3PGSA

Phe3gly mutant of ecfadl
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
427
structure length
427
Chain Sequence
AGGQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords Long-chain fatty acid transport protein
publication title From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 127
structure length 427
sequence length 427
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3pgsA00
3PGRA 2R8AA 3BRYA 1T1LA 3DWNA 2R4NA 3DWOX 3PGSA 3PF1A 1T16A 2R4PA 2R88A 2R4LA 3BS0A 3BRZA 2R89A 3PGUA 2R4OA
chains in the Genus database with same CATH superfamily
3A2SX 4RLBA 4C4VB 4UB6O 4QQ1A 5AFUL 1ZHTA 1ZHZA 4PJ0O 2Y0KA 2LFUA 1PHOA 4LSFA 3WI5A 4AKMA 4N74A 2KZ7B 3AA6B 4FSPA 1T1LA 2Y2XA 2J4UP 2W81C 5ADXK 2F1TA 4K3BA 3K19A 4KRAA 4Z3TA 2F1CX 3VY9X 1BT9A 3HOLA 2KXPB 3DA4A 3PQSA 5G39A 4FRTA 4LSEA 1HXUA 2KZ7A 2ZFGA 2XE2A 2LHFA 4GCQA 3VZWX 2X9KA 2YPVA 3LK2A 4FQEA 4D64A 3QRCA 1GFMA 1BH3A 3DWOX 5FVNA 3LK42 3SYSA 5DL8A 2AXTO 2XTRA 4IL6O 2FGRA 2XE1A 4N59A 1P4TA 5ADXL 3SZDA 5DL7A 5G38A 3AA0A 2R8AA 4AYMC 3KVDD 3AAEA 2R4PA 2R88A 4O3ZA 2F1VA 4FZMA 3VY8X 4O3XB 4AKRA 3RBHA 2ERVA 1GFPA 3SYBA 3TZGA 4LSHA 6PRNA 4O3WA 1OSMA 2Y0LA 3BRYA 2O4VA 2Y0HA 2JQYA 3V8UA 1E54A 4C4VA 4GCPA 4XNLA 1PRNA 4C69X 2R4OA 3HW9A 2GE4A 8PRNA 3T20A 4FSOA 5GTHO 5H2FO 3LK41 3POXA 4FZNA 3PQUA 4GCSA 4RJWA 4N75A 3LK3B 3AA6A 5G26A 1Q9FA 2K0LA 1HXTA 2M06A 4FRXA 4G76A 4GHBA 1ZHWA 2YNKA 3PGSA 4RL9A 4FMSA 1ZHXA 3AA7B 4E1SA 2KXPA 3FYXA 4FUVA 4JFBA 4O4UA 2KC0A 2XE3A 2XTQA 3LK3A 5D5DA 5GTIO 4CTDA 3PGRA 2IWVA 5B66O 5IYUA 5KAIO 4E1TA 4XNKA 4U9CA 2N2MA 3BS0A 1YS5A 4FOZA 3PRNA 1OPFA 1IZNB 1MPFA 2MNHA 3DZMA 3JTYA 3VZUX 3AA7A 2FGQX 4LSIA 4O3YA 2OMFA 4PUXA 4BUMX 1GFNA 4F4BA 1G90A 3T24A 3G7GA 4AYEC 4AYNA 4C00A 3PGUA 5KAFO 4D5UA 5G3AA 2ZLDA 2K4TA 3DWNA 4GF4A 3A0HO 4AYDC 4JCHA 4AZLA 2R4LA 5GV0A 2PORA 4FZLA 1QJ9A 4N58A 4RJXA 3A0BO 3SY7A 3UPGA 1QJ8A 5DL5A 3NSGA 1MM4A 3POUA 1GFQA 3C5OA 4UB8O 5T5FA 2IWWA 5PRNA 3SY9A 3VZTX 5E79O 2R89A 4AYID 4FESA 3VE1A 4D65A 3PORA 3DA3A 1T16A 4AUIA 4O4XA 2M07A 1BXWA 