3NSGA

Crystal structure of ompf, an outer membrane protein from salmonella typhi
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
341
structure length
341
Chain Sequence
MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein F
publication title Asymmetric pore occupancy in crystal structure of OmpF porin from Salmonella typhi
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
total genus 66
structure length 341
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3nsgA00
2PRNA 4FSOA 4LSHA 4KRAA 1OPFA 1HXXA 3JTYA 4KR8A 3NSGA 3T0SA 2Y0LA 4AUIA 3UPGA 1GFPA 3POUA 2ZFGA 2XE2A 5DL5A 1GFQA 3WI4A 2PORA 2K4TA 2J4UP 2OMFA 4FMSA 4GCPA 3POXA 4D64A 2O4VA 3VZTX 8PRNA 1MPFA 5DL7A 3HWBA 5DL8A 2J1NA 1BT9A 4FRTA 1HXTA 3A2SX 4D5UA 3HW9A 4RJXA 3SZVA 4JFBA 5DL6A 2XE3A 2Y2XA 6PRNA 3K19A 2QTKA 2ODJA 2FGRA 3SY9A 2Y0HA 1GFOA 4RJWA 3EMNX 3SYSA 3UU2A 4GCQA 3VZUX 3VY9X 4GCSA 3T20A 3VY8X 2ZLDA 4C69X 3T24A 7PRNA 4KR4A 3VZWX 4BUMX 2XE1A 4FRXA 4LSFA 5PRNA 1PHOA 4FOZA 4FSPA 3SYBA 3O0EA 3WI5A 4D65A 3FYXA 3SY7A 1OSMA 1H6S1 2FGQX 1PRNA 5FVNA 3PORA 2XE5A 3PRNA 3POQA 1E54A 1BH3A 1GFMA 2Y0KA 3SZDA 4LSIA 1HXUA 4FT6A 1GFNA 2XG6A 4LSEA 5JDPA
chains in the Genus database with same CATH superfamily
2PRNA 2R8AA 3LK3A 3A0HO 4FSOA 4LSHA 2XTRA 1ZHXA 5AFUK 5GTHO 2M06A 3PGRA 4KRAA 4AYID 1OPFA 1HXXA 3KVDD 4O4XA 3JTYA 1IZNA 3DA3A 3NSGA 4KR8A 4O49A 4RLCA 3T0SA 1G90A 2Y0LA 4AUIA 1THQA 2KZ7B 4FQEA 3UPGA 1P4TA 1GFPA 3HOEA 3POUA 2MNHA 2WJQA 2ZFGA 3LK2A 2XE2A 3AA7B 2ERVA 3C5OA 3LK41 3QRAA 1BXWA 2F1VA 5DL5A 2F1TA 4G75A 4K3CA 4O3WA 1GFQA 3WI4A 2AXTO 3V8UA 2WJRA 4FZNA 2PORA 2K4TA 4N59A 2J4UP 1ZHTA 3LK42 3AAAA 4K3BA 4F4BA 2OMFA 4FMSA 1MM4A 3AA1A 3POXA 3NJTA 3PQUA 1YS5A 1ZHWA 2O4VA 4GCPA 3KZIO 4O3ZA 5E79O 2YNKA 3PGSA 3G7GA 3VZTX 8PRNA 1MPFA 2LFUA 3AAEB 5DL7A 4AKMA 5ADXK 3AA0A 3HWBA 5DL8A 2J1NA 4C00A 2IWWA 3QRCA 5GTIO 2K0LA 4FUVA 4AYNA 5AFUL 3LK3B 1BT9A 4FRTA 2KXPA 1HXTA 3BS0A 3VE2A 3DA4A 4FZMA 2KDYA 3A2SX 2IWVA 2R4LA 3WU2O 3JCUO 4G76A 5B5EO 1IZNB 4D5UA 3TZGA 3HW9A 4RJXA 4E1TA 3SZVA 2N2MA 3A0BO 4JFBA 3DZMA 4AFKA 4C4VA 3PF1A 2N2LA 2XE3A 2Y2XA 4UB6O 5DL6A 4E1SA 6PRNA 2R88A 2MHLA 3K19A 2QTKA 2ODJA 3HOLA 3DWOX 2W80C 5KAFO 4AYEC 2FGRA 4O4UA 4N75A 4XNLA 3SY9A 