The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
204
|
structure length |
201
|
Chain Sequence |
MLTETEGRAAVKLARKTIEIFLSKGKSPRSGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKFLEHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-Ray structure of the hypothetical protein Q8PZK8 from Methanosarcina mazei at the resolution 2.1A. Northeast Structural Genomics Consortium target MaR9.
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Methanosarcina mazei
|
| molecule keywords |
Hypothetical protein MM0484
|
| total genus |
52
|
| structure length |
201
|
| sequence length |
204
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2005-05-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01871 | AMMECR1 | AMMECR1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Glycoprotein, Type 4 Pilin | Hypothetical protein ph0010; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | Hypothetical protein ph0010; domain 2 |
#chains in the Genus database with same CATH superfamily 1ZQ7 A; 1WSC A; 1VAJ A; #chains in the Genus database with same CATH topology 3R5F A; 1E4F T; 2Q2T A; 3LP8 A; 1GGO A; 1KJI A; 4AYB A; 4LFB H; 1K83 A; 4GKJ H; 5F9N A; 2XCP A; 4A3G G; 3JSL A; 3ETH A; 5IYD G; 5JQW A; 4R7R A; 1VS0 A; 2IMW P; 4LF4 H; 2PVP A; 5IYB G; 3JRX A; 1CS0 A; 5FD6 A; 4DV4 H; 3RB6 A; 2UU9 H; 2FK1 A; 3OSP A; 3T5J A; 3MWD A; 3F8N A; 4MV8 A; 5DG8 A; 3EPI A; 2WDT A; 4ZI7 F; 2XD4 A; 5KT4 A; 4DR7 H; 2W70 A; 2VOB A; 2FPP B; 4LH7 A; 4EFE A; 4DR5 H; 4JI7 H; 3H3V H; 2R7K A; 4MV4 A; 4BWS C; 1S0O A; 1RJR A; 2WE6 A; 5IYZ F; 3VPD A; 4APM A; 5KFW A; 4YR0 A; 4EEY A; 3RAQ A; 1N36 H; 1N48 A; 2DZD A; 2FK2 A; 1DV1 A; 2C2E A; 2FLP A; 2W9C A; 4JUZ A; 2XC9 A; 2W6Q A; 5FPO A; 3SOJ A; 2I87 A; 3K3P A; 4J9P A; 3H0G A; 2R6F A; 4E4T A; 4B3S H; 5JUM A; 4DR3 H; 5IP7 G; 2WYO A; 5KT2 A; 4X65 H; 4JV1 A; 3CVZ A; 1WCM G; 5LP6 F; 5DGA A; 1IOW A; 4ECT A; 3BG5 A; 