The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
66
|
structure length |
66
|
Chain Sequence |
VPVGSDCEPKLCTMDLVPHCFLNPEKGIVVVHGGCALSKYKCQNPNHEKLGYTHECEEAIKNAPRP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor
pubmed doi rcsb |
| molecule keywords |
Oryctin
|
| molecule tags |
Hydrolase inhibitor
|
| source organism |
Oryctes rhinoceros
|
| total genus |
10
|
| structure length |
66
|
| sequence length |
66
|
| ec nomenclature | |
| pdb deposition date | 2010-01-14 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | Dna Ligase; domain 1 |
#chains in the Genus database with same CATH superfamily 2KSW A; #chains in the Genus database with same CATH topology 4EEQ A; 2BR0 A; 2PVP A; 4JUZ A; 3PO2 G; 4DV6 H; 3HBL A; 5L1L A; 3T5J A; 5EOY A; 2VUG A; 5CA0 F; 4ME6 A; 4X65 H; 5KFQ A; 4HQ6 A; 5HV6 A; 5C44 G; 4QIW A; 3IN5 A; 4ED2 A; 2UXB H; 1VS0 A; 4ECV A; 2R8J A; 2GPS A; 4EFB A; 5DGB A; 2VPQ A; 4LFA H; 3UFX B; 2PBZ A; 1HNZ H; 1WCM A; 3R5X A; 2R8H A; 2JEG A; 1DV1 A; 1GSO A; 1S68 A; 3SE7 A; 2ASJ A; 2NVX A; 3EPG A; 4AYB A; 3GIL A; 2C35 B; 4UCU A; 3T5K A; 3GIQ A; 4DL5 A; 1XDN A; 4PWQ A; 5IWA H; 2R7M A; 4WD3 A; 4NXN H; 2W9A A; 2XCP A; 3H4B A; 1IBK H; 1KJ9 A; 4DLK A; 5KG2 A; 3BJY A; 3MWD A; 2ZDH A; 2XIG A; 5KFG A; 5IP7 G; 2RF4 A; 4O3P A; 5EWF A; 4TQR A; 3GTJ A; 4MV8 A; 4UCV A; 3PW2 A; 5L1I A; 4HNT A; 2M05 A; 2AQ4 A; 5KT3 A; 1KJJ A; 3R5F A; 4BY7 G; 5L1J A; 1R9T A; 5KFU A; 3GV7 B; 4GKJ H; 4RZQ A; 4JV1 A; 1E4E B; 1TWH A; 2P0A A; 2W6O A; 1RYR A; 2JA6 A; 2CW8 A; 3M9M B; 3OUZ A; 2WB1 A; 4ZQI A; 2AGP A; 4LSX A; 2JEI A; 4QJF A; 1Z2N X; 1HR0 H; 5BMV F; 2W71 A; 5L9X A; 4XYL B; 5HBR B; 3PW4 A; 3WO0 A; 2DPI A; 3RAQ A; 3KHG A; 1B6R A; 4ED7 A; 2JEF A; 2R82 A; 5KG5 A; 2J9G A; 3T5L A; 2C00 A; 5DQG A; 4EBC A; 1J5E H; 4JYA H; 1I6U A; 1DV2 A; 4A3J G; 1A0I A; 