The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
125
|
sequence length |
421
|
structure length |
399
|
Chain Sequence |
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb |
| molecule tags |
Ligase, lyase/dna
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Symmetrized FRT site
|
| total genus |
125
|
| structure length |
399
|
| sequence length |
421
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2002-07-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF03930 | Flp_N | Recombinase Flp protein N-terminus |
| C | PF05202 | Flp_C | Recombinase Flp protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) |
#chains in the Genus database with same CATH superfamily 1XO0 A; 2HOI A; 1A0P A; 5DOR A; 4DKS A; 3NKH A; 2HOF A; 1FLO A; 1PVP A; 4A8E A; 1Q3V A; 3CRX A; 4CRX A; 1P4E A; 1KBU A; 1CRX A; 5DCF A; 1P4E C; 3MGV A; 1MA7 A; 1P7D A; 1Z19 A; 1AE9 A; 1PVQ A; 1XNS A; 1PVR A; 1OUQ A; 2A3V A; 3C29 A; 1NZB A; 3UXU A; 1M6X A; 5C6K A; 1M6X C; 1DRG A; 1F44 A; 1AIH A; 3C28 A; 3VCF A; 1Z1B A; 2CRX A; 5CRX A; 1Q3U A; #chains in the Genus database with same CATH topology 2HOI A; 1QM4 A; 2QL8 A; 2OPL B; 4OXI A; 1XNQ C; 4FUQ A; 4G36 A; 2E0G A; 2QVX X; 2D28 C; 1XMQ C; 3E7W A; 4IZ6 A; 3TQI A; 4KHP C; 3EQ6 A; 1IB8 A; 1M6X C; 1GPM A; 2CXC A; 1L2F A; 3PRO C; 5LMN C; 1AMU A; 2HHH C; 4DV2 C; 4RMN A; 4JV5 C; 1O90 A; 4LFC C; 1FJG C; 4XX2 A; 5KYT A; 4NXN C; 1ML8 A; 4E0Y A; 4D57 A; 3NPD A; 4JI2 C; 3PBK A; 1WH9 A; 3GKU A; 1I94 C; 2WP0 C; 4DV4 C; 5BSR A; 4JI3 C; 2M5H A; 5T8S A; 5C6K A; 4DV1 C; 2ASB A; 1USP A; 3VNQ A; 3LAX A; 1LCI A; 1MXA A; 1WF3 A; 4DR2 C; 3VNS A; 3LGX A; 5CZX A; 1J5E C; 4DR4 C; 4K0K C; 3DAY A; 1T5D X; 3AF6 A; 4B3T C; 4MTN A; 3A25 A; 2OBV A; 3K6R A; 4F41 A; 2CU6 A; 2VSQ A; 3FCC A; 3IPL A; 2DHM A; 4GXQ A; 2PT7 G; 4B3R C; 1QWI A; 4BC7 A; 1N34 C; 3CW9 A; 2D7V A; 4PHT A; 3ETO A; 1BA3 A; 3VNR A; 2HOF A; 1LQL A; 4BBY A; 2UUA C; 4ZJZ A; 2JMP A; 5DCF A; 5BSU A; 2Y27 A; 3RG2 A; 1PVR A; 3AF5 A; 4YHH C; 2QW0 X; 1HNX C; 1XRB A; 4LE5 A; 1Q3U A; 3CJE A; 2Y4O A; 2UXC C; 4ODJ A; 2P02 A; 4R1M A; 4DR3 C; 3SQI A; 1PG4 A; 4CRX A; 4DR5 C; 1TH5 A; 2P2F A; 2KZ0 A; 2ATW A; 1XRA A; 1JOS A; 2E8E A; 5A2Q D; 4D56 A; 5K85 A; 3UZ0 A; 3CQ2 A; 3UXU A; 2V7B A; 1HNW C; 3VCF A; 4RM2 A; 5CZV A; 2DYJ A; 4ACO A; 5KEI A; 4DV6 C; 3N54 B; 2PRO A; 2V6E A; 3IML A; 2F4V C; 4GKK C; 2MM9 A; 1USP B; 2KZF A; 3RV2 A; 4RVO A; 3JAM D; 5BR8 C; 2ZM6 C; 3SO4 A; 1PVQ A; 1XNS A; 2E8C A; 5LCI A; 3UX2 A; 4AQY C; 4DR7 C; 5ADZ A; 3CQ3 A; 5E7Q A; 3R9W A; 2D1T A; 1XRC A; 4LF7 C; 4YY3 C; 3LUS A; 4DR6 C; 1UWD A; 4BC9 A; 4PZP A; 2VQF C; 5DV9 A; 3GR0 A; 1OUQ A; 1FUG A; 2DPL A; 4TPS B; 4LF9 C; 1O9T A; 2NCL A; 3S82 A; 5AE1 A; 4WV3 A; 4IR7 A; 3OTO