5J2U F; 1B6S A; 1CE8 A; 4QWE A; 2FB9 A; 1KJQ A; 1M0W A; 1I3Q A; 3KHL A; 4GC7 A; 5IWA H; 3T1Y H; 3SI8 A; 4A3F G; 2FKL A; 4FU0 A; 4O3S A; 2W6M A; 2JA7 A; 1N34 H; 3K3V A; 4HNT A; 4ED3 A; 2FE3 A; 1E4E A; 3QFF A; 4YJ2 F; 3GN9 A; 5KFV A; 3GTP A; 1I6U A; 4DL5 A; 4UCR A; 5EWG A; 5LOV F; 4YR3 A; 4J9S A; 4ECV A; 1C30 A; 1X6Q A; 3M9N B; 2J6T A; 2R84 A; 4WBN F; 4RUA A; 3J7A K; 4RNO A; 2V59 A; 2XCA A; 4A3E G; 5K2M A; 2C2R A; 4LFA H; 4A3I G; 1JDE A; 3V4S A; 3OHA A; 3GV8 B; 5KFG A; 1J5E H; 2W7P A; 2V58 A; 2UUA H; 4J9R A; 3MWE A; 2J9G A; 2JA5 A; 1C3O A; 2RDJ A; 2PN1 A; 5EOY A; 4O4L F; 4MV7 A; 5EZY F; 5GON F; 4A2A A; 1KEE A; 4ED0 A; 1CQI B; 1EZ1 A; 1Y1V A; 2AQ4 A; 4BY7 G; 3IG0 A; 1IBK H; 4KHP H; 1KJ9 A; 4QWB A; 1DZO A; 5KFE A; 2R82 A; 1TWH A; 3JSN A; 4UCV A; 4ED8 A; 1Y1W G; 4LMY A; 5EDW A; 2UUC H; 4YR2 A; 5KFL A; 1W93 A; 3PW0 A; 3AYH B; 3MFH A; 3IN5 A; 2W9C B; 2FPI B; 2W71 A; 5T14 A; 4J9Q A; 2AGO A; 4LW9 A; 1S97 A; 4A3C G; 3CQZ A; 2W8L A; 3VPB A; 4MV3 A; 2R87 A; 1S68 A; 5DQI A; 2W8K A; 1BXR A; 2PBZ A; 2QYZ A; 4QIW E; 4TUY F; 4RB2 C; 4ECU A; 2R93 A; 4RNN A; 2DWC A; 2UVU A; 3HOU G; 3N43 B; 4JYA H; 2KEP A; 3SOK A; 4I55 F; 3RV3 A; 3GIK A; 4MV9 A; 5BMV F; 4AYB E; 3GTO A; 3MR2 A; 5FLX W; 3HKZ A; 1X6Y A; 4O3N A; 4YQW A; 3LML A; 3TQT A; 4RZQ A; 2R7M A; 4EG0 A; 5EWE A; 4JI0 H; 3GII A; 1E4E B; 2R8G A; 2NU6 B; 2R85 A; 3GIQ A; 1BNC A; 4C2M A; 2YU9 A; 5FD5 A; 1SFO A; 5KFD A; 2PIL A; 1SEI A; 2UVR A; 4PDB A; 1HPW A; 4UCU A; 4JV5 H; 3HXL A; 4BBR G; 4NLG A; 3PR4 A; 3DF7 A; 1GSA A; 2VQF H; 4FS1 A; 1N33 H; 4ECW A; 1EUC B; 1S0M A; 4C5A A; 3RIZ A; 5KT6 A; 3PW4 A; 2NU7 B; 2JEJ A; 4K0K H; 1O75 A; 1GSH A; 4RNM A; 5DGB A; 4A93 G; 2VR1 A; 4ZOL F; 4HNV A; 1FVI A; 2YW2 A; 5KG4 A; 1B6R A; 1XNR H; 2YZM A; 4IR9 A; 3Q1K A; 5LL6 b; 5CB4 F; 4QWA A; 5DG7 A; 2ZM6 H; 2M05 A; 4LFC H; 1X6X X; 2ZDG A; 3H0G G; 4RU9 A; 2AU0 A; 2DPJ A; 4DL4 A; 2ASL A; 2R7L A; 4Q45 A; 1K1Q A; 3HOV G; 