA 2AYAA 5DCFA 1IB8A 1TH5A 5DORA 3KXWA 3GPCA 3FCEA 1IBKC 4E0ZA 1ULTA 2QW0X 4KTVA 4KHPC 4X64C 4JI6C 4DG8A 1V25A 1UKKA 2VQEC 2ZZMA 2UXDC 4X62C 4LFBC 3VCFA 4CRXA 3DAYA 1L2FA 2QL8A 3K6RA 1O93A 2UXCC 2V6EA 2PROA 3UEBA 1PVQA 2ZZNA 3VNQA 1XNQC 3OTOC 3AF6A 4OXIA 1AE9A 4ZLPA 5IFIA 1WH9A 3UXUA 3DLPX 2QVYX 3NYRA 4R1MA 4DCVA 1DRGA 4L2ZA 1ZB9A 4DG9A 3PROC 1NY8A 2D28C 2D1QA 4B3SC 2CXCA 5A1GA 1PG4A 4G1IA 1HR0C 1A0PA 2UU9C 3E7XA 4JI0C 5FLXD 1N33C 2P2QA 2MM9A 4AQYC 3N54B 2Z51A 3R9XA 1ZB8A 4JI3C 1HH2P 4L7IA 2UXBC 4JI2C 3UOWA 2ONFA 5BSVA 3A9UA 4MH4A 1IBMC 1M6XC 1LCIA 5K8FA 3VNRA 5C6KA 4PUIA 1J5EC 4R1LA 3B7WA 2E8CA 1EGAA 1WCJA 2D1TA 5E7QA 2P2FA 3I08A 5H9UA 4DWPA 3JAMD 3VNSA 1MDFA 4TPSB 1PVRA 3LAXA 1FUGA 2XR1A 4EATA 1QM4A 4WS9A 3T79A 4K0BA 4B3MC 4HPVA 4DV5C 5LMUC 4DCTA 2V7BA 2BJOA 3TDEA 4BSZA 1PU1A 4F43A 3J80D 2ASBA 4U5YD 4E0JA 5A19A 2D7VA 5T8SA 3ETCA 4BBYA 2A3VA 2M5OA 4BC9A 2UUAC 1MXCA 3SQIA 4DCSA 4JM1A 4PZPA 1O92A 5GTDA 4JI8C 4F41A 1V60A 2JMPA 4RMNA 3CQ3A
chains in the Genus database with same CATH topology
3NKHA 3MGVA 1NZBA 1PVPA 1F44A 1AIHA 1Q3UA 1KBUA 1AE9A 5DCFA 1OUQA 5DORA 1XNSA 1P4EC 3UXUA 1P4EA 3CRXA 4DKSA 1Q3VA 1DRGA 2HOIA 1CRXA 1MA7A 1FLOA 2A3VA 1Z19A 1PVRA 2HOFA 4A8EA 1Z1BA 1M6XC 2CRXA 5CRXA 5C6KA 1M6XA 3VCFA 4CRXA 3C29A 1P7DA 1XO0A 1A0PA 3C28A 1PVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKH A;  3MGV A;  1NZB A;  1PVP A;  1F44 A;  1AIH A;  1Q3U A;  1KBU A;  1AE9 A;  5DCF A;  1OUQ A;  5DOR A;  1XNS A;  1P4E C;  3UXU A;  1P4E A;  3CRX A;  4DKS A;  1Q3V A;  1DRG A;  2HOI A;  1CRX A;  1MA7 A;  1FLO A;  2A3V A;  1Z19 A;  1PVR A;  2HOF A;  4A8E A;  1Z1B A;  1M6X C;  2CRX A;  5CRX A;  5C6K A;  1M6X A;  3VCF A;  4CRX A;  3C29 A;  1P7D A;  1XO0 A;  1A0P A;  3C28 A;  1PVQ A; 
#chains in the Genus database with same CATH topology
 3CW8 X;  1XRA A;  3IPL A;  1UWD A;  1QWI A;  3IEU A;  2F4V C;  1NYE A;  3NI2 A;  1K0R A;  1OUQ A;  1XNS A;  3R9W A;  4JI4 C;  3PBK A;  1N32 C;  3UZ0 A;  1XMO C;  2KZF A;  4RLF A;  4KTT A;  5LMN C;  4RVO A;  3O2E A;  3EQ6 A;  4NOZ A;  2HHH C;  3DHV A;  4DUY C;  4B3R C;  3IML A;  4I9F A;  3TQI A;  2YWB A;  4D57 A;  1USP B;  3GR1 A;  2P20 A;  4NXN C;  3A26 A;  4MTN A;  2M5H A;  3NPD A;  1PVP A;  