3A2SX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with sucrose
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein II
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 83
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2009-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3a2sX00
3UU2A 1GFMA 4FSOA 4FSPA 2ZFGA 4D5UA 4KR8A 3WI4A 3UPGA 4FRXA 1PRNA 1E54A 3VY9X 3PRNA 3SZDA 4FOZA 2J1NA 3SZVA 2QTKA 6PRNA 1HXUA 2ODJA 3A2SX 3SY9A 5DL7A 4FT6A 4JFBA 3JTYA 1MPFA 1BT9A 4FRTA 3POUA 1HXXA 2XE1A 3PORA 4LSHA 4BUMX 4RJXA 4AUIA 3K19A 3O0EA 4GCPA 5DL5A 1BH3A 3VZWX 3T24A 3POQA 5FVNA 2O4VA 3WI5A 2Y0HA 3HW9A 2OMFA 2XE3A 5DL8A 2Y2XA 3VZUX 2PRNA 1HXTA 2XG6A 2Y0KA 2ZLDA 4LSFA 2FGRA 1PHOA 1OPFA 3SYBA 3NSGA 5PRNA 8PRNA 1GFQA 2FGQX 4D64A 1GFOA 5DL6A 4RJWA 3VY8X 4D65A 3POXA 4KRAA 4GCQA 1GFNA 2K4TA 5JDPA 2Y0LA 3EMNX 4FMSA 4KR4A 3SY7A 7PRNA 3SYSA 3T20A 2XE2A 4GCSA 4C69X 1GFPA 4LSIA 4LSEA 3T0SA 2PORA 3VZTX 2J4UP 2XE5A 1OSMA 3FYXA 1H6S1 3HWBA
chains in the Genus database with same CATH superfamily
3LK2B 3UU2A 4O3WA 4XNLA 2MNHA 1GFMA 4AYMC 4FSOA 4UB6O 4FSPA 2R4OA 2YPVA 2ZFGA 3AAEA 3LK41 4C4VA 5TISO 2LHFA 4D5UA 3DA3A 1Q9FA 4KR8A 4G75A 1T1LA 5KAIO 8PRNA 3WI4A 3UPGA 4O3ZA 4FRXA 4FQEA 3PGRA 5G39A 4AYDC 1PRNA 1E54A 3TZGA 2F1CX 5B5EO 2KXPB 4IL6O 4N75A 2M07A 3VY9X 4D64A 3PRNA 3SZDA 2WVPA 1S5LO 5E79O 4FOZA 3VE2A 2J1NA 4FZMA 4E1SA 3SZVA 2QTKA 3QRCA 1HXUA 2KC0A 4AKRA 2ODJA 4B61A 4FESA 4AFKA 2R4NA 5EE2A 2X9KA 3A2SX 3SY9A 4U9CA 3A0HO 3C5OA 1QJPA 5DL7A 4O4XA 4FT6A 3JCUO 4JFBA 3AA7A 3JTYA 1MPFA 1BT9A 3AA0A 4FRTA 4N74A 3PF1A 3POUA 3LK3B 1HXXA 1THQA 2R4LA 3KVDD 2XE1A 3PGUA 4JCHA 3AA6A 4PUXA 2F1VA 2N2LA 3AAAA 3PORA 4LSHA 5GV0A 2ERVA 4PJ0O 4BUMX 4RJXA 4AUIA 3K19A 3O0EA 3LK42 4GCPA 4RLCA 3AA1A 3DWOX 3KZIO 2R4PA 4K3BA 5DL5A 1BH3A 1ZHTA 3VZWX 3T24A 1IZNA 3POQA 5G38A 3RBHA 5FVNA 2O4VA 5ADXK 3WI5A 3AAEB 2Y0HA 4O3YA 3HW9A 4PR7A 4CTDA 2OMFA 2XE3A 4C4VB 5AFUK 1QJ8A 5AFUL 2Y2XA 5DL8A 5ADXL 5GTHO 4O3XB 3VZUX 3PQSA 3NJTA 4AYID 4UB8O 5IYUA 3DA4A 2PRNA 3DWNA 4AYNA 2KZ7B 2N2MA 1HXTA 2XG6A 3V8UA 2Y0KA 2ZLDA 3LK2A 4G76A 4LSFA 3G7GA 2FGRA 4RLBA 3UAQA 1PHOA 3GP6A 5D5DA 4E1TA 2YNKA 4AKRB 3QRAA 2F1TA 4F4BA 1ZHZA 