3GTG A; 3GIM A; 1JXL A; 3GV5 B; 1X6R A; 4TQR A; 3EPG A; 4A3M G; 2E2H A; 3GTQ A; 2V9W A; 1TWG A; 2OLS A; 4IR1 A; 1XMQ H; 5LMU H; 3JZI A; 2XCL A; 2UXC H; 4ED1 A; 4JV2 A; 3J81 W; 2JA6 A; 2JA7 G; 2CZG A; 5F9L A; 1Z2O X; 3HOZ G; 2BQR A; 1AN7 A; 2I80 A; 3RV4 A; 1RK5 A; 3TIG A; 4O2B F; 4ZQI A; 4Q0Y A; 3RBD A; 4JI4 H; 4LF6 H; 4NXM H; 1X9N A; 4I4T F; 2OWO A; 2DLN A; 3GLK A; 1WR2 A; 3C0F B; 5KFM A; 3V6H A; 2VQD A; 1KJJ A; 5KFX A; 5BPH A; 3Q8Q B; 2W6Z A; 3MR3 A; 3PW7 A; 1ZQ7 A; 3PW5 A; 4M9U A; 3VPC A; 3GTK A; 4RB1 A; 4TV9 F; 3KHR A; 3JZZ A; 4UCS A; 4A3J G; 5KFP A; 3PR5 B; 1S03 G; 1HNX H; 1E4G T; 1KC7 A; 4EYH B; 1V4Y A; 4IWX A; 4M7E A; 2YL2 A; 4RB3 C; 2DPI A; 4A3L G; 3GIL A; 2JA5 G; 4YJ3 F; 1GO3 E; 1V51 A; 2PMZ E; 1PX2 A; 2W6N A; 2IBK A; 4A3B G; 3KHG A; 4LSA A; 1Y1V G; 1TA8 A; 3GTL A; 2VPS A; 1IBL H; 4EBE A; 3T1H H; 3I4N G; 1FKA H; 2SCU B; 1JLL B; 3N44 B; 2WAQ A; 5FPR A; 4DR4 H; 5CA1 F; 3RBE A; 2ASJ A; 2FJZ A; 2I8C A; 3RGX A; 1MZB A; 2C2D A; 5D8D A; 3H4B A; 4UCO A; 1T3N A; 2Y0S A; 3H40 A; 4O3R A; 1QVE A; 2CW7 A; 4YY3 H; 4LF9 H; 1Z2N X; 4I50 F; 4HNU A; 4QW9 A; 2R8J A; 3MJF A; 2CW8 A; 4FBU A; 1I7L A; 4QWD A; 2R93 G; 3BQ0 A; 5KFI A; 4NXN H; 5JH7 F; 3BQ1 A; 1SCU B; 2B63 A; 4DUY H; 4LF8 H; 2VA2 A; 4C5C A; 1OWT A; 4DL2 A; 4XX0 B; 2GPS A; 5KG3 A; 1K1S A; 1V9P A; 3N42 B; 4YHH H; 1M6V A; 3KXY T; 2NUA B; 4IAJ A; 4FS2 A; 3RF2 A; 1XMO H; 4RAY A; 3MFI A; 1CQJ B; 4HR7 A; 2VUG A; 4EYI B; 4JI8 H; 2BR0 A; 3BAB A; 2NVY A; 4FBT A; 2W57 A; 4U7C A; 3FDS A; 2R8I A; 2WTF A; 5I47 A; 3KTM A; 1VAJ A; 1EHI A; 2W9A A; 1VBH A; 3TII A; 4U6P A; 5C1O A; 4XYL B; 2CQY A; 3QZ7 A; 4JI2 H; 5KG2 A; 2HVQ A; 2FP4 B; 3K5I A; 4YBZ B; 4RUC A; 2C35 B; 3HBL A; 3G8C A; 4G3I A; 3FKI A; 5JVL A; 3KAK A; 4BXX G; 3GID A; 1HR0 H; 2YRX A; 3PN1 A; 4MV1 A; 4O4I F; 2F4V H; 3JYZ A; 2WB1 A; 4O2A F; 2R86 A; 5KT7 A; 3GTJ A; 2J6S A; 4F4X A; 3N41 B; 3HOY G; 3FU1 A; 5KFU A; 3BJY A; 4ETS A; 3VMM A; 