1P4E | Genus

Total Genus 126

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	126
sequence length	421
structure length	399
Chain Sequence	SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/recombination/dna
source organism	Saccharomyces cerevisiae
publication title	The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis pubmed doi rcsb
molecule keywords	5'-D(TPAPAPGPTPTPCPCPTPAPTPTP*C)-3'
total genus	126
structure length	399
sequence length	421
chains with identical sequence	D
ec nomenclature
pdb deposition date	2003-04-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF03930	Flp_N	Recombinase Flp protein N-terminus
C	PF05202	Flp_C	Recombinase Flp protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase; Chain A	Intergrase catalytic core	1p4eC02
3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase; Chain A, domain 3	FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1)	1p4eC01

1CRXA 5CRXA 1F44A 1DRGA 5DCFA 3VCFA 1PVRA 3UXUA 1Z1BA 1PVPA 3MGVA 5DORA 1Q3UA 2HOIA 1OUQA 1AIHA 1AE9A 1XNSA 1XO0A 1MA7A 3CRXA 1KBUA 3C29A 4CRXA 1A0PA 1M6XC 5C6KA 2A3VA 3C28A 3NKHA 1P7DA 1M6XA 1Q3VA 2CRXA 2HOFA 1FLOA 1NZBA 4A8EA 1P4EC 1Z19A 4DKSA 1PVQA 1P4EA
chains in the Genus database with same CATH superfamily

1O93A 2EGTA 4IZ6A 2E8FA 4YHHC 2V6EA 3EERA 1RY2A 1OUQA 3CW8X 3IMLA 1K0RA 5A1GA 4BBYA 2D1TA 5LMUC 3E7XA 5KEIA 3SQIA 5BSVA 2DYJA 5JRHA 1MD9A 3NYRA 4YY3C 5BSUA 3IEVA 4BC7A 4GXRA 1LCIA 4DCTA 4DCUA 3ETOA 2V7BA 4NOZA 4D57A 4JI3C 2JNVA 2DHMA 4JI5C 2UXDC 3UZ0A 3FCCA 1ZB9A 3AF6A 4E0PA 2KDNA 3I07A 2BH1X 5LMNC 1MA7A 3CRXA 4LFCC 4E0JA 3J80D 3C29A 4PUHA 1N2FA 5T8TA 1V25A 2DPLA 3T1YC 3UOWA 2OPLA 2MCQA 4MH4A 4XX2A 3R44A 2MMAB 1XRCA 4E0YA 4JI2C 5CRXA 1WCJA 4GKJC 3UXUA 3S82A 1Q3UA 3N54B 4LF5C 2UUCC 2MM9A 2CY1A 4PROC 1A0PA 2VQEC 5KYVA 2UU9C 4DCSA 3LAXA 1ZB8A 5CZXA 3CW9A 1NZBA 2ZM6C 4E0ZA 3AF5A 4E10A 4DV6C 1VLAA 1JOSA 4R1MA 3C5EA 2XR1A 2P2BA 4PUIA 4OX9C 2E0GA 4DCVA 1XNSA 2Y27A 4X66C 1IBKC 3A26A 2WD9A 1XMOC 2YX1A 3GR0A 1FJGC 4DUYC 5LCIA 1IB8A 4WS9A 1T5HX 4DV0C 2QVZX 3IEUA 3IPLA 4OXIA 4B3SC 2D28C 5KYTA 4E0GA 4GXQA 1O90A 4DR6C 4G1IA 3RV2A 2D27A 4AQYC 4LFAC 2M5OA 3FCEA 3K6RA 2HHHC 3G7SA 2AYAA 4B3TC 2PT7G 1WH9A 4I9GA 4EATA 1ML8A 2D1RA 4KHPC 3R9XA 1J5EC 3E7WA 4DV7C 2P2FA 2OBVA 3UX2A 3T1HC 4LFBC 2P2QA 3CQ3A 1IBLC 2WP0C 5H9UA 4KTVA 4DV4C 3PROC 1USPA 2M5HA 4DG8A 4RM2A 2KZ0A 4JM1A 1I94C 4BCAA 