3VY8X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group p63
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein
publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 81
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy8X00
2XE3A 8PRNA 2Y0HA 1E54A 3T20A 3SYSA 3EMNX 4KR8A 4LSHA 3FYXA 1PRNA 4KRAA 1PHOA 1HXTA 2J4UP 4BUMX 2ZLDA 1GFPA 2Y0LA 2XE5A 4D5UA 2XE2A 4FOZA 3PORA 3HWBA 2Y2XA 1GFQA 3UPGA 4FSOA 5FVNA 2OMFA 1GFNA 1MPFA 3WI4A 3VY9X 1GFMA 2PRNA 3VZUX 3NSGA 2ODJA 3POQA 5DL6A 4JFBA 4GCPA 2Y0KA 3POUA 2PORA 1BT9A 4GCSA 4LSEA 4KR4A 4FRXA 2XG6A 3UU2A 3SYBA 3HW9A 3O0EA 4AUIA 4FT6A 2ZFGA 4RJWA 3SZDA 4LSFA 1GFOA 4FMSA 4LSIA 5DL7A 3VZWX 1OSMA 4C69X 3T24A 3SY7A 3WI5A 3JTYA 4RJXA 3VY8X 5JDPA 3POXA 3A2SX 4D65A 2J1NA 4D64A 1HXUA 5DL5A 5PRNA 3T0SA 1H6S1 2QTKA 1HXXA 6PRNA 1BH3A 2FGQX 2K4TA 4FSPA 1OPFA 3K19A 5DL8A 3PRNA 4GCQA 3SZVA 2O4VA 4FRTA 3VZTX 3SY9A 7PRNA 2XE1A 2FGRA
chains in the Genus database with same CATH superfamily
2XE3A 4F4BA 4E1TA 8PRNA 3LK3B 2Y0HA 4RLBA 2F1CX 3AA0A 1E54A 1IZNA 2MNHA 3SYSA 3EMNX 4Z3TA 4AKRB 3HOEA 5AFUL 3T20A 1QJ9A 3AAEA 3C5OA 4KR8A 4LSHA 3FYXA 2XMXA 1S5LO 3PGSA 4AYMC 1PRNA 2KDYA 3PGUA 3NJTA 5G39A 4IL6O 2YNKA 4KRAA 5ADXL 2KZ7A 4FZMA 2R8AA 5GV0A 4GHBA 4N75A 1PHOA 4O3XB 4AKMA 1HXTA 3AA0B 3AA7A 1IZNB 4AYDC 2ZLDA 1GFPA 2Y0LA 2MHLA 2XE5A 4BUMX 3BRZA 2WJRA 4D5UA 1ZHYA 2XE2A 5KAFO 1P4TA 1QJ8A 4FOZA 2IWVA 2ERVA 3PGRA 2K0LA 4K3CA 2M07A 2N2MA 4RLCA 3PORA 2KZ7B 5G26A 2R4NA 2AXTO 1GFQA 1Q9GA 2Y2XA 3HWBA 3UPGA 1BXWA 3PQUA 4FSOA 5FVNA 2OMFA 3AA6A 2KXPA 1GFNA 1MPFA 4FZNA 3AA7B 3G7GA 5GTIO 3WI4A 3VY9X 1T1LA 4FESA 1GFMA 5T5FA 2PRNA 2XTQA 3RBHA 3VZUX 3NSGA 3LK2A 2M06A 4FQEA 2ODJA 3POQA 4FZLA 3JCUO 4XNKA 4JFBA 4GCPA 5DL6A 2Y0KA 3UAQA 3POUA 2PORA 5GTHO 1MM5A 1Q9FA 3AA1A 1BT9A 2KXPB 3AA6B 4GCSA 1ZHTA 4LSEA 3QRCA 4KR4A 3DA3A 3VE1A 4FRXA 2XG6A 3UU2A 3SYBA 3HW9A 3O0EA 4N59A 3TZGA 4AUIA 3KVDD 3LK2B 1THQA 3AAEB 5IYUA 4FT6A 5G38A 2ZFGA 4RJWA 5AFUK 1G90A 2R89A 4C00A 3BRYA 4E1SA 3HOLA 4O3WA 3QRAA 2R4OA 3DWNA 4LSFA 3AA1B 1GFOA 4U9CA 3LK41 3SZDA 4AYEC 3DWOX 4FMSA 4G76A 1YS5A 5ADXK 4LSIA 2YPVA 3VE2A 5DL7A 3VZWX 1OSMA 2N2LA 3PQSA 4C69X 3T24A 2KC0A 3SY7A 