5KG7 A; 2IA6 A; 1JKJ B; 1UC9 A; 3RFC A; 4ECR A; 4DR6 H; 1RJQ A; 3Q8P B; 4DLK A; 3HOW G; 4O3Q A; 2O03 A; 3R5H A; 4EBD A; 2OH2 A; 1XDN A; 2JEG A; 4FM9 A; 5C8Y F; 4DR2 H; 5DLG A; 1RYR A; 2YZN A; 2YS7 A; 2NU8 B; 4DV2 H; 2XGP A; 1S10 A; 2JEF A; 3L4J A; 2J6U A; 3BQ2 A; 2ZJT A; 5KG5 A; 4J9N A; 2JA6 G; 3RJ0 A; 2ALZ A; 2QK4 A; 4MTE A; 4QJF A; 5KFB A; 2C00 A; 1RYS A; 4DV5 H; 3OHB A; 3BA9 A; 5L1K A; 2W6O A; 2ASD A; 1BGW A; 5CAE B; 4DV3 H; 3QZ8 A; 2BQ3 A; 3H20 A; 4F4Y A; 4J0M A; 1GYF A; 3N6X A; 3U9T A; 4JI5 H; 3E5N A; 1R9T A; 3KHH A; 4F4Z A; 1AY2 A; 3PVX A; 3TIN A; 4DV7 H; 3GIP A; 4J9L A; 4ED6 A; 4TQS A; 5IT9 W; 1PK8 A; 4XYM B; 4YAK B; 2M3K A; 2WAQ E; 3U9S A; 5LA6 F; 4I7H A; 4R8U A; 4DL7 A; 2R92 A; 3OTO H; 1SYX B; 5DQH A; 2RF4 A; 5JVD F; 5C5J A; 1DIK A; 2YS6 A; 3Q2O A; 5L1J A; 3M4I A; 3RB0 A; 4B3T H; 2Y0S E; 4C5B A; 1T36 A; 1VBG A; 5KFS A; 4EEQ A; 4IRD A; 5KFT A; 5KT5 A; 4JI6 H; 3RGZ A; 1N56 A; 3EYY A; 4UCT A; 3GV7 B; 3MR5 A; 4O3P A; 4EFB A; 2W7O A; 1RK6 A; 5BPF A; 3HB9 A; 4DV1 H; 5C44 G; 1M7J A; 5KFJ A; 2M7G A; 2ATL A; 3RTX A; 1HNZ H; 2GPW A; 2HVS A; 2R7Z A; 3I12 A; 4WD3 A; 2R8K A; 2VUM A; 1EUD B; 5FJ8 G; 1EYZ A; 5EWF A; 4MA0 A; 2W9B A; 4MTD A; 5KG0 A; 2HJW A; 1ZHS A; 3I4M G; 2UVV A; 3BAA A; 3RB3 A; 2R8H A; 2B63 G; 4LH6 A; 5KX5 F; 5KFQ A; 2UXB H; 4GKK H; 5CA0 F; 1IOV A; 5IYC G; 3PZP A; 4IZO A; 2YRW A; 3UFX B; 5IP9 G; 4QWC A; 4DV6 H; 5DLF A; 1Z2P X; 1JX4 A; 1N32 H; 5D1O A; 3G6X A; 3RB4 A; 2E5L H; 5KKN B; 2UXD H; 4RB0 A; 4V1J A; 2NU9 B; 4RZR A; 3TQ1 A; 1L2Z A; 3GIJ A; 4EGJ A; 4ECX A; 1M0T A; 2X0S A; 5D1P A; 5LXT F; 4JV0 A; 3V6J A; 4LF7 H; 3JRW A; 3KAJ A; 4ED2 A; 3H4D A; 3NGD A; 4X66 H; 4B3R H; 3ETJ A; 3FMA A; 2XIG A; 2UUB H; 2C28 A; 1I50 A; 3MWM A; 4IRK A; 1RJP A; 2WB1 E; 4J9K A; 5KFF A; 4BBS G; 3HKZ E; 2NVX A; 1X6Z A; 1TAE A; 2VPQ A; 3BA8 A; 3ORR A; 2FLN A; 2HVR A; 1I7N A; 4YP3 A; 2FK3 A; 3GQC A; 4OX9 H; 2W6P A; 3OUZ A; 3FKI G; 4YAJ B; 