3A2SX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with sucrose
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein II
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 83
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2009-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3a2sX00
3HWBA 2OMFA 4JFBA 2FGQX 3EMNX 2QTKA 1BT9A 2XE1A 4FRTA 3T0SA 5JDPA 3POQA 8PRNA 3JTYA 4GCSA 2ZLDA 4C69X 1OSMA 3A2SX 3T20A 4LSFA 2FGRA 2Y2XA 3PRNA 4KRAA 1BH3A 5DL6A 3NSGA 3SY7A 3SY9A 4D64A 4BUMX 3PORA 5FVNA 2ODJA 4RJXA 1HXUA 1E54A 3POUA 3O0EA 1H6S1 3T24A 2Y0KA 5PRNA 4AUIA 7PRNA 1GFQA 1GFMA 2J4UP 2XE2A 4KR8A 4FMSA 4RJWA 1GFPA 1PHOA 2J1NA 3SYSA 3K19A 1MPFA 3UU2A 3VY9X 3SZDA 3SZVA 2Y0LA 3FYXA 3VZTX 2ZFGA 1OPFA 1HXTA 5DL8A 2XE3A 4FSPA 3VZUX 2O4VA 4LSEA 3WI5A 4LSIA 2K4TA 3POXA 4D5UA 3VY8X 4FT6A 4D65A 3SYBA 3UPGA 1GFNA 4FSOA 3WI4A 4FOZA 4GCQA 6PRNA 2XE5A 1PRNA 3VZWX 4GCPA 2PRNA 2XG6A 5DL5A 4LSHA 4FRXA 2PORA 5DL7A 3HW9A 2Y0HA 4KR4A 1GFOA 1HXXA
chains in the Genus database with same CATH superfamily
3HWBA 2OMFA 3LK42 4JFBA 2R4OA 2FGQX 2X9KA 3DA3A 3EMNX 2QTKA 4K3CA 2R89A 1BT9A 2XE1A 3BRZA 4FRTA 3T0SA 4O3XB 3POQA 5D5DA 3WU2O 2W80C 5JDPA 8PRNA 4JCHA 3JTYA 4O4XA 2ERVA 4GCSA 2R4LA 2ZLDA 3UAQA 5ADXK 2XMXA 4C69X 1OSMA 5E79O 3A2SX 3T20A 4UB8O 4FZNA 1T1LA 3AAAA 4LSFA 3VE1A 1MM5A 2YNKA 2FGRA 2Y2XA 3AA6A 3HOEA 3PRNA 3PGRA 4N75A 4PJ0O 4AYMC 4KRAA 4E1TA 2R4PA 1BH3A 5DL6A 4CTDA 3NSGA 3SY7A 2N2MA 4AKRA 2IWWA 1YS5A 2F1TA 3KVDD 3PGUA 3SY9A 1Q9FA 3AAEB 3TZGA 4D64A 3AA1B 3JCUO 2W81C 2X27X 5G26A 3PORA 5FVNA 2ODJA 4RJXA 4BUMX 5AFUK 5B5EO 1QJPA 1HXUA 4C4VA 2F1CX 1E54A 4N59A 5GV0A 3POUA 4K3BA 3O0EA 3RBHA 1H6S1 5EE2A 3T24A 4G75A 4AKRB 1P4TA 5B66O 2Y0KA 3PGSA 3AA7B 4AKMA 5PRNA 4AUIA 4AYNA 4C00A 7PRNA 1QJ9A 1ZHTA 4B61A 4F4BA 3HOLA 1GFQA 3DWOX 2JQYA 5GTIO 1GFMA 4O3YA 4AYID 1IZNB 2J4UP 2XE2A 4KR8A 2LFUA 4FMSA 1GFPA 1PHOA 2K0LA 4RJWA 2J1NA 3SYSA 3K19A 2KDYA 1MPFA 2KZ7A 3AA0A 4O49A 3UU2A 4U9CA 3VY9X 4O3ZA 4XNKA 3SZDA 4IL6O 3KZIO 4FZLA 1MM4A 2R4NA 2MNHA 4RLBA 2Y0LA 3FYXA 4FZMA 3SZVA 3VZTX 4AYDC 2ZFGA 3LK2A 5H2FO 1OPFA 3AAAB 1HXTA 1G90A 3A0HO 5TISO 2KZ7B 3AA6B 4FQEA 5DL8A 1Q9GA 2M06A 2XE3A 3BRYA 4FSPA 3G7GA 