1P4E | Genus

Total Genus 122

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	122
sequence length	421
structure length	400
Chain Sequence	SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 400 atoms

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400 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/recombination/dna
source organism	Saccharomyces cerevisiae
publication title	The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis pubmed doi rcsb
molecule keywords	5'-D(TPAPAPGPTPTPCPCPTPAPTPTP*C)-3'
total genus	122
structure length	400
sequence length	421
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-04-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03930	Flp_N	Recombinase Flp protein N-terminus
A	PF05202	Flp_C	Recombinase Flp protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase; Chain A	Intergrase catalytic core	1p4eA02
3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase; Chain A, domain 3	FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1)	1p4eA01

3C28A 1PVQA 4CRXA 3UXUA 3C29A 1A0PA 1M6XC 5CRXA 3MGVA 1DRGA 5DCFA 1Z1BA 2CRXA 1MA7A 1XO0A 2A3VA 1AE9A 1OUQA 1NZBA 1AIHA 1KBUA 3VCFA 4A8EA 2HOIA 1P7DA 5DORA 1F44A 1Q3UA 1P4EA 3NKHA 1CRXA 1PVRA 3CRXA 2HOFA 1Q3VA 5C6KA 1FLOA 1P4EC 1M6XA 4DKSA 1XNSA 1Z19A 1PVPA
chains in the Genus database with same CATH superfamily

3C28A 3E7WA 1M6XC 3FCCA 1IBMC 3EERA 4NXMC 1O9TA 4PROC 4ODJA 1KBUA 3IPLA 3J80D 5AE1A 3IMLA 2HOIA 3IEUA 2CU6A 1HH2P 2ATWA 4DR2C 4F43A 4L4QA 3LGXA 2AYAA 1M6XA 5K85A 4BC7A 4ZJZA 2D7VA 3KXWA 4NXNC 4GKKC 3OTOC 4CRXA 3C29A 5CZVA 2P2JA 3AF6A 1MDFA 1XO0A 2QVYX 3EQ6A 3R9WA 1O92A 5A19A 1MDBA 2UXBC 1GPMA 3PROC 1ZB9A 3RV2A 4DCVA 5BR8C 2UXCC 2P2QA 4BBYA 5T8TA 4JI4C 1WH9A 2QL8A 4DWPA 2D27A 4JI7C 1MXBA 2ASBA 1A0PA 1IBKC 1HNWC 2CRXA 4PZPA 3CW9A 2A3VA 4LFBC 4JI3C 1HNZC 4BSZA 1MXAA 1NYEA 3CRXA 3A4IA 3DLPX 3A25A 3C5EA 3CQ3A 5A1GA 1FLOA 4U5YD 5BUSA 4IZ6A 4JYAC 2JMPA 5IT9D 2PT7G 4FTFA 4ZLPA 4RM3A 4DV2C 3T1YC 3L8CA 4LF4C 4LE5A 3I08A 3LNVA 1PVRA 4I9GA 4RLQA 1N2FA 4RVNA 3NYQA 2PROA 4LF6C 3UXUA 5FLXD 2UUBC 2PN2A 1T5DX 2D28C 2KZ0A 2QVXX 3CQ1A 4TPSB 3PESA 1J5EC 4E0PA 4R0MA 1AE9A 5H9UA 4LF7C 4LFAC 4MTNA 5LMUC 3NKHA 1XRAA 2HJGA 4JI1C 3ETOA 4K0BA 4R1MA 4RLFA 1I94C 4DCTA 3T79A 5ADZA 3A26A 5GTDA 1HNXC 4E10A 4E0JA 2Y27A 1N32C 3N2QA 1L2FA 2DHMA 1EGAA 3UX2A 5BSMA 1YJ7A 2F4VC 4FUQA 1UWDA 4AQYC 2E5LC 5CZXA 1FUGA 1PG4A 2ZZNA 1N34C 