1BH3A

E1m, a116k mutant of rh. blastica porin
Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEASSFGDAQSSFFKYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (25-40)S1 (2-15)TIV1 (15-18)TI4 (101-104)TVIII1 (23-26)S16 (279-288)TII1 (19-22)S3 (45-56)TI1 (41-44)TII2 (56-59)TII3 (59-62)S4 (70-75)TIV4 (82-85)3H1 (88-90)TII4 (92-95)S7 (142-150)TI2 (94-97)S8 (163-171)TI3 (96-99)TI5 (106-109)S15 (265-273)S13 (235-244)TII'2 (215-218)TII5 (188-191)TI7 (125-128)TI8 (127-130)TIV6 (150-153)TIV5 (138-141)3H3 (185-187)TI10 (172-175)S9 (175-183)TIV8 (201-204)TIV7 (182-185)S12 (222-232)TI11 (203-206)S11 (206-214)S14 (252-262)TII'3 (232-235)TII6 (246-249)TII7 (262-265)TI13 (274-277)TI6 (122-125)TI9 (152-155)TI12 (218-221)S5 (78-83)S6 (131-137)3H2 (157-159)S10 (193-200)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Rhodobacter blasticus
publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1bh3A00
1H6S1 1BT9A 5FVNA 3SY7A 3FYXA 1OPFA 4GCQA 1OSMA 3SZVA 2QTKA 2XG6A 2ZLDA 1HXUA 1PRNA 3SY9A 3SYSA 4C69X 3PRNA 2ODJA 4FSPA 2XE2A 4BUMX 1GFOA 4LSEA 2ZFGA 2FGQX 4KR4A 6PRNA 5DL6A 2O4VA 2PRNA 3VY9X 5DL8A 4KRAA 2Y0LA 3UU2A 3O0EA 4RJWA 2XE3A 3VY8X 3POXA 3T0SA 3SZDA 3EMNX 3T20A 2XE1A 3POUA 2J4UP 1GFPA 3WI5A 5PRNA 3VZWX 3HW9A 3SYBA 3UPGA 1GFMA 4FOZA 8PRNA 1PHOA 1HXTA 3JTYA 4FT6A 3WI4A 1MPFA 4LSIA 5DL7A 3POQA 4KR8A 3NSGA 4FRTA 4LSHA 4AUIA 2Y0KA 1GFQA 1E54A 3VZTX 4FRXA 2K4TA 4FMSA 2FGRA 5JDPA 3VZUX 3K19A 4D64A 2OMFA 4D5UA 4RJXA 2XE5A 3A2SX 1GFNA 4D65A 2Y2XA 3HWBA 4LSFA 4GCPA 7PRNA 1HXXA 4JFBA 4GCSA 3T24A 2J1NA 2Y0HA 4FSOA 1BH3A 2PORA 5DL5A 3PORA
chains in the Genus database with same CATH superfamily
