The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
206
|
structure length |
185
|
Chain Sequence |
FTDPRKSELYVVEGDMFQAILPLRGKDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| source organism |
Mycobacterium tuberculosis
|
| molecule keywords |
DNA gyrase subunit B
|
| total genus |
51
|
| structure length |
185
|
| sequence length |
206
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
5.99.1.3: Transferred entry: 5.6.2.3. |
| pdb deposition date | 2008-03-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00986 | DNA_gyraseB_C | DNA gyrase B subunit, carboxyl terminus |
| A | PF01751 | Toprim | Toprim domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | Dna Ligase; domain 1 |
#chains in the Genus database with same CATH superfamily 3M4I A; 3IG0 A; 2ZJT A; #chains in the Genus database with same CATH topology 5BMV F; 4EFB A; 3GV5 B; 2RGV A; 2JEF A; 3E5N A; 1Y1V A; 3T1Y H; 4ETS A; 2NU6 B; 2FK3 A; 4QIW E; 4CC5 A; 1DIK A; 4DV0 H; 2VUM G; 2C35 B; 2UU9 H; 1V9P A; 3KHL A; 2GLT A; 4O4I F; 2VQF H; 3PW7 A; 4JI7 H; 4Q8F A; 4QWE A; 1Z2O X; 1GSO A; 4LSX A; 4MA0 A; 4TV9 F; 1S68 A; 1DGS A; 1KC7 A; 3PR4 A; 4EBE A; 4JI0 H; 5KX5 F; 3BAA A; 1RYR A; 3GTJ A; 1B04 A; 1BJT A; 3H0G A; 1JKJ B; 4HNT A; 4PWQ A; 3CVZ A; 5LL6 b; 4U7C A; 1V51 A; 4QW9 A; 4R8U B; 4O3P A; 2I80 A; 3KTM A; 2ZM6 H; 1VKZ A; 4F4W A; 3ETH A; 3RAX A; 4IR1 A; 1ULZ A; 1Z2P X; 2R7L A; 1I50 A; 3R5H A; 4YAK B; 4A3J G; 1WH2 A; 4JV5 H; 4HNV A; 5KFK A; 1E4E A; 4ZI7 F; 4LH7 A; 2HGS A; 3M9N B; 1JX4 A; 2DWC A; 1CE8 A; 5KFQ A; 2CQY A; 2R7N A; 3EPG A; 2WYO A; 2ALZ A; 4WD3 A; 3M9O B; 5KG3 A; 5KFH A; 4EYH B; 4C5C A; 4AYB E; 4EEQ A; 3N43 B; 3RV4 A; 2W6P A; 4ZOL F; 3K3V A; 2C22 A; 4EGQ A; 4DV4 H; 3PW2 A; 3HOV G; 5KFS A; 2XCP A; 1GLV A; 3JRX A; 2R86 A; 3R5F A; 3FMA A; 4MA5 A; 3MFI A; 3PW0 A; 2J6S A; 4GKK H; 1M6V A; 