4PUXA 5T5FA 3VZUX 2KXPA 3C5OA 5GTHO 5G39A 3BS0A 2O4VA 4LSEA 3PF1A 3VE2A 3GP6A 2XTQA 2LHFA 4C4VB 2F1VA 5KAIO 3WI5A 3LK3A 1S5LO 4LSIA 2K4TA 3POXA 4D5UA 4Z3TA 3A0BO 2R88A 3NJTA 3VY8X 4FT6A 4FUVA 3DZMA 4E1SA 2R8AA 2AXTO 4N74A 4D65A 2GE4A 2N2LA 3SYBA 3PQSA 4AFKA 3UPGA 1BXWA 1GFNA 2WVPA 4FSOA 3LK3B 5G3AA 3WI4A 2MHLA 3DA4A 5ADXL 4PR7A 4FOZA 4RLCA 3AA0B 3V8UA 4O4UA 4GCQA 4XNLA 6PRNA 2WJQA 2JMMA 4FESA 4O3WA 2XE5A 3PQUA 2KC0A 3QRCA 1PRNA 3VZWX 3LK41 1ZHZA 3AAEA 2M07A 3LK2B 4G76A 3AA1A 4GCPA 1ORMA 2PRNA 4AZLA 1ZHWA 1ZHYA 2XG6A 5AFUL 2KXPB 4RL9A 3DWNA 4N58A 4QQ1A 5DL5A 4LSHA 5KAFO 1THQA 4GHBA 5G38A 2YPVA 3AA7A 2IWVA 4FRXA 2PORA 2WJRA 2XTRA 2Y7SA 3HW9A 2Y0HA 4KR4A 4UB6O 5DL7A 3QRAA 1GFOA 4GF4A 1ZHXA 1T16A 4AYEC 1HXXA 5IYUA 1IZNA 1QJ8A
chains in the Genus database with same CATH topology
3HWBA 2OMFA 3LK42 4JFBA 2FGQX 3EMNX 3DA3A 2QTKA 1BT9A 2XE1A 4FRTA 3T0SA 5JDPA 4O3XB 3POQA 5D5DA 2W80C 8PRNA 4JCHA 3JTYA 4O4XA 2ERVA 4GCSA 2ZLDA 3UAQA 5ADXK 2XMXA 4C69X 1OSMA 3A2SX 3T20A 4FZNA 3AAAA 4LSFA 3VE1A 1MM5A 2YNKA 2FGRA 2Y2XA 3AA6A 3HOEA 3PRNA 4E1TA 4AYMC 4KRAA 1BH3A 5DL6A 3NSGA 3SY7A 2N2MA 4AKRA 1YS5A 2F1TA 3KVDD 3SY9A 1Q9FA 3AAEB 3TZGA 4D64A 3AA1B 2W81C 2X27X 5G26A 3PORA 5FVNA 2ODJA 4RJXA 4BUMX 5AFUK 1QJPA 1HXUA 1E54A 4N59A 5GV0A 3POUA 3RBHA 3O0EA 4AKRB 1H6S1 5EE2A 3T24A 4G75A 1P4TA 2Y0KA 3AA7B 4AKMA 5PRNA 4AUIA 4AYNA 7PRNA 1QJ9A 1ZHTA 4B61A 4F4BA 3HOLA 1GFQA 1GFMA 4O3YA 4AYID 1IZNB 2J4UP 2XE2A 4KR8A 2LFUA 4FMSA 1GFPA 1PHOA 2K0LA 4RJWA 2J1NA 3SYSA 3K19A 2KDYA 1MPFA 2KZ7A 3AA0A 4O49A 3UU2A 4U9CA 3VY9X 4O3ZA 4XNKA 3SZDA 4FZLA 1MM4A 4RLBA 2MNHA 3SZVA 2Y0LA 3FYXA 4FZMA 3VZTX 4AYDC 2ZFGA 3LK2A 1OPFA 3AAAB 1HXTA 1G90A 2KZ7B 3AA6B 5DL8A 1Q9GA 2M06A 2XE3A 4FSPA 4PUXA 3G7GA 5T5FA 3VZUX 2KXPA 3C5OA 2O4VA 4LSEA 3VE2A 3GP6A 2XTQA 2LHFA 2F1VA 3WI5A 3LK3A 4LSIA 2K4TA 3POXA 4D5UA 4Z3TA 3VY8X 4FT6A 4FUVA 4E1SA 4D65A 2GE4A 2N2LA 3SYBA 3PQSA 4AFKA 3UPGA 1BXWA 1GFNA 4FSOA 3LK3B 3WI4A 2MHLA 3DA4A 5ADXL 4FOZA 4RLCA 3AA0B 3V8UA 4O4UA 4GCQA 4XNLA 6PRNA 2JMMA 4FESA 4O3WA 2XE5A 3PQUA 2KC0A 3QRCA 1PRNA 3VZWX 3LK41 1ZHZA 3AAEA 2M07A 3LK2B 4G76A 3AA1A 4GCPA 1ORMA 2PRNA 4AZLA 1ZHWA 1ZHYA 2XG6A 5AFUL 2KXPB 4RL9A 4N58A 