2ZZMA 5T8SA 1P4EC 2EGTA 4ACOA 3TQIA 4JI5C 5LMNC 1XNRC 1V60A 3T1HC 4LF8C 1P7LA 4RVOA 1XRCA 4DV4C 3TDEA 3IEVA 4RM2A 1HR0C 1P7DA 1MKYA 5DORA 2VQFC 4DCUA 1P4EA 5BSVA 4B3MC 4DV6C 2HOFA 1Q3VA 3NYRA 2BH1X 5C6KA 4L7IA 3N54B 1N36C 3SQIA 3G7SA 1VEHA 1IB8A 2D1TA 1XMOC 1V25A 4PUHA 4B3RC 2JNVA 2E8CA 4PUGA 4DV3C 4DG8A 3CW8X 5E7QA 4ISBA 1OUQA 4A8EA 3UEBA 3RG2A 3DHVA 1F44A 1T5HX 3A9UA 3UZ0A 3R9XA 2UUAC 2QVZX 1PU1A 2VZEA 2M5OA 4E0GA 4LF9C 5BSUA 3PBKA 4I9FA 4D57A 4DG9A 1DRGA 5DCFA 4JI0C 2OPLB 3DAYA 5AE3A 3A9VA 2YX1A 4IR7A 1UKKA 2OO4A 2UU9C 2CXCA 2UXDC 2BJOA 3H2TA 5IFIA 3LNOA 2P2BA 4PUIA 2CY1A 4L2ZA 2E8FA 4B3SC 1MXCA 4NOZA 1RG9A 4EATA 3FCEA 3UX3A 4GKJC 5IWAC 3AF5A 3R44A 4BC9A 2DYJA 2VSQA 3JAMD 4DCSA 4DR5C 1XMQC 4MH4A 4WS9A 4GXRA 1PA4A 2P02A 2Y4NA 2Y4OA 3TR3A 4DUYC 2NCLA 3J81D 2WP0C 4DKSA 2XR1A 4DUZC 4JV5C 4X65C 2DPLA 3CQ2A 2V6EA 4JI8C 1Z1BA 1MD9A 4LF5C 2MMAB 1XNQC 4D4GA 2P2MA 2D1QA 4DR3C 4X66C 3GR1A 2Z51A 2HHHC 1ULTA 3TUFA 3NPDA 1Z19A 1PVPA 3K6RA 1WCJA 1JOSA 4YHHC 4DV0C 3GKUA 5BUQA 1FJGC 2YCBA 1KKGA 4OX9C 4OXIA 2E8EA 3B7WA 1WF3A 4R1LA 1CRXA 1K0RA 3CJEA 4DR1C 1ML8A 4F41A 4DV5C 1XS3A 3UOWA 2P20A 4RMNA 1RY2A 3MGVA 4LFCC 3VNSA 1TH5A 4G1IA 4X62C 4DR7C 4K0KC 5JRHA 2YWBA 2P2FA 4JM1A 1USPA 3LUSA 5AE2A 4B3TC 4D4IA 1BA3A 5BSWA 1XNSA 1O90A 1USPB 5DV9A 4DR4C 4JI6C 2MCQA 3I07A 5CRXA 2KZFA 5A1IA 3VNRA 2OPLA 4GXQA 4PHTA 4OYCA 5LCIA 1NZBA 3VCFA 3LAXA 5KYVA 5KYTA 1IBLC 4KHPC 5BURA 1PG3A 4NDNA 4DR6C 2E7GA 2ONFA 3NI2A 2ZM6C 3GR0A 1O93A 3VNQA 2VQEC 3SO4A 2MM9A 3L95X 1PVQA 4YY3C 4DV7C 4E0ZA 3GPCA 2M5HA 1VLAA 2KDNA 3ETCA 4GS5A 4XX2A 1AMUA 4JI2C 1Q3UA 4KTTA 2QW0X 4D56A 3AY0A 2E0GA 4DV1C 1XRBA 3E7XA 1LCIA 1QWIA 1XHJA 3S82A 5K8FA 2V7BA 2YWCA 4X64C 5A2QD 1MA7A 2D1SA 3O2EA 1AIHA 4FUTA 1LQLA 1QM4A 4WV3A 1N33C 2D1RA 1NY8A 1V26A 4G37A 2UUCC 2WD9A 4HPVA 1ZB8A 2OBVA 4BCAA 5KEIA 5BSTA 4KTVA 4G36A 5BSRA 4E0YA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3C28 A;  1PVQ A;  4CRX A;  3UXU A;  3C29 A;  1A0P A;  1M6X C;  5CRX A;  3MGV A;  1DRG A;  5DCF A;  1Z1B A;  2CRX A;  1MA7 A;  1XO0 A;  2A3V A;  1AE9 A;  1OUQ A;  1NZB A;  1AIH A;  1KBU A;  3VCF A;  4A8E A;  2HOI A;  1P7D A;  5DOR A;  1F44 A;  1Q3U A;  1P4E A;  3NKH A;  1CRX A;  1PVR A;  3CRX A;  2HOF A;  1Q3V A;  5C6K A;  1FLO A;  1P4E C;  1M6X A;  4DKS A;  1XNS A;  1Z19 A;  1PVP A; 
#chains in the Genus database with same CATH topology
