The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
85
|
structure length |
80
|
Chain Sequence |
IMDEIVNLQKEVSLEEAERYANIASYGDGILLSVHDSTGYRAPEVYCCGEKPWEVYACNRGANLISVNQFEFYFRIEVEG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.
pubmed doi rcsb |
| molecule keywords |
Uncharacterized protein AF_1514
|
| molecule tags |
Unknown function
|
| source organism |
Archaeoglobus fulgidus dsm 4304
|
| total genus |
17
|
| structure length |
80
|
| sequence length |
85
|
| ec nomenclature | |
| pdb deposition date | 2008-01-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF18505 | DUF5619 | Domain of unknown function (DUF5619) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | Dna Ligase; domain 1 |
#chains in the Genus database with same CATH superfamily 3C0F B; #chains in the Genus database with same CATH topology 3SI8 A; 2W7P A; 4Q8F A; 5CB4 F; 4EGQ A; 3JAM W; 5HV6 A; 5KFP A; 4X64 H; 4GC7 A; 2R82 A; 2W6N A; 4MV3 A; 2VPQ A; 5C5J A; 4ED3 A; 4YHH H; 1DV1 A; 3GIJ A; 2NU7 B; 3I4N G; 2W9B B; 1P8L A; 4O4H F; 4RZR A; 3N6X A; 2C00 A; 3T1Y H; 4L1K A; 1M0W A; 3VPB A; 1I50 A; 2W7O A; 2HGS A; 4Y8V B; 4LF4 H; 4IRK A; 4ECU A; 1Y1V G; 1HNZ H; 2WB1 A; 4A3C G; 3H40 A; 5CAE B; 4DLK A; 3GLK A; 3UQ8 A; 2WB1 E; 5KFV A; 2M05 A; 3GIP A; 4RB1 A; 4MAM A; 2ASD A; 1VBH A; 5C8Y F; 5JUM A; 1B04 A; 4KHP H; 4TUY F; 5IWA H; 2J6U A; 4DR7 H; 3TIN A; 4LH7 A; 4YB8 B; 4O4L F; 2WAQ E; 2YZG A; 4O4I F; 2NU9 B; 5FPO A; 4O2A F; 1KC7 A; 3NGD A; 4A93 G; 5IYB G; 1K83 A; 3ORQ A; 2SCU B; 3V6J A; 4IR9 A; 4G3I A; 2R87 A; 2RDI A; 3RB4 A; 3KHL A; 2YL2 A; 4RUA A; 1BGW A; 3LWB A; 4EYI B; 2I8C A; 3QZ7 A; 1Z2P X; 1TA8 A; 3G6X A; 4E4T A; 2C28 A; 3Q2O A; 2UUC H; 2NUA B; 5JH7 F; 1S9F A; 1T36 A; 4TQR A; 2FJZ A; 3T5L A; 4LF6 H; 1IBL H; 5KFF A; 5KFQ A; 1JXL A; 2DIK A; 2AU0 A; 4U6P A; 2XC9 A; 2FLN A; 3MFH A; 4J9R A; 