1OPFA 5G26A 6PRNA 5H2FO 1QJ9A 2Y7SA 4RL9A 1G90A 3BRYA 2R89A 3SYBA 1ZHWA 3NSGA 2XTQA 5PRNA 3AA0B 2MHLA 1GFQA 4GF4A 2FGQX 1MM4A 2KXPA 4K3CA 5KAFO 1GFOA 2AXTO 4N58A 2R8AA 5T5FA 4AYEC 5DL6A 4AZLA 4RJWA 2M06A 1T16A 2KDYA 3HOEA 5GTIO 3VY8X 3POXA 3AA6B 3WU2O 4KRAA 2JMMA 4D65A 2IWWA 4O49A 2K0LA 3AAAB 4GCQA 4FZNA 1GFNA 2WJQA 2K4TA 4FUVA 5JDPA 2Y0LA 2X27X 2GE4A 3EMNX 4FMSA 2LFUA 1P4TA 2XTRA 4KR4A 3BRZA 2JQYA 3HOLA 3BS0A 3SY7A 7PRNA 3AA1B 4Z3TA 3SYSA 3T20A 1MM5A 2KZ7A 1IZNB 2XMXA 5G3AA 2XE2A 1YS5A 2R88A 4QQ1A 1ORMA 2IWVA 2W81C 3LK3A 3PQUA 3PGSA 4GCSA 4C69X 1GFPA 4AKMA 4LSIA 1Q9GA 1ZHXA 4FZLA 4XNKA 5B66O 1ZHYA 3A0BO 4C00A 4O4UA 4LSEA 3T0SA 2W80C 1BXWA 2PORA 3AA7B 4N59A 3VE1A 3VZTX 4GHBA 2J4UP 2XE5A 1OSMA 2WJRA 3DZMA 3FYXA 1H6S1 3HWBA
chains in the Genus database with same CATH topology
3LK2B 3UU2A 4O3WA 4XNLA 2MNHA 1GFMA 4AYMC 4FSOA 4FSPA 2YPVA 2ZFGA 3AAEA 3LK41 2LHFA 4D5UA 3DA3A 1Q9FA 4KR8A 4G75A 3WI4A 3UPGA 4O3ZA 4FRXA 4AYDC 1PRNA 1E54A 3TZGA 2KXPB 3VY9X 2M07A 3PRNA 3SZDA 3VE2A 4FOZA 2J1NA 4FZMA 4E1SA 3SZVA 2QTKA 3QRCA 1HXUA 2KC0A 4AKRA 2ODJA 4B61A 4FESA 4AFKA 5EE2A 5ADXL 3A2SX 3SY9A 4U9CA 3C5OA 1QJPA 5DL7A 4O4XA 4FT6A 4JFBA 3AA7A 3JTYA 1MPFA 1BT9A 3AA0A 4FRTA 3POUA 3LK3B 1HXXA 1THQA 3KVDD 2XE1A 4JCHA 3AA6A 4PUXA 2F1VA 2N2LA 3AAAA 3PORA 4LSHA 5GV0A 2ERVA 4BUMX 4RJXA 4AUIA 3K19A 3O0EA 3LK42 4GCPA 4RLCA 3AA1A 5DL5A 1BH3A 1ZHTA 3VZWX 3T24A 1IZNA 3POQA 3RBHA 4F4BA 5FVNA 2O4VA 5ADXK 3WI5A 3AAEB 2Y0HA 4O3YA 3HW9A 2OMFA 2XE3A 5AFUK 1QJ8A 5AFUL 2Y2XA 5DL8A 4O3XB 3VZUX 3PQSA 4AYID 5IYUA 3DA4A 2PRNA 4AYNA 2KZ7B 2N2MA 1HXTA 2XG6A 3V8UA 2Y0KA 2ZLDA 3LK2A 4G76A 4LSFA 3G7GA 2FGRA 4RLBA 3UAQA 1PHOA 3GP6A 5D5DA 4E1TA 2YNKA 4AKRB 3QRAA 2F1TA 1ZHZA 1OPFA 5G26A 6PRNA 1QJ9A 2Y7SA 4RL9A 1G90A 3SYBA 1ZHWA 3NSGA 2XTQA 5PRNA 3AA0B 2MHLA 1GFQA 4GF4A 2FGQX 1MM4A 2KXPA 4D64A 8PRNA 1GFOA 4N58A 4AZLA 5T5FA 4AYEC 5DL6A 4RJWA 2M06A 3HOEA 2KDYA 3VY8X 4D65A 3POXA 3AA6B 4KRAA 2JMMA 4O49A 2K0LA 3AAAB 4GCQA 4FZNA 1GFNA 2K4TA 4FUVA 5JDPA 2Y0LA 2X27X 2GE4A 3EMNX 4FMSA 2LFUA 1P4TA 2XTRA 4KR4A 3HOLA 3SY7A 7PRNA 3AA1B 4Z3TA 3SYSA 3T20A 1MM5A 2KZ7A 1IZNB 2XMXA 2XE2A 1YS5A 4QQ1A 1ORMA 2W81C 3LK3A 3PQUA 4GCSA 4C69X 1GFPA 