3NSGA

Crystal structure of ompf, an outer membrane protein from salmonella typhi
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
341
structure length
341
Chain Sequence
MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Asymmetric pore occupancy in crystal structure of OmpF porin from Salmonella typhi
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 66
structure length 341
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3nsgA00
1E54A 2ODJA 3WI5A 4GCPA 3SZVA 3POUA 2O4VA 2Y0LA 2ZFGA 2FGRA 5PRNA 1GFQA 3FYXA 3SZDA 4AUIA 4GCQA 6PRNA 5FVNA 3VZWX 1GFPA 1HXTA 1OSMA 4C69X 1HXUA 3HW9A 3POXA 3UU2A 2QTKA 1BT9A 2Y0HA 2PRNA 3JTYA 2K4TA 3POQA 1H6S1 1BH3A 3O0EA 4FRTA 3T24A 3HWBA 1GFNA 5JDPA 2XG6A 2ZLDA 4FMSA 3A2SX 3T20A 1GFOA 3PRNA 5DL7A 4D65A 1OPFA 8PRNA 4LSHA 1PRNA 5DL6A 4FRXA 4LSIA 5DL5A 3NSGA 3VY9X 3UPGA 2J1NA 1GFMA 4LSEA 2XE5A 2PORA 3VY8X 3T0SA 2Y2XA 3VZTX 4BUMX 4RJWA 4KR8A 7PRNA 4FT6A 2Y0KA 4GCSA 4KR4A 1PHOA 2FGQX 3SYSA 3SY9A 3EMNX 3SY7A 4LSFA 1HXXA 4FSOA 2XE2A 3SYBA 4FSPA 2OMFA 2XE1A 3PORA 4KRAA 5DL8A 2XE3A 3VZUX 1MPFA 4FOZA 4D5UA 2J4UP 3WI4A 4RJXA 4D64A 3K19A 4JFBA
chains in the Genus database with same CATH superfamily
2KXPA 2ERVA 1IZNA 4N74A 3VE2A 5ADXK 4O49A 1BXWA 1E54A 2ODJA 3AA0B 4FESA 4GCPA 4PR7A 2MNHA 3WI5A 4AYEC 4B61A 3SZVA 3DA3A 4O4UA 1QJ9A 4D64A 2W81C 3POUA 2O4VA 4C00A 2Y0LA 2ZFGA 3AA7B 1THQA 2FGRA 1ZHTA 5G26A 5PRNA 1ZHZA 4N58A 1GFQA 3FYXA 3SZDA 4AUIA 2JMMA 4AYMC 4GCQA 2JQYA 6PRNA 5FVNA 5KAFO 3AAAB 3VZWX 1GFPA 1YS5A 1ZHWA 2R89A 1HXTA 1OSMA 5KAIO 5DL5A 4JFBA 1MM4A 4AYNA 4C69X 1HXUA 3HW9A 2XTQA 3UAQA 3LK3B 3POXA 3UU2A 2QTKA 1BT9A 3WU2O 4AFKA 2Y0HA 2R88A 2PRNA 3JTYA 2X27X 3VE1A 3PGUA 5ADXL 2K4TA 3AAEA 2N2MA 2M06A 3POQA 3AA6B 3G7GA 4UB8O 3AA1A 4XNLA 5E79O 5G38A 5TISO 4C4VB 1H6S1 3C5OA 1BH3A 2KZ7A 2F1TA 1G90A 3O0EA 4FRTA 3T24A 3HWBA 4K3CA 1P4TA 1GFNA 4AKRB 2W80C 5EE2A 2XG6A 3PQUA 2IWVA 5JDPA 1S5LO 2R4NA 2ZLDA 5B66O 4FMSA 3A2SX 5H2FO 3PGSA 4XNKA 3HOLA 1GFOA 4PJ0O 3T20A 3PRNA 4AKMA 3BS0A 3LK41 4E1TA 1ORMA 5DL7A 3LK2B 4D65A 1OPFA 2KXPB 1IZNB 8PRNA 4LSHA 1PRNA 4RLCA 3A0BO 4RLBA 4U9CA 1Q9GA 2LFUA 4FUVA 5DL6A 3UPGA 5D5DA 4G75A 4FRXA 4AZLA 4LSIA 2K0LA 2X9KA 3NSGA 3AA0A 4FZLA 2J1NA 1GFMA 