4ECT A; 2J6U A; 3GID A; 3RUP A; 4ZHQ F; 3EYY A; 5KT6 A; 4ECZ A; 1KBL A; 4O3R A; 2VA3 A; 4EBE A; 4X62 H; 4EGQ A; 2OLS A; 5J2U F; 4DV3 H; 2UVW A; 2W9C B; 4B3R H; 2V9W A; 1UC8 A; 2FB9 A; 1GLV A; 2WAQ A; 2RGR A; 2NU7 B; 3RV3 A; 5LMN H; 5KT7 A; 1CQI B; 1Y1W G; 1FVI A; 2YS6 A; 4A3C G; 4JI3 H; 5C8Y F; 5KFE A; 2X0S A; 5C1P A; 2W8L A; 2ZJT A; 3FKI G; 1S03 G; 2O03 A; 2W7P A; 2NVY A; 2XGP A; 4BBR G; 1S97 A; 1BXR A; 4QW9 A; 1JDB B; 4IWX A; 4ECX A; 4DL6 A; 3BA8 A; 4C2M A; 4RB1 A; 1TA8 A; 3KAJ A; 2DIK A; 5FLX W; 2C2E A; 4QWA A; 4DV1 H; 5JH7 F; 1KC7 A; 5D1O B; 4UCO A; 1TAE A; 5KFD A; 4DR3 H; 2UUB H; 1M7J A; 5EWE A; 2ZDG A; 4I55 F; 2UVR A; 1V9P A; 2R92 G; 1KJI A; 5KFI A; 3V6H A; 3OHB A; 4A3E G; 3M4I A; 4B3T H; 4DR1 H; 5FD5 A; 3E5N A; 5KFJ A; 4Q0Y A; 3KHH A; 4R8U A; 3H0G A; 2XC9 A; 2JA7 G; 3QFF A; 1X9N A; 2HJW A; 3PVX A; 2FPP B; 3HKZ A; 1ZHS A; 2ASD A; 3PR4 A; 3SI8 A; 3KTM A; 3PR5 B; 4TV8 F; 3RFC A; 3RBE A; 2RDJ A; 4YJ2 F; 4FM9 A; 3JRX A; 3RBD A; 2NU8 B; 3PW0 A; 4LF7 H; 1TWF A; 3OUU A; 4YY3 H; 4J9M A; 3GV5 B; 5KFL A; 3ETH A; 2YS7 A; 4RB2 C; 3N43 B; 4XYM B; 3RB3 A; 3DF7 A; 2FLP A; 4EGJ A; 4OX9 H; 2R8I A; 4TUY F; 3BG5 A; 4ECW A; 2YU9 A; 5KFN A; 5CB4 F; 4FBT A; 2XCL A; 2FK1 A; 5D1P A; 1GSA A; 3GTM A; 4IRD A; 4DR6 H; 5KFO A; 2CQY A; 1T3N A; 4XX0 B; 5LMU H; 4HYK A; 1CE8 A; 1M6V A; 1B6S A; 2CZG A; 4O2B F; 4ZI7 F; 5BR8 H; 4J9N A; 5LP6 F; 4MV6 A; 1TWG A; 4LF6 H; 3CQZ A; 4MV1 A; 3JZI A; 4A3K G; 2AGO A; 1S0N A; 2C28 A; 5KFX A; 2KSW A; 3FMA A; 4BBS G; 2VA2 A; 5FLM G; 3QZ7 A; 2WE6 A; 3RIZ A; 5IYC G; 5CAE B; 3HB9 A; 3HOX G; 4EEY A; 4EG0 A; 1N33 H; 2JA7 A; 1T36 A; 1PK8 A; 2CW7 A; 3TIG A; 4Y8V B; 5JQW A; 4C5B A; 4YR0 A; 1XMO H; 4MA0 A; 1I3Q A; 3RF2 A; 1IOW A; 4GC6 A; 5EDW A; 5C4X G; 3V4Z A; 4RNN A; 3JSN A; 4X66 H; 4MA5 A; 3J80 W; 3T1H H; 3K5H A; 4PDB A; 3I4M G; 4YBZ B; 