1ORMA 3WI5A 4GF4A 4PUXA 3BS0A 3JTYA 3DA4A 4PR7A 3V8UA 4UB6O 4RJXA 3VY8X 4B61A 5B5EO 4AZLA 4JCHA 2Y7SA 3GP6A 3POXA 3A2SX 4C4VA 4CTDA 4D65A 1ZHZA 2J1NA 4AKRA 4D64A 4RL9A 1HXUA 3A0HO 3AAAA 5DL5A 5PRNA 3T0SA 1H6S1 2QTKA 2W80C 2IWWA 1HXXA 2JMMA 6PRNA 3KZIO 4O3ZA 1BH3A 2WVPA 2GE4A 4N58A 4K3BA 3PF1A 2J4UP 2LFUA 2X9KA 4C4VB 1ZHWA 4AYNA 1QJPA 4O4UA 2JQYA 2FGQX 4PJ0O 5H2FO 4O4XA 3AAAB 3DZMA 4FUVA 2K4TA 5EE2A 4FSPA 5JDPA 2LHFA 1T16A 2R88A 2XTRA 3A0BO 1ZHXA 4AYID 4G75A 1OPFA 3K19A 2W81C 1MM4A 3WU2O 5G3AA 5TISO 5DL8A 4UB8O 3LK3A 2WJQA 3PRNA 2F1TA 4GCQA 4QQ1A 3SZVA 4O3YA 2R4PA 5D5DA 2R4LA 5KAIO 2O4VA 4O49A 5B66O 4FRTA 4XNLA 3VZTX 3SY9A 3LK42 4N74A 2X27X 4AFKA 2XE1A 7PRNA 2FGRA 2F1VA 5E79O
chains in the Genus database with same CATH topology
2XE3A 4F4BA 4E1TA 8PRNA 3LK3B 2Y0HA 4RLBA 3AA0A 1E54A 1IZNA 2MNHA 3SYSA 3EMNX 4Z3TA 4AKRB 3HOEA 5AFUL 3T20A 1QJ9A 3AAEA 3C5OA 4KR8A 4LSHA 3FYXA 2XMXA 4AYMC 1PRNA 2KDYA 5ADXL 4KRAA 2YNKA 2KZ7A 4FZMA 5GV0A 4GHBA 1PHOA 4O3XB 4AKMA 1HXTA 3AA0B 3AA7A 1IZNB 4AYDC 2ZLDA 1GFPA 2Y0LA 2MHLA 2XE5A 4BUMX 4D5UA 1ZHYA 2XE2A 1P4TA 1QJ8A 4FOZA 2ERVA 2K0LA 2M07A 2N2MA 4RLCA 3PORA 2KZ7B 5G26A 2Y2XA 3HWBA 1GFQA 1Q9GA 3UPGA 1BXWA 3PQUA 4FSOA 5FVNA 2OMFA 3AA6A 2KXPA 1GFNA 1MPFA 4FZNA 3AA7B 3G7GA 3WI4A 3VY9X 4FESA 1GFMA 5T5FA 2PRNA 2XTQA 3RBHA 3VZUX 3NSGA 3LK2A 2M06A 2ODJA 3POQA 4FZLA 4XNKA 5DL6A 4JFBA 4GCPA 3UAQA 2Y0KA 3POUA 2PORA 1MM5A 1Q9FA 3AA1A 1BT9A 2KXPB 3AA6B 4GCSA 1ZHTA 4LSEA 3QRCA 4KR4A 3DA3A 3VE1A 4FRXA 2XG6A 3UU2A 3SYBA 3HW9A 3O0EA 4N59A 3TZGA 4AUIA 3KVDD 3LK2B 1THQA 3AAEB 5IYUA 4FT6A 2ZFGA 4RJWA 5AFUK 1G90A 4E1SA 3HOLA 4O3WA 3QRAA 3SZDA 4LSFA 3AA1B 1GFOA 4U9CA 3LK41 4AYEC 4FMSA 4G76A 1YS5A 5ADXK 4LSIA 2YPVA 3VE2A 5DL7A 3VZWX 1OSMA 2N2LA 3PQSA 4C69X 3T24A 2KC0A 3SY7A 1ORMA 3WI5A 4GF4A 4PUXA 3JTYA 3DA4A 3V8UA 4RJXA 3VY8X 4B61A 5JDPA 4AZLA 4JCHA 2Y7SA 3GP6A 3POXA 3A2SX 4D65A 1ZHZA 2J1NA 4AKRA 4D64A 4RL9A 1HXUA 3AAAA 5DL5A 5PRNA 3T0SA 1H6S1 2QTKA 2W80C 1HXXA 2JMMA 6PRNA 4O3ZA 1BH3A 2GE4A 4N58A 2J4UP 2LFUA 1ZHWA 4AYNA 1QJPA 4O4UA 2FGQX 4O4XA 3AAAB 4FUVA 5EE2A 2K4TA 4FSPA 2LHFA 2XTRA 1ZHXA 4AYID 4G75A 1OPFA 3K19A 2W81C 1MM4A 5DL8A 3LK3A 3PRNA 2F1TA 