4AKMA 4LSIA 1Q9GA 1ZHXA 4FZLA 4XNKA 1ZHYA 4O4UA 4LSEA 3T0SA 2W80C 1BXWA 2PORA 3AA7B 4N59A 3VE1A 3VZTX 4GHBA 2J4UP 2XE5A 1OSMA 3FYXA 1H6S1 3HWBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU2 A;  1GFM A;  4FSO A;  4FSP A;  2ZFG A;  4D5U A;  4KR8 A;  3WI4 A;  3UPG A;  4FRX A;  1PRN A;  1E54 A;  3VY9 X;  3PRN A;  3SZD A;  4FOZ A;  2J1N A;  3SZV A;  2QTK A;  6PRN A;  1HXU A;  2ODJ A;  3A2S X;  3SY9 A;  5DL7 A;  4FT6 A;  4JFB A;  3JTY A;  1MPF A;  1BT9 A;  4FRT A;  3POU A;  1HXX A;  2XE1 A;  3POR A;  4LSH A;  4BUM X;  4RJX A;  4AUI A;  3K19 A;  3O0E A;  4GCP A;  5DL5 A;  1BH3 A;  3VZW X;  3T24 A;  3POQ A;  5FVN A;  2O4V A;  3WI5 A;  2Y0H A;  3HW9 A;  2OMF A;  2XE3 A;  5DL8 A;  2Y2X A;  3VZU X;  2PRN A;  1HXT A;  2XG6 A;  2Y0K A;  2ZLD A;  4LSF A;  2FGR A;  1PHO A;  1OPF A;  3SYB A;  3NSG A;  5PRN A;  8PRN A;  1GFQ A;  2FGQ X;  4D64 A;  1GFO A;  5DL6 A;  4RJW A;  3VY8 X;  4D65 A;  3POX A;  4KRA A;  4GCQ A;  1GFN A;  2K4T A;  5JDP A;  2Y0L A;  3EMN X;  4FMS A;  4KR4 A;  3SY7 A;  7PRN A;  3SYS A;  3T20 A;  2XE2 A;  4GCS A;  4C69 X;  1GFP A;  4LSI A;  4LSE A;  3T0S A;  2POR A;  3VZT X;  2J4U P;  2XE5 A;  1OSM A;  3FYX A;  1H6S 1;  3HWB A; 
#chains in the Genus database with same CATH topology
 3LK2 B;  3UU2 A;  4O3W A;  4XNL A;  2MNH A;  1GFM A;  4AYM C;  4FSO A;  4UB6 O;  4FSP A;  2R4O A;  2YPV A;  2ZFG A;  3AAE A;  3LK4 1;  4C4V A;  5TIS O;  2LHF A;  4D5U A;  3DA3 A;  1Q9F A;  4KR8 A;  4G75 A;  1T1L A;  5KAI O;  8PRN A;  3WI4 A;  3UPG A;  4O3Z A;  4FRX A;  4FQE A;  3PGR A;  5G39 A;  4AYD C;  1PRN A;  1E54 A;  3TZG A;  2F1C X;  5B5E O;  2KXP B;  4IL6 O;  4N75 A;  2M07 A;  3VY9 X;  4D64 A;  3PRN A;  3SZD A;  2WVP A;  1S5L O;  5E79 O;  4FOZ A;  3VE2 A;  2J1N A;  4FZM A;  4E1S A;  3SZV A;  2QTK A;  3QRC A;  1HXU A;  2KC0 A;  4AKR A;  2ODJ A;  4B61 A;  4FES A;  4AFK A;  2R4N A;  5EE2 A;  2X9K A;  3A2S X;  3SY9 A;  4U9C A;  3A0H O;  3C5O A;  1QJP A;  5DL7 A;  4O4X A;  4FT6 A;  3JCU O;  4JFB A;  3AA7 A;  3JTY A;  1MPF A;  1BT9 A;  3AA0 A;  4FRT A;  4N74 A;  3PF1 A;  3POU A;  3LK3 B;  1HXX A;  1THQ A;  2R4L A;  3KVD D;  2XE1 A;  3PGU A;  4JCH A;  3AA6 A;  4PUX A;  2F1V A;  