4U7C A; 3U9T A; 4JI5 H; 2R92 A; 4IRC A; 4HNU A; 3Q8S B; 5F9L A; 5IYB G; 2R8K A; 2VUM G; 3JRW A; 5IYD G; 4L1K A; 1Y1V A; 3MR5 A; 1EYZ A; 2YRW A; 3GQC A; 1EUC B; 1W96 A; 2PMZ E; 1DGS A; 1ULZ A; 5KFC A; 4DL4 A; 5KKN B; 2BQU A; 2WTF A; 1CS0 A; 1RJP A; 1EZ1 A; 1TWC A; 4IAJ A; 1VAJ A; 4YAJ B; 4DR4 H; 3OTO H; 2W8K A; 1Y14 B; 5KG0 A; 4DR5 H; 1S9F A; 2VPS A; 4YJ3 F; 3C0F B; 2F4V H; 3HOV G; 1MZB A; 3FDS A; 3QZ8 A; 4C5A A; 3T5H A; 3Q8R B; 4O4H F; 1JX4 A; 1TWA A; 4ZOL F; 5IT9 W; 1N32 H; 2I87 A; 3Q2O A; 3BAA A; 2FJZ A; 1ZQ7 A; 4FU0 A; 4ED8 A; 3PO3 G; 3MR6 A; 5JUM A; 5A2Q W; 4YR3 A; 1N56 A; 2HHH H; 3RV4 A; 5KFA A; 3H3V H; 4A3G G; 4DR7 H; 1ZET A; 1PX2 A; 4GC7 A; 2QYZ A; 2ALZ A; 4YR2 A; 3MJF A; 5KG4 A; 2VUM A; 2R86 A; 3MR3 A; 4X64 H; 2IMW P; 2OH2 A; 2W57 A; 4O4L F; 5H80 A; 4JV0 A; 1K1Q A; 4JV5 H; 3NGD A; 5KG7 A; 4HR7 A; 2ZDQ A; 1VKZ A; 3L4K A; 1V51 A; 4MV7 A; 5GON F; 4QWC A; 3KHL A; 2W6M A; 2AU0 A; 4BWS C; 3VPC A; 1JDE A; 4HNV A; 5C5J A; 4QWE A; 4FS2 A; 3MFI A; 1S0O A; 5KFY A; 4JV2 A; 2E2H A; 3RAX A; 2I80 A; 1RJQ A; 5LA6 F; 1C3O A; 1K1S A; 2DWC A; 4LH6 A; 4R7R A; 4DV7 H; 4EYI B; 2DPJ A; 1W93 A; 4TQS A; 4NLG A; 4G3I A; 5KFH A; 1FKA H; 5DG8 A; 5KT5 A; 3TQ1 A; 3RB4 A; 5DQI A; 2J6T A; 4U6P A; 5KFV A; 3HXL A; 3V4S A; 1IBM H; 1P8L A; 2PN1 A; 4AQY H; 4I4T F; 4R8U B; 3N40 P; 5DGA A; 4ED3 A; 2YRX A; 3H40 A; 4J9L A; 2FLL A; 4QW8 A; 4RAZ A; 3VPB A; 2C22 A; 4MV3 A; 2ASL A; 1I7L A; 2YCH A; 1SFO A; 1GGO A; 2FK3 A; 4A3B G; 3HOY G; 1UC9 A; 1EUD B; 4DV4 H; 1KEE A; 5DQH A; 4GLX A; 4IWY A; 1ZHQ A; 3HOZ G; 5DG7 A; 1XNQ H; 1O75 A; 2QK4 A; 2VR1 A; 4F50 A; 2Q2T A; 4Q8E A; 4ECY A; 5DLF A; 1JKJ B; 2W9B A; 1RK6 A; 4YHH H; 1RJR A; 4DV0 H; 4IR1 A; 4LF5 H; 2JA5 G; 4DV2 H; 5K2M A; 1JLL B; 1A9X A; 3R23 A; 4XZ3 B; 3LP8 A; 4QWB A; 4FS1 A; 3GTK A; 3TII A; 1XNR H; 3PW7 A; 4IR9 A; 3I12 A; 4IZO