5BR8 C;  2ZM6 C;  4DR6 C;  4E0G A;  1HNW C;  2P2J A;  3EER A;  1P4E A;  4JI7 C;  2DHM A;  2OBV A;  2E7G A;  1MXB A;  3AY0 A;  4PUG A;  1P7D A;  4LF5 C;  2Y27 A;  2NCL A;  2VQF C;  5JRH A;  4NDN A;  4DUZ C;  4E0P A;  2EGT A;  2WD9 A;  2MCQ A;  4G37 A;  1PG3 A;  2UUB C;  2WP0 C;  1Q3V A;  2PT7 G;  4FUQ A;  1USP A;  1MA7 A;  3S82 A;  1LQL A;  3RG2 A;  4JYA C;  1M6X A;  4GKK C;  2P2B A;  4PUH A;  4D4I A;  5AE1 A;  3LNO A;  3A9V A;  2BH1 X;  4RM2 A;  3T1Y C;  3NKH A;  4BC7 A;  2E0G A;  4GS5 A;  3PES A;  4DR7 C;  5BSM A;  1MKY A;  1GPM A;  1VLA A;  5IWA C;  4LFC C;  2UUC C;  3CRX A;  3T1H C;  4D4G A;  2HJG A;  2YWC A;  1WF3 A;  2OPL B;  4LE5 A;  1FJG C;  2E8E A;  4DV3 C;  3GKU A;  4RVN A;  4K0K C;  1NZB A;  5BSU A;  5T8T A;  4RM3 A;  3TUF A;  4IR7 A;  4L4Q A;  5KYV A;  2Y4N A;  2ATW A;  1O9T A;  4ODJ A;  3A4I A;  1KKG A;  1BA3 A;  5K85 A;  1XNR C;  1N34 C;  4R0M A;  3RV2 A;  2DYJ A;  3C28 A;  2VZE A;  2CY1 A;  3FCC A;  3ETO A;  4FTF A;  5BST A;  1V26 A;  1XRB A;  2YCB A;  2OPL A;  4PHT A;  1MDB A;  1MXA A;  1AMU A;  4DKS A;  4ACO A;  1HNX C;  4OX9 C;  2QVX X;  3L8C A;  5BSR A;  4A8E A;  4ISB A;  4D56 A;  4LF4 C;  3C29 A;  3CQ2 A;  2QVZ X;  4DR5 C;  3MGV A;  3TR3 A;  1F44 A;  1XS3 A;  2KZ0 A;  3LNV A;  2Y4O A;  1YJ7 A;  4DV2 C;  5BSW A;  3UX3 A;  5CZV A;  4DR1 C;  4JV5 C;  2D27 A;  1ML8 A;  1RY2 A;  4LF7 C;  4FUT A;  4ZJZ A;  3IEV A;  3E7W A;  5BUQ A;  1VEH A;  4DR4 C;  4YY3 C;  3CW9 A;  1P4E C;  5KEI A;  5LCI A;  4RLQ A;  2HOI A;  1CRX A;  5AE2 A;  2D1R A;  4LF9 C;  1XHJ A;  4I9G A;  4OYC A;  3CJE A;  3GR0 A;  4XX2 A;  4DV7 C;  3C5E A;  2PN2 A;  1XO0 A;  4DV4 C;  4LF8 C;  4WV3 A;  2YX1 A;  2D1S A;  4JI1 C;  3J81 D;  2JNV A;  4LF6 C;  4NXM C;  1IBL C;  1T5H X;  3A25 A;  4E10 A;  2E8F A;  3SO4 A;  5A2Q D;  5CZX A;  3R44 A;  5CRX A;  2CRX A;  4LFA C;  5ADZ A;  4X65 C;  3LUS A;  4DR2 C;  4E0Y A;  5KYT A;  4G36 A;  2E5L C;  1N36 C;  1P7L A;  4BCA A;  4DV0 C;  3H2T A;  4PRO C;  5A1I A;  1PA4 A;  4B3T C;  5IT9 D;  1XMQ C;  2P02 A;  4JI5 C;  2CU6 A;  2HOF A;  3NYQ A;  3L95 X;  1RG9 A;  5AE3 A;  3G7S A;  4GXQ A;  2KDN A;  2P2M A;  3LGX A;  4DCU A;  4DV6 C;  5BUS A;  1T5D X;  3N2Q A;  1JOS A;  4IZ6 A;  1N2F A;  4GKJ C;  3CQ1 