2Y0HA 1GFOA 2XMXA 4B61A 4RJWA 3EMNX 3AA6A 3SYSA 4N74A 3AAAB 4U9CA 3UU2A 4AKRA 4O3XB 3AA1B 5ADXL 3DWNA 4GCQA 3AA7A 3VY9X 4GCSA 3VZUX 4Z3TA 5G26A 2JMMA 5G38A 2WVPA 1MM5A 4QQ1A 3GP6A 3T20A 3VY8X 1QJPA 4FESA 3RBHA 4N58A 2ZLDA 4C69X 5TISO 3T24A 3PGUA 4KR4A 4AYDC 2KXPB 4PUXA 3VZWX 7PRNA 1Q9GA 5GV0A 2F1CX 4XNKA 4BUMX 4PR7A 2XE1A 5D5DA 2R4OA 4FRXA 4RLBA 4LSFA 5PRNA 1PHOA 1QJ9A 4FOZA 4FSPA 4JCHA 4AYMC 3BRZA 3LK2B 2KC0A 5IYUA 5G3AA 2M07A 1S5LO 3SYBA 3O0EA 2R4NA 3BRYA 4AZLA 2LHFA 3UAQA 2W81C 4PJ0O 3WI5A 1ZHYA 2JQYA 4D65A 3FYXA 4GHBA 2R89A 3SY7A 2KZ7A 4UB8O 5T5FA 1QJ8A 1OSMA 2R4PA 4GF4A 2GE4A 1H6S1 5KAIO 1ORMA 3AA6B 2YPVA 1ZHZA 2Y7SA 2FGQX 4AKRB 1PRNA 1T1LA 3PQSA 5FVNA 3AA0B 3PORA 2XE5A 2XTQA 3PRNA 3POQA 1E54A 3VE1A 5EE2A 2X9KA 5H2FO 1BH3A 4CTDA 4RL9A 5G39A 1GFMA 2Y0KA 4D64A 3SZDA 4LSIA 5B66O 1HXUA 4FT6A 3AAEA 4C4VB 4O3YA 1GFNA 2XG6A 4FZLA 4IL6O 4LSEA 5JDPA 1Q9FA 1T16A 2X27X
chains in the Genus database with same CATH topology
2PRNA 3LK3A 4FSOA 4LSHA 2XTRA 1ZHXA 5AFUK 2M06A 4KRAA 4AYID 1OPFA 1HXXA 3KVDD 4O4XA 3JTYA 1IZNA 3DA3A 3NSGA 4KR8A 4O49A 4RLCA 3T0SA 1G90A 2Y0LA 4AUIA 1THQA 2KZ7B 3UPGA 1P4TA 1GFPA 3HOEA 3POUA 2MNHA 2ZFGA 3LK2A 2XE2A 3AA7B 2ERVA 3C5OA 3LK41 3QRAA 1BXWA 2F1VA 5DL5A 2F1TA 4G75A 4O3WA 1GFQA 3WI4A 3V8UA 4FZNA 2PORA 2K4TA 4N59A 2J4UP 1ZHTA 3LK42 3AAAA 4F4BA 2OMFA 4FMSA 1MM4A 3AA1A 3POXA 3PQUA 4GCPA 1YS5A 1ZHWA 2O4VA 4D64A 4O3ZA 3VZTX 2YNKA 3G7GA 8PRNA 1MPFA 2LFUA 3AAEB 5DL7A 4AKMA 5ADXK 3AA0A 3HWBA 5DL8A 2J1NA 3QRCA 5AFUL 2K0LA 4FUVA 4AYNA 3LK3B 1BT9A 4FRTA 2KXPA 1HXTA 3VE2A 3DA4A 4FZMA 2KDYA 3A2SX 4G76A 1IZNB 4D5UA 3TZGA 3HW9A 4RJXA 4E1TA 3SZVA 2N2MA 4JFBA 4AFKA 2N2LA 2XE3A 2Y2XA 5DL6A 4E1SA 6PRNA 2MHLA 3K19A 2QTKA 2ODJA 3HOLA 2W80C 4AYEC 2FGRA 4O4UA 4XNLA 3SY9A 2Y0HA 2XMXA 1GFOA 4B61A 4RJWA 3EMNX 3AA6A 3SYSA 3AAAB 4U9CA 3UU2A 4AKRA 4O3XB 3AA1B 5ADXL 4GCQA 3VZUX 3AA7A 3VY9X 4GCSA 4Z3TA 5G26A 2JMMA 1MM5A 4QQ1A 3GP6A 3T20A 3VY8X 1QJPA 4FESA 3RBHA 4N58A 2ZLDA 4C69X 3T24A 7PRNA 4KR4A 4AYDC 2KXPB 4PUXA 3VZWX 1Q9GA 5GV0A 4XNKA 4BUMX 2XE1A 5D5DA 4FRXA 4RLBA 4LSFA 5PRNA 1PHOA 1QJ9A 4FOZA 4FSPA 4JCHA 4AYMC 3LK2B 2KC0A 5IYUA 2M07A 3SYBA 3O0EA 4AZLA 2LHFA 3UAQA 2W81C 3WI5A 1ZHYA 4D65A 3FYXA 4GHBA 3SY7A 2KZ7A 