3EMNX 1S5LO 3UU2A 2QTKA 2W80C 1QJPA 3HOEA 4KR4A 5JDPA 2XG6A 1THQA 3LK2B 2ODJA 2R4NA 2WJRA 1ZHYA 2XE5A 2XMXA 4B61A 2J1NA 2Y7SA 3GP6A 3BRZA 3HWBA 3QRAA 5EE2A 5DL6A 4K3CA 3WI4A 3SZVA 3POQA 2JMMA 3JCUO 4G75A 4PR7A 2MHLA 1Q9GA 2N2LA 1IZNA 3PF1A 3AA1B 3AAAB 3AA0B 4FT6A 1ORMA 2PRNA 4O49A 3WU2O 5AFUK 3T0SA 1HXXA 3AAEB 4AFKA 5B5EO 1GFOA 4AKRB 1H6S1 3VE2A 4KR8A 2X27X 3UAQA 3KZIO 7PRNA 5TISO 2KDYA 3O0EA 3NJTA 2WVPA 4RLCA 1MM5A 2WJQA 3AA1A 3AAAA
chains in the Genus database with same CATH topology
3PGRA 2R8AA 3BRYA 1T1LA 3DWNA 2R4NA 3DWOX 3PGSA 3PF1A 1T16A 2R4PA 2R88A 2R4LA 3BS0A 3BRZA 2R89A 3PGUA 2R4OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PGR A;  2R8A A;  3BRY A;  1T1L A;  3DWN A;  2R4N A;  3DWO X;  3PGS A;  3PF1 A;  1T16 A;  2R4P A;  2R88 A;  2R4L A;  3BS0 A;  3BRZ A;  2R89 A;  3PGU A;  2R4O A; 
#chains in the Genus database with same CATH topology
 3A2S X;  4RLB A;  4C4V B;  4UB6 O;  4QQ1 A;  5AFU L;  1ZHT A;  1ZHZ A;  4PJ0 O;  2Y0K A;  2LFU A;  1PHO A;  4LSF A;  3WI5 A;  4AKM A;  4N74 A;  2KZ7 B;  3AA6 B;  4FSP A;  1T1L A;  2Y2X A;  2J4U P;  2W81 C;  5ADX K;  2F1T A;  4K3B A;  3K19 A;  4KRA A;  4Z3T A;  2F1C X;  3VY9 X;  1BT9 A;  3HOL A;  2KXP B;  3DA4 A;  3PQS A;  5G39 A;  4FRT A;  4LSE A;  1HXU A;  2KZ7 A;  2ZFG A;  2XE2 A;  2LHF A;  4GCQ A;  3VZW X;  2X9K A;  2YPV A;  3LK2 A;  4FQE A;  4D64 A;  3QRC A;  1GFM A;  1BH3 A;  3DWO X;  5FVN A;  3LK4 2;  3SYS A;  5DL8 A;  2AXT O;  2XTR A;  4IL6 O;  2FGR A;  2XE1 A;  4N59 A;  1P4T A;  5ADX L;  3SZD A;  5DL7 A;  5G38 A;  3AA0 A;  2R8A A;  4AYM C;  3KVD D;  3AAE A;  2R4P A;  2R88 A;  4O3Z A;  2F1V A;  4FZM A;  3VY8 X;  4O3X B;  4AKR A;  3RBH A;  2ERV A;  1GFP A;  3SYB A;  3TZG A;  4LSH A;  6PRN A;  4O3W A;  1OSM A;  2Y0L A;  3BRY A;  2O4V A;  2Y0H A;  2JQY A;  3V8U A;  1E54 A;  4C4V A;  4GCP A;  4XNL A;  1PRN A;  4C69 X;  2R4O A;  3HW9 A;  2GE4 A;  8PRN A;  3T20 A;  4FSO A;  5GTH O;  5H2F O;  3LK4 1;  3POX A;  4FZN A;  3PQU A;  4GCS A;  4RJW A;  4N75 A;  3LK3 B;  3AA6 A;  5G26 A;  