 3C28 A;  3E7W A;  1M6X C;  3FCC A;  1IBM C;  3EER A;  4NXM C;  1O9T A;  4PRO C;  4ODJ A;  1KBU A;  3IPL A;  3J80 D;  5AE1 A;  3IML A;  2HOI A;  3IEU A;  2CU6 A;  1HH2 P;  2ATW A;  4DR2 C;  4F43 A;  4L4Q A;  3LGX A;  2AYA A;  1M6X A;  5K85 A;  4BC7 A;  4ZJZ A;  2D7V A;  3KXW A;  4NXN C;  4GKK C;  3OTO C;  4CRX A;  3C29 A;  5CZV A;  2P2J A;  3AF6 A;  1MDF A;  1XO0 A;  2QVY X;  3EQ6 A;  3R9W A;  1O92 A;  5A19 A;  1MDB A;  2UXB C;  1GPM A;  3PRO C;  1ZB9 A;  3RV2 A;  4DCV A;  5BR8 C;  2UXC C;  2P2Q A;  4BBY A;  5T8T A;  4JI4 C;  1WH9 A;  2QL8 A;  4DWP A;  2D27 A;  4JI7 C;  1MXB A;  2ASB A;  1A0P A;  1IBK C;  1HNW C;  2CRX A;  4PZP A;  3CW9 A;  2A3V A;  4LFB C;  4JI3 C;  1HNZ C;  4BSZ A;  1MXA A;  1NYE A;  3CRX A;  3A4I A;  3DLP X;  3A25 A;  3C5E A;  3CQ3 A;  5A1G A;  1FLO A;  4U5Y D;  5BUS A;  4IZ6 A;  4JYA C;  2JMP A;  5IT9 D;  2PT7 G;  4FTF A;  4ZLP A;  4RM3 A;  4DV2 C;  3T1Y C;  3L8C A;  4LF4 C;  4LE5 A;  3I08 A;  3LNV A;  1PVR A;  4I9G A;  4RLQ A;  1N2F A;  4RVN A;  3NYQ A;  2PRO A;  4LF6 C;  3UXU A;  5FLX D;  2UUB C;  2PN2 A;  1T5D X;  2D28 C;  2KZ0 A;  2QVX X;  3CQ1 A;  4TPS B;  3PES A;  1J5E C;  4E0P A;  4R0M A;  1AE9 A;  5H9U A;  4LF7 C;  4LFA C;  4MTN A;  5LMU C;  3NKH A;  1XRA A;  2HJG A;  4JI1 C;  3ETO A;  4K0B A;  4R1M A;  4RLF A;  1I94 C;  4DCT A;  3T79 A;  5ADZ A;  3A26 A;  5GTD A;  1HNX C;  4E10 A;  4E0J A;  2Y27 A;  1N32 C;  3N2Q A;  1L2F A;  2DHM A;  1EGA A;  3UX2 A;  5BSM A;  1YJ7 A;  2F4V C;  4FUQ A;  1UWD A;  4AQY C;  2E5L C;  5CZX A;  1FUG A;  1PG4 A;  2ZZN A;  1N34 C;  2ZZM A;  5T8S A;  1P4E C;  2EGT A;  4ACO A;  3TQI A;  4JI5 C;  5LMN C;  1XNR C;  1V60 A;  3T1H C;  4LF8 C;  1P7L A;  4RVO A;  1XRC A;  4DV4 C;  3TDE A;  3IEV A;  4RM2 A;  1HR0 C;  1P7D A;  1MKY A;  5DOR A;  2VQF C;  4DCU A;  1P4E A;  5BSV A;  4B3M C;  4DV6 C;  2HOF A;  1Q3V A;  3NYR A;  2BH1 X;  5C6K A;  4L7I A;  3N54 B;  1N36 C;  3SQI A;  3G7S A;  1VEH A;  1IB8 A;  2D1T A;  1XMO C;  1V25 A;  4PUH A;  4B3R C;  2JNV A;  2E8C A;  4PUG A;  4DV3 C;  4DG8 A;  3CW8 X;  5E7Q A;  4ISB A;  1OUQ A;  4A8E A;  3UEB A;  3RG2 A;  3DHV A;  1F44 A;  1T5H X;  3A9U A;  3UZ0 A;  3R9X A;  2UUA C;  2QVZ X;  1PU1 A;  2VZE A;  2M5O A;  4E0G A;  4LF9 C;  5BSU A;  3PBK A;  4I9F A;  4D57 A;  4DG9 A;  1DRG A;  5DCF A;  4JI0 C;  2OPL B;  3DAY A;  5AE3 A;  3A9V A;  2YX1 A;  4IR7 A;  1UKK A;  2OO4 A;  2UU9 C;  2CXC A;  2UXD C;  2BJO A;  3H2T A;  5IFI A;  3LNO A;  2P2B A;  4PUI A;  2CY1 A;  4L2Z A;  2E8F A;  