A; 1KJ8 A; 1IBL H; 4A3D G; 3V6K A; 4ECS A; 1Y1W A; 1C30 A; 3G8C A; 3FKI A; 2V4R A; 4MV9 A; 3GIJ A; 4EBD A; 1HNW H; 3MR2 A; 2Y0S E; 3PN1 A; 2C2R A; 3RJ0 A; 3G6X A; 3K5I A; 3BA9 A; 2NUA B; 2R84 A; 1N36 H; 2R85 A; 1B33 N; 4UCS A; 4DL2 A; 5KFT A; 3J81 W; 4ECR A; 1CQJ B; 2AGQ A; 5JVD F; 2BQ3 A; 3Q8P B; 3M9N B; 1SCU B; 4C5C A; 2DLN A; 4UCR A; 4ED1 A; 4ED0 A; 4DL7 A; 3GTO A; 4RNM A; 2UXD H; 3K3P A; 1AUV A; 3H4D A; 2R8G A; 4LFC H; 1GSH A; 5LOV F; 4O3Q A; 2E5L H; 4UCT A; 3KXY T; 1WCM G; 1VBG A; 3VPD A; 4ETS A; 4RB3 C; 1S10 A; 2R7N A; 5T14 A; 3EPI A; 4GKK H; 2YZG A; 4TV9 F; 3K3V A; 4F4W A; 2RGV A; 2HGS A; 5FPR A; 3U9S A; 4CC5 A; 1Z2O X; 3BQ0 A; 3PZP A; 2R6F A; 3N44 B; 4J9S A; 4B3S H; 4MTE A; 3GTG A; 4F4Y A; 4BY1 G; 3TIN A; 3OSP A; 5D8D A; 4Q8F A; 4LF4 H; 1BNC A; 2PMZ A; 4O4I F; 2FP4 B; 5JVL A; 2NU9 B; 2UU9 H; 3UQ8 A; 4O3O A; 4DR2 H; 3N6X A; 5EZY F; 1L2Z A; 2XCA A; 3N42 B; 3H20 A; 3V6J A; 3GIP A; 2W6Z A; 5KFB A; 2ATL A; 3J7A K; 3L4J A; 4J9Q A; 1SYX B; 3GII A; 3HOU G; 4J9P A; 1RYS A; 3RB6 A; 2UUA H; 5KFF A; 4RUA A; 1V4Y A; 2YL2 A; 2W7O A; 2GLT A; 3LML A; 3RTX A; 3F8N A; 4LMY A; 3GV8 B; 2RDI A; 2ZM6 H; 1Z2P X; 4DL3 A; 2W6N A; 2FKL A; 2XD4 A; 5FD6 A; 3BAB A; 4UFZ A; 1RK5 A; 2JA6 G; 3LWB A; 2FLN A; 5J2T F; 1I7N A; 4FBU A; 4YAK B; 2J6S A; 5IYZ F; 1VBH A; 4RAY A; 1HNX H; 4A3M G; 1BGW A; 4QIW E; 2VQD A; 4A3L G; 5FJ8 G; 2IP4 A; 3Q8Q B; 3RB0 A; 4ECU A; 3ORQ A; 1JIH A; 2UVU A; 4IHJ F; 2NU6 B; 1T94 A; 1E4G T; 3L2P A; 1WR2 A; 4AYB E; 4DV5 H; 2UUC H; 2HVS A; 1S0M A; 2YW2 A; 1WSC A; 4MTD A; 4A3F G; 2IA6 A; 2B63 G; 1B04 A; 2V59 A; 2R7Z G; 4K0K H; 3OHA A; 4A93 G; 3GTQ A; 4E4T A; 4YQW A; 3MFH A; 4J9R A; 1AUX A; 5LYJ F; 4CC6 A; 2C2D A; 1IOV A; 2HVQ A; 4Q45 A; 4J9O A; 4RZR A; 3JAM W; 5KG3 A; 1E4F T; 4KHP H; 2FPI B; 2V58 A; 5FPO A; 2Q2U A; 5IP9 G; 4DUY H; 2WDT A; 2W6Q