1Q9F A;  2K0L A;  1HXT A;  2M06 A;  4FRX A;  4G76 A;  4GHB A;  1ZHW A;  2YNK A;  3PGS A;  4RL9 A;  4FMS A;  1ZHX A;  3AA7 B;  4E1S A;  2KXP A;  3FYX A;  4FUV A;  4JFB A;  4O4U A;  2KC0 A;  2XE3 A;  2XTQ A;  3LK3 A;  5D5D A;  5GTI O;  4CTD A;  3PGR A;  2IWV A;  5B66 O;  5IYU A;  5KAI O;  4E1T A;  4XNK A;  4U9C A;  2N2M A;  3BS0 A;  1YS5 A;  4FOZ A;  3PRN A;  1OPF A;  1IZN B;  1MPF A;  2MNH A;  3DZM A;  3JTY A;  3VZU X;  3AA7 A;  2FGQ X;  4LSI A;  4O3Y A;  2OMF A;  4PUX A;  4BUM X;  1GFN A;  4F4B A;  1G90 A;  3T24 A;  3G7G A;  4AYE C;  4AYN A;  4C00 A;  3PGU A;  5KAF O;  4D5U A;  5G3A A;  2ZLD A;  2K4T A;  3DWN A;  4GF4 A;  3A0H O;  4AYD C;  4JCH A;  4AZL A;  2R4L A;  5GV0 A;  2POR A;  4FZL A;  1QJ9 A;  4N58 A;  4RJX A;  3A0B O;  3SY7 A;  3UPG A;  1QJ8 A;  5DL5 A;  3NSG A;  1MM4 A;  3POU A;  1GFQ A;  3C5O A;  4UB8 O;  5T5F A;  2IWW A;  5PRN A;  3SY9 A;  3VZT X;  5E79 O;  2R89 A;  4AYI D;  4FES A;  3VE1 A;  4D65 A;  3POR A;  3DA3 A;  1T16 A;  4AUI A;  4O4X A;  2M07 A;  1BXW A;  3EMN X;  1S5L O;  3UU2 A;  2QTK A;  2W80 C;  1QJP A;  3HOE A;  4KR4 A;  5JDP A;  2XG6 A;  1THQ A;  3LK2 B;  2ODJ A;  2R4N A;  2WJR A;  1ZHY A;  2XE5 A;  2XMX A;  4B61 A;  2J1N A;  2Y7S A;  3GP6 A;  3BRZ A;  3HWB A;  3QRA A;  5EE2 A;  5DL6 A;  4K3C A;  3WI4 A;  3SZV A;  3POQ A;  2JMM A;  3JCU O;  4G75 A;  4PR7 A;  2MHL A;  1Q9G A;  2N2L A;  1IZN A;  3PF1 A;  3AA1 B;  3AAA B;  3AA0 B;  4FT6 A;  1ORM A;  2PRN A;  4O49 A;  3WU2 O;  5AFU K;  3T0S A;  1HXX A;  3AAE B;  4AFK A;  5B5E O;  1GFO A;  4AKR B;  1H6S 1;  3VE2 A;  4KR8 A;  2X27 X;  3UAQ A;  3KZI O;  7PRN A;  5TIS O;  2KDY A;  3O0E A;  3NJT A;  2WVP A;  4RLC A;  1MM5 A;  2WJQ A;  3AA1 A;  3AAA A; 
#chains in the Genus database with same CATH homology
 3PGR A;  2R8A A;  3BRY A;  1T1L A;  3DWN A;  2R4N A;  3DWO X;  3PGS A;  3PF1 A;  1T16 A;  2R4P A;  2R88 A;  2R4L A;  3BS0 A;  3BRZ A;  2R89 A;  3PGU A;  2R4O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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