4GCQA 4QQ1A 3SZVA 4O3YA 5D5DA 2O4VA 4O49A 4FRTA 4XNLA 3VZTX 3SY9A 3LK42 4AFKA 2X27X 7PRNA 2XE1A 2FGRA 2F1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE3 A;  8PRN A;  2Y0H A;  1E54 A;  3T20 A;  3SYS A;  3EMN X;  4KR8 A;  4LSH A;  3FYX A;  1PRN A;  4KRA A;  1PHO A;  1HXT A;  2J4U P;  4BUM X;  2ZLD A;  1GFP A;  2Y0L A;  2XE5 A;  4D5U A;  2XE2 A;  4FOZ A;  3POR A;  3HWB A;  2Y2X A;  1GFQ A;  3UPG A;  4FSO A;  5FVN A;  2OMF A;  1GFN A;  1MPF A;  3WI4 A;  3VY9 X;  1GFM A;  2PRN A;  3VZU X;  3NSG A;  2ODJ A;  3POQ A;  5DL6 A;  4JFB A;  4GCP A;  2Y0K A;  3POU A;  2POR A;  1BT9 A;  4GCS A;  4LSE A;  4KR4 A;  4FRX A;  2XG6 A;  3UU2 A;  3SYB A;  3HW9 A;  3O0E A;  4AUI A;  4FT6 A;  2ZFG A;  4RJW A;  3SZD A;  4LSF A;  1GFO A;  4FMS A;  4LSI A;  5DL7 A;  3VZW X;  1OSM A;  4C69 X;  3T24 A;  3SY7 A;  3WI5 A;  3JTY A;  4RJX A;  3VY8 X;  5JDP A;  3POX A;  3A2S X;  4D65 A;  2J1N A;  4D64 A;  1HXU A;  5DL5 A;  5PRN A;  3T0S A;  1H6S 1;  2QTK A;  1HXX A;  6PRN A;  1BH3 A;  2FGQ X;  2K4T A;  4FSP A;  1OPF A;  3K19 A;  5DL8 A;  3PRN A;  4GCQ A;  3SZV A;  2O4V A;  4FRT A;  3VZT X;  3SY9 A;  7PRN A;  2XE1 A;  2FGR A; 
#chains in the Genus database with same CATH topology
 2XE3 A;  4F4B A;  4E1T A;  8PRN A;  3LK3 B;  2Y0H A;  4RLB A;  2F1C X;  3AA0 A;  1E54 A;  1IZN A;  2MNH A;  3SYS A;  3EMN X;  4Z3T A;  4AKR B;  3HOE A;  5AFU L;  3T20 A;  1QJ9 A;  3AAE A;  3C5O A;  4KR8 A;  4LSH A;  3FYX A;  2XMX A;  1S5L O;  3PGS A;  4AYM C;  1PRN A;  2KDY A;  3PGU A;  3NJT A;  5G39 A;  4IL6 O;  2YNK A;  4KRA A;  5ADX L;  2KZ7 A;  4FZM A;  2R8A A;  5GV0 A;  4GHB A;  4N75 A;  1PHO A;  4O3X B;  4AKM A;  1HXT A;  3AA0 B;  3AA7 A;  1IZN B;  4AYD C;  2ZLD A;  1GFP A;  2Y0L A;  2MHL A;  2XE5 A;  4BUM X;  3BRZ A;  2WJR A;  4D5U A;  1ZHY A;  2XE2 A;  5KAF O;  1P4T A;  1QJ8 A;  4FOZ A;  2IWV A;  2ERV A;  3PGR A;  2K0L A;  4K3C A;  2M07 A;  2N2M A;  4RLC A;  3POR A;  2KZ7 B;  5G26 A;  2R4N A;  2AXT O;  1GFQ A;  1Q9G A;  2Y2X A;  3HWB A;  3UPG A;  1BXW A;  3PQU A;  4FSO A;  5FVN A;  2OMF A;  3AA6 A;  2KXP A;  1GFN A;  1MPF A;  4FZN A;  3AA7 B;  3G7G A;  5GTI O;  3WI4 A;  3VY9 X;  1T1L A;  4FES