2XCL A; 2FKL A; 3N43 B; 4DR1 H; 4RZQ A; 5L1K A; 1RK6 A; 2R8J A; 5KFW A; 1VS0 A; 3RF2 A; 2FPI B; 2IP4 A; 2QYZ A; 3HKZ E; 4C5B A; 1XNQ H; 2QK4 A; 2W8K A; 4ZOL F; 2DWC A; 3OUU A; 3PW0 A; 5IYC G; 2AGP A; 1JLL B; 3GTO A; 2YS7 A; 2KSW A; 2UU9 H; 1GGO A; 2UVR A; 3R5H A; 3OHB A; 3FKI G; 5J2T F; 4ECT A; 1S97 A; 3GTG A; 3HOV G; 2CQY A; 4R8U B; 4A3D G; 2V4Q A; 3BA8 A; 5JVL A; 3OHA A; 3Q1K A; 5KG3 A; 2R7N A; 3SE7 A; 4YAJ B; 2R92 G; 4A3I G; 1S68 A; 2J9G A; 4HYK A; 3GID A; 5LMN H; 2V5A A; 4OX9 H; 4A2B A; 2PMZ E; 1KEE A; 4MA5 A; 2FMA A; 2XGP A; 2J6T A; 2NVY A; 1GYF A; 3GIM A; 4AYB E; 4C5A A; 4EYH B; 1J5E H; 4TQS A; 2JEF A; 3I4M G; 5KFA A; 3Q8S B; 2XD4 A; 1GSO A; 4DV1 H; 2FE3 A; 1O75 A; 4JI7 H; 5D1O A; 4X66 H; 2ZM6 H; 4J9N A; 4UFZ A; 2UXC H; 1N33 H; 4CC6 A; 2GPW A; 1JDB B; 2XCA A; 2IMW P; 1M6V A; 4FBT A; 5F9N A; 3CQZ A; 2CKZ B; 5T14 A; 1T94 A; 2YRX A; 2ATL A; 1I7N A; 3H0G G; 1ULZ A; 5KFS A; 3TII A; 3J81 W; 2W57 A; 4IZO A; 5D1P A; 2W9B A; 1JDE A; 4ED7 A; 3HBL A; 3HXL A; 3TQT A; 3RBD A; 1EUD B; 3ETJ A; 4B3T H; 2MCT A; 3QFF A; 4YR3 A; 3KXY T; 4LF8 H; 4ED0 A; 1WSC A; 1FKA H; 4BXX G; 3V4S A; 5LP6 F; 1CE8 A; 4O3Q A; 1RYR A; 3GII A; 5KFI A; 2E2H A; 4Q8E A; 1TWC A; 1BJT A; 2ZDG A; 1E4F T; 4JI4 H; 5KFR A; 4ECV A; 1PX2 A; 2W6Q A; 3L4J A; 3ORR A; 4EG0 A; 3T5H A; 3RGX A; 1XMO H; 2VOB A; 1BXR A; 5EWE A; 3PO3 G; 4GKJ H; 4J0M A; 1AN7 A; 4RNM A; 5GON F; 1FVI A; 4HQ6 A; 5EDW A; 3V6H A; 1N32 H; 3H3V H; 2FK3 A; 3GV5 B; 4JI3 H; 3PW7 A; 4LSA A; 2VUM A; 5KG4 A; 5KG5 A; 2AQ4 A; 5LA6 F; 3PN1 A; 4HR7 A; 4GKK H; 3RGZ A; 4QWE A; 4NXM H; 1JX4 A; 4QIW E; 3TIG A; 4DR4 H; 2PBZ A; 4X62 H; 2YCH A; 4JI6 H; 2BQR A; 4YP3 A; 4F4Y A; 1IBM H; 1ZET A; 5IP9 G; 3R5F A; 3N41 B; 4RB3 C; 2OH2 A; 4LH6 A; 5LOV F; 4A3E G; 5L1I A; 4RAY A; 3I12 A; 2R93 G; 4HNT A; 5CA0 F; 5L1J A; 1TWH A; 4R7R A; 4J9P A; 2CZG A; 2C2R A; 3HOY G; 1WCM