4XNKA 1T16A 1H6S1 2GE4A 3LK3A 1BT9A 2K0LA 3AA1A 3LK41 5FVNA 3SY7A 4AKRB 3FYXA 1OPFA 2R4LA 4GCQA 1OSMA 1QJPA 2WJQA 4FESA 3SZVA 2KC0A 2QTKA 2MNHA 2XG6A 3NJTA 3LK42 3PQSA 4FUVA 4O49A 2ZLDA 4QQ1A 1HXUA 3PGSA 5G26A 4GHBA 2KXPB 3LK2B 3PGUA 4AYID 1PRNA 3SY9A 4F4BA 2M06A 3SYSA 4C69X 3DWOX 3PRNA 1ZHTA 2MHLA 2ODJA 2XTQA 2XE2A 4FSPA 4RLCA 4AYNA 4BUMX 2LHFA 1GFOA 3QRAA 4AYMC 1MM5A 3AAAA 4LSEA 2KZ7A 1ZHYA 2JMMA 3DWNA 2ZFGA 3PGRA 4E1SA 3BRYA 5G39A 3BS0A 3A0HO 2FGQX 1Q9FA 3AA0B 3C5OA 4JCHA 4KR4A 5GV0A 3PQUA 4N58A 6PRNA 3A0BO 3DA3A 5DL6A 3VE1A 4C4VA 2O4VA 3AAEB 2R88A 5B5EO 3VE2A 5D5DA 3BRZA 2F1TA 4XNLA 5GTHO 4AKRA 2KDYA 4O4XA 4U9CA 5KAFO 2PRNA 3VY9X 5DL8A 3RBHA 4CTDA 1ORMA 4KRAA 2Y0LA 1MM4A 2KXPA 3AA6B 3UU2A 1T1LA 2F1VA 3QRCA 1QJ9A 2W80C 3O0EA 4RJWA 5AFUK 2XE3A 2N2MA 4K3BA 3GP6A 4PUXA 3TZGA 3VY8X 1G90A 4B61A 1P4TA 3HOLA 3V8UA 3POXA 3T0SA 1IZNB 3SZDA 4AFKA 3EMNX 4RL9A 3T20A 2W81C 2WVPA 2XE1A 4K3CA 5T5FA 5ADXK 3AA0A 4O4UA 2F1CX 2YNKA 3POUA 2J4UP 1GFPA 3WI5A 4PR7A 5PRNA 3HOEA 3VZWX 2X9KA 4O3YA 5IYUA 3HW9A 4UB6O 3SYBA 3DZMA 5DL5A 4AZLA 3UPGA 4RLBA 2LFUA 2IWVA 1GFMA 4FOZA 4N75A 4AKMA 4N74A 8PRNA 1YS5A 2ERVA 1PHOA 5KAIO 4FQEA 4PJ0O 3JTYA 4FT6A 3WI4A 1MPFA 1THQA 5GTIO 3JCUO 4E1TA 4LSIA 3LK2A 3POQA 5DL7A 4KR8A 4O3WA 3AA6A 3NSGA 4FRTA 3KVDD 4LSHA 2N2LA 1ZHXA 1GFQA 2JQYA 2Y0KA 3G7GA 4AUIA 3AA7B 5E79O 5ADXL 2IWWA 1E54A 4IL6O 3VZTX 5G38A 4Z3TA 2R4NA 4AYEC 1IZNA 2XMXA 2YPVA 3AA1B 3LK3B 1QJ8A 2XTRA 2K4TA 4FMSA 2FGRA 4FRXA 3WU2O 5JDPA 2AXTO 1S5LO 2Y7SA 3VZUX 3K19A 4N59A 3AAEA 5G3AA 4D64A 2OMFA 2M07A 3PORA 2X27X 4D5UA 4RJXA 4AYDC 5H2FO 2XE5A 3A2SX 5AFUL 1Q9GA 1GFNA 3KZIO 4D65A 2Y2XA 4GF4A 4G76A 3DA4A 4UB8O 1ZHZA 3PF1A 4FZNA 4O3XB 4LSFA 1BXWA 1ZHWA 4GCPA 3AAAB 7PRNA 2KZ7B 1HXXA 4JFBA 2R4PA 4GCSA 2R4OA 2WJRA 5EE2A 3T24A 4G75A 2J1NA 2Y0HA 2R8AA 4FSOA 1BH3A 5TISO 3UAQA 3AA7A 2PORA 4O3ZA 4C00A 5B66O 4FZLA 4FZMA 4C4VB 3HWBA 2R89A 1HXTA
chains in the Genus database with same CATH topology