A;  1GFM A;  5T5F A;  2PRN A;  2XTQ A;  3RBH A;  3VZU X;  3NSG A;  3LK2 A;  2M06 A;  4FQE A;  2ODJ A;  3POQ A;  4FZL A;  3JCU O;  4XNK A;  4JFB A;  4GCP A;  5DL6 A;  2Y0K A;  3UAQ A;  3POU A;  2POR A;  5GTH O;  1MM5 A;  1Q9F A;  3AA1 A;  1BT9 A;  2KXP B;  3AA6 B;  4GCS A;  1ZHT A;  4LSE A;  3QRC A;  4KR4 A;  3DA3 A;  3VE1 A;  4FRX A;  2XG6 A;  3UU2 A;  3SYB A;  3HW9 A;  3O0E A;  4N59 A;  3TZG A;  4AUI A;  3KVD D;  3LK2 B;  1THQ A;  3AAE B;  5IYU A;  4FT6 A;  5G38 A;  2ZFG A;  4RJW A;  5AFU K;  1G90 A;  2R89 A;  4C00 A;  3BRY A;  4E1S A;  3HOL A;  4O3W A;  3QRA A;  2R4O A;  3DWN A;  4LSF A;  3AA1 B;  1GFO A;  4U9C A;  3LK4 1;  3SZD A;  4AYE C;  3DWO X;  4FMS A;  4G76 A;  1YS5 A;  5ADX K;  4LSI A;  2YPV A;  3VE2 A;  5DL7 A;  3VZW X;  1OSM A;  2N2L A;  3PQS A;  4C69 X;  3T24 A;  2KC0 A;  3SY7 A;  1ORM A;  3WI5 A;  4GF4 A;  4PUX A;  3BS0 A;  3JTY A;  3DA4 A;  4PR7 A;  3V8U A;  4UB6 O;  4RJX A;  3VY8 X;  4B61 A;  5B5E O;  4AZL A;  4JCH A;  2Y7S A;  3GP6 A;  3POX A;  3A2S X;  4C4V A;  4CTD A;  4D65 A;  1ZHZ A;  2J1N A;  4AKR A;  4D64 A;  4RL9 A;  1HXU A;  3A0H O;  3AAA A;  5DL5 A;  5PRN A;  3T0S A;  1H6S 1;  2QTK A;  2W80 C;  2IWW A;  1HXX A;  2JMM A;  6PRN A;  3KZI O;  4O3Z A;  1BH3 A;  2WVP A;  2GE4 A;  4N58 A;  4K3B A;  3PF1 A;  2J4U P;  2LFU A;  2X9K A;  4C4V B;  1ZHW A;  4AYN A;  1QJP A;  4O4U A;  2JQY A;  2FGQ X;  4PJ0 O;  5H2F O;  4O4X A;  3AAA B;  3DZM A;  4FUV A;  2K4T A;  5EE2 A;  4FSP A;  5JDP A;  2LHF A;  1T16 A;  2R88 A;  2XTR A;  3A0B O;  1ZHX A;  4AYI D;  4G75 A;  1OPF A;  3K19 A;  2W81 C;  1MM4 A;  3WU2 O;  5G3A A;  5TIS O;  5DL8 A;  4UB8 O;  3LK3 A;  2WJQ A;  3PRN A;  2F1T A;  4GCQ A;  4QQ1 A;  3SZV A;  4O3Y A;  2R4P A;  5D5D A;  2R4L A;  5KAI O;  2O4V A;  4O49 A;  5B66 O;  4FRT A;  4XNL A;  3VZT X;  3SY9 A;  3LK4 2;  4N74 A;  2X27 X;  4AFK A;  2XE1 A;  7PRN A;  2FGR A;  2F1V A;  5E79 O; 
#chains in the Genus database with same CATH homology