A; 2C35 B; 4QJF A; 4RB2 C; 1S10 A; 4QWA A; 1UC9 A; 2YS6 A; 1IOW A; 3PR5 B; 3GIL A; 3EPI A; 4Q0Y A; 2PN1 A; 3MR3 A; 5CA1 F; 2V9W A; 5KT2 A; 3HB9 A; 3WO1 A; 5DQG A; 2FPG B; 4UCS A; 4K0K H; 2XGQ A; 3MR2 A; 4O3R A; 4LFB H; 3KHH A; 2DPJ A; 5LMU H; 1B33 N; 1S0N A; 2NVX A; 4UCU A; 4WBN F; 3HOW G; 1RJP A; 5KFJ A; 1EHI A; 2WAQ A; 2IBK A; 3OSP A; 1M0T A; 2HJW A; 2W70 A; 5KFY A; 2GLT A; 4ZQI A; 2PVP A; 5H80 A; 2Q2U A; 3M4I A; 4J9O A; 4YJ3 F; 1N36 H; 3OSN A; 4ZI7 F; 5KFL A; 2C22 A; 5DG7 A; 4YBZ B; 4DV3 H; 3RFC A; 1A9X A; 1A0I A; 3JRW A; 2YRW A; 5DG9 A; 2RDJ A; 2R7Z A; 5K2M A; 4JUZ A; 4J9L A; 3G6V A; 1Y1W G; 5BMV F; 5DLG A; 1XNR H; 5FD6 A; 1UNN C; 4ECS A; 5IYD G; 3RAQ A; 4UCR A; 3GTQ A; 5C4X G; 1JIH A; 1W93 A; 4BY1 G; 4FU0 A; 3PR4 A; 2W9C A; 1XMQ H; 2FLL A; 5EWG A; 2UVV A; 2OWO A; 1E4E A; 4DR3 H; 1WR2 A; 4JV2 A; 3PO2 G; 1R9T A; 2WE6 A; 4EGJ A; 3IG0 A; 2R7M A; 3EPG A; 1SYX B; 3HKZ A; 4GC6 A; 3T5K A; 1EZ1 A; 1WH2 A; 5KG6 A; 4A3J G; 3IN5 A; 4NLG A; 2JA7 A; 4LF5 H; 3H4B A; 4B3M H; 3F8N A; 4PDB A; 5KFO A; 4U7C A; 2V59 A; 4MV8 A; 3MR6 A; 2E2I A; 3GIK A; 3GTK A; 2R84 A; 2J6S A; 3MWD A; 2R8G A; 5L9X A; 3BA9 A; 1RJQ A; 4B3R H; 1UC8 A; 4DV5 H; 4C2M A; 5DQI A; 5FPR A; 5F9L A; 2VQD A; 2FP4 B; 2VQE H; 2PMZ A; 4AYB A; 4J9S A; 3E5N A; 3K5H A; 2I80 A; 5LL6 b; 1EYZ A; 3LML A; 3N8D A; 5C1O A; 2JA8 G; 1GSA A; 4I7H A; 5EWF A; 3ETH A; 3R23 A; 4DR5 H; 2BQU A; 3Q8Q B; 3JZI A; 4UCO A; 2CW8 A; 5KFD A; 4JI8 H; 2FK2 A; 1T3N A; 2B63 A; 3JRX A; 4EFB A; 2DLN A; 4YR0 A; 1DGS A; 2YYA A; 3GV8 B; 3GIQ A; 4ECY A; 4BY7 G; 2UXB H; 2W9A A; 3RIZ A; 1ZHQ A; 3RB0 A; 2R86 A; 4LF9 H; 4DR6 H; 2ASJ A; 2VUG A; 4JV0 A; 1Y14 B; 3L4K A; 5FLM G; 1ZQ7 A; 2W8L A; 1OWT A; 1MZB A; 3KHR A; 2R7L A; 3G6Y A; 1CQI B; 4RAZ A; 5KG7 A; 1C30 A; 1TWF A; 3FMA A; 1VBG A; 4PWQ A; 3K5I A; 1IOV A; 3KAJ A; 2UVU A; 3BAA A; 3N40 P; 5KT6 A; 3L2P A; 