A; 4J0M A; 1I50 A; 3WO1 A; 3JSL A; 1N48 A; 4JI8 H; 4LF9 H; 3GLK A; 5BPH A; 3BQ1 A; 2R93 G; 2YZM A; 2I8C A; 4O3S A; 3N41 B; 2CKZ B; 1E4E A; 5DG9 A; 2OWO A; 1WH2 A; 2WB1 E; 4F4Z A; 3AYH B; 4M9U A; 2W9B B; 2R87 A; 2V5A A; 3HOW G; 5KG6 A; 3H0G G; 3Q1K A; 4MV4 A; 4I7H A; 3WNZ A; 4O2A F; 5C1O A; 4RNO A; 4A3I G; 2B63 A; 1DIK A; 3MWE A; 2R7Z A; 2YZN A; 4YP3 A; 4F4X A; 5I47 A; 2W6P A; 2JEJ A; 1GYF A; 2BQR A; 2HVR A; 4JI4 H; 2WYO A; 4BXX G; 3GIK A; 4MAM A; 5EWG A; 3G6Y A; 4J9K A; 3GTL A; 2MCT A; 3GIM A; 2Y0S A; 1M0W A; 2VQE H; 5LXT F; 4LF8 H; 3ORR A; 5KT2 A; 1SEI A; 5KFP A; 5C3E G; 3T1Y H; 1I94 H; 2UXC H; 3KAL A; 2UVV A; 1M0T A; 5CA1 F; 5KFS A; 5DLG A; 2WAQ E; 2FE3 A; 1AN7 A; 2W9C A; 4NXM H; 2JA8 G; 2R93 A; 3VMM A; 3I4N G; 3G6V A; 1JXL A; 2VQF H; 3PW5 A; 3N8D A; 2FMA A; 4ECQ A; 1XMQ H; 2W70 A; 4A2B A; 5KT4 A; 1N34 H; 3RGX A; 4LSA A; 5LL6 b; 1OWT A; 5BPF A; 4Q43 A; 1K83 A; 4JI1 H; 2FK2 A; 4JI0 H; 3R5H A; 1BJT A; 2R7K A; 4A2A A; 3OSN A; 4LH7 A; 5D1O A; 2R7L A; 3GTP A; 1KJQ A; 3RGZ A; 5F9N A; 4JI2 H; 4EFE A; 3CVZ A; 4RU9 A; 4LFB H; 3KAK A; 2DZD A; 1EHI A; 3KHR A; 2FPG B; 2YYA A; 5L1K A; 4EYH B; 1FJG H; 4DUZ H; 2V4Q A; 4JI7 H; 4ED6 A; 4YB8 B; 4WBN F; 2E2I A; 5KX5 F; 5KFZ A; 2JA5 A; 5KFM A; 3BQ2 A; 4RUC A; 4M7E A; 3HKZ E; 5KG1 A; 4I50 F; 3TQT A; 4IRK A; 1GO3 E; 2VOB A; 1Y1V G; 4JI6 H; 2GPW A; 1UNN C; 2SCU B; 3ETJ A; 2XGQ A; 3MWM A; 4B3M H; 4RB0 A; 5KFR A; 4Q44 A; 4APM A; 5KFW A; 4QWD A; 5KFK A; 2IBK A; 3IG0 A; 4O3N A; 3M9O B; #chains in the Genus database with same CATH homology 4EEQ A; 1E4G T; 3L2P A; 4R7R A; 1ZHS A; 4LH6 A; 4DV7 H; 4DV6 H; 1FKA H; 2UUC H; 4DV5 H; 4FM9 A; 2HVS A; 5EOY A; 2VUG A; 4LF7 H; 4YY3 H; 3HXL A; 4MTD A; 1IBM H; 4X65 H; 1P8L A; 4AQY H; 2UXB H; 3N40 P; 1B04 A; 4RB2 C; 3N43 B; 1VS0 A; 4K0K H; 3DF7 A; 4EFB A; 4RAZ A; 4LFA H; 4OX9 H; 