3VY8X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group p63
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein
publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 81
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy8X00
1GFOA 1PRNA 4LSIA 2ODJA 4D5UA 1GFQA 2Y0HA 1BH3A 3SZDA 4FSOA 3HW9A 3PRNA 2K4TA 5JDPA 3FYXA 3WI4A 4D65A 5DL6A 4RJXA 3SY9A 3JTYA 4GCQA 4KR8A 2XE5A 4GCSA 3UPGA 1OSMA 2O4VA 4LSFA 1E54A 4KR4A 4BUMX 6PRNA 3NSGA 3K19A 2Y0LA 2PRNA 1BT9A 3WI5A 3SYSA 3T24A 3SY7A 2FGRA 3PORA 1GFMA 4KRAA 7PRNA 2XE3A 2XE2A 5DL5A 4GCPA 4JFBA 3VZWX 4FT6A 1H6S1 3SZVA 1GFNA 4AUIA 1MPFA 3SYBA 2QTKA 4LSHA 2ZFGA 1HXXA 3VY9X 1HXTA 1PHOA 1OPFA 3T20A 1HXUA 2ZLDA 2J1NA 4FRTA 5DL8A 3T0SA 4FSPA 3POUA 3VZUX 3VZTX 2Y2XA 1GFPA 5DL7A 2FGQX 4RJWA 4D64A 4FRXA 5FVNA 3VY8X 3EMNX 4FMSA 3UU2A 4FOZA 8PRNA 3A2SX 5PRNA 2PORA 2J4UP 3POXA 3POQA 2Y0KA 3HWBA 2OMFA 2XG6A 2XE1A 4LSEA 3O0EA 4C69X
chains in the Genus database with same CATH superfamily
5H2FO 2AXTO 1GFOA 1PRNA 3AA7B 3GP6A 4LSIA 2ODJA 1ZHXA 3HOEA 2LFUA 4D5UA 1QJ9A 1Q9GA 1P4TA 1GFQA 1THQA 3AA1B 3LK41 2R4PA 3DWOX 2Y0HA 1BH3A 3SZDA 4AYNA 2WJRA 3C5OA 3PGRA 1BXWA 4IL6O 3VE2A 4FSOA 2K0LA 3HW9A 4K3CA 5KAFO 2R88A 3PRNA 2K4TA 4GHBA 2YPVA 4FZMA 3FYXA 3WI4A 4D65A 5JDPA 5DL6A 4RJXA 1ZHYA 3SY9A 3WU2O 5AFUK 4PR7A 3JTYA 4GCQA 4KR8A 2XE5A 1ORMA 4C00A 5ADXL 4Z3TA 2JMMA 4GCSA 2IWWA 4N59A 3LK3B 1OSMA 2O4VA 3UPGA 1IZNB 2X27X 3V8UA 4G75A 4F4BA 3AA6A 4LSFA 1E54A 2MHLA 2R4OA 4KR4A 4O49A 4BUMX 6PRNA 3NSGA 3K19A 1T16A 3G7GA 2Y0LA 4AKRB 2WVPA 4UB8O 2PRNA 1BT9A 3PQUA 2F1TA 5TISO 3WI5A 3SYSA 1MM4A 2XMXA 5G26A 5KAIO 5ADXK 4N74A 3T24A 3PQSA 4AYDC 5AFUL 3AAAA 3SY7A 2FGRA 3PORA 1GFMA 2KZ7B 4AYMC 4O3YA 4KRAA 2W81C 3NJTA 4AKMA 7PRNA 3AA1A 3LK2B 2KDYA 4JCHA 4O3ZA 3KVDD 4O4UA 3AA0B 2M07A 2XE3A 2XTRA 5GTHO 2XE2A 1S5LO 3VE1A 3RBHA 5DL5A 4PUXA 4XNKA 4GCPA 4FESA 4JFBA 3VZWX 2R4LA 3BRYA 4FT6A 1H6S1 3JCUO 3SZVA 1GFNA 2YNKA 3LK3A 4FZNA 3UAQA 4AUIA 1IZNA 1G90A 5G38A 3LK42 1MPFA 4C4VA 4E1SA 3SYBA 2QTKA 3AAEB 4LSHA 4RL9A 2KXPB 2N2LA 2R89A 4G76A 2ZFGA 5IYUA 4AKRA 3AA7A 2Y7SA 4O3XB 5E79O 5D5DA 4AFKA 5GV0A 3PF1A 1ZHWA 1HXXA 3VY9X 1HXTA 1PHOA 1OPFA 1QJ8A 3T20A 1HXUA 2ZLDA 4AYID 4CTDA 4RLCA 2J1NA 4FRTA 5DL8A 3T0SA 2R8AA 3A0HO 4FSPA 4E1TA 2KZ7A 3POUA 4O3WA 1Q9FA 4XNLA 3VZUX 5B5EO 4B61A 3VZTX 3HOLA 4K3BA 3LK2A 3PGUA 2Y2XA 2N2MA 1GFPA 2JQYA 5DL7A 2F1VA 2FGQX 3AA0A 3AAAB 4RJWA 5EE2A 3DZMA 5G3AA 4AZLA 2R4NA 4FQEA 4D64A 3KZIO 1ZHZA 4FRXA 2W80C 4GF4A 3DA4A 2WJQA 1QJPA 3QRAA 5FVNA 5T5FA 3VY8X 3EMNX 5GTIO 4FMSA 4PJ0O 3UU2A 4FOZA 4AYEC 3A2SX 8PRNA 4U9CA 3BRZA 1T1LA 5PRNA 4FZLA 3DA3A 4FUVA 2IWVA 2PORA 2J4UP 3DWNA 2GE4A 3QRCA 4QQ1A 3POXA 3POQA 2Y0KA 3HWBA 2LHFA 2ERVA 3AAEA 4UB6O 3AA6B 2KXPA 2X9KA 3TZGA 2F1CX 2OMFA 2XG6A 4RLBA 2KC0A 2MNHA 4O4XA 2M06A 3A0BO 3PGSA 4N75A 2XE1A 2XTQA 1MM5A 1ZHTA 3BS0A 5B66O 1YS5A 4LSEA 4N58A 5G39A 3O0EA 4C4VB 4C69X
chains in the Genus database with same CATH topology
1GFOA 1PRNA 3AA7B 3GP6A 4LSIA 2ODJA 1ZHXA 3HOEA 2LFUA 4D5UA 1QJ9A 1Q9GA 1P4TA 1GFQA 1THQA 3AA1B 3LK41 2Y0HA 1BH3A 3SZDA 4AYNA 3C5OA 1BXWA 3VE2A 4FSOA 2K0LA 3HW9A 3PRNA 2K4TA 4GHBA 2YPVA 4FZMA 3FYXA 3WI4A 4D65A 5JDPA 5DL6A 4RJXA 1ZHYA 3SY9A 5AFUK 3JTYA 4GCQA 4KR8A 2XE5A 1ORMA 5ADXL 4Z3TA 2JMMA 4GCSA 3UPGA 4N59A 3LK3B 1OSMA 2O4VA 1IZNB 2X27X 3V8UA 4G75A 4F4BA 3AA6A 4LSFA 1E54A 2MHLA 4KR4A 4BUMX 4O49A 6PRNA 3NSGA 3K19A 3G7GA 2Y0LA 4AKRB 2PRNA 1BT9A 3PQUA 2F1TA 3WI5A 3SYSA 1MM4A 2XMXA 5G26A 5ADXK 3T24A 3PQSA 4AYDC 5AFUL 3AAAA 3SY7A 2FGRA 3PORA 1GFMA 2KZ7B 4AYMC 4O3YA 4KRAA 2W81C 4AKMA 7PRNA 3AA1A 3LK2B 2KDYA 4JCHA 4O3ZA 3KVDD 4O4UA 3AA0B 2M07A 2XE3A 2XTRA 2XE2A 3VE1A 3RBHA 5DL5A 4PUXA 4XNKA 4GCPA 4FESA 4JFBA 3VZWX 4FT6A 1H6S1 3UAQA 3SZVA 1GFNA 2YNKA 3LK3A 4FZNA 4AUIA 1G90A 1IZNA 4E1SA 3LK42 1MPFA 3SYBA 2QTKA 3AAEB 4LSHA 4RL9A 2KXPB 2N2LA 4G76A 2ZFGA 5IYUA 4AKRA 3AA7A 2Y7SA 4O3XB 4AFKA 5D5DA 5GV0A 1ZHWA 1HXXA 3VY9X 1HXTA 1PHOA 1OPFA 1QJ8A 3T20A 1HXUA 2ZLDA 4AYID 4RLCA 2J1NA 4FRTA 5DL8A 3T0SA 4E1TA 4FSPA 2KZ7A 3POUA 4O3WA 1Q9FA 4XNLA 3VZUX 4B61A 3VZTX 3HOLA 3LK2A 2Y2XA 2N2MA 1GFPA 5DL7A 2F1VA 2FGQX 3AA0A 3AAAB 4RJWA 5EE2A 4AZLA 4D64A 1ZHZA 4FRXA 2W80C 4GF4A 3DA4A 1QJPA 3QRAA 5FVNA 5T5FA 3VY8X 3EMNX 4FMSA 3UU2A 4FOZA 4AYEC 3A2SX 8PRNA 4U9CA 5PRNA 4FZLA 3DA3A 4FUVA 2PORA 2J4UP 3QRCA 2GE4A 4QQ1A 3POXA 3POQA 2Y0KA 3HWBA 2LHFA 2ERVA 3AAEA 3TZGA 