 2XE3 A;  4F4B A;  4E1T A;  8PRN A;  3LK3 B;  2Y0H A;  4RLB A;  3AA0 A;  1E54 A;  1IZN A;  2MNH A;  3SYS A;  3EMN X;  4Z3T A;  4AKR B;  3HOE A;  5AFU L;  3T20 A;  1QJ9 A;  3AAE A;  3C5O A;  4KR8 A;  4LSH A;  3FYX A;  2XMX A;  4AYM C;  1PRN A;  2KDY A;  5ADX L;  4KRA A;  2YNK A;  2KZ7 A;  4FZM A;  5GV0 A;  4GHB A;  1PHO A;  4O3X B;  4AKM A;  1HXT A;  3AA0 B;  3AA7 A;  1IZN B;  4AYD C;  2ZLD A;  1GFP A;  2Y0L A;  2MHL A;  2XE5 A;  4BUM X;  4D5U A;  1ZHY A;  2XE2 A;  1P4T A;  1QJ8 A;  4FOZ A;  2ERV A;  2K0L A;  2M07 A;  2N2M A;  4RLC A;  3POR A;  2KZ7 B;  5G26 A;  2Y2X A;  3HWB A;  1GFQ A;  1Q9G A;  3UPG A;  1BXW A;  3PQU A;  4FSO A;  5FVN A;  2OMF A;  3AA6 A;  2KXP A;  1GFN A;  1MPF A;  4FZN A;  3AA7 B;  3G7G A;  3WI4 A;  3VY9 X;  4FES A;  1GFM A;  5T5F A;  2PRN A;  2XTQ A;  3RBH A;  3VZU X;  3NSG A;  3LK2 A;  2M06 A;  2ODJ A;  3POQ A;  4FZL A;  4XNK A;  5DL6 A;  4JFB A;  4GCP A;  3UAQ A;  2Y0K A;  3POU A;  2POR A;  1MM5 A;  1Q9F A;  3AA1 A;  1BT9 A;  2KXP B;  3AA6 B;  4GCS A;  1ZHT A;  4LSE A;  3QRC A;  4KR4 A;  3DA3 A;  3VE1 A;  4FRX A;  2XG6 A;  3UU2 A;  3SYB A;  3HW9 A;  3O0E A;  4N59 A;  3TZG A;  4AUI A;  3KVD D;  3LK2 B;  1THQ A;  3AAE B;  5IYU A;  4FT6 A;  2ZFG A;  4RJW A;  5AFU K;  1G90 A;  4E1S A;  3HOL A;  4O3W A;  3QRA A;  3SZD A;  4LSF A;  3AA1 B;  1GFO A;  4U9C A;  3LK4 1;  4AYE C;  4FMS A;  4G76 A;  1YS5 A;  5ADX K;  4LSI A;  2YPV A;  3VE2 A;  5DL7 A;  3VZW X;  1OSM A;  2N2L A;  3PQS A;  4C69 X;  3T24 A;  2KC0 A;  3SY7 A;  1ORM A;  3WI5 A;  4GF4 A;  4PUX A;  3JTY A;  3DA4 A;  3V8U A;  4RJX A;  3VY8 X;  4B61 A;  5JDP A;  4AZL A;  4JCH A;  2Y7S A;  3GP6 A;  3POX A;  3A2S X;  4D65 A;  1ZHZ A;  2J1N A;  4AKR A;  4D64 A;  4RL9 A;  1HXU A;  3AAA A;  5DL5 A;  5PRN A;  3T0S A;  1H6S 1;  2QTK A;  2W80 C;  1HXX A;  2JMM A;  6PRN A;  4O3Z A;  1BH3 A;  2GE4 A;  4N58 A;  2J4U P;  2LFU A;  1ZHW A;  4AYN A;  1QJP A;  4O4U A;  2FGQ X;  4O4X A;  3AAA B;  4FUV A;  5EE2 A;  2K4T A;  4FSP A;  2LHF A;  2XTR A;  1ZHX A;  4AYI D;  4G75 A;  1OPF A;  3K19 A;  2W81 C;  1MM4 A;  5DL8 A;  3LK3 A;  3PRN A;  2F1T A;  4GCQ A;  4QQ1 A;  3SZV A;  4O3Y A;  5D5D A;  2O4V A;  4O49 A;  4FRT A;  4XNL A;  3VZT X;  3SY9 A;  3LK4 2;  4AFK A;  2X27 X;  7PRN A;  2XE1 A;  2FGR A;  2F1V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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