5T5FA 1QJ8A 1OSMA 4GF4A 2GE4A 1H6S1 1ORMA 3AA6B 2YPVA 1ZHZA 2Y7SA 2FGQX 4AKRB 1PRNA 3PQSA 5FVNA 3AA0B 3PORA 2XE5A 2XTQA 3PRNA 3POQA 1E54A 3VE1A 5EE2A 1BH3A 4RL9A 1GFMA 2Y0KA 3SZDA 4LSIA 1HXUA 4FT6A 3AAEA 4O3YA 1GFNA 2XG6A 4FZLA 4LSEA 5JDPA 1Q9FA 2X27X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRN A;  4FSO A;  4LSH A;  4KRA A;  1OPF A;  1HXX A;  3JTY A;  4KR8 A;  3NSG A;  3T0S A;  2Y0L A;  4AUI A;  3UPG A;  1GFP A;  3POU A;  2ZFG A;  2XE2 A;  5DL5 A;  1GFQ A;  3WI4 A;  2POR A;  2K4T A;  2J4U P;  2OMF A;  4FMS A;  4GCP A;  3POX A;  4D64 A;  2O4V A;  3VZT X;  8PRN A;  1MPF A;  5DL7 A;  3HWB A;  5DL8 A;  2J1N A;  1BT9 A;  4FRT A;  1HXT A;  3A2S X;  4D5U A;  3HW9 A;  4RJX A;  3SZV A;  4JFB A;  5DL6 A;  2XE3 A;  2Y2X A;  6PRN A;  3K19 A;  2QTK A;  2ODJ A;  2FGR A;  3SY9 A;  2Y0H A;  1GFO A;  4RJW A;  3EMN X;  3SYS A;  3UU2 A;  4GCQ A;  3VZU X;  3VY9 X;  4GCS A;  3T20 A;  3VY8 X;  2ZLD A;  4C69 X;  3T24 A;  7PRN A;  4KR4 A;  3VZW X;  4BUM X;  2XE1 A;  4FRX A;  4LSF A;  5PRN A;  1PHO A;  4FOZ A;  4FSP A;  3SYB A;  3O0E A;  3WI5 A;  4D65 A;  3FYX A;  3SY7 A;  1OSM A;  1H6S 1;  2FGQ X;  1PRN A;  5FVN A;  3POR A;  2XE5 A;  3PRN A;  3POQ A;  1E54 A;  1BH3 A;  1GFM A;  2Y0K A;  3SZD A;  4LSI A;  1HXU A;  4FT6 A;  1GFN A;  2XG6 A;  4LSE A;  5JDP A; 
#chains in the Genus database with same CATH topology
 2PRN A;  2R8A A;  3LK3 A;  3A0H O;  4FSO A;  4LSH A;  2XTR A;  1ZHX A;  5AFU K;  5GTH O;  2M06 A;  3PGR A;  4KRA A;  4AYI D;  1OPF A;  1HXX A;  3KVD D;  4O4X A;  3JTY A;  1IZN A;  3DA3 A;  3NSG A;  4KR8 A;  4O49 A;  4RLC A;  3T0S A;  1G90 A;  2Y0L A;  4AUI A;  1THQ A;  2KZ7 B;  4FQE A;  3UPG A;  1P4T A;  1GFP A;  3HOE A;  3POU A;  2MNH A;  2WJQ A;  2ZFG A;  3LK2 A;  2XE2 A;  3AA7 B;  2ERV A;  3C5O A;  3LK4 1;  3QRA A;  1BXW A;  2F1V A;  5DL5 A;  2F1T A;  4G75 A;  4K3C A;  4O3W A;  1GFQ A;  3WI4 A;  2AXT O;  3V8U A;  2WJR A;  4FZN A;  2POR A;  2K4T A;  4N59 A;  2J4U P;  1ZHT A;  3LK4 2;  3AAA A;  4K3B A;  4F4B A;  2OMF A;  4FMS A;  1MM4 A;  3AA1 A;  3POX A;  3NJT A;  3PQU A;  1YS5 A;  1ZHW A;  2O4V A;  4GCP A;  3KZI O;  4O3Z A;  5E79 O;  2YNK A;  3PGS A;  3G7G A;  3VZT X;  8PRN A;  1MPF A;  2LFU A;  3AAE B;  