4XNKA 1H6S1 2GE4A 3LK3A 1BT9A 2K0LA 3AA1A 3LK41 5FVNA 3SY7A 4AKRB 3FYXA 1OPFA 4GCQA 4AYNA 1OSMA 1QJPA 4FESA 3SZVA 2KC0A 2QTKA 2MNHA 2XG6A 3PQSA 3LK42 4FUVA 4O49A 4QQ1A 2ZLDA 1HXUA 5G26A 4AYID 4GHBA 2KXPB 3LK2B 1PRNA 3SY9A 4F4BA 2M06A 3SYSA 4C69X 3PRNA 1ZHTA 2XTQA 2MHLA 2ODJA 2XE2A 4FSPA 4RLCA 4BUMX 2LHFA 1GFOA 3QRAA 4AYMC 1MM5A 3AAAA 4LSEA 2KZ7A 1ZHYA 2JMMA 2ZFGA 4E1SA 3AA0B 2FGQX 1Q9FA 3C5OA 4JCHA 4KR4A 5GV0A 3PQUA 4N58A 6PRNA 3DA3A 5DL6A 3VE1A 2O4VA 3AAEB 3VE2A 5D5DA 4XNLA 2F1TA 4AKRA 2KDYA 4O4XA 4U9CA 2PRNA 3VY9X 5DL8A 3RBHA 1ORMA 4KRAA 2Y0LA 1MM4A 2KXPA 3AA6B 3UU2A 2F1VA 3QRCA 1QJ9A 2W80C 3O0EA 4RJWA 5AFUK 2XE3A 2N2MA 3GP6A 4PUXA 3TZGA 3VY8X 1G90A 4B61A 1P4TA 3HOLA 3V8UA 3POXA 3T0SA 1IZNB 3SZDA 4AFKA 3EMNX 4RL9A 3T20A 2W81C 2XE1A 5T5FA 5ADXK 3AA0A 4O4UA 3POUA 2YNKA 2J4UP 1GFPA 3WI5A 5PRNA 3HOEA 3VZWX 5IYUA 4O3YA 3HW9A 4AZLA 3SYBA 5DL5A 3UPGA 4RLBA 2LFUA 4AKMA 1GFMA 4FOZA 8PRNA 1YS5A 2ERVA 1PHOA 3JTYA 4FT6A 3WI4A 1MPFA 1THQA 4E1TA 4LSIA 3LK2A 3POQA 5DL7A 4KR8A 4O3WA 3AA6A 3NSGA 4FRTA 3KVDD 4LSHA 2N2LA 1ZHXA 1GFQA 2Y0KA 3G7GA 4AUIA 5ADXL 3AA7B 1E54A 3VZTX 4Z3TA 4AYEC 1IZNA 2XMXA 2YPVA 3AA1B 3LK3B 1QJ8A 2XTRA 2K4TA 4FMSA 2FGRA 4FRXA 5JDPA 2Y7SA 3VZUX 3K19A 4N59A 3AAEA 4D64A 2OMFA 2M07A 3PORA 2X27X 4D5UA 4RJXA 4AYDC 2XE5A 3A2SX 5AFUL 1Q9GA 1GFNA 4D65A 2Y2XA 4GF4A 4G76A 3DA4A 1ZHZA 4FZNA 4O3XB 4LSFA 1BXWA 1ZHWA 4GCPA 3AAAB 7PRNA 2KZ7B 1HXXA 4JFBA 4GCSA 5EE2A 3T24A 4G75A 2J1NA 2Y0HA 4FSOA 1BH3A 3UAQA 3AA7A 2PORA 4O3ZA 4FZLA 4FZMA 3HWBA 1HXTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H6S 1;  1BT9 A;  5FVN A;  3SY7 A;  3FYX A;  1OPF A;  4GCQ A;  1OSM A;  3SZV A;  2QTK A;  2XG6 A;  2ZLD A;  1HXU A;  1PRN A;  3SY9 A;  3SYS A;  4C69 X;  3PRN A;  2ODJ A;  4FSP A;  2XE2 A;  4BUM X;  1GFO A;  4LSE A;  2ZFG A;  2FGQ X;  4KR4 A;  6PRN A;  5DL6 A;  2O4V A;  2PRN A;  3VY9 X;  5DL8 A;  4KRA A;  2Y0L A;  3UU2 A;  3O0E A;  4RJW A;  2XE3 A;  3VY8 X;  3POX A;  3T0S A;  3SZD A;  3EMN X;  3T20 A;  2XE1 A;  3POU A;  2J4U P;  1GFP A;  3WI5 A;  5PRN A;  3VZW X;  3HW9 A;  3SYB A;  3UPG A;  1GFM A;  4FOZ A;  8PRN A;  1PHO A;  1HXT A;  3JTY A;  4FT6 