4Q43 A; 3N42 B; 2W6P A; 1AUX A; 5KFE A; 4I4T F; 5JQW A; 2UUB H; 4FBU A; 5KFZ A; 1KJJ A; 4QWB A; 1Y1V A; 2NU6 B; 3WO0 A; 5KFG A; 5KFB A; 4YR2 A; 5A2Q W; 4LFC H; 1KJ9 A; 2JA6 A; 1I3Q A; 2XCP A; 3MWE A; 3PW2 A; 1C3O A; 4IWX A; 4QIW A; 5C1P A; 3BJY A; 4F4Z A; 4DL2 A; 1FJG H; 3MFI A; 2Q2T A; 4JI2 H; 2NU8 B; 2FB9 A; 5KKN B; 2I87 A; 2R8H A; 4J9K A; 3RBE A; 1AUV A; 5C44 G; 4O3P A; 5KT7 A; 5DLF A; 4C5C A; 4O3O A; 3KAL A; 3U9S A; 3GV7 B; 2YW2 A; 2Y0S A; 3QZ8 A; 4DL6 A; 3VPD A; 5C3E G; 4DUY H; 3LP8 A; 4M7E A; 4F4X A; 1S0O A; 2VPS A; 4EFE A; 1VAJ A; 1W96 A; 2GPS A; 3HOX G; 1E4G T; 2Y0S E; 3HOU G; 2BR0 A; 2RGV A; 4DL7 A; 4IR1 A; 2W71 A; 2R7K A; 4UCV A; 1HR0 H; 1BNC A; 2DZD A; 1GLV A; 2WTF A; 5FD5 A; 4DV0 H; 4JI0 H; 4ETS A; 4AQY H; 4ED1 A; 4DR2 H; 4O3S A; 5LYJ F; 2XIG A; 4M9U A; 4ED2 A; 1EUC B; 4UCT A; 4FM9 A; 4A3F G; 2VA3 A; 4YAK B; 3RTX A; 2V4R A; 1N48 A; 2FPP B; 4APM A; 3RB6 A; 4XZ3 B; 4DL4 A; 4CC5 A; 2JEI A; 2R8K A; 1Z2N X; 5KT3 A; 1HNX H; 2RF4 A; 3GTP A; 1V51 A; 4YY3 H; 3M9O B; 4GLX A; 4EBE A; 4R8U A; 4Q45 A; 1KBL A; 3TQ1 A; 5KG1 A; 4RU9 A; 2UVW A; 3FKI A; 4DUZ H; 2WDT A; 4BBR G; 4ECZ A; 3V6K A; 4I55 F; 4DV4 H; 1IBK H; 1VKZ A; 5KFX A; 4ECW A; 2JA6 G; 4EEY A; 2YU9 A; 2R92 A; 3VMM A; 5JVD F; 4BBS G; 1B6R A; 1JKJ B; 2VUM G; 2YZN A; 3G8C A; 2IA6 A; 2JA5 A; 5KX5 F; 2CW7 A; 4YJ2 F; 3RV3 A; 3BQ0 A; 1I7L A; 4DV7 H; 3BQ2 A; 4QWD A; 1ZHS A; 1K1Q A; 2VA2 A; 4IWY A; 1B6S A; 4RNN A; 4F4W A; 2ZDH A; 2RGR A; 1TWG A; 5HBR B; 3V4Z A; 3AYH B; 5FLX W; 4JV5 H; 1Z2O X; 4MV6 A; 3KTM A; 3MR5 A; 2DPI A; 1WCM G; 4TV8 F; 2ZJT A; 3Q8P B; 3GTJ A; 3H0G A; 5I47 A; 2P0A A; 4IHJ F; 3FDS A; 4TV9 F; 5DGB A; 1N56 A; 1PK8 A; 4IRD A; 3U9T A; 3BQ1 A; 4A3B G; 4XX0 B; 4LF7 H; 5KT5 A; 3PW5 A; 4DV2 H; 4B3S H; 3J7A K; 4O2B F; 4ME6 A; 4QW8 A; 4ECR A; 4X65 H; 2AGQ A; 4FS1 A; 1TWA A; 3T5J A; 1GSH A; 5DGA A; 5KFU A; 