5DL7 A;  4AKM A;  5ADX K;  3AA0 A;  3HWB A;  5DL8 A;  2J1N A;  4C00 A;  2IWW A;  3QRC A;  5GTI O;  2K0L A;  4FUV A;  4AYN A;  5AFU L;  3LK3 B;  1BT9 A;  4FRT A;  2KXP A;  1HXT A;  3BS0 A;  3VE2 A;  3DA4 A;  4FZM A;  2KDY A;  3A2S X;  2IWV A;  2R4L A;  3WU2 O;  3JCU O;  4G76 A;  5B5E O;  1IZN B;  4D5U A;  3TZG A;  3HW9 A;  4RJX A;  4E1T A;  3SZV A;  2N2M A;  3A0B O;  4JFB A;  3DZM A;  4AFK A;  4C4V A;  3PF1 A;  2N2L A;  2XE3 A;  2Y2X A;  4UB6 O;  5DL6 A;  4E1S A;  6PRN A;  2R88 A;  2MHL A;  3K19 A;  2QTK A;  2ODJ A;  3HOL A;  3DWO X;  2W80 C;  5KAF O;  4AYE C;  2FGR A;  4O4U A;  4N75 A;  4XNL A;  3SY9 A;  2Y0H A;  1GFO A;  2XMX A;  4B61 A;  4RJW A;  3EMN X;  3AA6 A;  3SYS A;  4N74 A;  3AAA B;  4U9C A;  3UU2 A;  4AKR A;  4O3X B;  3AA1 B;  5ADX L;  3DWN A;  4GCQ A;  3AA7 A;  3VY9 X;  4GCS A;  3VZU X;  4Z3T A;  5G26 A;  2JMM A;  5G38 A;  2WVP A;  1MM5 A;  4QQ1 A;  3GP6 A;  3T20 A;  3VY8 X;  1QJP A;  4FES A;  3RBH A;  4N58 A;  2ZLD A;  4C69 X;  5TIS O;  3T24 A;  3PGU A;  4KR4 A;  4AYD C;  2KXP B;  4PUX A;  3VZW X;  7PRN A;  1Q9G A;  5GV0 A;  2F1C X;  4XNK A;  4BUM X;  4PR7 A;  2XE1 A;  5D5D A;  2R4O A;  4FRX A;  4RLB A;  4LSF A;  5PRN A;  1PHO A;  1QJ9 A;  4FOZ A;  4FSP A;  4JCH A;  4AYM C;  3BRZ A;  3LK2 B;  2KC0 A;  5IYU A;  5G3A A;  2M07 A;  1S5L O;  3SYB A;  3O0E A;  2R4N A;  3BRY A;  4AZL A;  2LHF A;  3UAQ A;  2W81 C;  4PJ0 O;  3WI5 A;  1ZHY A;  2JQY A;  4D65 A;  3FYX A;  4GHB A;  2R89 A;  3SY7 A;  2KZ7 A;  4UB8 O;  5T5F A;  1QJ8 A;  1OSM A;  2R4P A;  4GF4 A;  2GE4 A;  1H6S 1;  5KAI O;  1ORM A;  3AA6 B;  2YPV A;  1ZHZ A;  2Y7S A;  2FGQ X;  4AKR B;  1PRN A;  1T1L A;  3PQS A;  5FVN A;  3AA0 B;  3POR A;  2XE5 A;  2XTQ A;  3PRN A;  3POQ A;  1E54 A;  3VE1 A;  5EE2 A;  2X9K A;  5H2F O;  1BH3 A;  4CTD A;  4RL9 A;  5G39 A;  1GFM A;  2Y0K A;  4D64 A;  3SZD A;  4LSI A;  5B66 O;  1HXU A;  4FT6 A;  3AAE A;  4C4V B;  4O3Y A;  1GFN A;  2XG6 A;  4FZL A;  4IL6 O;  4LSE A;  5JDP A;  1Q9F A;  1T16 A;  2X27 X; 
#chains in the Genus database with same CATH homology