2R6F A; 1IOV A; 4AQY H; 1CQJ B; 3GIJ A; 2NU9 B; 3GIM A; 4JI5 H; 5KFM A; 4O3O A; 4XZ3 B; 5JVD F; 4RUA A; 2VOB A; 4ED7 A; 1XNR H; 3T5J A; 4EEY A; 3GLK A; 3JZI A; 3H4D A; 2QYZ A; 1A0I A; 4EBC A; 4HR7 A; 3N6X A; 2YS7 A; 4JI1 H; 2R8K A; 2NU7 B; 5C5J A; 2JA6 G; 1BXR A; 5FLX W; 4O3S A; 3MJF A; 3QZ7 A; 5EZY F; 2R84 A; 4LSA A; 3T1H H; 2C2E A; 1N48 A; 3L2P A; 2YZN A; 4DV1 H; 5KG2 A; 3RF2 A; 5CAE B; 3N8D A; 3GII A; 3HOW G; 2UXB H; 1HNW H; 1JIH A; 3GIQ A; 1VAJ A; 2FK2 A; 2P0A A; 1JLL B; 3GIL A; 3I12 A; 4A3G G; 4DL2 A; 4GC7 A; 5L1L A; 2FPG B; 4FS2 A; 4YY3 H; 1S0N A; 4FM9 A; 1S97 A; 2R93 A; 4IRK A; 4O2B F; 4EGJ A; 5C3E G; 4F4X A; 2YW2 A; 3T5K A; 2UVW A; 2OWO A; 4LF7 H; 4A3E G; 3KHR A; 2C00 A; 3I4M G; 2DZD A; 3N42 B; 2W70 A; 4RUC A; 2JEG A; 1Y1W A; 1MZB A; 3PN1 A; 1BNC A; 3HOZ G; 3GTM A; 1WCM A; 2XIG A; 3PW4 A; 3HKZ E; 4DR6 H; 3ORQ A; 2BQR A; 4DL6 A; 1AUX A; 1M7J A; 3GQC A; 5CA0 F; 3KXY T; 2IBK A; 4A3L G; 4B3T H; 2FLL A; 4X65 H; 4J0M A; 3GIK A; 1DV1 A; 5L9X A; 2MCT A; 5BPH A; 2C2R A; 1IBL H; 3M9M B; 1AN7 A; 3NGD A; 1KJQ A; 1SCU B; 1UC8 A; 5DGB A; 3UQ8 A; 4IZO A; 3RBD A; 2VQD A; 1VS0 A; 3OUU A; 4ED8 A; 1AUV A; 5I47 A; 2NU8 B; 4YR0 A; 4C5A A; 5KFW A; 5BR8 H; 2QK4 A; 4O4H F; 4I55 F; 4IR9 A; 2HJW A; 4JI3 H; 2W7P A; 4QJF A; 2Q2U A; 5KFT A; 2UXC H; 2JA7 A; 1I6U A; 2UUB H; 4LF9 H; 2R82 A; 1TWC A; 2OH2 A; 2JEI A; 2VPQ A; 3DF7 A; 1PX2 A; 5KFG A; 5FPR A; 4FS1 A; 4ECY A; 3T5H A; 4MV8 A; 4BWS C; 4LFC H; 5IYZ F; 2FE3 A; 2VR1 A; 4Q8E A; 1GO3 E; 2W71 A; 5KG5 A; 1C3O A; 1M0W A; 4F4Y A; 3RB6 A; 3TQ1 A; 2B63 G; 3BQ2 A; 1RJQ A; 5KFB A; 5KFN A; 4A3F G; 3GTQ A; 2R7M A; 1E4E B; 1V4Y A; 5D8D A; 4C2M A; 5CB4 F; 4U6P A; 3MR2 A; 2V9W A; 3FDS A; 4LH6 A; 3GTL A; 1M0T A; 5L1K A; 4JV1 A; 3IG0 A; 4CC6 A; 3TIG A; 3T5L A; 3GTP A; 5KT5 A; 2J9G A; 4UCS A; 1T3N A; 2VUM A; 4YP3 A; 5F9L A; 4TUY F; 1HNX H; 1O75 A; 3BA8 