4N59A 4O3YA 2KDYA 3DWNA 4PUXA 5GTHO 2IWWA 1QJPA 4LSEA 3JCUO 3V8UA 3PGRA 2XE5A 2YNKA 2PORA 5T5FA 2XTRA 3T0SA 3VY8X 4E1SA 2Y7SA 2Y2XA 4QQ1A 3VZTX 3AA7A 4AYDC 4BUMX 4O3ZA 5GV0A 3BRZA 4RJWA 4KR8A 4UB6O 4O3XB 2XMXA 3KZIO 4FT6A 2Y0KA 4GCSA 3LK42 4N75A 4O4XA 4CTDA 3BRYA 3A0HO 1PHOA 4KR4A 4FZMA 1T16A 2WVPA 3KVDD 2YPVA 3GP6A 2FGQX 3AAAA 3SYSA 4F4BA 2M07A 2F1CX 2MHLA 5GTIO 2GE4A 3PF1A 3SY9A 4FZNA 3EMNX 1QJ8A 3SY7A 3DZMA 3LK3A 4LSFA 2KC0A 4O3WA 2R4OA 3HOEA 1MM5A 3NJTA 1Q9FA 1ZHYA 1HXXA 4FSOA 3RBHA 3TZGA 4RL9A 2N2LA 2R8AA 2WJQA 3AAEB 4GF4A 3VY9X 5B5EO 1T1LA 7PRNA 3AA1B 4G76A 5IYUA 2XE2A 3AA6A 4K3BA 4IL6O 4GHBA 2KZ7B 3SYBA 4C4VA 4FSPA 2OMFA 2XE1A 3DWOX 3PORA 3PQSA 4KRAA 5DL8A 5G39A 2AXTO 2LHFA 5AFUK 4AKRA 2XE3A 3VZUX 3QRAA 5AFUL 1MPFA 4FOZA 4D5UA 4AYID 4JCHA 2WJRA 2J4UP 1ZHXA 3WI4A 2R4LA 5G3AA 2R4PA 4Z3TA 4RJXA 3DA4A 3QRCA 4FQEA 3K19A 3LK2A 2F1VA
chains in the Genus database with same CATH topology
2KXPA 2ERVA 1IZNA 3VE2A 5ADXK 4O49A 1BXWA 1E54A 2ODJA 3AA0B 4FESA 4GCPA 3WI5A 2MNHA 4AYEC 4B61A 3SZVA 3DA3A 4O4UA 1QJ9A 2W81C 3POUA 2O4VA 2Y0LA 2ZFGA 3AA7B 1THQA 2FGRA 1ZHTA 5G26A 5PRNA 1ZHZA 4N58A 1GFQA 3FYXA 3SZDA 4AUIA 2JMMA 4AYMC 4GCQA 6PRNA 5FVNA 3AAAB 3VZWX 1GFPA 1YS5A 1ZHWA 4AYNA 1HXTA 1OSMA 4JFBA 1MM4A 4C69X 1HXUA 3HW9A 2XTQA 3UAQA 3LK3B 3POXA 3UU2A 2QTKA 1BT9A 4AFKA 2Y0HA 2PRNA 3JTYA 2X27X 3VE1A 5ADXL 2K4TA 3AAEA 2N2MA 2M06A 3POQA 3AA6B 3G7GA 4XNLA 3AA1A 1H6S1 3C5OA 1BH3A 2KZ7A 2F1TA 1G90A 3O0EA 4FRTA 3T24A 3HWBA 4AKRB 1P4TA 1GFNA 2W80C 5EE2A 2XG6A 3PQUA 5JDPA 2ZLDA 4FMSA 3A2SX 4XNKA 3HOLA 1GFOA 3T20A 3PRNA 4AKMA 3LK41 4E1TA 1ORMA 5DL7A 3LK2B 4D65A 1OPFA 2KXPB 1IZNB 8PRNA 4LSHA 1PRNA 4RLCA 4RLBA 4U9CA 1Q9GA 2LFUA 4FUVA 5DL6A 3UPGA 5D5DA 4G75A 4FRXA 4AZLA 4LSIA 2K0LA 3NSGA 4FZLA 3AA0A 5DL5A 2J1NA 1GFMA 4N59A 4O3YA 2KDYA 4PUXA 1QJPA 4LSEA 3V8UA 2XE5A 2YNKA 2PORA 5T5FA 2XTRA 3T0SA 3VY8X 4E1SA 2Y7SA 2Y2XA 4QQ1A 3VZTX 3AA7A 4AYDC 4BUMX 4O3ZA 5GV0A 4RJWA 4KR8A 7PRNA 4O3XB 2XMXA 4FT6A 2Y0KA 4GCSA 3LK42 4O4XA 4KR4A 1PHOA 4FZMA 3KVDD 2YPVA 3GP6A 2FGQX 3AAAA 3SYSA 4F4BA 2M07A 2MHLA 3SY9A 2GE4A 4FZNA 3EMNX 1QJ8A 3SY7A 3LK3A 4LSFA 2KC0A 4O3WA 3HOEA 1MM5A 1Q9FA 1ZHYA 1HXXA 4FSOA 3RBHA 3TZGA 4RL9A 2N2LA 4GF4A 3AAEB 