The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
122
|
sequence length |
421
|
structure length |
400
|
Chain Sequence |
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb |
| molecule keywords |
5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
|
| molecule tags |
Dna binding protein/recombination/dna
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
122
|
| structure length |
400
|
| sequence length |
421
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2003-04-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03930 | Flp_N | Recombinase Flp protein N-terminus |
| A | PF05202 | Flp_C | Recombinase Flp protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) |
#chains in the Genus database with same CATH superfamily 1AIH A; 3C29 A; 1Z1B A; 4A8E A; 1PVP A; 1P7D A; 1M6X A; 3VCF A; 1XNS A; 1M6X C; 1PVR A; 1FLO A; 1A0P A; 3MGV A; 3C28 A; 4CRX A; 1DRG A; 5DCF A; 2CRX A; 2HOF A; 5DOR A; 2HOI A; 1Q3V A; 3UXU A; 1Q3U A; 5C6K A; 1OUQ A; 1NZB A; 3NKH A; 1CRX A; 5CRX A; 1AE9 A; 3CRX A; 4DKS A; 1P4E A; 1XO0 A; 1KBU A; 1F44 A; 2A3V A; 1P4E C; 1PVQ A; 1Z19 A; 1MA7 A; #chains in the Genus database with same CATH topology 5A19 A; 4LF4 C; 2UUC C; 1P7L A; 4OYC A; 2QVX X; 1VLA A; 3R9W A; 4X65 C; 4YHH C; 3NI2 A; 5DOR A; 5CZX A; 4B3S C; 2P2F A; 2P2J A; 2E5L C; 4DV0 C; 4ACO A; 1I94 C; 4JI5 C; 2WD9 A; 4DR2 C; 1IBK C; 2ZZM A; 4I9G A; 3EQ6 A; 1P7D A; 5E7Q A; 3RV2 A; 2QW0 X; 2VSQ A; 3IML A; 4KHP C; 4GXR A; 3VNR A; 3CQ1 A; 2UUA C; 1OUQ A; 1O92 A; 3DLP X; 1LQL A; 4FUT A; 1EGA A; 3CRX A; 3C29 A; 3PBK A; 4DV5 C; 3FCC A; 3TR3 A; 4DR7 C; 1PVR A; 4KTT A; 2HHH C; 1A0P A; 4DCS A; 3DHV A; 5LMN C; 2CRX A; 5JRH A; 2OPL B; 4MTN A; 1O93 A; 2UXD C; 4NXM C; 2OPL A; 1RY2 A; 4BBY A; 1MDF A; 4RM2 A; 3A9V A; 1XRC A; 3LGX A; 3UZ0 A; 3GR1 A; 1MXA A; 4R0M A; 5T8S A; 2ZM6 C; 4DCV A; 2AYA A; 1P4E C; 1HH2 P; 2JMP A; 2BJO A; 4E0P A; 1MKY A; 4BC9 A; 3MGV A; 4D4G A; 1HNW C; 4K0B A; 4D4I A; 5BUS A; 2MMA B; 2Y4N A; 3EER A; 4DV2 C; 1CRX A; 2E0G A; 2E8F A; 4JI3 C; 2D1S A; 4E0Z A; 2P2M A; 2D28 C; 1MXB A; 1AIH A; 4RVN A; 2HJG A; 4LF6 C; 3RG2 A; 2XR1 A; 4LFB C; 3UX3 A; 1N32 C; 1O90 A; 1M6X C; 4DV6 C; 3IEV A; 5KEI A; 1DRG A; 5BUQ A; 4RLF A; 4L7I A; 1N36 C; 3UOW A; 2CY1 A; 4JI6 C; 1XO0 A; 4G1I A; 5BSM A; 5KYT A; 1WF3 A; 2MCQ A; 1JOS A; 1RG9 A; 3TUF A; 1USP B; 3C28 A; 3B7W A; 1USP A; 3UEB A; 3L95 X; 3IPL A; 5A2Q D; 4K0K C; 3CJE A; 1MXC A; 3S82 A; 4B3T C; 2NCL A; 5BSV A; 1KKG A; 1FUG A; 3JAM D; 1N33 C; 2QVY X; 3I08 A; 1UKK A; 1T5H X; 2DYJ A; 2Y4O A; 2CXC A; 3ETO A; 4ISB A; 3FCE A; 4RMN A; 4F41 A; 5CZV A; 3TDE A; 5K8F A; 3UXU A; 4R1M A; 4OX9 C; 1WCJ A; 5T8T A; 2E8E A; 4JYA C; 5IFI A; 4LFC C; 2KZ0 A; 2YX1 A; 2P20 A; 2M5O A; 2YWC A; 2D7V A; 5BR8 C; 3K6R