A;  3WI4 A;  1MPF A;  4LSI A;  5DL7 A;  3POQ A;  4KR8 A;  3NSG A;  4FRT A;  4LSH A;  4AUI A;  2Y0K A;  1GFQ A;  1E54 A;  3VZT X;  4FRX A;  2K4T A;  4FMS A;  2FGR A;  5JDP A;  3VZU X;  3K19 A;  4D64 A;  2OMF A;  4D5U A;  4RJX A;  2XE5 A;  3A2S X;  1GFN A;  4D65 A;  2Y2X A;  3HWB A;  4LSF A;  4GCP A;  7PRN A;  1HXX A;  4JFB A;  4GCS A;  3T24 A;  2J1N A;  2Y0H A;  4FSO A;  1BH3 A;  2POR A;  5DL5 A;  3POR A; 
#chains in the Genus database with same CATH topology
 4XNK A;  1T16 A;  1H6S 1;  2GE4 A;  3LK3 A;  1BT9 A;  2K0L A;  3AA1 A;  3LK4 1;  5FVN A;  3SY7 A;  4AKR B;  3FYX A;  1OPF A;  2R4L A;  4GCQ A;  1OSM A;  1QJP A;  2WJQ A;  4FES A;  3SZV A;  2KC0 A;  2QTK A;  2MNH A;  2XG6 A;  3NJT A;  3LK4 2;  3PQS A;  4FUV A;  4O49 A;  2ZLD A;  4QQ1 A;  1HXU A;  3PGS A;  5G26 A;  4GHB A;  2KXP B;  3LK2 B;  3PGU A;  4AYI D;  1PRN A;  3SY9 A;  4F4B A;  2M06 A;  3SYS A;  4C69 X;  3DWO X;  3PRN A;  1ZHT A;  2MHL A;  2ODJ A;  2XTQ A;  2XE2 A;  4FSP A;  4RLC A;  4AYN A;  4BUM X;  2LHF A;  1GFO A;  3QRA A;  4AYM C;  1MM5 A;  3AAA A;  4LSE A;  2KZ7 A;  1ZHY A;  2JMM A;  3DWN A;  2ZFG A;  3PGR A;  4E1S A;  3BRY A;  5G39 A;  3BS0 A;  3A0H O;  2FGQ X;  1Q9F A;  3AA0 B;  3C5O A;  4JCH A;  4KR4 A;  5GV0 A;  3PQU A;  4N58 A;  6PRN A;  3A0B O;  3DA3 A;  5DL6 A;  3VE1 A;  4C4V A;  2O4V A;  3AAE B;  2R88 A;  5B5E O;  3VE2 A;  5D5D A;  3BRZ A;  2F1T A;  4XNL A;  5GTH O;  4AKR A;  2KDY A;  4O4X A;  4U9C A;  5KAF O;  2PRN A;  3VY9 X;  5DL8 A;  3RBH A;  4CTD A;  1ORM A;  4KRA A;  2Y0L A;  1MM4 A;  2KXP A;  3AA6 B;  3UU2 A;  1T1L A;  2F1V A;  3QRC A;  1QJ9 A;  2W80 C;  3O0E A;  4RJW A;  5AFU K;  2XE3 A;  2N2M A;  4K3B A;  3GP6 A;  4PUX A;  3TZG A;  3VY8 X;  1G90 A;  4B61 A;  1P4T A;  3HOL A;  3V8U A;  3POX A;  3T0S A;  1IZN B;  3SZD A;  4AFK A;  3EMN X;  4RL9 A;  3T20 A;  2W81 C;  2WVP A;  2XE1 A;  4K3C A;  5T5F A;  5ADX K;  3AA0 A;  4O4U A;  2F1C X;  2YNK