A;  5DV9 A;  4DV1 C;  1O90 A;  1FLO A;  1MD9 A;  2DPL A;  1Z19 A;  5BUR A;  1Z1B A;  4GXR A;  3I07 A;  4YHH C;  1HNZ C;  1XRC A;  2OO4 A;  4DR3 C;  2VSQ A;  4X66 C;  2MMA B;  1I94 C;  3AF5 A;  3UX2 A;  1AIH A;  1Q3U A;  1KBU A;  2AYA A;  5DCF A;  1IB8 A;  1TH5 A;  5DOR A;  3KXW A;  3GPC A;  3FCE A;  1IBK C;  4E0Z A;  1ULT A;  2QW0 X;  4KTV A;  4KHP C;  4X64 C;  4JI6 C;  4DG8 A;  1V25 A;  1UKK A;  2VQE C;  2ZZM A;  2UXD C;  4X62 C;  4LFB C;  3VCF A;  4CRX A;  3DAY A;  1L2F A;  2QL8 A;  3K6R A;  1O93 A;  2UXC C;  2V6E A;  2PRO A;  3UEB A;  1PVQ A;  2ZZN A;  3VNQ A;  1XNQ C;  3OTO C;  3AF6 A;  4OXI A;  1AE9 A;  4ZLP A;  5IFI A;  1WH9 A;  3UXU A;  3DLP X;  2QVY X;  3NYR A;  4R1M A;  4DCV A;  1DRG A;  4L2Z A;  1ZB9 A;  4DG9 A;  3PRO C;  1NY8 A;  2D28 C;  2D1Q A;  4B3S C;  2CXC A;  5A1G A;  1PG4 A;  4G1I A;  1HR0 C;  1A0P A;  2UU9 C;  3E7X A;  4JI0 C;  5FLX D;  1N33 C;  2P2Q A;  2MM9 A;  4AQY C;  3N54 B;  2Z51 A;  3R9X A;  1ZB8 A;  4JI3 C;  1HH2 P;  4L7I A;  2UXB C;  4JI2 C;  3UOW A;  2ONF A;  5BSV A;  3A9U A;  4MH4 A;  1IBM C;  1M6X C;  1LCI A;  5K8F A;  3VNR A;  5C6K A;  4PUI A;  1J5E C;  4R1L A;  3B7W A;  2E8C A;  1EGA A;  1WCJ A;  2D1T A;  5E7Q A;  2P2F A;  3I08 A;  5H9U A;  4DWP A;  3JAM D;  3VNS A;  1MDF A;  4TPS B;  1PVR A;  3LAX A;  1FUG A;  2XR1 A;  4EAT A;  1QM4 A;  4WS9 A;  3T79 A;  4K0B A;  4B3M C;  4HPV A;  4DV5 C;  5LMU C;  4DCT A;  2V7B A;  2BJO A;  3TDE A;  4BSZ A;  1PU1 A;  4F43 A;  3J80 D;  2ASB A;  4U5Y D;  4E0J A;  5A19 A;  2D7V A;  5T8S A;  3ETC A;  4BBY A;  2A3V A;  2M5O A;  4BC9 A;  2UUA C;  1MXC A;  3SQI A;  4DCS A;  4JM1 A;  4PZP A;  1O92 A;  5GTD A;  4JI8 C;  4F41 A;  1V60 A;  2JMP A;  4RMN A;  3CQ3 A; 
#chains in the Genus database with same CATH homology
 3NKH A;  3MGV A;  1NZB A;  1PVP A;  1F44 A;  1AIH A;  1Q3U A;  1KBU A;  1AE9 A;  5DCF A;  1OUQ A;  5DOR A;  1XNS A;  1P4E C;  3UXU A;  1P4E A;  3CRX A;  4DKS A;  1Q3V A;  1DRG A;  2HOI A;  1CRX A;  1MA7 A;  1FLO A;  2A3V A;  1Z19 A;  1PVR A;  2HOF A;  4A8E A;  1Z1B A;  1M6X C;  2CRX A;  5CRX A;  5C6K A;  1M6X A;  3VCF A;  4CRX A;  3C29 A;  1P7D A;  1XO0 A;  1A0P A;  3C28 A;  1PVQ A; 
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