A; 1KEE A; 3ETJ A; 3OTO H; 3N41 B; 2JA8 G; 4J9K A; 2FLP A; 5HV6 A; 2WAQ A; 3GID A; 3OUZ A; 2RGR A; 4OX9 H; 5KT6 A; 2WB1 A; 3RGZ A; 5C44 G; 3V6H A; 2IMW P; 4ECV A; 3I4N G; 5IP7 G; 2NUA B; 4E4T A; 3G8C A; 5EWG A; 4QWD A; 2UUC H; 1TWH A; 4BXX G; 1KJJ A; 4APM A; 4DUY H; 2R8G A; 4JV0 A; 4MV9 A; 2VA3 A; 4DV2 H; 1GSA A; 3PW5 A; 4X66 H; 2XGP A; 5EDW A; 1FKA H; 4Y8V B; 5KFR A; 2KSW A; 5KG7 A; 5LA6 F; 4UCT A; 1VBG A; 4LF4 H; 3V6J A; 3FKI A; 2PBZ A; 3Q8P B; 2FK1 A; 2DLN A; 4YBZ B; 5KG4 A; 4B3R H; 2UVU A; 4DL3 A; 3MWD A; 1ZHQ A; 4C5B A; 3BJY A; 1B33 N; 4O4L F; 4J9O A; 2W9B A; 4BY7 G; 1HR0 H; 1JDB B; 4FBT A; 2ZDH A; 1S10 A; 4F4Z A; 3QFF A; 1TWG A; 5FJ8 G; 1N56 A; 2J6T A; 4LFA H; 4JUZ A; 4HYK A; 2R7Z G; 1CQI B; 5KFA A; 3BQ0 A; 1SYX B; 4UCO A; 4RB2 C; 5DQH A; 3RIZ A; 3HOY G; 1TWA A; 2R87 A; 1RJR A; 2W9A A; 2R8H A; 3RAQ A; 1S9F A; 4LF5 H; 4LMY A; 3MR3 A; 1FVI A; 5KFX A; 4XYM B; 4JI6 H; 2Y0S A; 2I8C A; 1N34 H; 2CKZ B; 4Q45 A; 1PK8 A; 4EYI B; 2Q2T A; 5F9N A; 1I3Q A; 4J9L A; 4X64 H; 4O3Q A; 2O03 A; 3PR5 B; 1R9T A; 2E5L H; 3GTG A; 3JSN A; 5KFI A; 4WBN F; 3GTO A; 3N40 P; 4IWX A; 4RNO A; 2PN1 A; 4MV4 A; 4RAY A; 3J81 W; 2W6Z A; 3M4I A; 2AU0 A; 4LF8 H; 1EHI A; 5D1O A; 2CZG A; 4R7R A; 4XYL B; 5T14 A; 3U9T A; 2YZG A; 4YQW A; 1E4G T; 4A2A A; 3BQ1 A; 2J6U A; 3LWB A; 4A3I G; 3H4B A; 1W93 A; 4BY1 G; 5IWA H; 3GV7 B; 4YJ2 F; 2RDJ A; 3LP8 A; 4J9M A; 3PO2 G; 2GPW A; 3GV8 B; 4ME6 A; 2VUG A; 4I50 F; 4KHP H; 3LML A; 4MTE A; 3J7A K; 4F50 A; 2M05 A; 1ZHS A; 3RUP A; 5KFV A; 2W9C B; 1IBM H; 2JA5 A; 4ZQI A; 3HXL A; 4RB3 C; 1EUD B; 2PVP A; 2FB9 A; 2DPI A; 4FU0 A; 3UFX B; 2V58 A; 3N44 B; 3G6Y A; 5DQG A; 2W6N A; 1W96 A; 4QWB A; 4J9P A; 3MWM A; 2FPP B; 2NVY A; 4ED6 A; 4RZQ A; 4M7E A; 3U9S A; 5IT9 W; 3VMM A; 2ATL A; 3G6V A; 2VQE H; 4DV5 H; 4DR7 H; 4BBR G; 5KFZ A; 2R8I A; 5FLM G; 3KHH A; 2RF4 A; 2XD4 A; 3WO0 A; 3JSL