2N2L A;  3AAA A;  3POR A;  4LSH A;  5GV0 A;  2ERV A;  4PJ0 O;  4BUM X;  4RJX A;  4AUI A;  3K19 A;  3O0E A;  3LK4 2;  4GCP A;  4RLC A;  3AA1 A;  3DWO X;  3KZI O;  2R4P A;  4K3B A;  5DL5 A;  1BH3 A;  1ZHT A;  3VZW X;  3T24 A;  1IZN A;  3POQ A;  5G38 A;  3RBH A;  5FVN A;  2O4V A;  5ADX K;  3WI5 A;  3AAE B;  2Y0H A;  4O3Y A;  3HW9 A;  4PR7 A;  4CTD A;  2OMF A;  2XE3 A;  4C4V B;  5AFU K;  1QJ8 A;  5AFU L;  2Y2X A;  5DL8 A;  5ADX L;  5GTH O;  4O3X B;  3VZU X;  3PQS A;  3NJT A;  4AYI D;  4UB8 O;  5IYU A;  3DA4 A;  2PRN A;  3DWN A;  4AYN A;  2KZ7 B;  2N2M A;  1HXT A;  2XG6 A;  3V8U A;  2Y0K A;  2ZLD A;  3LK2 A;  4G76 A;  4LSF A;  3G7G A;  2FGR A;  4RLB A;  3UAQ A;  1PHO A;  3GP6 A;  5D5D A;  4E1T A;  2YNK A;  4AKR B;  3QRA A;  2F1T A;  4F4B A;  1ZHZ A;  1OPF A;  5G26 A;  6PRN A;  5H2F O;  1QJ9 A;  2Y7S A;  4RL9 A;  1G90 A;  3BRY A;  2R89 A;  3SYB A;  1ZHW A;  3NSG A;  2XTQ A;  5PRN A;  3AA0 B;  2MHL A;  1GFQ A;  4GF4 A;  2FGQ X;  1MM4 A;  2KXP A;  4K3C A;  5KAF O;  1GFO A;  2AXT O;  4N58 A;  2R8A A;  5T5F A;  4AYE C;  5DL6 A;  4AZL A;  4RJW A;  2M06 A;  1T16 A;  2KDY A;  3HOE A;  5GTI O;  3VY8 X;  3POX A;  3AA6 B;  3WU2 O;  4KRA A;  2JMM A;  4D65 A;  2IWW A;  4O49 A;  2K0L A;  3AAA B;  4GCQ A;  4FZN A;  1GFN A;  2WJQ A;  2K4T A;  4FUV A;  5JDP A;  2Y0L A;  2X27 X;  2GE4 A;  3EMN X;  4FMS A;  2LFU A;  1P4T A;  2XTR A;  4KR4 A;  3BRZ A;  2JQY A;  3HOL A;  3BS0 A;  3SY7 A;  7PRN A;  3AA1 B;  4Z3T A;  3SYS A;  3T20 A;  1MM5 A;  2KZ7 A;  1IZN B;  2XMX A;  5G3A A;  2XE2 A;  1YS5 A;  2R88 A;  4QQ1 A;  1ORM A;  2IWV A;  2W81 C;  3LK3 A;  3PQU A;  3PGS A;  4GCS A;  4C69 X;  1GFP A;  4AKM A;  4LSI A;  1Q9G A;  1ZHX A;  4FZL A;  4XNK A;  5B66 O;  1ZHY A;  3A0B O;  4C00 A;  4O4U A;  4LSE A;  3T0S A;  2W80 C;  1BXW A;  2POR A;  3AA7 B;  4N59 A;  3VE1 A;  3VZT X;  4GHB A;  2J4U P;  2XE5 A;  1OSM A;  2WJR A;  3DZM A;  3FYX A;  1H6S 1;  3HWB A; 
#chains in the Genus database with same CATH homology