A; 4DV1 C; 1J5E C; 5IT9 D; 1PG3 A; 4PUG A; 2HOF A; 4JI8 C; 1ML8 A; 3H2T A; 3SQI A; 1PA4 A; 4DV7 C; 1HNX C; 4B3R C; 5BSW A; 5BUR A; 1O9T A; 2VQE C; 2UUB C; 4D56 A; 1N2F A; 4U5Y D; 2F4V C; 5LCI A; 2YWB A; 3LNV A; 4RM3 A; 3J81 D; 4KTV A; 2CU6 A; 2BH1 X; 2HOI A; 4DR1 C; 5GTD A; 2M5H A; 1PG4 A; 3OTO C; 3SO4 A; 3AF5 A; 4JV5 C; 3A4I A; 2Y27 A; 3G7S A; 3VNQ A; 5C6K A; 1QWI A; 5DV9 A; 1XHJ A; 5ADZ A; 5BST A; 1KBU A; 4X66 C; 2QL8 A; 5AE2 A; 1MD9 A; 3AF6 A; 2DHM A; 1M6X A; 3VCF A; 1BA3 A; 4DUZ C; 1WH9 A; 4BSZ A; 3NPD A; 5KYV A; 1XNR C; 5BSU A; 4GXQ A; 4JM1 A; 1V25 A; 2MM9 A; 2P2Q A; 3R9X A; 3N2Q A; 4BC7 A; 1AE9 A; 3VNS A; 3E7X A; 4PRO C; 4YY3 C; 2KZF A; 1PVP A; 2WP0 C; 4DCU A; 1N34 C; 4GS5 A; 4IZ6 A; 3N54 B; 2VQF C; 4JI2 C; 3C5E A; 4NDN A; 2D27 A; 4B3M C; 2YCB A; 2PT7 G; 1TH5 A; 3A25 A; 4LF5 C; 4E0Y A; 3ETC A; 2JNV A; 2VZE A; 1NYE A; 3CQ2 A; 3NKH A; 4PUI A; 4GKJ C; 3CQ3 A; 4FUQ A; 4DV3 C; 2DPL A; 4E0J A; 3I07 A; 4DV4 C; 4IR7 A; 3L8C A; 4R1L A; 4AQY C; 4LE5 A; 4G37 A; 4HPV A; 4RLQ A; 4D57 A; 1Q3V A; 4JI4 C; 1LCI A; 5H9U A; 4F43 A; 2EGT A; 4LF9 C; 1NY8 A; 2Z51 A; 1ULT A; 3A9U A; 2E8C A; 4DR6 C; 2OO4 A; 5CRX A; 4ZJZ A; 4E0G A; 1F44 A; 3KXW A; 4WV3 A; 1Z19 A; 3TQI A; 4L4Q A; 3T79 A; 1XRB A; 3UX2 A; 3IEU A; 4A8E A; 3PRO C; 4JI0 C; 1IBL C; 4NXN C; 1XNS A; 2UU9 C; 3NYR A; 3J80 D; 4FTF A; 4E10 A; 4GKK C; 3GR0 A; 4L2Z A; 1ZB8 A; 2V6E A; 1IBM C; 5FLX D; 4OXI A; 1Q3U A; 5AE3 A; 2D1Q A; 1XRA A; 2ATW A; 1QM4 A; 1VEH A; 4LF8 C; 1P4E A; 2A3V A; 3AY0 A; 1PVQ A; 2P02 A; 2PN2 A; 1HR0 C; 2UXC C; 3CW9 A; 3A26 A; 5IWA C; 2ZZN A; 5BSR A; 4G36 A; 5AE1 A; 3NYQ A; 3E7W A; 3GPC A; 1XMO C; 3DAY A; 4DR5 C; 4ODJ A; 4CRX A; 4JI1 C; 2V7B A; 4PUH A; 1L2F A; 4DG9 A; 2QVZ X; 1XMQ C; 4XX2 A; 2E7G A; 2ONF A; 1IB8 A; 4DR4 C; 1FJG C; 3T1Y C; 4DKS A; 2ASB A; 1NZB A; 1K0R A; 4I9F A; 1MA7 A; 4ZLP A; 2KDN A; 2OBV A; 4DG8 A; 1Z1B A; 5A1G A; 4NOZ A; 4DWP A; 4DR3 C; 1T5D X; 1AMU A; 3GKU A; 3R44 A; 4PZP A; 5DCF A; 1ZB9 A; 3LAX A; 4WS9 A; 4MH4 A; 1V26 A; 3PES A; 3O2E A; 4BCA A; 4DUY C; 5A1I A; 3T1H C; 4X64 C; 1XNQ C; 1PU1 A; 4X62 C; 3LUS A; 1V60 A; 4DCT A; 1FLO A; 4EAT A; 3LNO A; 4PHT A; 1UWD A; 1YJ7 A; 5LMU C; 4LF7 C; 4TPS B; 5K85 A; 1MDB A; 1XS3 A; 1HNZ C; 1GPM A; 2D1R A; 2PRO A; 3CW8 X; 4JI7 C; 2D1T A; 4LFA C; 4RVO A; 2P2B A; 2UXB C; #chains in the Genus database with same CATH homology 1AIH A; 3C29 A; 1Z1B A; 4A8E A; 1PVP A; 1P7D A; 1M6X A; 3VCF A; 1XNS A; 1M6X C; 1PVR A; 1FLO A; 1A0P A; 3MGV A; 3C28 A; 4CRX A; 1DRG A; 5DCF A; 2CRX A; 2HOF A; 5DOR A; 2HOI A; 1Q3V A; 3UXU A; 1Q3U A; 5C6K A; 1OUQ A; 1NZB A; 3NKH A; 1CRX A; 5CRX A; 1AE9 A; 3CRX A; 4DKS A; 1P4E A; 1XO0 A; 1KBU A; 1F44 A; 2A3V A; 1P4E C; 1PVQ A; 1Z19 A; 1MA7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