A; 3RJ0 A; 5L1J A; 1RJP A; 1E4F T; 2FKL A; 5J2T F; 5LMN H; 1RK5 A; 1EZ1 A; 2HHH H; 4O3R A; 2OLS A; 2R85 A; 5EWF A; 2E2H A; 1N36 H; 1T94 A; 1N33 H; 3OHA A; 2XGQ A; 2R7K A; 4M9U A; 4RAZ A; 2W9C A; 4DL7 A; 5J2U F; 4JI8 H; 1C30 A; 4RNM A; 3V4Z A; 4J9Q A; 3H3V H; 4YR3 A; 2W8L A; 4ECW A; 1TWF A; 3KAK A; 2AQ4 A; 3KHG A; 1KJ9 A; 3RV3 A; 5LP6 F; 4K0K H; 2V4R A; 4I7H A; 4ECR A; 2R92 G; 5L1I A; 1S0O A; 2B63 A; 3OSN A; 3HB9 A; 5C1P A; 5JQW A; 4JV2 A; 1SFO A; 2UVR A; 2AGP A; 1K1Q A; 2IP4 A; 2WDT A; 4IRC A; 4A3B G; 4EFE A; 2BQU A; 3KAJ A; 3Q8R B; 2ASL A; 4MAM A; 4QIW A; 4DV7 H; 5KT7 A; 3J80 W; 4DL5 A; 4A3M G; 1KJ8 A; 1A9X A; 1GSH A; 3RB3 A; 2NVX A; 5GON F; 2W6M A; 4ECX A; 3RTX A; 4RZR A; 4ECS A; 3MR6 A; 3H40 A; 2BR0 A; 2ASJ A; 3R23 A; 3MFH A; 3OSP A; 2W9B B; 3SI8 A; 3RB0 A; 1FJG H; 4L1K A; 1Y1V G; 4DR5 H; 4DR4 H; 3C0F B; 2YYA A; 1XMO H; 3KAL A; 3BAB A; 4IRD A; 2IA6 A; 5JH7 F; 5FD5 A; 5KFL A; 1KJI A; 1T36 A; 4ECZ A; 4EG0 A; 1B6R A; 4ED2 A; 1B6S A; 4YB8 B; 4GC6 A; 4JYA H; 5KFJ A; 5KKN B; 5KFP A; 3HOX G; 2JEJ A; 5KFU A; 3H0G G; 3GIP A; 3TIN A; 5D1P A; 4Q44 A; 4YR2 A; 4IAJ A; 4DV3 H; 3L4J A; 2WAQ E; 2ZJT A; 3R5X A; 4DUZ H; 5EWE A; 1RK6 A; 3VPB A; 2WB1 E; 4TQR A; 2VA2 A; 1Z2N X; 2R8J A; 1TA8 A; 2W6O A; 3JAM W; 2E2I A; 4AYB A; 4O2A F; 5KG6 A; 5KT3 A; 1TAE A; 2XCA A; 3BA9 A; 4FBU A; 1WSC A; 3PO3 G; 1JXL A; 2YL2 A; 4DLK A; 1IBK H; 4G3I A; 2CW7 A; 3AYH B; 3Q8S B; 3WO1 A; 2AGQ A; 2FJZ A; 4DV6 H; 2W57 A; 3BG5 A; 5DG9 A; 5D1O B; 2DPJ A; 4QWC A; 4EBD A; 2FPI B; 4IWY A; 1VBH A; 2FMA A; 3F8N A; 1UC9 A; 2W6Q A; 4YHH H; 1I7L A; 3FKI G; 1X9N A; 2HVR A; 2UUA H; 4A93 G; 2R7Z A; 5DGA A; 2YU9 A; 4NXN H; 1EUC B; 3ORR A; 4MV6 A; 5C4X G; 4YJ3 F; 3G6X A; 3RBE A; 2ZDG A; 3MWE A; 4ECT A; 1XNQ H; 5CA1 F; 3RGX A; 1J5E H; 1WR2 A; 2GPS A; 5JVL A; 4ECU A; 4UCU A; 2JA6 A; 3L4K A; 3K5H A; 3CQZ A; 4YAJ B; 4ED1 A; 