3NSGA

Crystal structure of ompf, an outer membrane protein from salmonella typhi
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
341
structure length
341
Chain Sequence
MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Asymmetric pore occupancy in crystal structure of OmpF porin from Salmonella typhi
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 66
structure length 341
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3nsgA00
6PRNA 1HXTA 2XE5A 1PRNA 1E54A 4LSEA 3T0SA 4GCPA 4GCQA 2PRNA 2Y0LA 3O0EA 4C69X 2XE2A 2Y0HA 2J1NA 2J4UP 4AUIA 3JTYA 4LSIA 7PRNA 1GFNA 1GFPA 5PRNA 2OMFA 3K19A 4FSOA 1GFMA 4FMSA 3UU2A 3POUA 2FGRA 5DL7A 1HXXA 4GCSA 3SY7A 1BH3A 2XG6A 4FRTA 3VZUX 1GFQA 2Y2XA 3HW9A 2ODJA 2K4TA 2XE1A 2Y0KA 4FOZA 3VZTX 4D64A 4FT6A 3VY8X 3WI5A 1OSMA 4D5UA 4BUMX 4FRXA 4RJXA 2PORA 5DL5A 5DL6A 4LSHA 8PRNA 3SY9A 3PORA 2XE3A 3SZVA 5FVNA 3POXA 5JDPA 5DL8A 3FYXA 3PRNA 3T20A 3SYSA 1BT9A 3POQA 3VY9X 3HWBA 3VZWX 2O4VA 1GFOA 1PHOA 4KR8A 1OPFA 3A2SX 3SYBA 2FGQX 4D65A 4RJWA 3NSGA 4JFBA 1HXUA 3WI4A 1MPFA 2QTKA 4LSFA 4FSPA 2ZLDA 3EMNX 3T24A 4KR4A 2ZFGA 1H6S1 4KRAA 3SZDA 3UPGA
chains in the Genus database with same CATH superfamily
4O3WA 1QJ9A 1HXTA 4C00A 6PRNA 2N2LA 2XE5A 4N59A 3AA0A 5ADXK 1PRNA 4K3CA 4K3BA 1E54A 1S5LO 4LSEA 1MM4A 3BS0A 3QRCA 3T0SA 4GCPA 2R88A 3C5OA 4GCQA 5GTIO 2Y7SA 1ZHTA 4PR7A 1ZHXA 2PRNA 2Y0LA 3KVDD 3O0EA 2XE2A 4O3ZA 2Y0HA 2J1NA 3BRZA 3VE2A 4AUIA 4C69X 4C4VA 3JTYA 2J4UP 2N2MA 4XNLA 4LSIA 3JCUO 7PRNA 1P4TA 1GFNA 1GFPA 1Q9GA 3LK42 3AA1B 3LK2A 3PQSA 5PRNA 4FQEA 4AKRB 2OMFA 4E1TA 1IZNB 3K19A 4FSOA 1GFMA 2WJRA 2R4LA 3QRAA 4FMSA 2F1TA 2AXTO 2R4NA 3G7GA 3RBHA 1YS5A 3A0HO 3UU2A 5B66O 3HOLA 4RL9A 3PGSA 4Z3TA 3PQUA 2M06A 3POUA 2FGRA 3AA6A 5D5DA 4PJ0O 5DL7A 1HXXA 4AYEC 4GCSA 2IWWA 3DA4A 3AAAA 4O3YA 3SY7A 2KXPB 4B61A 4AYID 1BH3A 2XG6A 4FRTA 4XNKA 3VZUX 1GFQA 2WVPA 1ZHWA 2Y2XA 3HW9A 2MHLA 5KAFO 3NJTA 2ODJA 1QJ8A 2K4TA 2XE1A 4U9CA 2KDYA 2Y0KA 4AZLA 1Q9FA 2M07A 2R4OA 4FOZA 3VZTX 3PGUA 3VE1A 3AAEB 4FUVA 4O3XB 3AA7A 5E79O 4G76A 2LHFA 2X9KA 4FT6A 4D64A 5G26A 2MNHA 3VY8X 3AA0B 3WI5A 1OSMA 2XTQA 3DA3A 3DWOX 5B5EO 2W81C 4FZMA 4AKRA 3LK41 4JCHA 4FRXA 4RJXA 2PORA 4BUMX 4D5UA 1G90A 2IWVA 1IZNA 2KZ7A 