3VY9X 3AA1B 4G76A 5IYUA 2XE2A 3AA6A 4GHBA 2KZ7B 3SYBA 4FSPA 2OMFA 2XE1A 3PORA 3PQSA 4KRAA 5DL8A 2LHFA 5AFUK 4AKRA 2XE3A 3VZUX 3QRAA 5AFUL 1MPFA 4FOZA 4D5UA 4AYID 4JCHA 2J4UP 1ZHXA 3WI4A 4Z3TA 4RJXA 3DA4A 3QRCA 4D64A 3K19A 3LK2A 2F1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E54 A;  2ODJ A;  3WI5 A;  4GCP A;  3SZV A;  3POU A;  2O4V A;  2Y0L A;  2ZFG A;  2FGR A;  5PRN A;  1GFQ A;  3FYX A;  3SZD A;  4AUI A;  4GCQ A;  6PRN A;  5FVN A;  3VZW X;  1GFP A;  1HXT A;  1OSM A;  4C69 X;  1HXU A;  3HW9 A;  3POX A;  3UU2 A;  2QTK A;  1BT9 A;  2Y0H A;  2PRN A;  3JTY A;  2K4T A;  3POQ A;  1H6S 1;  1BH3 A;  3O0E A;  4FRT A;  3T24 A;  3HWB A;  1GFN A;  5JDP A;  2XG6 A;  2ZLD A;  4FMS A;  3A2S X;  3T20 A;  1GFO A;  3PRN A;  5DL7 A;  4D65 A;  1OPF A;  8PRN A;  4LSH A;  1PRN A;  5DL6 A;  4FRX A;  4LSI A;  5DL5 A;  3NSG A;  3VY9 X;  3UPG A;  2J1N A;  1GFM A;  4LSE A;  2XE5 A;  2POR A;  3VY8 X;  3T0S A;  2Y2X A;  3VZT X;  4BUM X;  4RJW A;  4KR8 A;  7PRN A;  4FT6 A;  2Y0K A;  4GCS A;  4KR4 A;  1PHO A;  2FGQ X;  3SYS A;  3SY9 A;  3EMN X;  3SY7 A;  4LSF A;  1HXX A;  4FSO A;  2XE2 A;  3SYB A;  4FSP A;  2OMF A;  2XE1 A;  3POR A;  4KRA A;  5DL8 A;  2XE3 A;  3VZU X;  1MPF A;  4FOZ A;  4D5U A;  2J4U P;  3WI4 A;  4RJX A;  4D64 A;  3K19 A;  4JFB A; 
#chains in the Genus database with same CATH topology
 2KXP A;  2ERV A;  1IZN A;  4N74 A;  3VE2 A;  5ADX K;  4O49 A;  1BXW A;  1E54 A;  2ODJ A;  3AA0 B;  4FES A;  4GCP A;  4PR7 A;  2MNH A;  3WI5 A;  4AYE C;  4B61 A;  3SZV A;  3DA3 A;  4O4U A;  1QJ9 A;  4D64 A;  2W81 C;  3POU A;  2O4V A;  4C00 A;  2Y0L A;  2ZFG A;  3AA7 B;  1THQ A;  2FGR A;  1ZHT A;  5G26 A;  5PRN A;  1ZHZ A;  4N58 A;  1GFQ A;  3FYX A;  3SZD A;  4AUI A;  2JMM A;  4AYM C;  4GCQ A;  2JQY A;  6PRN A;  5FVN A;  5KAF O;  3AAA B;  3VZW X;  1GFP A;  1YS5 A;  1ZHW A;  2R89 A;  1HXT A;  1OSM A;  5KAI O;  5DL5 A;  4JFB A;  1MM4 A;  4AYN A;  4C69 X;  1HXU A;  3HW9 A;  2XTQ A;  3UAQ A;  3LK3 B;  3POX A;  3UU2 A;  2QTK A;  1BT9 A;  3WU2 O;  4AFK A;  2Y0H A;  2R88 A;  2PRN A;  3JTY A;  2X27 X;  3VE1 A;  3PGU A;  5ADX L;  2K4T A;  3AAE A;  2N2M A;  2M06 A;  3POQ A;  3AA6 B;  3G7G A;  4UB8 O;  3AA1 A;  4XNL A;  5E79 O;  5G38 