2WE6 A; 3MR5 A; 2RDI A; 1P8L A; 1IOW A; 5EOY A; 4R8U A; 5IYB G; 2ASD A; 4A2B A; 4TQS A; 1K1S A; 4Q0Y A; 1DV2 A; 1S03 G; 4Q43 A; 1RYS A; 4B3S H; 1KBL A; 1HNZ H; 4XX0 B; 3V4S A; 4JI4 H; 3VPC A; 2V5A A; 2Y0S E; 4ED0 A; 4ED3 A; 5IYD G; 1EYZ A; 4ECQ A; 3H20 A; 2VPS A; 5FD6 A; 1L2Z A; 3HBL A; 1OWT A; 5KT4 A; 1GGO A; 4MV7 A; 3PVX A; 1ZET A; 1N32 H; 1Y14 B; 5DG8 A; 2CW8 A; 3HKZ A; 4J9S A; 2PMZ A; 2YS6 A; 4RB0 A; 5LOV F; 3PZP A; 5H80 A; 3SE7 A; 5KFE A; 1S0M A; 2R93 G; 5A2Q W; 2W7O A; 4GKJ H; 4HQ6 A; 5C8Y F; 3WNZ A; 5BPF A; 4DR2 H; 2AGO A; 4UFZ A; 3Q8Q B; 3HOU G; 2HVQ A; 3GTK A; 2UXD H; 4LF6 H; 1Y1W G; 3Q1K A; 4MV1 A; 5DLG A; 1WCM G; 4ZHQ F; 3RB4 A; 5DLF A; 5KFC A; 4NLG A; 4TV8 F; 4BBS G; 5KFF A; 2PMZ E; 5HBR B; 4I4T F; 5KT2 A; 4GLX A; 5LYJ F; 3K5I A; 3JRW A; 5KFD A; 2C2D A; 1K83 A; 4MTD A; 2JA5 G; 1UNN C; 5C1O A; 4A3D G; 4DR1 H; 4UCR A; 3Q2O A; 2BQ3 A; 2YZM A; 3K3P A; 3RFC A; 1I7N A; 1GYF A; 2FP4 B; 2SCU B; 1XDN A; 5FPO A; 3TQT A; 4QWA A; 3EPI A; 4J9N A; 1BGW A; 3TII A; 2HVS A; 4RU9 A; 2ZDQ A; 5KG1 A; 3OHB A; 5DG7 A; 4B3M H; 4A3C G; 2YRW A; 2W8K A; 5KFY A; 1CS0 A; 5IP9 G; 3V6K A; 4J9R A; 2FLN A; 5LXT F; 4PDB A; 5KFO A; 1I94 H; 1JDE A; 2I87 A; 4DL4 A; 5JUM A; 2XC9 A; 2JA7 G; 3VPD A; 5DQI A; 4A3K G; 2X0S A; 2R92 A; 5IYC G; 2UVV A; 2YCH A; 4RB1 A; 5LMU H; 4DR3 H; 1SEI A; 4UCV A; 2DIK A; 2C28 A; 4MV3 A; 5K2M A; 3QZ8 A; 4NXM H; 4QW8 A; 2YRX A; 4JI2 H; 4LFB H; 2WTF A; 4IHJ F; 4RNN A; 5KG0 A; 4HNU A; 2V4Q A; 2V59 A; 3IN5 A; 2F4V H; 1XMQ H; 2XCL A; 3EYY A; 4O3N A; 1ZQ7 A; 4X62 H; #chains in the Genus database with same CATH homology 3UQ8 A; 3N40 P; 4EFB A; 4DV6 H; 2W57 A; 4LF8 H; 4RAY A; 5D1O B; 3J81 W; 1VS0 A; 2RGV A; 3M4I A; 5D1O A; 3F8N A; 4R7R A; 4ETS A; 3T1Y H; 4CC5 A; 4YHH H; 4DV0 H; 1E4G T; 4A2A A; 5BR8 H; 1X9N A; 2HVR A; 2UU9 H; 2UUA H; 1V9P A; 4NXN H; 2VQF H; 4JI7 H; 4JI3 H; 