1XRAA 5C6KA 1N33C 1MXCA 4I9FA 4NDNA 5IT9D 4U5YD 4BSZA 4DV1C 3NYQA 4K0BA 3GKUA 3GR1A 4NXNC 4LF6C 3DAYA 4ACOA 3PESA 4ZJZA 2QVYX 2QVXX 2OPLB 4F41A 1O92A 1Q3VA 1XS3A 4JI0C 1FLOA 2UUBC 2ZZMA 4JV5C 3L8CA 1LQLA 3A9VA 1P4EA 2Y4NA 5DCFA 1MKYA 1PG4A 2OO4A 1HH2P 3UX3A 1HNWC 3TUFA 5DV9A 1KKGA 1VEHA 5T8SA 4A8EA 3N2QA 2YWCA 2ATWA 3PBKA 1PVQA 4TPSB 2YCBA 4DV2C 1MDBA 1DRGA 4DR5C 1N34C 1NYEA 1NY8A 1PVPA 2Z51A 1N36C 1AE9A 1RG9A 1MXBA 1MXAA 2YWBA 3VNRA 1XNRC 3SO4A 4DR3C 4X65C 3NI2A 5AE3A 2P2MA 3A9UA 3T79A 2E7GA 2P2JA 4DKSA 4RVNA 4K0KC 3H2TA 3CJEA 5A19A 3MGVA 5DORA 2HOIA 4R1LA 4DR4C 1XHJA 4DR7C 3O2EA 4JI6C 4WV3A 4RVOA 4RLFA 1O9TA 4CRXA 4KTTA 5K85A 4LF7C 2P02A 2VSQA 2JMPA 4DR2C 1M6XA 2CRXA 3LGXA 1T5DX 3LNOA 5IFIA 1QM4A 4PUGA 3UEBA 3J81D 1USPB 1L2FA 3VCFA 4L2ZA 4ZLPA 4DG9A 1HR0C 4PHTA 2Y4OA 1XO0A 4G37A 3VNQA 4RLQA 5BURA 3R9WA 4DV3C 2HOFA 1WF3A 3B7WA 1QWIA 5BSRA 3DHVA 2UUAC 2UXBC 4ISBA 5BSMA 4F43A 1CRXA 4JI8C 2QL8A 4JI7C 4G36A 1UKKA 1KBUA 3GPCA 4X64C 3NKHA 1V26A 3A4IA 2E8EA 5BSTA 5E7QA 5BR8C 3TDEA 1Z19A 3RG2A 3AY0A 4L7IA 2NCLA 3ETCA 5BUSA 2HJGA 1EGAA 1XMQC 2KZFA 4GS5A 1Z1BA 1BA3A 1HNXC 4D56A 3OTOC 4FTFA 2ONFA 3LNVA 2ASBA 1PA4A 1XNQC 2ZZNA 3C28A 2VZEA 1FUGA 1P4EC 4DR1C 4LE5A 1V60A 3I08A 1F44A 4FUQA 3CQ2A 4OYCA 4R0MA 5AE2A 2D7VA 2BJOA 3NPDA 5CZVA 2VQFC 4DV5C 4DWPA 1PU1A 1GPMA 5ADZA 4LF4C 3DLPX 2D1QA 4JYAC 3JAMD 2UXCC 5A2QD 1P7DA 3L95X 1MDFA 4D4GA 1PG3A 3VNSA 4HPVA 1TH5A 4L4QA 4LF8C 1P7LA 5BSWA 1AIHA 1ULTA 5A1IA 3KXWA 1IBMC 4RM3A 5K8FA 3EQ6A 4NXMC 2D1SA 4B3RC 2A3VA 3TR3A 4IR7A 2F4VC 4JI4C 4FUTA 1UWDA 5FLXD 1HNZC 2P20A 4DUZC 4B3MC 1PVRA 4X62C 2QW0X 4JI1C 3LUSA 4GKKC 1N32C 4BC9A 3CQ1A 4MTNA 1M6XC 4ODJA 2PROA 2E5LC 4D4IA 5BUQA 3A25A 4LF9C 2CXCA 2E8CA 4PZPA 2PN2A 2CU6A 5GTDA 5IWAC 1XRBA 1YJ7A 5AE1A 1AMUA 4RMNA 3TQIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1CRX A;  5CRX A;  1F44 A;  1DRG A;  5DCF A;  3VCF A;  1PVR A;  3UXU A;  1Z1B A;  1PVP A;  3MGV A;  5DOR A;  1Q3U A;  2HOI A;  1OUQ A;  1AIH A;  1AE9 A;  1XNS A;  1XO0 A;  1MA7 A;  3CRX A;  1KBU A;  3C29 A;  4CRX A;  1A0P A;  1M6X C;  5C6K A;  2A3V A;  3C28 A;  3NKH A;  1P7D A;  1M6X A;  1Q3V A;  2CRX A;  2HOF A;  1FLO A;  1NZB A;  4A8E A;  1P4E C;  1Z19 A;  4DKS A;  1PVQ A;  1P4E A; 
#chains in the Genus database with same CATH topology