5J2T F; 5KFZ A; 4R8U B; 3M9O B; 2VQE H; 1S9F A; 3T5K A; 4Q8E A; 1X6P A; 3SE7 A; 5LYJ F; 1AUX A; 1WSC A; 1W96 A; 2RDI A; 3OSN A; 4DUZ H; 4IWY A; 2CKZ B; 2GLT A; 4HQ6 A; 1UNN C; 2AGQ A; 4F50 A; 3G6Y A; 1OQW A; 4A3D G; 1JDB B; 3LWB A; 3N40 P; 4Q43 A; 3Q8S B; 5KFY A; 4F4W A; 4MAM A; 3T5H A; 3KAL A; 5H80 A; 3MR6 A; 4A3K G; 1BJT A; 3G20 A; 5KFK A; 1ZET A; 2MCT A; 4X64 H; 4HYK A; 4DR1 H; 5JW8 A; 5KFH A; 2HI2 A; 3UQ8 A; 1ULZ A; 2DIK A; 2R7N A; 3JAM W; 4QW8 A; 2BQU A; 2HHH H; 2Q2U A; 3V6K A; 1RG0 A; 5L1L A; 1WH2 A; 1GSO A; 1KBL A; 1WCM A; 5FLM G; 4J9O A; 2W9B B; 2RGR A; 3RUP A; 4CC5 A; 3L4K A; 5KG1 A; 3M9M B; 4Q8F A; 2PY0 A; 4X62 H; 2JA8 G; 1B33 N; 3PO3 G; 4L1K A; 3GTM A; 5KFR A; 4EGQ A; 3OUU A; 1ZHQ A; 2PMZ A; 4O4H F; 5LMN H; 4B3M H; 4LF5 H; 3ORQ A; 3N6R A; 5C3E G; 2IP4 A; 5BR8 H; 5D1O B; 3WO0 A; 4Q44 A; 2V5A A; 3K5H A; 4ECS A; 1DGS A; 2V4Q A; 3G6V A; 5C1P A; 1XNQ H; 5DQG A; 4GLX A; 3HOX G; 4BY1 G; 1A0I A; 1TWF A; 2E2I A; 2XGQ A; 3R5X A; 1DV2 A; 2C22 A; 4O3O A; 4GC6 A; 4ECQ A; 2R92 G; 3N8D A; 5KFA A; 2V4R A; 4XZ3 B; 5KFC A; 4Y8V B; 1JIH A; 1VKZ A; 1T92 A; 5L9X A; 1T94 A; 4J9M A; 2P0A A; 5KFO A; 3Q8R B; 1TWC A; 3WO1 A; 5KFN A; 4JI3 H; 2FMA A; 2ZDQ A; 4TV8 F; 1HNW H; 4EBC A; 1UC8 A; 1Y14 B; 4ED7 A; 2AGP A; 1I94 H; 1FJG H; 1S0N A; 5DG9 A; 3R23 A; 4LSX A; 4ECY A; 2YYA A; 4UFZ A; 3L2P A; 4PWQ A; 4DV0 H; 1IBM H; 1Y1W A; 1B04 A; 2YZG A; 5KT3 A; 4JI1 H; 3PW2 A; 2HGS A; 4ECZ A; 2KSW A; 2R7Z G; 4DL6 A; 2VUM G; 2FLL A; 2RGV A; 4RAZ A; 3WNZ A; 5C4X G; 4AQY H; 3T5L A; 2FPG B; 5HV6 A; 4CC6 A; 3RAX A; 5KG6 A; 4DL3 A; 1TWA A; 4IHJ F; 2YCH A; 1GLV A; 2ZDH A; 5HBR B; 2UVW A; 4IRC A; 4A2B A; 5A2Q W; 2JEI A; 4ME6 A; 4MA5 A; 4QIW A; 3PO2 G; 1A9X A; 1KJ8 A; 4MV6 A; 3J80 W; 5L1I A; 4YB8 B; 2VA3 A; 1AUV A; 1P8L A; 4ZHQ F; 3V4Z A; #chains in the Genus database with same CATH homology 1ZQ7 A; 1WSC A; 1VAJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