3AA6B 2KXPA 2OMFA 2XG6A 4RLBA 2KC0A 2MNHA 4O4XA 2M06A 2XE1A 2XTQA 1MM5A 1ZHTA 1YS5A 4LSEA 4N58A 3O0EA 4C69X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GFO A;  1PRN A;  4LSI A;  2ODJ A;  4D5U A;  1GFQ A;  2Y0H A;  1BH3 A;  3SZD A;  4FSO A;  3HW9 A;  3PRN A;  2K4T A;  5JDP A;  3FYX A;  3WI4 A;  4D65 A;  5DL6 A;  4RJX A;  3SY9 A;  3JTY A;  4GCQ A;  4KR8 A;  2XE5 A;  4GCS A;  3UPG A;  1OSM A;  2O4V A;  4LSF A;  1E54 A;  4KR4 A;  4BUM X;  6PRN A;  3NSG A;  3K19 A;  2Y0L A;  2PRN A;  1BT9 A;  3WI5 A;  3SYS A;  3T24 A;  3SY7 A;  2FGR A;  3POR A;  1GFM A;  4KRA A;  7PRN A;  2XE3 A;  2XE2 A;  5DL5 A;  4GCP A;  4JFB A;  3VZW X;  4FT6 A;  1H6S 1;  3SZV A;  1GFN A;  4AUI A;  1MPF A;  3SYB A;  2QTK A;  4LSH A;  2ZFG A;  1HXX A;  3VY9 X;  1HXT A;  1PHO A;  1OPF A;  3T20 A;  1HXU A;  2ZLD A;  2J1N A;  4FRT A;  5DL8 A;  3T0S A;  4FSP A;  3POU A;  3VZU X;  3VZT X;  2Y2X A;  1GFP A;  5DL7 A;  2FGQ X;  4RJW A;  4D64 A;  4FRX A;  5FVN A;  3VY8 X;  3EMN X;  4FMS A;  3UU2 A;  4FOZ A;  8PRN A;  3A2S X;  5PRN A;  2POR A;  2J4U P;  3POX A;  3POQ A;  2Y0K A;  3HWB A;  2OMF A;  2XG6 A;  2XE1 A;  4LSE A;  3O0E A;  4C69 X; 
#chains in the Genus database with same CATH topology
 5H2F O;  2AXT O;  1GFO A;  1PRN A;  3AA7 B;  3GP6 A;  4LSI A;  2ODJ A;  1ZHX A;  3HOE A;  2LFU A;  4D5U A;  1QJ9 A;  1Q9G A;  1P4T A;  1GFQ A;  1THQ A;  3AA1 B;  3LK4 1;  2R4P A;  3DWO X;  2Y0H A;  1BH3 A;  3SZD A;  4AYN A;  2WJR A;  3C5O A;  3PGR A;  1BXW A;  4IL6 O;  3VE2 A;  4FSO A;  2K0L A;  3HW9 A;  4K3C A;  5KAF O;  2R88 A;  3PRN A;  2K4T A;  4GHB A;  2YPV A;  4FZM A;  3FYX A;  3WI4 A;  4D65 A;  5JDP A;  5DL6 A;  4RJX A;  1ZHY A;  3SY9 A;  3WU2 O;  5AFU K;  4PR7 A;  3JTY A;  4GCQ A;  4KR8 A;  2XE5 A;  1ORM A;  4C00 A;  5ADX L;  4Z3T A;  2JMM A;  4GCS A;  2IWW A;  4N59 A;  3LK3 B;  1OSM A;  2O4V A;  3UPG A;  1IZN B;  2X27 X;  3V8U A;  4G75 A;  4F4B A;  3AA6 A;  4LSF A;  1E54 A;  2MHL A;  2R4O A;  4KR4 A;  4O49 A;  4BUM X;  6PRN A;  3NSG A;  3K19 A;  1T16 A;  3G7G A;  2Y0L A;  4AKR B;  2WVP A;  4UB8 O;  2PRN A;  1BT9 A;  3PQU A;  2F1T A;  5TIS O;  3WI5 A;  3SYS A;  1MM4 A;  2XMX A;  5G26 A;  5KAI O;  5ADX K;  4N74 A;  3T24 A;  3PQS A;  4AYD C;  5AFU L;  3AAA A;  3SY7 A;  2FGR A;  3POR A;  1GFM A;  2KZ7 B;  4AYM C;  4O3Y A;  4KRA A;  2W81 C;  3NJT A;  4AKM A;  7PRN A;  3AA1 A;  3LK2 B;  2KDY A;  4JCH A;  4O3Z A;  3KVD D;  4O4U A;  3AA0 B;  2M07 A;  2XE3 A;  2XTR A;  5GTH O;  2XE2 A;  1S5L O;  3VE1 A;  3RBH A;  5DL5 A;  4PUX A;  4XNK A;  4GCP A;  4FES A;  4JFB A;  3VZW X;  2R4L A;  3BRY A;  4FT6 A;  1H6S 1;  3JCU O;  3SZV A;  1GFN A;  2YNK A;  3LK3 A;  4FZN A;  3UAQ A;  4AUI A;  1IZN A;  1G90 A;  5G38 A;  3LK4 2;  1MPF A;  4C4V A;  4E1S A;  3SYB A;  2QTK A;  3AAE B;  4LSH A;  4RL9 A;  2KXP B;  2N2L A;  2R89 A;  4G76 A;  2ZFG A;  5IYU A;  4AKR A;  3AA7 A;  2Y7S A;  4O3X B;  5E79 O;  5D5D A;  4AFK A;  5GV0 A;  3PF1 A;  1ZHW A;  1HXX A;  3VY9 X;  1HXT A;  1PHO A;  1OPF A;  1QJ8 A;  3T20 A;  1HXU A;  2ZLD A;  4AYI D;  4CTD A;  4RLC A;  2J1N A;  4FRT A;  5DL8 A;  3T0S A;  2R8A A;  3A0H O;  4FSP A;  4E1T A;  2KZ7 A;  3POU A;  4O3W A;  1Q9F A;  4XNL A;  3VZU X;  5B5E O;  4B61 A;  3VZT X;  3HOL A;  4K3B A;  3LK2 A;  3PGU A;  2Y2X A;  2N2M A;  1GFP A;  2JQY A;  5DL7 A;  2F1V A;  2FGQ X;  3AA0 A;  3AAA B;  4RJW A;  5EE2 A;  3DZM A;  5G3A A;  4AZL A;  2R4N A;  4FQE A;  4D64 A;  3KZI O;  1ZHZ A;  4FRX A;  2W80 C;  4GF4 A;  3DA4 A;  2WJQ A;  1QJP A;  3QRA A;  5FVN A;  5T5F A;  3VY8 X;  3EMN X;  5GTI O;  4FMS A;  4PJ0 O;  3UU2 A;  4FOZ A;  4AYE C;  3A2S X;  8PRN A;  4U9C A;  3BRZ A;  1T1L A;  5PRN A;  4FZL A;  3DA3 A;  4FUV A;  2IWV A;  2POR A;  2J4U P;  3DWN A;  2GE4 A;  3QRC A;  4QQ1 A;  3POX A;  3POQ A;  2Y0K A;  3HWB A;  2LHF A;  2ERV A;  3AAE A;  4UB6 O;  3AA6 B;  2KXP A;  2X9K A;  3TZG A;  2F1C X;  2OMF A;  2XG6 A;  4RLB A;  2KC0 A;  2MNH A;  4O4X A;  2M06 A;  3A0B O;  3PGS A;  4N75 A;  2XE1 A;  2XTQ A;  1MM5 A;  1ZHT A;  3BS0 A;  5B66 O;  1YS5 A;  4LSE A;  4N58 A;  5G39 A;  3O0E A;  4C4V B;  4C69 X; 
#chains in the Genus database with same CATH homology
 1GFO A;  1PRN A;  3AA7 B;  3GP6 A;  4LSI A;  2ODJ A;  1ZHX A;  3HOE A;  2LFU A;  4D5U A;  1QJ9 A;  1Q9G A;  1P4T A;  1GFQ A;  1THQ A;  3AA1 B;  3LK4 1;  2Y0H A;  1BH3 A;  3SZD A;  4AYN A;  3C5O A;  1BXW A;  3VE2 A;  4FSO A;  2K0L A;  3HW9 A;  3PRN A;  2K4T A;  4GHB A;  2YPV A;  4FZM A;  3FYX A;  3WI4 A;  4D65 A;  5JDP A;  5DL6 A;  4RJX A;  1ZHY A;  3SY9 A;  5AFU K;  3JTY A;  4GCQ A;  4KR8 A;  2XE5 A;  1ORM A;  5ADX L;  4Z3T A;  2JMM A;  4GCS A;  3UPG A;  4N59 A;  3LK3 B;  1OSM A;  2O4V A;  1IZN B;  2X27 X;  3V8U A;  4G75 A;  4F4B A;  3AA6 A;  4LSF A;  1E54 A;  2MHL A;  4KR4 A;  4BUM X;  4O49 A;  6PRN A;  3NSG A;  3K19 A;  3G7G A;  2Y0L A;  4AKR B;  2PRN A;  1BT9 A;  3PQU A;  2F1T A;  3WI5 A;  3SYS A;  1MM4 A;  2XMX A;  5G26 A;  5ADX K;  3T24 A;  3PQS A;  4AYD C;  5AFU L;  3AAA A;  3SY7 A;  2FGR A;  3POR A;  1GFM A;  2KZ7 B;  4AYM C;  4O3Y A;  4KRA A;  2W81 C;  4AKM A;  7PRN A;  3AA1 A;  3LK2 B;  2KDY A;  4JCH A;  4O3Z A;  3KVD D;  4O4U A;  3AA0 B;  2M07 A;  2XE3 A;  2XTR A;  2XE2 A;  3VE1 A;  3RBH A;  5DL5 A;  4PUX A;  4XNK A;  4GCP A;  4FES A;  4JFB A;  3VZW X;  4FT6 A;  1H6S 1;  3UAQ A;  3SZV A;  1GFN A;  2YNK A;  3LK3 A;  4FZN A;  4AUI A;  1G90 A;  1IZN A;  4E1S A;  3LK4 2;  1MPF A;  3SYB A;  2QTK A;  3AAE B;  4LSH A;  4RL9 A;  2KXP B;  2N2L A;  4G76 A;  2ZFG A;  5IYU A;  4AKR A;  3AA7 A;  2Y7S A;  4O3X B;  4AFK A;  5D5D A;  5GV0 A;  1ZHW A;  1HXX A;  3VY9 X;  1HXT A;  1PHO A;  1OPF A;  1QJ8 A;  3T20 A;  1HXU A;  2ZLD A;  4AYI D;  4RLC A;  2J1N A;  4FRT A;  5DL8 A;  3T0S A;  4E1T A;  4FSP A;  2KZ7 A;  3POU A;  4O3W A;  1Q9F A;  4XNL A;  3VZU X;  4B61 A;  3VZT X;  3HOL A;  3LK2 A;  2Y2X A;  2N2M A;  1GFP A;  5DL7 A;  2F1V A;  2FGQ X;  3AA0 A;  3AAA B;  4RJW A;  5EE2 A;  4AZL A;  4D64 A;  1ZHZ A;  4FRX A;  2W80 C;  4GF4 A;  3DA4 A;  1QJP A;  3QRA A;  5FVN A;  5T5F A;  3VY8 X;  3EMN X;  4FMS A;  3UU2 A;  4FOZ A;  4AYE C;  3A2S X;  8PRN A;  4U9C A;  5PRN A;  4FZL A;  3DA3 A;  4FUV A;  2POR A;  2J4U P;  3QRC A;  2GE4 A;  4QQ1 A;  3POX A;  3POQ A;  2Y0K A;  3HWB A;  2LHF A;  2ERV A;  3AAE A;  3TZG A;  3AA6 B;  2KXP A;  2OMF A;  2XG6 A;  4RLB A;  2KC0 A;  2MNH A;  4O4X A;  2M06 A;  2XE1 A;  2XTQ A;  1MM5 A;  1ZHT A;  1YS5 A;  4LSE A;  4N58 A;  3O0E A;  4C69 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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