5DL5A 4CTDA 2R89A 1ZHYA 4F4BA 3DZMA 4AYDC 4IL6O 4N75A 4UB8O 5DL6A 5T5FA 4LSHA 2WJQA 3DWNA 3GP6A 4E1SA 4FZNA 8PRNA 3SY9A 3PORA 2YNKA 3TZGA 2XE3A 3SZVA 2JMMA 5FVNA 3POXA 1ORMA 3HOEA 5EE2A 3BRYA 2KXPA 5JDPA 2LFUA 5DL8A 3UAQA 1BXWA 2X27X 3FYXA 3LK3B 2R4PA 4GF4A 3PRNA 5TISO 3T20A 5AFUL 5G38A 4QQ1A 4RLCA 2F1VA 4N58A 3SYSA 1BT9A 3POQA 2W80C 1ZHZA 3VY9X 3HWBA 3VZWX 2K0LA 2O4VA 3AAAB 1GFOA 1PHOA 4GHBA 4G75A 4O49A 4KR8A 2ERVA 3AA1A 4FESA 5G39A 1OPFA 3A2SX 1QJPA 2KC0A 3SYBA 4O4XA 3V8UA 1T1LA 5H2FO 3PGRA 3WU2O 1MM5A 2F1CX 4C4VB 3AA7B 5KAIO 2FGQX 4D65A 4RJWA 3PF1A 3KZIO 2R8AA 3NSGA 4FZLA 2YPVA 3A0BO 4JFBA 3LK2B 1HXUA 3WI4A 4AYNA 5AFUK 1MPFA 2QTKA 2XMXA 4RLBA 4O4UA 4PUXA 1THQA 4N74A 4LSFA 4AYMC 5G3AA 4FSPA 2ZLDA 3EMNX 3T24A 2KZ7B 4AFKA 4UB6O 4KR4A 5ADXL 5IYUA 2ZFGA 1T16A 1H6S1 2GE4A 2XTRA 3AA6B 4KRAA 3LK3A 3SZDA 5GV0A 3UPGA 5GTHO 3AAEA 2JQYA 4AKMA
chains in the Genus database with same CATH topology
4O3WA 1QJ9A 1HXTA 6PRNA 2N2LA 2XE5A 4N59A 3AA0A 5ADXK 1PRNA 1E54A 4LSEA 1MM4A 3T0SA 3QRCA 4GCPA 3C5OA 4GCQA 2Y7SA 1ZHTA 1ZHXA 2PRNA 2Y0LA 3KVDD 3O0EA 2XE2A 4O3ZA 2Y0HA 2J1NA 4C69X 3VE2A 4AUIA 2J4UP 3JTYA 2N2MA 4XNLA 4LSIA 7PRNA 1P4TA 1GFNA 1GFPA 1Q9GA 3LK42 3AA1B 3LK2A 3PQSA 5PRNA 4AKRB 4E1TA 2OMFA 1IZNB 3K19A 4FSOA 1GFMA 3QRAA 4FMSA 2F1TA 3UU2A 3RBHA 3G7GA 1YS5A 3HOLA 4RL9A 4Z3TA 3PQUA 2M06A 3POUA 2FGRA 3AA6A 5D5DA 5DL7A 1HXXA 4AYEC 4GCSA 3DA4A 3AAAA 4O3YA 3SY7A 2KXPB 4B61A 4AYID 1BH3A 2XG6A 4FRTA 4XNKA 3VZUX 1GFQA 2Y2XA 1ZHWA 3HW9A 2MHLA 2ODJA 1QJ8A 2K4TA 2XE1A 4U9CA 2KDYA 2Y0KA 4AZLA 1Q9FA 2M07A 4FOZA 3VZTX 3VE1A 3AAEB 4FUVA 4O3XB 3AA7A 4G76A 2LHFA 4D64A 4FT6A 5G26A 2MNHA 3VY8X 3AA0B 3WI5A 1OSMA 2XTQA 3DA3A 2W81C 4FZMA 4AKRA 3LK41 4JCHA 4FRXA 4RJXA 2PORA 4BUMX 4D5UA 1G90A 1IZNA 2KZ7A 5DL5A 1ZHYA 4F4BA 4AYDC 5DL6A 5T5FA 4LSHA 3GP6A 4E1SA 4FZNA 8PRNA 3SY9A 3PORA 2YNKA 3TZGA 2XE3A 3SZVA 2JMMA 5FVNA 3POXA 1ORMA 3HOEA 5EE2A 2KXPA 5JDPA 2LFUA 5DL8A 3UAQA 1BXWA 2X27X 3FYXA 3LK3B 4GF4A 3PRNA 3T20A 5AFUL 4QQ1A 4RLCA 2F1VA 4N58A 3SYSA 1BT9A 3POQA 2W80C 1ZHZA 3VY9X 3HWBA 3VZWX 2K0LA 2O4VA 3AAAB 1GFOA 1PHOA 4GHBA 4G75A 4O49A 4KR8A 2ERVA 3AA1A 4FESA 1OPFA 3A2SX 1QJPA 2KC0A 3SYBA 4O4XA 3V8UA 1MM5A 3AA7B 2FGQX 4D65A 4RJWA 