4QQ1A 5DL5A 4LSHA 1THQA 4GHBA 2YPVA 3AA7A 4FRXA 2PORA 2XTRA 2Y7SA 3HW9A 2Y0HA 4KR4A 5DL7A 3QRAA 1GFOA 4GF4A 1ZHXA 4AYEC 1HXXA 5IYUA 1IZNA 1QJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HWB A;  2OMF A;  4JFB A;  2FGQ X;  3EMN X;  2QTK A;  1BT9 A;  2XE1 A;  4FRT A;  3T0S A;  5JDP A;  3POQ A;  8PRN A;  3JTY A;  4GCS A;  2ZLD A;  4C69 X;  1OSM A;  3A2S X;  3T20 A;  4LSF A;  2FGR A;  2Y2X A;  3PRN A;  4KRA A;  1BH3 A;  5DL6 A;  3NSG A;  3SY7 A;  3SY9 A;  4D64 A;  4BUM X;  3POR A;  5FVN A;  2ODJ A;  4RJX A;  1HXU A;  1E54 A;  3POU A;  3O0E A;  1H6S 1;  3T24 A;  2Y0K A;  5PRN A;  4AUI A;  7PRN A;  1GFQ A;  1GFM A;  2J4U P;  2XE2 A;  4KR8 A;  4FMS A;  4RJW A;  1GFP A;  1PHO A;  2J1N A;  3SYS A;  3K19 A;  1MPF A;  3UU2 A;  3VY9 X;  3SZD A;  3SZV A;  2Y0L A;  3FYX A;  3VZT X;  2ZFG A;  1OPF A;  1HXT A;  5DL8 A;  2XE3 A;  4FSP A;  3VZU X;  2O4V A;  4LSE A;  3WI5 A;  4LSI A;  2K4T A;  3POX A;  4D5U A;  3VY8 X;  4FT6 A;  4D65 A;  3SYB A;  3UPG A;  1GFN A;  4FSO A;  3WI4 A;  4FOZ A;  4GCQ A;  6PRN A;  2XE5 A;  1PRN A;  3VZW X;  4GCP A;  2PRN A;  2XG6 A;  5DL5 A;  4LSH A;  4FRX A;  2POR A;  5DL7 A;  3HW9 A;  2Y0H A;  4KR4 A;  1GFO A;  1HXX A; 
#chains in the Genus database with same CATH topology
 3HWB A;  2OMF A;  3LK4 2;  4JFB A;  2R4O A;  2FGQ X;  2X9K A;  3DA3 A;  3EMN X;  2QTK A;  4K3C A;  2R89 A;  1BT9 A;  2XE1 A;  3BRZ A;  4FRT A;  3T0S A;  4O3X B;  3POQ A;  5D5D A;  3WU2 O;  2W80 C;  5JDP A;  8PRN A;  4JCH A;  3JTY A;  4O4X A;  2ERV A;  4GCS A;  2R4L A;  2ZLD A;  3UAQ A;  5ADX K;  2XMX A;  4C69 X;  1OSM A;  5E79 O;  3A2S X;  3T20 A;  4UB8 O;  4FZN A;  1T1L A;  3AAA A;  4LSF A;  3VE1 A;  1MM5 A;  2YNK A;  2FGR A;  2Y2X A;  3AA6 A;  3HOE A;  3PRN A;  3PGR A;  4N75 A;  4PJ0 O;  4AYM C;  4KRA A;  4E1T A;  2R4P A;  1BH3 A;  5DL6 A;  4CTD A;  3NSG A;  3SY7 A;  2N2M A;  4AKR A;  2IWW A;  1YS5 A;  2F1T A;  3KVD D;  3PGU A;  3SY9 A;  1Q9F A;  3AAE B;  3TZG A;  4D64 A;  3AA1 B;  3JCU O;  2W81 C;  2X27 X;  5G26 A;  3POR A;  5FVN A;  2ODJ A;  4RJX A;  4BUM X;  5AFU K;  5B5E O;  1QJP A;  1HXU A;  4C4V A;  2F1C X;  1E54 A;  4N59 A;  5GV0 A;  3POU A;  4K3B A;  3O0E A;  3RBH A;  