1Z2O X; 5IWA H; 2Q2U A; 4LSX A; 2UXC H; 1I6U A; 2UUB H; 1S68 A; 1DGS A; 3RGX A; 4LF9 H; 1XNQ H; 1J5E H; 4JI0 H; 2VUG A; 4KHP H; 3BAA A; 3DF7 A; 3LML A; 4UCU A; 1B04 A; 5FPR A; 4MTE A; 3J7A K; 1BJT A; 1ZHS A; 4BWS C; 3L4K A; 3CVZ A; 1IBM H; 5LL6 b; 4LFC H; 2WE6 A; 2FE3 A; 3HXL A; 1P8L A; 4RB3 C; 2ZM6 H; 5EOY A; 1M0W A; 4A2B A; 1Z2P X; 3N44 B; 4Q0Y A; 1S03 G; 1WH2 A; 4B3S H; 3MWM A; 4JV5 H; 1HNZ H; 4RZQ A; 4JI4 H; 4LH6 A; 4LH7 A; 1M0T A; 2HGS A; 4M7E A; 5IT9 W; 3IG0 A; 2VQE H; 4DV5 H; 2WYO A; 2VPS A; 3H20 A; 4CC6 A; 5FD6 A; 4DR7 H; 1L2Z A; 4UCS A; 3JSL A; 4MV7 A; 3RJ0 A; 1HNX H; 1E4F T; 4EEQ A; 5LMN H; 1O75 A; 3BA8 A; 3N43 B; 1N32 H; 3K3V A; 2HHH H; 2CW8 A; 3OTO H; 4DV4 H; 3N41 B; 4RB0 A; 1N36 H; 1N33 H; 3FMA A; 5A2Q W; 4GKJ H; 4GKK H; 4DR2 H; 4RAZ A; 2RGR A; 4OX9 H; 4UFZ A; 4JI8 H; 2HVQ A; 4AQY H; 3RGZ A; 2UXD H; 4LF6 H; 3KAK A; 4JI5 H; 4K0K H; 2UUC H; 4I7H A; 2VOB A; 1XNR H; 4APM A; 4DUY H; 1A0I A; 2WDT A; 3N6X A; 4MV9 A; 4EFE A; 4JI1 H; 4DV2 H; 4X66 H; 4GLX A; 3KAJ A; 5FLX W; 1FKA H; 2KSW A; 4DV7 H; 4UCT A; 4LSA A; 4MTD A; 3T1H H; 4LF4 H; 3L2P A; 3J80 W; 4DV1 H; 3RF2 A; 4DR1 H; 4UCR A; 4B3R H; 2UXB H; 3RTX A; 1HNW H; 1GYF A; 5FPO A; 1XDN A; 1ZHQ A; 1BGW A; 2HVS A; 1FJG H; 4YY3 H; 4B3M H; 4FM9 A; 1HR0 H; 4DR5 H; 2OWO A; 4DR4 H; 3C0F B; 1XMO H; 4LF7 H; 4LFA H; 3KAL A; 3BAB A; 4PDB A; 1SYX B; 4UCO A; 4RB2 C; 3N42 B; 5FD5 A; 3RIZ A; 1I94 H; 1MZB A; 3PN1 A; 2XIG A; 4LF5 H; 4JYA H; 4LMY A; 4DR6 H; 1FVI A; 2YCH A; 4RB1 A; 5LMU H; 4DR3 H; 5D1P A; 1SEI A; 4UCV A; 4IAJ A; 4DV3 H; 3L4J A; 4JI6 H; 3KXY T; 2ZJT A; 1N34 H; 4B3T H; 4DUZ H; 4X65 H; 4J0M A; 2Q2T A; 1Z2N X; 2MCT A; 1TA8 A; 4JI2 H; 1IBL H; 3JAM W; 4NXM H; 4LFB H; 1TAE A; 3BA9 A; 1AN7 A; 4X64 H; 2F4V H; 2O03 A; 1XMQ H; 2E5L H; 1IBK H; 3EYY A; 3JSN A; 2CW7 A; 4X62 H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