3NSGA 4FZLA 2YPVA 4AYNA 4JFBA 3LK2B 1HXUA 3WI4A 5AFUK 5ADXL 1MPFA 2XMXA 2QTKA 4RLBA 4O4UA 4PUXA 1THQA 4LSFA 4AYMC 4FSPA 2ZLDA 3EMNX 3T24A 2KZ7B 4AFKA 4KR4A 5IYUA 2ZFGA 1H6S1 2GE4A 2XTRA 3AA6B 4KRAA 3LK3A 3SZDA 5GV0A 3UPGA 3AAEA 4AKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 6PRN A;  1HXT A;  2XE5 A;  1PRN A;  1E54 A;  4LSE A;  3T0S A;  4GCP A;  4GCQ A;  2PRN A;  2Y0L A;  3O0E A;  4C69 X;  2XE2 A;  2Y0H A;  2J1N A;  2J4U P;  4AUI A;  3JTY A;  4LSI A;  7PRN A;  1GFN A;  1GFP A;  5PRN A;  2OMF A;  3K19 A;  4FSO A;  1GFM A;  4FMS A;  3UU2 A;  3POU A;  2FGR A;  5DL7 A;  1HXX A;  4GCS A;  3SY7 A;  1BH3 A;  2XG6 A;  4FRT A;  3VZU X;  1GFQ A;  2Y2X A;  3HW9 A;  2ODJ A;  2K4T A;  2XE1 A;  2Y0K A;  4FOZ A;  3VZT X;  4D64 A;  4FT6 A;  3VY8 X;  3WI5 A;  1OSM A;  4D5U A;  4BUM X;  4FRX A;  4RJX A;  2POR A;  5DL5 A;  5DL6 A;  4LSH A;  8PRN A;  3SY9 A;  3POR A;  2XE3 A;  3SZV A;  5FVN A;  3POX A;  5JDP A;  5DL8 A;  3FYX A;  3PRN A;  3T20 A;  3SYS A;  1BT9 A;  3POQ A;  3VY9 X;  3HWB A;  3VZW X;  2O4V A;  1GFO A;  1PHO A;  4KR8 A;  1OPF A;  3A2S X;  3SYB A;  2FGQ X;  4D65 A;  4RJW A;  3NSG A;  4JFB A;  1HXU A;  3WI4 A;  1MPF A;  2QTK A;  4LSF A;  4FSP A;  2ZLD A;  3EMN X;  3T24 A;  4KR4 A;  2ZFG A;  1H6S 1;  4KRA A;  3SZD A;  3UPG A; 
#chains in the Genus database with same CATH topology
 4O3W A;  1QJ9 A;  1HXT A;  4C00 A;  6PRN A;  2N2L A;  2XE5 A;  4N59 A;  3AA0 A;  5ADX K;  1PRN A;  4K3C A;  4K3B A;  1E54 A;  1S5L O;  4LSE A;  1MM4 A;  3BS0 A;  3QRC A;  3T0S A;  4GCP A;  2R88 A;  3C5O A;  4GCQ A;  5GTI O;  2Y7S A;  1ZHT A;  4PR7 A;  1ZHX A;  2PRN A;  2Y0L A;  3KVD D;  3O0E A;  2XE2 A;  4O3Z A;  2Y0H A;  2J1N A;  3BRZ A;  3VE2 A;  4AUI A;  4C69 X;  4C4V A;  3JTY A;  2J4U P;  2N2M A;  4XNL A;  4LSI A;  3JCU O;  7PRN A;  1P4T A;  1GFN A;  1GFP A;  1Q9G A;  3LK4 2;  3AA1 B;  3LK2 A;  3PQS A;  5PRN A;  4FQE A;  4AKR B;  2OMF A;  4E1T A;  1IZN B;  3K19 A;  4FSO A;  1GFM A;  2WJR A;  2R4L A;  3QRA A;  4FMS A;  2F1T A;  2AXT O;  2R4N A;  3G7G A;  3RBH A;  1YS5 A;  3A0H O;  3UU2 A;  5B66 O;  3HOL A;  4RL9 A;  3PGS A;  4Z3T A;  3PQU A;  2M06 A;  3POU A;  2FGR A;  3AA6 A;  5D5D A;  4PJ0 O;  5DL7 A;  1HXX A;  4AYE