2R6F A; 4DV6 H; 1S03 G; 2W6O A; 5DG8 A; 2FLP A; 4IAJ A; 2W6Z A; 1M7J A; 3MJF A; 5J2U F; 4QW9 A; 4MA0 A; 3OTO H; 3GQC A; 1KJ8 A; 3GTM A; 1V9P A; 3RB3 A; 3K3P A; 1HNW H; 1V4Y A; 4MV9 A; 4JI1 H; 1I94 H; 1K1S A; 5KFC A; 5BR8 H; 4HNU A; 4MTD A; 3KHG A; 2HVR A; 3MWM A; 5EOY A; 4A2A A; 5KFN A; 5KG2 A; 2ZDQ A; 2E5L H; 5L1L A; 2C2E A; 2R7Z G; 2HHH H; 5KFK A; 1RK5 A; 3WNZ A; 1KJI A; 4A3K G; 4QWC A; 4FS2 A; 2UUA H; 3C0F B; 4ECQ A; 4EBC A; 4XYL B; 1DIK A; 3PW4 A; 2ASL A; 3UFX B; 2AGO A; 1DV2 A; 2JA5 G; 1RYS A; 5KFT A; 2VR1 A; 5IT9 W; 4MTE A; 2OLS A; 4LSX A; 2C2D A; 4JYA H; 1X9N A; 2R93 A; 2W9C B; 4DL5 A; 1RJR A; 3RUP A; 5EZY F; 3PVX A; 1E4E B; 5LXT F; 4J9M A; 5KFH A; 4A3L G; 2JA7 G; 4A3G G; 3PZP A; 2F4V H; 3N44 B; 4RB0 A; 2W6M A; 3JSN A; 2X0S A; 4YQW A; 2VQF H; 1I6U A; 4O3N A; 3CVZ A; 2HVS A; 1TAE A; 4MV1 A; 2R85 A; 5DQH A; 4EEQ A; 3RAX A; 3GTL A; 4HNV A; 2UXD H; 3DF7 A; 3BAB A; 4A3M G; 2BQ3 A; 3RV4 A; 3K3V A; 3H4D A; 1L2Z A; 5BPH A; 4Q44 A; 1SFO A; 2O03 A; 4ED6 A; 1N34 H; 1SEI A; 5KT4 A; 3HOZ G; 4RUC A; 4MV4 A; 3M9M B; 4I50 F; 4JV1 A; 4J9Q A; 4JI5 H; 4EBD A; 2YZM A; 4RNO A; 2V58 A; 4LMY A; 2ALZ A; 4BWS C; 3T1H H; 2WYO A; 3J80 W; 4WD3 A; 4F50 A; 4ED8 A; 3KAK A; 4IRC A; 4XYM B; 3VPC A; 2R8I A; 1SCU B; 2JEG A; 5KFM A; 1Y1W A; 5FJ8 G; 1XDN A; 2B63 G; 1CQJ B; 1KJQ A; 1S0M A; 4ECX A; 4NXN H; 2HVQ A; 5IP7 G; 3H20 A; 2JEJ A; 2FK1 A; 3Q8R B; 4MV7 A; 4ZHQ F; 3RJ0 A; 5D1O B; 3OUZ A; 5D8D A; 1GO3 E; 5IYZ F; 3JSL A; 3R5X A; 5KG0 A; 5BPF A; 4DL3 A; 4LFA H; 3M9N B; 3EYY A; 1CS0 A; 3BG5 A; #chains in the Genus database with same CATH homology 3HXL A; 4B3T H; 2MCT A; 4DV7 H; 3KXY T; 4LF8 H; 5LL6 b; 3LML A; 3JAM W; 4X64 H; 1ZHS A; 1FKA H; 4DR5 H; 4I7H A; 4UCO A; 4YHH H; 2CW8 A; 2RGR A; 4JI8 H; 1P8L A; 1BJT A; 5FLX W; 1E4F T; 3N6X A; 4EFB A; 4JI4 H; 1Z2O X; 1DGS A; 4JV5 H; 3L4J A; 3T1Y H; 2UXB H; 