4B3S C;  1MXC A;  4NOZ A;  1RG9 A;  4EAT A;  3FCE A;  3UX3 A;  4GKJ C;  5IWA C;  3AF5 A;  3R44 A;  4BC9 A;  2DYJ A;  2VSQ A;  3JAM D;  4DCS A;  4DR5 C;  1XMQ C;  4MH4 A;  4WS9 A;  4GXR A;  1PA4 A;  2P02 A;  2Y4N A;  2Y4O A;  3TR3 A;  4DUY C;  2NCL A;  3J81 D;  2WP0 C;  4DKS A;  2XR1 A;  4DUZ C;  4JV5 C;  4X65 C;  2DPL A;  3CQ2 A;  2V6E A;  4JI8 C;  1Z1B A;  1MD9 A;  4LF5 C;  2MMA B;  1XNQ C;  4D4G A;  2P2M A;  2D1Q A;  4DR3 C;  4X66 C;  3GR1 A;  2Z51 A;  2HHH C;  1ULT A;  3TUF A;  3NPD A;  1Z19 A;  1PVP A;  3K6R A;  1WCJ A;  1JOS A;  4YHH C;  4DV0 C;  3GKU A;  5BUQ A;  1FJG C;  2YCB A;  1KKG A;  4OX9 C;  4OXI A;  2E8E A;  3B7W A;  1WF3 A;  4R1L A;  1CRX A;  1K0R A;  3CJE A;  4DR1 C;  1ML8 A;  4F41 A;  4DV5 C;  1XS3 A;  3UOW A;  2P20 A;  4RMN A;  1RY2 A;  3MGV A;  4LFC C;  3VNS A;  1TH5 A;  4G1I A;  4X62 C;  4DR7 C;  4K0K C;  5JRH A;  2YWB A;  2P2F A;  4JM1 A;  1USP A;  3LUS A;  5AE2 A;  4B3T C;  4D4I A;  1BA3 A;  5BSW A;  1XNS A;  1O90 A;  1USP B;  5DV9 A;  4DR4 C;  4JI6 C;  2MCQ A;  3I07 A;  5CRX A;  2KZF A;  5A1I A;  3VNR A;  2OPL A;  4GXQ A;  4PHT A;  4OYC A;  5LCI A;  1NZB A;  3VCF A;  3LAX A;  5KYV A;  5KYT A;  1IBL C;  4KHP C;  5BUR A;  1PG3 A;  4NDN A;  4DR6 C;  2E7G A;  2ONF A;  3NI2 A;  2ZM6 C;  3GR0 A;  1O93 A;  3VNQ A;  2VQE C;  3SO4 A;  2MM9 A;  3L95 X;  1PVQ A;  4YY3 C;  4DV7 C;  4E0Z A;  3GPC A;  2M5H A;  1VLA A;  2KDN A;  3ETC A;  4GS5 A;  4XX2 A;  1AMU A;  4JI2 C;  1Q3U A;  4KTT A;  2QW0 X;  4D56 A;  3AY0 A;  2E0G A;  4DV1 C;  1XRB A;  3E7X A;  1LCI A;  1QWI A;  1XHJ A;  3S82 A;  5K8F A;  2V7B A;  2YWC A;  4X64 C;  5A2Q D;  1MA7 A;  2D1S A;  3O2E A;  1AIH A;  4FUT A;  1LQL A;  1QM4 A;  4WV3 A;  1N33 C;  2D1R A;  1NY8 A;  1V26 A;  4G37 A;  2UUC C;  2WD9 A;  4HPV A;  1ZB8 A;  2OBV A;  4BCA A;  5KEI A;  5BST A;  4KTV A;  4G36 A;  5BSR A;  4E0Y A; 
#chains in the Genus database with same CATH homology
 3C28 A;  1PVQ A;  4CRX A;  3UXU A;  3C29 A;  1A0P A;  1M6X C;  5CRX A;  3MGV A;  1DRG A;  5DCF A;  1Z1B A;  2CRX A;  1MA7 A;  1XO0 A;  2A3V A;  1AE9 A;  1OUQ A;  1NZB A;  1AIH A;  1KBU A;  3VCF A;  4A8E A;  2HOI A;  1P7D A;  5DOR A;  1F44 A;  1Q3U A;  1P4E A;  3NKH A;  1CRX A;  1PVR A;  3CRX A;  2HOF A;  1Q3V A;  5C6K A;  1FLO A;  1P4E C;  1M6X A;  4DKS A;  1XNS A;  1Z19 A;  1PVP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1P4EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations