3VY8X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group p63
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
341
structure length
341
Chain Sequence
b'QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein
publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 81
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy8X00
3EMNX 4FRTA 4FSOA 2Y0KA 4GCSA 1H6S1 2XE3A 2ZLDA 2XG6A 3SY7A 3PORA 2FGQX 4D65A 4KRAA 4KR8A 5DL6A 3SYBA 1OSMA 7PRNA 4RJWA 3T0SA 6PRNA 3O0EA 3SY9A 3A2SX 3T20A 2Y0LA 1OPFA 3T24A 3HW9A 1GFQA 2PORA 5PRNA 3K19A 3VZWX 2QTKA 2Y0HA 4BUMX 4LSFA 1GFNA 4FOZA 1GFMA 4GCPA 4LSHA 1HXUA 3VY9X 2J1NA 1PHOA 2PRNA 4D64A 5DL7A 3POQA 4LSEA 2XE1A 2O4VA 2ZFGA 4GCQA 1GFOA 3WI4A 3VZTX 4C69X 5FVNA 1HXTA 2J4UP 4FMSA 2Y2XA 4KR4A 3HWBA 5JDPA 3NSGA 3POUA 2OMFA 1BH3A 8PRNA 3UPGA 4JFBA 1HXXA 3SYSA 2FGRA 3PRNA 4FSPA 3UU2A 3SZVA 2ODJA 3SZDA 3WI5A 1GFPA 4LSIA 2K4TA 3POXA 4RJXA 4D5UA 4FRXA 1BT9A 3VZUX 4AUIA 2XE2A 4FT6A 1PRNA 1E54A 5DL5A 3FYXA 3VY8X 2XE5A 1MPFA 5DL8A 3JTYA
chains in the Genus database with same CATH superfamily
1MM4A 3AA6B 3EMNX 4FRTA 2K0LA 3DWOX 1Q9FA 3A0HO 1BXWA 4FSOA 4G75A 4D64A 5B66O 2W80C 2Y0KA 1ZHTA 2WJQA 4G76A 4U9CA 2JQYA 4GCSA 4C4VA 1H6S1 2XE3A 1MM5A 2ZLDA 4JCHA 3GP6A 4AYMC 2WJRA 2KXPB 3DA4A 2XG6A 4C00A 5GV0A 3LK2A 3NJTA 1T1LA 3SY7A 1QJ9A 4F4BA 3PORA 3DA3A 1THQA 4FUVA 3TZGA 4IL6O 2Y7SA 2FGQX 2LFUA 2XMXA 2R4OA 4CTDA 4O3XB 4D65A 2KXPA 4KRAA 2MHLA 4PR7A 4KR8A 3RBHA 2X9KA 2M06A 3UAQA 4AFKA 4Z3TA 3AAAB 1G90A 3DZMA 4O3ZA 1S5LO 5DL6A 1OSMA 3AA7A 3SYBA 2XTQA 3PQUA 3HOEA 4RJWA 3T0SA 4AYDC 4XNKA 6PRNA 7PRNA 3O0EA 3LK41 3SY9A 1ZHWA 4O4UA 3JCUO 2R4PA 5IYUA 2WVPA 3A2SX 3T20A 2Y0LA 1OPFA 2KZ7B 3T24A 4AYID 5E79O 3HW9A 4AYEC 3G7GA 1GFQA 2PORA 3AA6A 5PRNA 3K19A 3VZWX 2QTKA 1Q9GA 2F1TA 3LK42 3QRAA 3WU2O 5AFUK 2N2MA 3AA1B 2Y0HA 3KZIO 4LSFA 2MNHA 4O49A 4BUMX 4E1SA 1GFNA 1T16A 4FOZA 1GFMA 3AA0B 4GCPA 4LSHA 1HXUA 4FQEA 4FZMA 3VE1A 2J1NA 1PHOA 2PRNA 2X27X 2F1VA 3A0BO 5DL7A 3POQA 3VY9X 3PGRA 4LSEA 2ERVA 2XE1A 2O4VA 2ZFGA 4GCQA 4K3CA 1QJPA 1GFOA 1ZHXA 4N59A 4GF4A 4K3BA 3WI4A 3VZTX 4C69X 5FVNA 1HXTA 3LK3B 3AA0A 1YS5A 4FMSA 2J4UP 4N58A 5G3AA 4FZLA 5G38A 5D5DA 3C5OA 2Y2XA 1IZNB 4KR4A 4RLBA 3HWBA 4AUIA 5JDPA 4N74A 3NSGA 4RL9A 3PQSA 4E1TA 5GTHO 3AAAA 4XNLA 3POUA 2OMFA 1BH3A 8PRNA 4O3YA 3UPGA 4JFBA 5AFUL 2AXTO 3BRZA 4PUXA 3V8UA 4AYNA 1HXXA 2R8AA 5B5EO 3SYSA 1ZHZA 4RLCA 4B61A 5ADXK 2FGRA 4QQ1A 3PRNA 1P4TA 2KZ7A 4FSPA 3UU2A 3DWNA 4GHBA 3SZVA 2ODJA 3HOLA 2N2LA 3SZDA 2IWWA 3WI5A 1GFPA 4N75A 4AKMA 3LK2B 4LSIA 2KC0A 2K4TA 2F1CX 3AA1A 3POXA 3AAEB 3PGUA 4AKRB 4UB8O 4RJXA 5H2FO 2M07A 4D5UA 2R88A 3PGSA 4FRXA 1BT9A 4O4XA 3VZUX 1ORMA 2XE2A 2KDYA 2LHFA 3QRCA 4FT6A 1PRNA 4O3WA 5GTIO 2XTRA 5TISO 2GE4A 2IWVA 2YNKA 2W81C 3PF1A 4AZLA 1ZHYA 2R4NA 5KAIO 2R4LA 3AAEA 3BRYA 3AA7B 3KVDD 4UB6O 5G39A 1E54A 3LK3A 3FYXA 3BS0A 4PJ0O 5DL5A 5G26A 5KAFO 2XE5A 3VY8X 4AKRA 5T5FA 5EE2A 5ADXL 2R89A 2YPVA 1IZNA 3VE2A 1MPFA 1QJ8A 4C4VB 4FESA 2JMMA 4FZNA 5DL8A 3JTYA
chains in the Genus database with same CATH topology
1MM4A 3AA6B 3EMNX 4FRTA 2K0LA 1Q9FA 4FSOA 1BXWA 4G75A 2W80C 2Y0KA 1ZHTA 4G76A 4U9CA 4GCSA 1H6S1 2XE3A 1MM5A 2ZLDA 4JCHA 3GP6A 4AYMC 2KXPB 3DA4A 2XG6A 5GV0A 3LK2A 3SY7A 1QJ9A 4F4BA 3PORA 3DA3A 1THQA 4FUVA 3TZGA 2Y7SA 2FGQX 2LFUA 2XMXA 4O3XB 4D65A 2KXPA 4KRAA 2MHLA 4KR8A 3RBHA 2M06A 3UAQA 4AFKA 4Z3TA 3AAAB 1G90A 4O3ZA 5DL6A 3SYBA 1OSMA 3AA7A 2XTQA 3PQUA 3HOEA 4RJWA 3T0SA 4AYDC 4XNKA 6PRNA 7PRNA 3O0EA 3LK41 3SY9A 1ZHWA 4O4UA 5IYUA 3A2SX 3T20A 2Y0LA 1OPFA 2KZ7B 3T24A 4AYID 3HW9A 4AYEC 3G7GA 1GFQA 2PORA 3AA6A 5PRNA 3K19A 3VZWX 2QTKA 1Q9GA 2F1TA 3LK42 3QRAA 5AFUK 2N2MA 3AA1B 2Y0HA 4BUMX 4LSFA 2MNHA 4O49A 4E1SA 1GFNA 4FOZA 1GFMA 3AA0B 4GCPA 4LSHA 1HXUA 4FZMA 3VY9X 2J1NA 1PHOA 2PRNA 2X27X 2F1VA 4D64A 5DL7A 3POQA 4LSEA 2ERVA 2XE1A 2O4VA 2ZFGA 4GCQA 1QJPA 1GFOA 1ZHXA 4N59A 4GF4A 3WI4A 3VZTX 4C69X 5FVNA 1HXTA 3LK3B 3AA0A 1YS5A 4FMSA 2J4UP 4N58A 4FZLA 5D5DA 3C5OA 2Y2XA 1IZNB 4KR4A 4RLBA 3HWBA 5JDPA 3NSGA 4RL9A 3PQSA 4E1TA 3AAAA 4XNLA 3POUA 2OMFA 1BH3A 8PRNA 4O3YA 3UPGA 4JFBA 5AFUL 4PUXA 3V8UA 4AYNA 1HXXA 5ADXK 3SYSA 1ZHZA 4RLCA 4B61A 2FGRA 4QQ1A 3PRNA 1P4TA 2KZ7A 4FSPA 3UU2A 4GHBA 3SZVA 2ODJA 3HOLA 2N2LA 3SZDA 3WI5A 1GFPA 4AKMA 3LK2B 4LSIA 2KC0A 2K4TA 3AA1A 3POXA 3AAEB 4AKRB 4RJXA 2M07A 4D5UA 4FRXA 1BT9A 4O4XA 3VZUX 1ORMA 2XE2A 2KDYA 2LHFA 3QRCA 4FT6A 1PRNA 4O3WA 4AUIA 2XTRA 2GE4A 2YNKA 4AZLA 2W81C 1ZHYA 3AAEA 4AKRA 3AA7B 3KVDD 3VE1A 1E54A 3LK3A 3FYXA 5DL5A 5G26A 3VY8X 2XE5A 5T5FA 5EE2A 5ADXL 2YPVA 1IZNA 3VE2A 1MPFA 1QJ8A 4FESA 2JMMA 4FZNA 5DL8A 3JTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EMN X;  4FRT A;  4FSO A;  2Y0K A;  4GCS A;  1H6S 1;  2XE3 A;  2ZLD A;  2XG6 A;  3SY7 A;  3POR A;  2FGQ X;  4D65 A;  4KRA A;  4KR8 A;  5DL6 A;  3SYB A;  1OSM A;  7PRN A;  4RJW A;  3T0S A;  6PRN A;  3O0E A;  3SY9 A;  3A2S X;  3T20 A;  2Y0L A;  1OPF A;  3T24 A;  3HW9 A;  1GFQ A;  2POR A;  5PRN A;  3K19 A;  3VZW X;  2QTK A;  2Y0H A;  4BUM X;  4LSF A;  1GFN A;  4FOZ A;  1GFM A;  4GCP A;  4LSH A;  1HXU A;  3VY9 X;  2J1N A;  1PHO A;  2PRN A;  4D64 A;  5DL7 A;  3POQ A;  4LSE A;  2XE1 A;  2O4V A;  2ZFG A;  4GCQ A;  1GFO A;  3WI4 A;  3VZT X;  4C69 X;  5FVN A;  1HXT A;  2J4U P;  4FMS A;  2Y2X A;  4KR4 A;  3HWB A;  5JDP A;  3NSG A;  3POU A;  2OMF A;  1BH3 A;  8PRN A;  3UPG A;  4JFB A;  1HXX A;  3SYS A;  2FGR A;  3PRN A;  4FSP A;  3UU2 A;  3SZV A;  2ODJ A;  3SZD A;  3WI5 A;  1GFP A;  4LSI A;  2K4T A;  3POX A;  4RJX A;  4D5U A;  4FRX A;  1BT9 A;  3VZU X;  4AUI A;  2XE2 A;  4FT6 A;  1PRN A;  1E54 A;  5DL5 A;  3FYX A;  3VY8 X;  2XE5 A;  1MPF A;  5DL8 A;  3JTY A; 
#chains in the Genus database with same CATH topology
 1MM4 A;  3AA6 B;  3EMN X;  4FRT A;  2K0L A;  3DWO X;  1Q9F A;  3A0H O;  1BXW A;  4FSO A;  4G75 A;  4D64 A;  5B66 O;  2W80 C;  2Y0K A;  1ZHT A;  2WJQ A;  4G76 A;  4U9C A;  2JQY A;  4GCS A;  4C4V A;  1H6S 1;  2XE3 A;  1MM5 A;  2ZLD A;  4JCH A;  3GP6 A;  4AYM C;  2WJR A;  2KXP B;  3DA4 A;  2XG6 A;  4C00 A;  5GV0 A;  3LK2 A;  3NJT A;  1T1L A;  3SY7 A;  1QJ9 A;  4F4B A;  3POR A;  3DA3 A;  1THQ A;  4FUV A;  3TZG A;  4IL6 O;  2Y7S A;  2FGQ X;  2LFU A;  2XMX A;  2R4O A;  4CTD A;  4O3X B;  4D65 A;  2KXP A;  4KRA A;  2MHL A;  4PR7 A;  4KR8 A;  3RBH A;  2X9K A;  2M06 A;  3UAQ A;  4AFK A;  4Z3T A;  3AAA B;  1G90 A;  3DZM A;  4O3Z A;  1S5L O;  5DL6 A;  1OSM A;  3AA7 A;  3SYB A;  2XTQ A;  3PQU A;  3HOE A;  4RJW A;  3T0S A;  4AYD C;  4XNK A;  6PRN A;  7PRN A;  3O0E A;  3LK4 1;  3SY9 A;  1ZHW A;  4O4U A;  3JCU O;  2R4P A;  5IYU A;  2WVP A;  3A2S X;  3T20 A;  2Y0L A;  1OPF A;  2KZ7 B;  3T24 A;  4AYI D;  5E79 O;  3HW9 A;  4AYE C;  3G7G A;  1GFQ A;  2POR A;  3AA6 A;  5PRN A;  3K19 A;  3VZW X;  2QTK A;  1Q9G A;  2F1T A;  3LK4 2;  3QRA A;  3WU2 O;  5AFU K;  2N2M A;  3AA1 B;  2Y0H A;  3KZI O;  4LSF A;  2MNH A;  4O49 A;  4BUM X;  4E1S A;  1GFN A;  1T16 A;  4FOZ A;  1GFM A;  3AA0 B;  4GCP A;  4LSH A;  1HXU A;  4FQE A;  4FZM A;  3VE1 A;  2J1N A;  1PHO A;  2PRN A;  2X27 X;  2F1V A;  3A0B O;  5DL7 A;  3POQ A;  3VY9 X;  3PGR A;  4LSE A;  2ERV A;  2XE1 A;  2O4V A;  2ZFG A;  4GCQ A;  4K3C A;  1QJP A;  1GFO A;  1ZHX A;  4N59 A;  4GF4 A;  4K3B A;  3WI4 A;  3VZT X;  4C69 X;  5FVN A;  1HXT A;  3LK3 B;  3AA0 A;  1YS5 A;  4FMS A;  2J4U P;  4N58 A;  5G3A A;  4FZL A;  5G38 A;  5D5D A;  3C5O A;  2Y2X A;  1IZN B;  4KR4 A;  4RLB A;  3HWB A;  4AUI A;  5JDP A;  4N74 A;  3NSG A;  4RL9 A;  3PQS A;  4E1T A;  5GTH O;  3AAA A;  4XNL A;  3POU A;  2OMF A;  1BH3 A;  8PRN A;  4O3Y A;  3UPG A;  4JFB A;  5AFU L;  2AXT O;  3BRZ A;  4PUX A;  3V8U A;  4AYN A;  1HXX A;  2R8A A;  5B5E O;  3SYS A;  1ZHZ A;  4RLC A;  4B61 A;  5ADX K;  2FGR A;  4QQ1 A;  3PRN A;  1P4T A;  2KZ7 A;  4FSP A;  3UU2 A;  3DWN A;  4GHB A;  3SZV A;  2ODJ A;  3HOL A;  2N2L A;  3SZD A;  2IWW A;  3WI5 A;  1GFP A;  4N75 A;  4AKM A;  3LK2 B;  4LSI A;  2KC0 A;  2K4T A;  2F1C X;  3AA1 A;  3POX A;  3AAE B;  3PGU A;  4AKR B;  4UB8 O;  4RJX A;  5H2F O;  2M07 A;  4D5U A;  2R88 A;  3PGS A;  4FRX A;  1BT9 A;  4O4X A;  3VZU X;  1ORM A;  2XE2 A;  2KDY A;  2LHF A;  3QRC A;  4FT6 A;  1PRN A;  4O3W A;  5GTI O;  2XTR A;  5TIS O;  2GE4 A;  2IWV A;  2YNK A;  2W81 C;  3PF1 A;  4AZL A;  1ZHY A;  2R4N A;  5KAI O;  2R4L A;  3AAE A;  3BRY A;  3AA7 B;  3KVD D;  4UB6 O;  5G39 A;  1E54 A;  3LK3 A;  3FYX A;  3BS0 A;  4PJ0 O;  5DL5 A;  5G26 A;  5KAF O;  2XE5 A;  3VY8 X;  4AKR A;  5T5F A;  5EE2 A;  5ADX L;  2R89 A;  2YPV A;  1IZN A;  3VE2 A;  1MPF A;  1QJ8 A;  4C4V B;  4FES A;  2JMM A;  4FZN A;  5DL8 A;  3JTY A; 
#chains in the Genus database with same CATH homology