C;  4GCS A;  2IWW A;  3DA4 A;  3AAA A;  4O3Y A;  3SY7 A;  2KXP B;  4B61 A;  4AYI D;  1BH3 A;  2XG6 A;  4FRT A;  4XNK A;  3VZU X;  1GFQ A;  2WVP A;  1ZHW A;  2Y2X A;  3HW9 A;  2MHL A;  5KAF O;  3NJT A;  2ODJ A;  1QJ8 A;  2K4T A;  2XE1 A;  4U9C A;  2KDY A;  2Y0K A;  4AZL A;  1Q9F A;  2M07 A;  2R4O A;  4FOZ A;  3VZT X;  3PGU A;  3VE1 A;  3AAE B;  4FUV A;  4O3X B;  3AA7 A;  5E79 O;  4G76 A;  2LHF A;  2X9K A;  4FT6 A;  4D64 A;  5G26 A;  2MNH A;  3VY8 X;  3AA0 B;  3WI5 A;  1OSM A;  2XTQ A;  3DA3 A;  3DWO X;  5B5E O;  2W81 C;  4FZM A;  4AKR A;  3LK4 1;  4JCH A;  4FRX A;  4RJX A;  2POR A;  4BUM X;  4D5U A;  1G90 A;  2IWV A;  1IZN A;  2KZ7 A;  5DL5 A;  4CTD A;  2R89 A;  1ZHY A;  4F4B A;  3DZM A;  4AYD C;  4IL6 O;  4N75 A;  4UB8 O;  5DL6 A;  5T5F A;  4LSH A;  2WJQ A;  3DWN A;  3GP6 A;  4E1S A;  4FZN A;  8PRN A;  3SY9 A;  3POR A;  2YNK A;  3TZG A;  2XE3 A;  3SZV A;  2JMM A;  5FVN A;  3POX A;  1ORM A;  3HOE A;  5EE2 A;  3BRY A;  2KXP A;  5JDP A;  2LFU A;  5DL8 A;  3UAQ A;  1BXW A;  2X27 X;  3FYX A;  3LK3 B;  2R4P A;  4GF4 A;  3PRN A;  5TIS O;  3T20 A;  5AFU L;  5G38 A;  4QQ1 A;  4RLC A;  2F1V A;  4N58 A;  3SYS A;  1BT9 A;  3POQ A;  2W80 C;  1ZHZ A;  3VY9 X;  3HWB A;  3VZW X;  2K0L A;  2O4V A;  3AAA B;  1GFO A;  1PHO A;  4GHB A;  4G75 A;  4O49 A;  4KR8 A;  2ERV A;  3AA1 A;  4FES A;  5G39 A;  1OPF A;  3A2S X;  1QJP A;  2KC0 A;  3SYB A;  4O4X A;  3V8U A;  1T1L A;  5H2F O;  3PGR A;  3WU2 O;  1MM5 A;  2F1C X;  4C4V B;  3AA7 B;  5KAI O;  2FGQ X;  4D65 A;  4RJW A;  3PF1 A;  3KZI O;  2R8A A;  3NSG A;  4FZL A;  2YPV A;  3A0B O;  4JFB A;  3LK2 B;  1HXU A;  3WI4 A;  4AYN A;  5AFU K;  1MPF A;  2QTK A;  2XMX A;  4RLB A;  4O4U A;  4PUX A;  1THQ A;  4N74 A;  4LSF A;  4AYM C;  5G3A A;  4FSP A;  2ZLD A;  3EMN X;  3T24 A;  2KZ7 B;  4AFK A;  4UB6 O;  4KR4 A;  5ADX L;  5IYU A;  2ZFG A;  1T16 A;  1H6S 1;  2GE4 A;  2XTR A;  3AA6 B;  4KRA A;  3LK3 A;  3SZD A;  5GV0 A;  3UPG A;  5GTH O;  3AAE A;  2JQY A;  4AKM A; 
#chains in the Genus database with same CATH homology
 4O3W A;  1QJ9 A;  1HXT A;  6PRN A;  2N2L A;  2XE5 A;  4N59 A;  3AA0 A;  5ADX K;  1PRN A;  1E54 A;  4LSE A;  1MM4 A;  3T0S A;  3QRC A;  4GCP A;  3C5O A;  4GCQ A;  2Y7S A;  1ZHT A;  1ZHX A;  2PRN A;  2Y0L A;  3KVD D;  3O0E A;  2XE2 A;  4O3Z A;  2Y0H A;  2J1N A;  4C69 X;  3VE2 A;  4AUI A;  2J4U P;  3JTY A;  2N2M A;  4XNL A;  4LSI A;  7PRN A;  1P4T A;  1GFN A;  1GFP A;  1Q9G A;  3LK4 2;  3AA1 B;  3LK2 A;  3PQS A;  5PRN A;  4AKR B;  4E1T A;  2OMF A;  1IZN B;  3K19 A;  4FSO A;  1GFM A;  3QRA A;  4FMS A;  2F1T A;  3UU2 A;  3RBH A;  3G7G A;  1YS5 A;  3HOL A;  4RL9 A;  4Z3T A;  3PQU A;  2M06 A;  3POU A;  2FGR A;  3AA6 A;  5D5D A;  5DL7 A;  1HXX A;  4AYE C;  4GCS A;  3DA4 A;  3AAA A;  4O3Y A;  3SY7 A;  2KXP B;  4B61 A;  4AYI D;  1BH3 A;  2XG6 A;  4FRT A;  4XNK A;  3VZU X;  1GFQ A;  2Y2X A;  1ZHW A;  3HW9 A;  2MHL A;  2ODJ A;  1QJ8 A;  2K4T A;  2XE1 A;  4U9C A;  2KDY A;  2Y0K A;  4AZL A;  1Q9F A;  2M07 A;  4FOZ A;  3VZT X;  3VE1 A;  3AAE B;  4FUV A;  4O3X B;  3AA7 A;  4G76 A;  2LHF A;  4D64 A;  4FT6 A;  5G26 A;  2MNH A;  3VY8 X;  3AA0 B;  3WI5 A;  1OSM A;  2XTQ A;  3DA3 A;  2W81 C;  4FZM A;  4AKR A;  3LK4 1;  4JCH A;  4FRX A;  4RJX A;  2POR A;  4BUM X;  4D5U A;  1G90 A;  1IZN A;  2KZ7 A;  5DL5 A;  1ZHY A;  4F4B A;  4AYD C;  5DL6 A;  5T5F A;  4LSH A;  3GP6 A;  4E1S A;  4FZN A;  8PRN A;  3SY9 A;  3POR A;  2YNK A;  3TZG A;  2XE3 A;  3SZV A;  2JMM A;  5FVN A;  3POX A;  1ORM A;  3HOE A;  5EE2 A;  2KXP A;  5JDP A;  2LFU A;  5DL8 A;  3UAQ A;  1BXW A;  2X27 X;  3FYX A;  3LK3 B;  4GF4 A;  3PRN A;  3T20 A;  5AFU L;  4QQ1 A;  4RLC A;  2F1V A;  4N58 A;  3SYS A;  1BT9 A;  3POQ A;  2W80 C;  1ZHZ A;  3VY9 X;  3HWB A;  3VZW X;  2K0L A;  2O4V A;  3AAA B;  1GFO A;  1PHO A;  4GHB A;  4G75 A;  4O49 A;  4KR8 A;  2ERV A;  3AA1 A;  4FES A;  1OPF A;  3A2S X;  1QJP A;  2KC0 A;  3SYB A;  4O4X A;  3V8U A;  1MM5 A;  3AA7 B;  2FGQ X;  4D65 A;  4RJW A;  3NSG A;  4FZL A;  2YPV A;  4AYN A;  4JFB A;  3LK2 B;  1HXU A;  3WI4 A;  5AFU K;  5ADX L;  1MPF A;  2XMX A;  2QTK A;  4RLB A;  4O4U A;  4PUX A;  1THQ A;  4LSF A;  4AYM C;  4FSP A;  2ZLD A;  3EMN X;  3T24 A;  2KZ7 B;  4AFK A;  4KR4 A;  5IYU A;  2ZFG A;  1H6S 1;  2GE4 A;  2XTR A;  3AA6 B;  4KRA A;  3LK3 A;  3SZD A;  5GV0 A;  3UPG A;  3AAE A;  4AKM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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