1HNZ H; 2YCH A; 1S68 A; 4CC6 A; 5D1P A; 4DV4 H; 4DR6 H; 2HVQ A; 4UCU A; 5LMU H; 1ZHQ A; 4GLX A; 3JAM W; 1XNQ H; 1O75 A; 5BR8 H; 1XDN A; 1E4F T; 2Q2T A; 4KHP H; 4LF6 H; 5FPO A; 5IWA H; 2Q2U A; 4DUY H; 2WDT A; 4YHH H; 4J0M A; 4NXN H; 4DV0 H; 4LF5 H; 4DV2 H; 3JSL A; 2KSW A; 1IBK H; 4JI8 H; 4LF9 H; 3FMA A; 2WE6 A; 2XIG A; 3RIZ A; 1N33 H; 3N41 B; 1XNR H; 2OWO A; 4UCV A; 1IBL H; 1WH2 A; 2CW7 A; 1XMO H; 3RF2 A; 4MV9 A; 1HNW H; 3JSN A; 3PN1 A; 4X66 H; 3T1H H; 3J80 W; 3RJ0 A; 4I7H A; 4JYA H; 3BA9 A; 4PDB A; 1N36 H; 4JI5 H; 4GKJ H; 4RZQ A; 1GYF A; 4UCS A; 3J81 W; 2CW8 A; 2HVR A; 4JI4 H; 2WYO A; 2UXD H; 4UCR A; 4LSX A; 2MCT A; 1Z2N X; 1M0W A; 1DGS A; 2VQE H; 1HR0 H; 4LFC H; 4LF8 H; 2E5L H; 4UCT A; 3KXY T; 4ETS A; 4IAJ A; 4RB3 C; 1SEI A; 3T1Y H; 1I94 H; 4DR4 H; 4GKK H; 3OTO H; 3KAL A; 2UXC H; 1M0T A; 3K3V A; 2RGV A; 2HGS A; 5FPR A; 4CC5 A; 2VPS A; 4DR5 H; 1Z2O X; 1AN7 A; 2FE3 A; 3C0F B; 1MZB A; 1J5E H; 4NXM H; 3N44 B; 2F4V H; 1I6U A; 1A0I A; 4B3S H; 4MTE A; 2VQF H; 5IT9 W; 1N32 H; 3BAA A; 4LF4 H; 1XMQ H; 3EYY A; 2UU9 H; 3UQ8 A; 5A2Q W; 4DR2 H; 3N6X A; 4X62 H; 4A2B A; 1N34 H; 3RGX A; 4LSA A; 5LL6 b; 4DV3 H; 2HHH H; 4JI1 H; 1L2Z A; 3N42 B; 3H20 A; 4JI0 H; 4B3R H; 1BJT A; 4A2A A; 3L4J A; 2RGR A; 4LH7 A; 5D1O A; 5LMN H; 1SYX B; 3J7A K; 4DR7 H; 3RGZ A; 1FVI A; 4JI2 H; 4EFE A; 3CVZ A; 4JI3 H; 4LFB H; 3KAK A; 2ZJT A; 2UUA H; 1S03 G; 2O03 A; 1FJG H; 4X64 H; 4DUZ H; 3LML A; 3RTX A; 2W57 A; 3BA8 A; 3F8N A; 4LMY A; 4JI7 H; 4RB1 A; 4JV5 H; 1TA8 A; 3KAJ A; 5FLX W; 2ZM6 H; 1Z2P X; 4DV1 H; 4M7E A; 5FD6 A; 3L4K A; 5D1O B; 3BAB A; 1TAE A; 4MV7 A; 4UCO A; 4UFZ A; 4DR3 H; 2UUB H; 2VOB A; 1V9P A; 4BWS C; 4JI6 H; 3MWM A; 4B3T H; 3M4I A; 4B3M H; 4RAY A; 4RB0 A; 4DR1 H; 1HNX H; 5FD5 A; 1BGW A; 4Q0Y A; 4APM A; 3IG0 A; 1X9N A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