A;  3POU A;  2J4U P;  1GFP A;  3WI5 A;  4PR7 A;  5PRN A;  3HOE A;  3VZW X;  2X9K A;  4O3Y A;  5IYU A;  3HW9 A;  4UB6 O;  3SYB A;  3DZM A;  5DL5 A;  4AZL A;  3UPG A;  4RLB A;  2LFU A;  2IWV A;  1GFM A;  4FOZ A;  4N75 A;  4AKM A;  4N74 A;  8PRN A;  1YS5 A;  2ERV A;  1PHO A;  5KAI O;  4FQE A;  4PJ0 O;  3JTY A;  4FT6 A;  3WI4 A;  1MPF A;  1THQ A;  5GTI O;  3JCU O;  4E1T A;  4LSI A;  3LK2 A;  3POQ A;  5DL7 A;  4KR8 A;  4O3W A;  3AA6 A;  3NSG A;  4FRT A;  3KVD D;  4LSH A;  2N2L A;  1ZHX A;  1GFQ A;  2JQY A;  2Y0K A;  3G7G A;  4AUI A;  3AA7 B;  5E79 O;  5ADX L;  2IWW A;  1E54 A;  4IL6 O;  3VZT X;  5G38 A;  4Z3T A;  2R4N A;  4AYE C;  1IZN A;  2XMX A;  2YPV A;  3AA1 B;  3LK3 B;  1QJ8 A;  2XTR A;  2K4T A;  4FMS A;  2FGR A;  4FRX A;  3WU2 O;  5JDP A;  2AXT O;  1S5L O;  2Y7S A;  3VZU X;  3K19 A;  4N59 A;  3AAE A;  5G3A A;  4D64 A;  2OMF A;  2M07 A;  3POR A;  2X27 X;  4D5U A;  4RJX A;  4AYD C;  5H2F O;  2XE5 A;  3A2S X;  5AFU L;  1Q9G A;  1GFN A;  3KZI O;  4D65 A;  2Y2X A;  4GF4 A;  4G76 A;  3DA4 A;  4UB8 O;  1ZHZ A;  3PF1 A;  4FZN A;  4O3X B;  4LSF A;  1BXW A;  1ZHW A;  4GCP A;  3AAA B;  7PRN A;  2KZ7 B;  1HXX A;  4JFB A;  2R4P A;  4GCS A;  2R4O A;  2WJR A;  5EE2 A;  3T24 A;  4G75 A;  2J1N A;  2Y0H A;  2R8A A;  4FSO A;  1BH3 A;  5TIS O;  3UAQ A;  3AA7 A;  2POR A;  4O3Z A;  4C00 A;  5B66 O;  4FZL A;  4FZM A;  4C4V B;  3HWB A;  2R89 A;  1HXT A; 
#chains in the Genus database with same CATH homology
 4XNK A;  1H6S 1;  2GE4 A;  3LK3 A;  1BT9 A;  2K0L A;  3AA1 A;  3LK4 1;  5FVN A;  3SY7 A;  4AKR B;  3FYX A;  1OPF A;  4GCQ A;  4AYN A;  1OSM A;  1QJP A;  4FES A;  3SZV A;  2KC0 A;  2QTK A;  2MNH A;  2XG6 A;  3PQS A;  3LK4 2;  4FUV A;  4O49 A;  4QQ1 A;  2ZLD A;  1HXU A;  5G26 A;  4AYI D;  4GHB A;  2KXP B;  3LK2 B;  1PRN A;  3SY9 A;  4F4B A;  2M06 A;  3SYS A;  4C69 X;  3PRN A;  1ZHT A;  2XTQ A;  2MHL A;  2ODJ A;  2XE2 A;  4FSP A;  4RLC A;  