 3LK2 B;  3UU2 A;  4O3W A;  4XNL A;  2MNH A;  1GFM A;  4AYM C;  4FSO A;  4FSP A;  2YPV A;  2ZFG A;  3AAE A;  3LK4 1;  2LHF A;  4D5U A;  3DA3 A;  1Q9F A;  4KR8 A;  4G75 A;  3WI4 A;  3UPG A;  4O3Z A;  4FRX A;  4AYD C;  1PRN A;  1E54 A;  3TZG A;  2KXP B;  3VY9 X;  2M07 A;  3PRN A;  3SZD A;  3VE2 A;  4FOZ A;  2J1N A;  4FZM A;  4E1S A;  3SZV A;  2QTK A;  3QRC A;  1HXU A;  2KC0 A;  4AKR A;  2ODJ A;  4B61 A;  4FES A;  4AFK A;  5EE2 A;  5ADX L;  3A2S X;  3SY9 A;  4U9C A;  3C5O A;  1QJP A;  5DL7 A;  4O4X A;  4FT6 A;  4JFB A;  3AA7 A;  3JTY A;  1MPF A;  1BT9 A;  3AA0 A;  4FRT A;  3POU A;  3LK3 B;  1HXX A;  1THQ A;  3KVD D;  2XE1 A;  4JCH A;  3AA6 A;  4PUX A;  2F1V A;  2N2L A;  3AAA A;  3POR A;  4LSH A;  5GV0 A;  2ERV A;  4BUM X;  4RJX A;  4AUI A;  3K19 A;  3O0E A;  3LK4 2;  4GCP A;  4RLC A;  3AA1 A;  5DL5 A;  1BH3 A;  1ZHT A;  3VZW X;  3T24 A;  1IZN A;  3POQ A;  3RBH A;  4F4B A;  5FVN A;  2O4V A;  5ADX K;  3WI5 A;  3AAE B;  2Y0H A;  4O3Y A;  3HW9 A;  2OMF A;  2XE3 A;  5AFU K;  1QJ8 A;  5AFU L;  2Y2X A;  5DL8 A;  4O3X B;  3VZU X;  3PQS A;  4AYI D;  5IYU A;  3DA4 A;  2PRN A;  4AYN A;  2KZ7 B;  2N2M A;  1HXT A;  2XG6 A;  3V8U A;  2Y0K A;  2ZLD A;  3LK2 A;  4G76 A;  4LSF A;  3G7G A;  2FGR A;  4RLB A;  3UAQ A;  1PHO A;  3GP6 A;  5D5D A;  4E1T A;  2YNK A;  4AKR B;  3QRA A;  2F1T A;  1ZHZ A;  1OPF A;  5G26 A;  6PRN A;  1QJ9 A;  2Y7S A;  4RL9 A;  1G90 A;  3SYB A;  1ZHW A;  3NSG A;  2XTQ A;  5PRN A;  3AA0 B;  2MHL A;  1GFQ A;  4GF4 A;  2FGQ X;  1MM4 A;  2KXP A;  4D64 A;  8PRN A;  1GFO A;  4N58 A;  4AZL A;  5T5F A;  4AYE C;  5DL6 A;  4RJW A;  2M06 A;  3HOE A;  2KDY A;  3VY8 X;  4D65 A;  3POX A;  3AA6 B;  4KRA A;  2JMM A;  4O49 A;  2K0L A;  3AAA B;  4GCQ A;  4FZN A;  1GFN A;  2K4T A;  4FUV A;  5JDP A;  2Y0L A;  2X27 X;  2GE4 A;  3EMN X;  4FMS A;  2LFU A;  1P4T A;  2XTR A;  4KR4 A;  3HOL A;  3SY7 A;  7PRN A;  3AA1 B;  4Z3T A;  3SYS A;  3T20 A;  1MM5 A;  2KZ7 A;  1IZN B;  2XMX A;  2XE2 A;  1YS5 A;  4QQ1 A;  1ORM A;  2W81 C;  3LK3 A;  3PQU A;  4GCS A;  4C69 X;  1GFP A;  4AKM A;  4LSI A;  1Q9G A;  1ZHX A;  4FZL A;  4XNK A;  1ZHY A;  4O4U A;  4LSE A;  3T0S A;  2W80 C;  1BXW A;  2POR A;  3AA7 B;  4N59 A;  3VE1 A;  3VZT X;  4GHB A;  2J4U P;  2XE5 A;  1OSM A;  3FYX A;  1H6S 1;  3HWB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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