A;  5TIS O;  4C4V B;  1H6S 1;  3C5O A;  1BH3 A;  2KZ7 A;  2F1T A;  1G90 A;  3O0E A;  4FRT A;  3T24 A;  3HWB A;  4K3C A;  1P4T A;  1GFN A;  4AKR B;  2W80 C;  5EE2 A;  2XG6 A;  3PQU A;  2IWV A;  5JDP A;  1S5L O;  2R4N A;  2ZLD A;  5B66 O;  4FMS A;  3A2S X;  5H2F O;  3PGS A;  4XNK A;  3HOL A;  1GFO A;  4PJ0 O;  3T20 A;  3PRN A;  4AKM A;  3BS0 A;  3LK4 1;  4E1T A;  1ORM A;  5DL7 A;  3LK2 B;  4D65 A;  1OPF A;  2KXP B;  1IZN B;  8PRN A;  4LSH A;  1PRN A;  4RLC A;  3A0B O;  4RLB A;  4U9C A;  1Q9G A;  2LFU A;  4FUV A;  5DL6 A;  3UPG A;  5D5D A;  4G75 A;  4FRX A;  4AZL A;  4LSI A;  2K0L A;  2X9K A;  3NSG A;  3AA0 A;  4FZL A;  2J1N A;  1GFM A;  4N59 A;  4O3Y A;  2KDY A;  3DWN A;  4PUX A;  5GTH O;  2IWW A;  1QJP A;  4LSE A;  3JCU O;  3V8U A;  3PGR A;  2XE5 A;  2YNK A;  2POR A;  5T5F A;  2XTR A;  3T0S A;  3VY8 X;  4E1S A;  2Y7S A;  2Y2X A;  4QQ1 A;  3VZT X;  3AA7 A;  4AYD C;  4BUM X;  4O3Z A;  5GV0 A;  3BRZ A;  4RJW A;  4KR8 A;  4UB6 O;  4O3X B;  2XMX A;  3KZI O;  4FT6 A;  2Y0K A;  4GCS A;  3LK4 2;  4N75 A;  4O4X A;  4CTD A;  3BRY A;  3A0H O;  1PHO A;  4KR4 A;  4FZM A;  1T16 A;  2WVP A;  3KVD D;  2YPV A;  3GP6 A;  2FGQ X;  3AAA A;  3SYS A;  4F4B A;  2M07 A;  2F1C X;  2MHL A;  5GTI O;  2GE4 A;  3PF1 A;  3SY9 A;  4FZN A;  3EMN X;  1QJ8 A;  3SY7 A;  3DZM A;  3LK3 A;  4LSF A;  2KC0 A;  4O3W A;  2R4O A;  3HOE A;  1MM5 A;  3NJT A;  1Q9F A;  1ZHY A;  1HXX A;  4FSO A;  3RBH A;  3TZG A;  4RL9 A;  2N2L A;  2R8A A;  2WJQ A;  3AAE B;  4GF4 A;  3VY9 X;  5B5E O;  1T1L A;  7PRN A;  3AA1 B;  4G76 A;  5IYU A;  2XE2 A;  3AA6 A;  4K3B A;  4IL6 O;  4GHB A;  2KZ7 B;  3SYB A;  4C4V A;  4FSP A;  2OMF A;  2XE1 A;  3DWO X;  3POR A;  3PQS A;  4KRA A;  5DL8 A;  5G39 A;  2AXT O;  2LHF A;  5AFU K;  4AKR A;  2XE3 A;  3VZU X;  3QRA A;  5AFU L;  1MPF A;  4FOZ A;  4D5U A;  4AYI D;  4JCH A;  2WJR A;  2J4U P;  1ZHX A;  3WI4 A;  2R4L A;  5G3A A;  2R4P A;  4Z3T A;  4RJX A;  3DA4 A;  3QRC A;  4FQE A;  3K19 A;  3LK2 A;  2F1V A; 
#chains in the Genus database with same CATH homology