4BUM X;  2LHF A;  1GFO A;  3QRA A;  4AYM C;  1MM5 A;  3AAA A;  4LSE A;  2KZ7 A;  1ZHY A;  2JMM A;  2ZFG A;  4E1S A;  3AA0 B;  2FGQ X;  1Q9F A;  3C5O A;  4JCH A;  4KR4 A;  5GV0 A;  3PQU A;  4N58 A;  6PRN A;  3DA3 A;  5DL6 A;  3VE1 A;  2O4V A;  3AAE B;  3VE2 A;  5D5D A;  4XNL A;  2F1T A;  4AKR A;  2KDY A;  4O4X A;  4U9C A;  2PRN A;  3VY9 X;  5DL8 A;  3RBH A;  1ORM A;  4KRA A;  2Y0L A;  1MM4 A;  2KXP A;  3AA6 B;  3UU2 A;  2F1V A;  3QRC A;  1QJ9 A;  2W80 C;  3O0E A;  4RJW A;  5AFU K;  2XE3 A;  2N2M A;  3GP6 A;  4PUX A;  3TZG A;  3VY8 X;  1G90 A;  4B61 A;  1P4T A;  3HOL A;  3V8U A;  3POX A;  3T0S A;  1IZN B;  3SZD A;  4AFK A;  3EMN X;  4RL9 A;  3T20 A;  2W81 C;  2XE1 A;  5T5F A;  5ADX K;  3AA0 A;  4O4U A;  3POU A;  2YNK A;  2J4U P;  1GFP A;  3WI5 A;  5PRN A;  3HOE A;  3VZW X;  5IYU A;  4O3Y A;  3HW9 A;  4AZL A;  3SYB A;  5DL5 A;  3UPG A;  4RLB A;  2LFU A;  4AKM A;  1GFM A;  4FOZ A;  8PRN A;  1YS5 A;  2ERV A;  1PHO A;  3JTY A;  4FT6 A;  3WI4 A;  1MPF A;  1THQ A;  4E1T A;  4LSI A;  3LK2 A;  3POQ A;  5DL7 A;  4KR8 A;  4O3W A;  3AA6 A;  3NSG A;  4FRT A;  3KVD D;  4LSH A;  2N2L A;  1ZHX A;  1GFQ A;  2Y0K A;  3G7G A;  4AUI A;  5ADX L;  3AA7 B;  1E54 A;  3VZT X;  4Z3T A;  4AYE C;  1IZN A;  2XMX A;  2YPV A;  3AA1 B;  3LK3 B;  1QJ8 A;  2XTR A;  2K4T A;  4FMS A;  2FGR A;  4FRX A;  5JDP A;  2Y7S A;  3VZU X;  3K19 A;  4N59 A;  3AAE A;  4D64 A;  2OMF A;  2M07 A;  3POR A;  2X27 X;  4D5U A;  4RJX A;  4AYD C;  2XE5 A;  3A2S X;  5AFU L;  1Q9G A;  1GFN A;  4D65 A;  2Y2X A;  4GF4 A;  4G76 A;  3DA4 A;  1ZHZ A;  4FZN A;  4O3X B;  4LSF A;  1BXW A;  1ZHW A;  4GCP A;  3AAA B;  7PRN A;  2KZ7 B;  1HXX A;  4JFB A;  4GCS A;  5EE2 A;  3T24 A;  4G75 A;  2J1N A;  2Y0H A;  4FSO A;  1BH3 A;  3UAQ A;  3AA7 A;  2POR A;  4O3Z A;  4FZL A;  4FZM A;  3HWB A;  1HXT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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