1H6S 1;  5EE2 A;  3T24 A;  4G75 A;  4AKR B;  1P4T A;  5B66 O;  2Y0K A;  3PGS A;  3AA7 B;  4AKM A;  5PRN A;  4AUI A;  4AYN A;  4C00 A;  7PRN A;  1QJ9 A;  1ZHT A;  4B61 A;  4F4B A;  3HOL A;  1GFQ A;  3DWO X;  2JQY A;  5GTI O;  1GFM A;  4O3Y A;  4AYI D;  1IZN B;  2J4U P;  2XE2 A;  4KR8 A;  2LFU A;  4FMS A;  1GFP A;  1PHO A;  2K0L A;  4RJW A;  2J1N A;  3SYS A;  3K19 A;  2KDY A;  1MPF A;  2KZ7 A;  3AA0 A;  4O49 A;  3UU2 A;  4U9C A;  3VY9 X;  4O3Z A;  4XNK A;  3SZD A;  4IL6 O;  3KZI O;  4FZL A;  1MM4 A;  2R4N A;  2MNH A;  4RLB A;  2Y0L A;  3FYX A;  4FZM A;  3SZV A;  3VZT X;  4AYD C;  2ZFG A;  3LK2 A;  5H2F O;  1OPF A;  3AAA B;  1HXT A;  1G90 A;  3A0H O;  5TIS O;  2KZ7 B;  3AA6 B;  4FQE A;  5DL8 A;  1Q9G A;  2M06 A;  2XE3 A;  3BRY A;  4FSP A;  3G7G A;  4PUX A;  5T5F A;  3VZU X;  2KXP A;  3C5O A;  5GTH O;  5G39 A;  3BS0 A;  2O4V A;  4LSE A;  3PF1 A;  3VE2 A;  3GP6 A;  2XTQ A;  2LHF A;  4C4V B;  2F1V A;  5KAI O;  3WI5 A;  3LK3 A;  1S5L O;  4LSI A;  2K4T A;  3POX A;  4D5U A;  4Z3T A;  3A0B O;  2R88 A;  3NJT A;  3VY8 X;  4FT6 A;  4FUV A;  3DZM A;  4E1S A;  2R8A A;  2AXT O;  4N74 A;  4D65 A;  2GE4 A;  2N2L A;  3SYB A;  3PQS A;  4AFK A;  3UPG A;  1BXW A;  1GFN A;  2WVP A;  4FSO A;  3LK3 B;  5G3A A;  3WI4 A;  2MHL A;  3DA4 A;  5ADX L;  4PR7 A;  4FOZ A;  4RLC A;  3AA0 B;  3V8U A;  4O4U A;  4GCQ A;  4XNL A;  6PRN A;  2WJQ A;  2JMM A;  4FES A;  4O3W A;  2XE5 A;  3PQU A;  2KC0 A;  3QRC A;  1PRN A;  3VZW X;  3LK4 1;  1ZHZ A;  3AAE A;  2M07 A;  3LK2 B;  4G76 A;  3AA1 A;  4GCP A;  1ORM A;  2PRN A;  4AZL A;  1ZHW A;  1ZHY A;  2XG6 A;  5AFU L;  2KXP B;  4RL9 A;  3DWN A;  4N58 A;  4QQ1 A;  5DL5 A;  4LSH A;  5KAF O;  1THQ A;  4GHB A;  5G38 A;  2YPV A;  3AA7 A;  2IWV A;  4FRX A;  2POR A;  2WJR A;  2XTR A;  2Y7S A;  3HW9 A;  2Y0H A;  4KR4 A;  4UB6 O;  5DL7 A;  3QRA A;  1GFO A;  4GF4 A;  1ZHX A;  1T16 A;  4AYE C;  1HXX A;  5IYU A;  1IZN A;  1QJ8 A; 
#chains in the Genus database with same CATH homology