C; 1XS3 A; 2P2M A; 3TUF A; 4JI4 C; 2ONF A; 5KYV A; 4B3S C; 1T5H X; 1VLA A; 4GS5 A; 1PA4 A; 2Z51 A; 4PUG A; 1N2F A; 3E7X A; 4KTV A; 3LNV A; 3UEB A; 1IBK C; 4F43 A; 2A3V A; 2P20 A; 3TDE A; 1PU1 A; 4X66 C; 2UU9 C; 4GKJ C; 4G37 A; 5IFI A; 1WCJ A; 3R9X A; 2CY1 A; 4LFA C; 5AE3 A; 3C5E A; 1NY8 A; 3G7S A; 1Q3V A; 3L8C A; 3R44 A; 1MD9 A; 2BH1 X; 4DWP A; 5AE2 A; 1HR0 C; 4DUZ C; 4KTT A; 1XMO C; 4DV0 C; 4PRO C; 1UKK A; 2ZZM A; 3AY0 A; 5BUS A; 1MDF A; 1XO0 A; 4PUI A; 3GR1 A; 4DCV A; 2OO4 A; 4JI7 C; 3NKH A; 4ISB A; 4DV7 C; 2D1Q A; 4L7I A; 5K8F A; 2E7G A; 1N36 C; 1P4E C; 3A9V A; 1MA7 A; 1V25 A; 4DCU A; 5JRH A; 5A19 A; 1NYE A; 1RG9 A; 4X65 C; 1M6X A; 1MXC A; 1K0R A; 2AYA A; 1Z1B A; 2MMA B; 4JI5 C; 2YWC A; 5CRX A; 2XR1 A; 3L95 X; 5A1G A; 5IWA C; 2HJG A; 3UX3 A; 4JI1 C; 4LF8 C; 2QVY X; 4D4G A; 4DV3 C; 3IEV A; 3FCE A; 1XHJ A; 5BUQ A; 4LF6 C; 1N32 C; 3ETC A; 4JI8 C; 2YWB A; 5BSW A; 2Y4N A; 1RY2 A; 1XNR C; 1P7D A; 1AE9 A; 4GXR A; 3DLP X; 4L4Q A; 4DG9 A; 4DCS A; 1EGA A; 1V26 A; 3TR3 A; 1IBL C; 3C28 A; 1HH2 P; 4G1I A; 4HPV A; 2EGT A; 3T79 A; 4X62 C; 4R1L A; 4D4I A; 1A0P A; 3DHV A; 5BUR A; 4EAT A; 3A26 A; 1PVP A; 1MXB A; 2WD9 A; 3LNO A; 1O92 A; 2UUB C; 3MGV A; 5IT9 D; 4RM3 A; 4NXM C; 3A4I A; 4I9F A; 2P2J A; 3B7W A; 2ZZN A; 4E0Z A; 4JYA C; 3CW8 X; 1ZB9 A; 1N33 C; 1ULT A; 1YJ7 A; 3A9U A; 4NOZ A; 2D1R A; 4DG8 A; 4A8E A; 4BCA A; 4R0M A; 5H9U A; 4E0P A; 1KBU A; 2VZE A; 3GPC A; 1MDB A; 1KKG A; 2YCB A; 1Z19 A; 2OPL A; 4DCT A; 3I08 A; 5BSM A; 4MH4 A; 3O2E A; 2UXB C; 4DUY C; 1PG3 A; 4U5Y D; 4FTF A; 2CRX A; 5LMU C; 1VEH A; 4OYC A; 1FLO A; 2VQE C; 2UXD C; 2E5L C; 3I07 A; 2P2Q A; 3IEU A; 4JI6 C; 1P4E A; 3J81 D; 2M5O A; 4FUT A; 1P7L A; 2UUC C; 3UOW A; 1NZB A; 5GTD A; 3N2Q A; 1F44 A; 2PN2 A; 2D27 A; 4X64 C; 4BSZ A; 2E8F A; 4E0G A; 4LFB C; 3NYR A; 4NDN A; 5DOR A; 4DKS A; 3KXW A; 4K0B A; 5T8T A; 4PUH A; 3CQ1 A; 3J80 D; 5FLX D; 3EER A; 4DR1 C; 3T1Y C; 1HNZ C; 4L2Z A; 4JM1 A; 1IBM C; 4I9G A; 1DRG A; 1AIH A; 1MKY A; 4RLQ A; 4DV5 C; 4OX9 C; 4ZLP A; 4E10 A; 3PES A; 2YX1 A; 4E0J A; 4RLF A; 4B3M C; 4LF4 C; 3CRX A; 5A1I A; 4RVN A; 3T1H C; 1CRX A; 4LF5 C; 2BJO A; 4JI0 C; 1ZB8 A; 5BSV A; 1V60 A; 3C29 A; 4WS9 A; 3H2T A; 2D1S A; 3NI2 A; 2JNV A; 3NYQ A; 1O93 A; 2QVZ X; 2KDN A; 5BST A; 2MCQ A; 2P2B A; #chains in the Genus database with same CATH homology 1XO0 A; 2HOI A; 1A0P A; 5DOR A; 4DKS A; 3NKH A; 2HOF A; 1FLO A; 1PVP A; 4A8E A; 1Q3V A; 3CRX A; 4CRX A; 1P4E A; 1KBU A; 1CRX A; 5DCF A; 1P4E C; 3MGV A; 1MA7 A; 1P7D A; 1Z19 A; 1AE9 A; 1PVQ A; 1XNS A; 1PVR A; 1OUQ A; 2A3V A; 3C29 A; 1NZB A; 3UXU A; 1M6X A; 5C6K A; 1M6X C; 1DRG A; 1F44 A; 1AIH A; 3C28 A; 3VCF A; 1Z1B A; 2CRX A; 5CRX A; 1Q3U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