 1MM4 A;  3AA6 B;  3EMN X;  4FRT A;  2K0L A;  1Q9F A;  4FSO A;  1BXW A;  4G75 A;  2W80 C;  2Y0K A;  1ZHT A;  4G76 A;  4U9C A;  4GCS A;  1H6S 1;  2XE3 A;  1MM5 A;  2ZLD A;  4JCH A;  3GP6 A;  4AYM C;  2KXP B;  3DA4 A;  2XG6 A;  5GV0 A;  3LK2 A;  3SY7 A;  1QJ9 A;  4F4B A;  3POR A;  3DA3 A;  1THQ A;  4FUV A;  3TZG A;  2Y7S A;  2FGQ X;  2LFU A;  2XMX A;  4O3X B;  4D65 A;  2KXP A;  4KRA A;  2MHL A;  4KR8 A;  3RBH A;  2M06 A;  3UAQ A;  4AFK A;  4Z3T A;  3AAA B;  1G90 A;  4O3Z A;  5DL6 A;  3SYB A;  1OSM A;  3AA7 A;  2XTQ A;  3PQU A;  3HOE A;  4RJW A;  3T0S A;  4AYD C;  4XNK A;  6PRN A;  7PRN A;  3O0E A;  3LK4 1;  3SY9 A;  1ZHW A;  4O4U A;  5IYU A;  3A2S X;  3T20 A;  2Y0L A;  1OPF A;  2KZ7 B;  3T24 A;  4AYI D;  3HW9 A;  4AYE C;  3G7G A;  1GFQ A;  2POR A;  3AA6 A;  5PRN A;  3K19 A;  3VZW X;  2QTK A;  1Q9G A;  2F1T A;  3LK4 2;  3QRA A;  5AFU K;  2N2M A;  3AA1 B;  2Y0H A;  4BUM X;  4LSF A;  2MNH A;  4O49 A;  4E1S A;  1GFN A;  4FOZ A;  1GFM A;  3AA0 B;  4GCP A;  4LSH A;  1HXU A;  4FZM A;  3VY9 X;  2J1N A;  1PHO A;  2PRN A;  2X27 X;  2F1V A;  4D64 A;  5DL7 A;  3POQ A;  4LSE A;  2ERV A;  2XE1 A;  2O4V A;  2ZFG A;  4GCQ A;  1QJP A;  1GFO A;  1ZHX A;  4N59 A;  4GF4 A;  3WI4 A;  3VZT X;  4C69 X;  5FVN A;  1HXT A;  3LK3 B;  3AA0 A;  1YS5 A;  4FMS A;  2J4U P;  4N58 A;  4FZL A;  5D5D A;  3C5O A;  2Y2X A;  1IZN B;  4KR4 A;  4RLB A;  3HWB A;  5JDP A;  3NSG A;  4RL9 A;  3PQS A;  4E1T A;  3AAA A;  4XNL A;  3POU A;  2OMF A;  1BH3 A;  8PRN A;  4O3Y A;  3UPG A;  4JFB A;  5AFU L;  4PUX A;  3V8U A;  4AYN A;  1HXX A;  5ADX K;  3SYS A;  1ZHZ A;  4RLC A;  4B61 A;  2FGR A;  4QQ1 A;  3PRN A;  1P4T A;  2KZ7 A;  4FSP A;  3UU2 A;  4GHB A;  3SZV A;  2ODJ A;  3HOL A;  2N2L A;  3SZD A;  3WI5 A;  1GFP A;  4AKM A;  3LK2 B;  4LSI A;  2KC0 A;  2K4T A;  3AA1 A;  3POX A;  3AAE B;  4AKR B;  4RJX A;  2M07 A;  4D5U A;  4FRX A;  1BT9 A;  4O4X A;  3VZU X;  1ORM A;  2XE2 A;  2KDY A;  2LHF A;  3QRC A;  4FT6 A;  1PRN A;  4O3W A;  4AUI A;  2XTR A;  2GE4 A;  2YNK A;  4AZL A;  2W81 C;  1ZHY A;  3AAE A;  4AKR A;  3AA7 B;  3KVD D;  3VE1 A;  1E54 A;  3LK3 A;  3FYX A;  5DL5 A;  5G26 A;  3VY8 X;  2XE5 A;  5T5F A;  5EE2 A;  5ADX L;  2YPV A;  1IZN A;  3VE2 A;  1MPF A;  1QJ8 A;  4FES A;  2JMM A;  4FZN A;  5DL8 A;  3JTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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