 3HWB A;  2OMF A;  3LK4 2;  4JFB A;  2FGQ X;  3EMN X;  3DA3 A;  2QTK A;  1BT9 A;  2XE1 A;  4FRT A;  3T0S A;  5JDP A;  4O3X B;  3POQ A;  5D5D A;  2W80 C;  8PRN A;  4JCH A;  3JTY A;  4O4X A;  2ERV A;  4GCS A;  2ZLD A;  3UAQ A;  5ADX K;  2XMX A;  4C69 X;  1OSM A;  3A2S X;  3T20 A;  4FZN A;  3AAA A;  4LSF A;  3VE1 A;  1MM5 A;  2YNK A;  2FGR A;  2Y2X A;  3AA6 A;  3HOE A;  3PRN A;  4E1T A;  4AYM C;  4KRA A;  1BH3 A;  5DL6 A;  3NSG A;  3SY7 A;  2N2M A;  4AKR A;  1YS5 A;  2F1T A;  3KVD D;  3SY9 A;  1Q9F A;  3AAE B;  3TZG A;  4D64 A;  3AA1 B;  2W81 C;  2X27 X;  5G26 A;  3POR A;  5FVN A;  2ODJ A;  4RJX A;  4BUM X;  5AFU K;  1QJP A;  1HXU A;  1E54 A;  4N59 A;  5GV0 A;  3POU A;  3RBH A;  3O0E A;  4AKR B;  1H6S 1;  5EE2 A;  3T24 A;  4G75 A;  1P4T A;  2Y0K A;  3AA7 B;  4AKM A;  5PRN A;  4AUI A;  4AYN A;  7PRN A;  1QJ9 A;  1ZHT A;  4B61 A;  4F4B A;  3HOL A;  1GFQ A;  1GFM A;  4O3Y A;  4AYI D;  1IZN B;  2J4U P;  2XE2 A;  4KR8 A;  2LFU A;  4FMS A;  1GFP A;  1PHO A;  2K0L A;  4RJW A;  2J1N A;  3SYS A;  3K19 A;  2KDY A;  1MPF A;  2KZ7 A;  3AA0 A;  4O49 A;  3UU2 A;  4U9C A;  3VY9 X;  4O3Z A;  4XNK A;  3SZD A;  4FZL A;  1MM4 A;  4RLB A;  2MNH A;  3SZV A;  2Y0L A;  3FYX A;  4FZM A;  3VZT X;  4AYD C;  2ZFG A;  3LK2 A;  1OPF A;  3AAA B;  1HXT A;  1G90 A;  2KZ7 B;  3AA6 B;  5DL8 A;  1Q9G A;  2M06 A;  2XE3 A;  4FSP A;  4PUX A;  3G7G A;  5T5F A;  3VZU X;  2KXP A;  3C5O A;  2O4V A;  4LSE A;  3VE2 A;  3GP6 A;  2XTQ A;  2LHF A;  2F1V A;  3WI5 A;  3LK3 A;  4LSI A;  2K4T A;  3POX A;  4D5U A;  4Z3T A;  3VY8 X;  4FT6 A;  4FUV A;  4E1S A;  4D65 A;  2GE4 A;  2N2L A;  3SYB A;  3PQS A;  4AFK A;  3UPG A;  1BXW A;  1GFN A;  4FSO A;  3LK3 B;  3WI4 A;  2MHL A;  3DA4 A;  5ADX L;  4FOZ A;  4RLC A;  3AA0 B;  3V8U A;  4O4U A;  4GCQ A;  4XNL A;  6PRN A;  2JMM A;  4FES A;  4O3W A;  2XE5 A;  3PQU A;  2KC0 A;  3QRC A;  1PRN A;  3VZW X;  3LK4 1;  1ZHZ A;  3AAE A;  2M07 A;  3LK2 B;  4G76 A;  3AA1 A;  4GCP A;  1ORM A;  2PRN A;  4AZL A;  1ZHW A;  1ZHY A;  2XG6 A;  5AFU L;  2KXP B;  4RL9 A;  4N58 A;  4QQ1 A;  5DL5 A;  4LSH A;  1THQ A;  4GHB A;  2YPV A;  3AA7 A;  4FRX A;  2POR A;  2XTR A;  2Y7S A;  3HW9 A;  2Y0H A;  4KR4 A;  5DL7 A;  3QRA A;  1GFO A;  4GF4 A;  1ZHX A;  4AYE C;  1HXX A;  5IYU A;  1IZN A;  1QJ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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