 2KXP A;  2ERV A;  1IZN A;  3VE2 A;  5ADX K;  4O49 A;  1BXW A;  1E54 A;  2ODJ A;  3AA0 B;  4FES A;  4GCP A;  3WI5 A;  2MNH A;  4AYE C;  4B61 A;  3SZV A;  3DA3 A;  4O4U A;  1QJ9 A;  2W81 C;  3POU A;  2O4V A;  2Y0L A;  2ZFG A;  3AA7 B;  1THQ A;  2FGR A;  1ZHT A;  5G26 A;  5PRN A;  1ZHZ A;  4N58 A;  1GFQ A;  3FYX A;  3SZD A;  4AUI A;  2JMM A;  4AYM C;  4GCQ A;  6PRN A;  5FVN A;  3AAA B;  3VZW X;  1GFP A;  1YS5 A;  1ZHW A;  4AYN A;  1HXT A;  1OSM A;  4JFB A;  1MM4 A;  4C69 X;  1HXU A;  3HW9 A;  2XTQ A;  3UAQ A;  3LK3 B;  3POX A;  3UU2 A;  2QTK A;  1BT9 A;  4AFK A;  2Y0H A;  2PRN A;  3JTY A;  2X27 X;  3VE1 A;  5ADX L;  2K4T A;  3AAE A;  2N2M A;  2M06 A;  3POQ A;  3AA6 B;  3G7G A;  4XNL A;  3AA1 A;  1H6S 1;  3C5O A;  1BH3 A;  2KZ7 A;  2F1T A;  1G90 A;  3O0E A;  4FRT A;  3T24 A;  3HWB A;  4AKR B;  1P4T A;  1GFN A;  2W80 C;  5EE2 A;  2XG6 A;  3PQU A;  5JDP A;  2ZLD A;  4FMS A;  3A2S X;  4XNK A;  3HOL A;  1GFO A;  3T20 A;  3PRN A;  4AKM A;  3LK4 1;  4E1T A;  1ORM A;  5DL7 A;  3LK2 B;  4D65 A;  1OPF A;  2KXP B;  1IZN B;  8PRN A;  4LSH A;  1PRN A;  4RLC A;  4RLB A;  4U9C A;  1Q9G A;  2LFU A;  4FUV A;  5DL6 A;  3UPG A;  5D5D A;  4G75 A;  4FRX A;  4AZL A;  4LSI A;  2K0L A;  3NSG A;  4FZL A;  3AA0 A;  5DL5 A;  2J1N A;  1GFM A;  4N59 A;  4O3Y A;  2KDY A;  4PUX A;  1QJP A;  4LSE A;  3V8U A;  2XE5 A;  2YNK A;  2POR A;  5T5F A;  2XTR A;  3T0S A;  3VY8 X;  4E1S A;  2Y7S A;  2Y2X A;  4QQ1 A;  3VZT X;  3AA7 A;  4AYD C;  4BUM X;  4O3Z A;  5GV0 A;  4RJW A;  4KR8 A;  7PRN A;  4O3X B;  2XMX A;  4FT6 A;  2Y0K A;  4GCS A;  3LK4 2;  4O4X A;  4KR4 A;  1PHO A;  4FZM A;  3KVD D;  2YPV A;  3GP6 A;  2FGQ X;  3AAA A;  3SYS A;  4F4B A;  2M07 A;  2MHL A;  3SY9 A;  2GE4 A;  4FZN A;  3EMN X;  1QJ8 A;  3SY7 A;  3LK3 A;  4LSF A;  2KC0 A;  4O3W A;  3HOE A;  1MM5 A;  1Q9F A;  1ZHY A;  1HXX A;  4FSO A;  3RBH A;  3TZG A;  4RL9 A;  2N2L A;  4GF4 A;  3AAE B;  3VY9 X;  3AA1 B;  4G76 A;  5IYU A;  2XE2 A;  3AA6 A;  4GHB A;  2KZ7 B;  3SYB A;  4FSP A;  2OMF A;  2XE1 A;  3POR A;  3PQS A;  4KRA A;  5DL8 A;  2LHF A;  5AFU K;  4AKR A;  2XE3 A;  3VZU X;  3QRA A;  5AFU L;  1MPF A;  4FOZ A;  4D5U A;  4AYI D;  4JCH A;  2J4U P;  1ZHX A;  3WI4 A;  4Z3T A;  4RJX A;  3DA4 A;  3QRC A;  4D64 A;  3K19 A;  3LK2 A;  2F1V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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