1M0W A; 3RGX A; 3RIZ A; 2VOB A; 1XMO H; 4GKJ H; 1ZHQ A; 2HGS A; 2ZJT A; 4J0M A; 1AN7 A; 4LF4 H; 4LF9 H; 2VUG A; 1FVI A; 4DR6 H; 1HNZ H; 1N32 H; 3L4K A; 4JI3 H; 4LSA A; 1MZB A; 4LF7 H; 3UQ8 A; 4B3S H; 4DV2 H; 3PN1 A; 3J7A K; 4GKK H; 3RGZ A; 4NXM H; 4X65 H; 4RAZ A; 4DR4 H; 4RB1 A; 4X62 H; 2YCH A; 4JI6 H; 3FMA A; 4DV6 H; 1B04 A; 1IBM H; 3KAJ A; 1S03 G; 4RB3 C; 3N41 B; 4KHP H; 3BAA A; 3N40 P; 4LH6 A; 4IAJ A; 5IWA H; 4RAY A; 4LH7 A; 4DR7 H; 3OTO H; 3L2P A; 3N42 B; 1V9P A; 4R7R A; 5FPO A; 1HNW H; 4MV9 A; 4JI1 H; 1I94 H; 2UUB H; 5BR8 H; 4MTD A; 4RB2 C; 2HVR A; 3MWM A; 1BGW A; 5EOY A; 4A2A A; 2E5L H; 5A2Q W; 4Q0Y A; 1Z2P X; 1TA8 A; 4LFC H; 2HHH H; 4LFA H; 2UUC H; 2UUA H; 3C0F B; 1FJG H; 4LF6 H; 1IBL H; 4K0K H; 2Q2T A; 4JI2 H; 4LFB H; 5LMU H; 5IT9 W; 4MTE A; 4UCU A; 4DR1 H; 3N43 B; 4RZQ A; 4LSX A; 4JYA H; 1X9N A; 1M0T A; 3KAL A; 2Q2U A; 1VS0 A; 3M4I A; 3RF2 A; 1N36 H; 1XNQ H; 2F4V H; 3N44 B; 4DV3 H; 4DUY H; 4RB0 A; 4M7E A; 3JSN A; 1A0I A; 2VQF H; 2VPS A; 4EFE A; 1I6U A; 3CVZ A; 1E4G T; 2HVS A; 1TAE A; 2KSW A; 2UU9 H; 4EEQ A; 2RGV A; 1XNR H; 5FD6 A; 2UXD H; 3DF7 A; 4UCV A; 3BAB A; 1L2Z A; 4UCR A; 3K3V A; 1HR0 H; 2O03 A; 1XMQ H; 2OWO A; 4DV0 H; 5FD5 A; 3BA8 A; 4JI0 H; 4ETS A; 4AQY H; 4DR3 H; 1N34 H; 1SEI A; 4DR2 H; 1S68 A; 2WE6 A; 2XIG A; 5LMN H; 3IG0 A; 4OX9 H; 4A2B A; 4UCT A; 1SYX B; 4FM9 A; 4JI5 H; 1GYF A; 3RTX A; 1WH2 A; 4APM A; 4LMY A; 1J5E H; 4BWS C; 4CC5 A; 3T1H H; 2WYO A; 3J80 W; 3F8N A; 4B3M H; 1Z2N X; 3KAK A; 4LF5 H; 4PDB A; 1HNX H; 4DV1 H; 2FE3 A; 1O75 A; 4JI7 H; 5D1O A; 4X66 H; 4YY3 H; 2ZM6 H; 4UFZ A; 4GLX A; 2UXC H; 1N33 H; 4CC6 A; 1XDN A; 4DUZ H; 2WDT A; 3BA9 A; 4NXN H; 4B3R H; 2HVQ A; 3H20 A; 4DV5 H; 4DV4 H; 1IBK H; 4MV7 A; 3RJ0 A; 5FPR A; 5D1O B; 3J81 W; 2W57 A; 2VQE H; 3JSL A; 5D1P A; 2CW7 A; 3EYY A; 4UCS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