 2PRN A;  3LK3 A;  4FSO A;  4LSH A;  2XTR A;  1ZHX A;  5AFU K;  2M06 A;  4KRA A;  4AYI D;  1OPF A;  1HXX A;  3KVD D;  4O4X A;  3JTY A;  1IZN A;  3DA3 A;  3NSG A;  4KR8 A;  4O49 A;  4RLC A;  3T0S A;  1G90 A;  2Y0L A;  4AUI A;  1THQ A;  2KZ7 B;  3UPG A;  1P4T A;  1GFP A;  3HOE A;  3POU A;  2MNH A;  2ZFG A;  3LK2 A;  2XE2 A;  3AA7 B;  2ERV A;  3C5O A;  3LK4 1;  3QRA A;  1BXW A;  2F1V A;  5DL5 A;  2F1T A;  4G75 A;  4O3W A;  1GFQ A;  3WI4 A;  3V8U A;  4FZN A;  2POR A;  2K4T A;  4N59 A;  2J4U P;  1ZHT A;  3LK4 2;  3AAA A;  4F4B A;  2OMF A;  4FMS A;  1MM4 A;  3AA1 A;  3POX A;  3PQU A;  4GCP A;  1YS5 A;  1ZHW A;  2O4V A;  4D64 A;  4O3Z A;  3VZT X;  2YNK A;  3G7G A;  8PRN A;  1MPF A;  2LFU A;  3AAE B;  5DL7 A;  4AKM A;  5ADX K;  3AA0 A;  3HWB A;  5DL8 A;  2J1N A;  3QRC A;  5AFU L;  2K0L A;  4FUV A;  4AYN A;  3LK3 B;  1BT9 A;  4FRT A;  2KXP A;  1HXT A;  3VE2 A;  3DA4 A;  4FZM A;  2KDY A;  3A2S X;  4G76 A;  1IZN B;  4D5U A;  3TZG A;  3HW9 A;  4RJX A;  4E1T A;  3SZV A;  2N2M A;  4JFB A;  4AFK A;  2N2L A;  2XE3 A;  2Y2X A;  5DL6 A;  4E1S A;  6PRN A;  2MHL A;  3K19 A;  2QTK A;  2ODJ A;  3HOL A;  2W80 C;  4AYE C;  2FGR A;  4O4U A;  4XNL A;  3SY9 A;  2Y0H A;  2XMX A;  1GFO A;  4B61 A;  4RJW A;  3EMN X;  3AA6 A;  3SYS A;  3AAA B;  4U9C A;  3UU2 A;  4AKR A;  4O3X B;  3AA1 B;  5ADX L;  4GCQ A;  3VZU X;  3AA7 A;  3VY9 X;  4GCS A;  4Z3T A;  5G26 A;  2JMM A;  1MM5 A;  4QQ1 A;  3GP6 A;  3T20 A;  3VY8 X;  1QJP A;  4FES A;  3RBH A;  4N58 A;  2ZLD A;  4C69 X;  3T24 A;  7PRN A;  4KR4 A;  4AYD C;  2KXP B;  4PUX A;  3VZW X;  1Q9G A;  5GV0 A;  4XNK A;  4BUM X;  2XE1 A;  5D5D A;  4FRX A;  4RLB A;  4LSF A;  5PRN A;  1PHO A;  1QJ9 A;  4FOZ A;  4FSP A;  4JCH A;  4AYM C;  3LK2 B;  2KC0 A;  5IYU A;  2M07 A;  3SYB A;  3O0E A;  4AZL A;  2LHF A;  3UAQ A;  2W81 C;  3WI5 A;  1ZHY A;  4D65 A;  3FYX A;  4GHB A;  3SY7 A;  2KZ7 A;  5T5F A;  1QJ8 A;  1OSM A;  4GF4 A;  2GE4 A;  1H6S 1;  1ORM A;  3AA6 B;  2YPV A;  1ZHZ A;  2Y7S A;  2FGQ X;  4AKR B;  1PRN A;  3PQS A;  5FVN A;  3AA0 B;  3POR A;  2XE5 A;  2XTQ A;  3PRN A;  3POQ A;  1E54 A;  3VE1 A;  5EE2 A;  1BH3 A;  4RL9 A;  1GFM A;  2Y0K A;  3SZD A;  4LSI A;  1HXU A;  4FT6 A;  3AAE A;  4O3Y A;  1GFN A;  2XG6 A;  4FZL A;  4LSE A;  5JDP A;  1Q9F A;  2X27 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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