The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
167
|
sequence length |
474
|
structure length |
474
|
Chain Sequence |
PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRIDVAGKVVSPGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSAGLPHDERPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSATFEHPTERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLNR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
D-aminoacylase
|
| publication title |
The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
pubmed doi rcsb |
| source organism |
Alcaligenes faecalis
|
| molecule tags |
Hydrolase
|
| total genus |
167
|
| structure length |
474
|
| sequence length |
474
|
| ec nomenclature |
ec
3.5.1.81: N-acyl-D-amino-acid deacylase. |
| pdb deposition date | 2003-11-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07969 | Amidohydro_3 | Amidohydrolase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Urease, subunit C; domain 1 | Urease, subunit C, domain 1 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | ||
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | D-aminoacylase. Domain 3 |