 1O93 A;  2EGT A;  4IZ6 A;  2E8F A;  4YHH C;  2V6E A;  3EER A;  1RY2 A;  1OUQ A;  3CW8 X;  3IML A;  1K0R A;  5A1G A;  4BBY A;  2D1T A;  5LMU C;  3E7X A;  5KEI A;  3SQI A;  5BSV A;  2DYJ A;  5JRH A;  1MD9 A;  3NYR A;  4YY3 C;  5BSU A;  3IEV A;  4BC7 A;  4GXR A;  1LCI A;  4DCT A;  4DCU A;  3ETO A;  2V7B A;  4NOZ A;  4D57 A;  4JI3 C;  2JNV A;  2DHM A;  4JI5 C;  2UXD C;  3UZ0 A;  3FCC A;  1ZB9 A;  3AF6 A;  4E0P A;  2KDN A;  3I07 A;  2BH1 X;  5LMN C;  1MA7 A;  3CRX A;  4LFC C;  4E0J A;  3J80 D;  3C29 A;  4PUH A;  1N2F A;  5T8T A;  1V25 A;  2DPL A;  3T1Y C;  3UOW A;  2OPL A;  2MCQ A;  4MH4 A;  4XX2 A;  3R44 A;  2MMA B;  1XRC A;  4E0Y A;  4JI2 C;  5CRX A;  1WCJ A;  4GKJ C;  3UXU A;  3S82 A;  1Q3U A;  3N54 B;  4LF5 C;  2UUC C;  2MM9 A;  2CY1 A;  4PRO C;  1A0P A;  2VQE C;  5KYV A;  2UU9 C;  4DCS A;  3LAX A;  1ZB8 A;  5CZX A;  3CW9 A;  1NZB A;  2ZM6 C;  4E0Z A;  3AF5 A;  4E10 A;  4DV6 C;  1VLA A;  1JOS A;  4R1M A;  3C5E A;  2XR1 A;  2P2B A;  4PUI A;  4OX9 C;  2E0G A;  4DCV A;  1XNS A;  2Y27 A;  4X66 C;  1IBK C;  3A26 A;  2WD9 A;  1XMO C;  2YX1 A;  3GR0 A;  1FJG C;  4DUY C;  5LCI A;  1IB8 A;  4WS9 A;  1T5H X;  4DV0 C;  2QVZ X;  3IEU A;  3IPL A;  4OXI A;  4B3S C;  2D28 C;  5KYT A;  4E0G A;  4GXQ A;  1O90 A;  4DR6 C;  4G1I A;  3RV2 A;  2D27 A;  4AQY C;  4LFA C;  2M5O A;  3FCE A;  3K6R A;  2HHH C;  3G7S A;  2AYA A;  4B3T C;  2PT7 G;  1WH9 A;  4I9G A;  4EAT A;  1ML8 A;  2D1R A;  4KHP C;  3R9X A;  1J5E C;  3E7W A;  4DV7 C;  2P2F A;  2OBV A;  3UX2 A;  3T1H C;  4LFB C;  2P2Q A;  3CQ3 A;  1IBL C;  2WP0 C;  5H9U A;  4KTV A;  4DV4 C;  3PRO C;  1USP A;  2M5H A;  4DG8 A;  4RM2 A;  2KZ0 A;  4JM1 A;  1I94 C;  4BCA A;  1XRA A;  5C6K A;  1N33 C;  1MXC A;  4I9F A;  4NDN A;  5IT9 D;  4U5Y D;  4BSZ A;  4DV1 C;  3NYQ A;  4K0B A;  3GKU A;  3GR1 A;  4NXN C;  4LF6 C;  3DAY A;  4ACO A;  3PES A;  4ZJZ A;  2QVY X;  2QVX X;  2OPL B;  4F41 A;  1O92 A;  1Q3V A;  1XS3 A;  4JI0 C;  1FLO A;  2UUB C;  2ZZM A;  4JV5 C;  3L8C A;  1LQL A;  3A9V A;  1P4E A;  2Y4N A;  5DCF A;  1MKY A;  1PG4 A;  2OO4 A;  1HH2 P;  3UX3 A;  1HNW C;  3TUF A;  5DV9 A;  1KKG A;  1VEH A;  5T8S A;  4A8E A;  3N2Q A;  2YWC A;  2ATW A;  3PBK A;  1PVQ A;  4TPS B;  2YCB A;  4DV2 C;  1MDB A;  1DRG A;  4DR5 C;  1N34 C;  1NYE A;  1NY8 A;  1PVP A;  2Z51 A;  1N36 C;  1AE9 A;  1RG9 A;  1MXB A;  1MXA A;  2YWB A;  3VNR A;  1XNR C;  3SO4 A;  4DR3 C;  4X65 C;  3NI2 A;  5AE3 A;  2P2M A;  3A9U A;  3T79 A;  2E7G A;  2P2J A;  4DKS A;  4RVN A;  4K0K C;  3H2T A;  3CJE A;  5A19 A;  3MGV A;  5DOR A;  2HOI A;  4R1L A;  4DR4 C;  1XHJ A;  4DR7 C;  3O2E A;  4JI6 C;  4WV3 A;  4RVO A;  4RLF A;  1O9T A;  4CRX A;  4KTT A;  5K85 A;  4LF7 C;  2P02 A;  2VSQ A;  2JMP A;  4DR2 C;  1M6X A;  2CRX A;  3LGX A;  1T5D X;  3LNO A;  5IFI A;  1QM4 A;  4PUG A;  3UEB A;  3J81 D;  1USP B;  1L2F A;  3VCF A;  4L2Z A;  4ZLP A;  4DG9 A;  1HR0 C;  4PHT A;  2Y4O A;  1XO0 A;  4G37 A;  3VNQ A;  4RLQ A;  5BUR A;  3R9W A;  4DV3 C;  2HOF A;  1WF3 A;  3B7W A;  1QWI A;  5BSR A;  3DHV A;  2UUA C;  2UXB C;  4ISB A;  5BSM A;  4F43 A;  1CRX A;  4JI8 C;  2QL8 A;  4JI7 C;  4G36 A;  1UKK A;  1KBU A;  3GPC A;  4X64 C;  3NKH A;  1V26 A;  3A4I A;  2E8E A;  5BST A;  5E7Q A;  5BR8 C;  3TDE A;  1Z19 A;  3RG2 A;  3AY0 A;  4L7I A;  2NCL A;  3ETC A;  5BUS A;  2HJG A;  1EGA A;  1XMQ C;  2KZF A;  4GS5 A;  1Z1B A;  1BA3 A;  1HNX C;  4D56 A;  3OTO C;  4FTF A;  2ONF A;  3LNV A;  2ASB A;  1PA4 A;  1XNQ C;  2ZZN A;  3C28 A;  2VZE A;  1FUG A;  1P4E C;  4DR1 C;  4LE5 A;  1V60 A;  3I08 A;  1F44 A;  4FUQ A;  3CQ2 A;  4OYC A;  4R0M A;  5AE2 A;  2D7V A;  2BJO A;  3NPD A;  5CZV A;  2VQF C;  4DV5 C;  4DWP A;  1PU1 A;  1GPM A;  5ADZ A;  4LF4 C;  3DLP X;  2D1Q A;  4JYA C;  3JAM D;  2UXC C;  5A2Q D;  1P7D A;  3L95 X;  1MDF A;  4D4G A;  1PG3 A;  3VNS A;  4HPV A;  1TH5 A;  4L4Q A;  4LF8 C;  1P7L A;  5BSW A;  1AIH A;  1ULT A;  5A1I A;  3KXW A;  1IBM C;  4RM3 A;  5K8F A;  3EQ6 A;  4NXM C;  2D1S A;  4B3R C;  2A3V A;  3TR3 A;  4IR7 A;  2F4V C;  4JI4 C;  4FUT A;  1UWD A;  5FLX D;  1HNZ C;  2P20 A;  4DUZ C;  4B3M C;  1PVR A;  4X62 C;  2QW0 X;  4JI1 C;  3LUS A;  4GKK C;  1N32 C;  4BC9 A;  3CQ1 A;  4MTN A;  1M6X C;  4ODJ A;  2PRO A;  2E5L C;  4D4I A;  5BUQ A;  3A25 A;  4LF9 C;  2CXC A;  2E8C A;  4PZP A;  2PN2 A;  2CU6 A;  5GTD A;  5IWA C;  1XRB A;  1YJ7 A;  5AE1 A;  1AMU A;  4RMN A;  3TQI A; 
#chains in the Genus database with same CATH homology
 1CRX A;  5CRX A;  1F44 A;  1DRG A;  5DCF A;  3VCF A;  1PVR A;  3UXU A;  1Z1B A;  1PVP A;  3MGV A;  5DOR A;  1Q3U A;  2HOI A;  1OUQ A;  1AIH A;  1AE9 A;  1XNS A;  1XO0 A;  1MA7 A;  3CRX A;  1KBU A;  3C29 A;  4CRX A;  1A0P A;  1M6X C;  5C6K A;  2A3V A;  3C28 A;  3NKH A;  1P7D A;  1M6X A;  1Q3V A;  2CRX A;  2HOF A;  1FLO A;  1NZB A;  4A8E A;  1P4E C;  1Z19 A;  4DKS A;  1PVQ A;  1P4E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1P4EC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations