3VY8X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group p63
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
molecule keywords Outer membrane protein
total genus 81
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy8X00
3WI4A 3T20A 1HXUA 2XG6A 3O0EA 4GCPA 3VZTX 3WI5A 5DL6A 8PRNA 4KR4A 1BT9A 2O4VA 4FOZA 5PRNA 2PRNA 2ZFGA 5DL7A 4FMSA 4KR8A 4D65A 3K19A 2J1NA 1PHOA 3VZUX 2FGQX 3EMNX 1GFMA 1PRNA 2XE3A 2Y0KA 4FSPA 2QTKA 4GCQA 3POQA 2Y0HA 1GFQA 4RJXA 1MPFA 3UPGA 1E54A 2FGRA 4LSFA 3A2SX 3T0SA 2ZLDA 4KRAA 1HXXA 3SZDA 4FSOA 2Y2XA 3JTYA 1H6S1 3PRNA 3HWBA 4FT6A 5DL8A 3SZVA 2XE5A 3VY9X 1OSMA 3FYXA 3SY9A 1OPFA 1HXTA 1GFOA 4GCSA 3NSGA 3VY8X 2J4UP 4RJWA 3POUA 1GFPA 4C69X 1BH3A 5DL5A 3T24A 3SYSA 4LSEA 3VZWX 2XE1A 4FRTA 4AUIA 3UU2A 2K4TA 4D5UA 4BUMX 3SY7A 2Y0LA 3PORA 5FVNA 4D64A 3POXA 2OMFA 2PORA 4FRXA 6PRNA 4LSHA 7PRNA 2XE2A 3SYBA 4JFBA 1GFNA 2ODJA 5JDPA 3HW9A 4LSIA
chains in the Genus database with same CATH superfamily
1ZHYA 4GF4A 5ADXK 4JCHA 3BRYA 5G39A 3AA1A 3TZGA 3WI4A 1HXUA 2XTQA 3T20A 2XG6A 3O0EA 4O49A 2GE4A 4C4VB 3GP6A 3AA1B 4GCPA 3VZTX 3HOEA 3AAEB 3WI5A 1Q9GA 4N59A 4RL9A 5DL6A 4E1SA 2WJQA 2JMMA 4QQ1A 1YS5A 4FQEA 4O3ZA 5G3AA 8PRNA 4KR4A 1BT9A 4O3WA 2O4VA 4AYDC 4FOZA 4N58A 2YPVA 4G76A 5PRNA 2KXPB 4PR7A 2N2MA 4AYMC 3AA0A 2PRNA 2ZFGA 5D5DA 5DL7A 4FMSA 3UAQA 4K3CA 4KR8A 4D65A 5TISO 2LHFA 3K19A 2J1NA 2W80C 5G26A 4RLBA 2IWWA 3LK2B 4PJ0O 3DZMA 2N2LA 1PHOA 3VZUX 2FGQX 3EMNX 2R4OA 1GFMA 4FUVA 1PRNA 2XE3A 2Y0KA 4FSPA 2QTKA 4AYID 3C5OA 4GCQA 3POQA 1S5LO 1MM4A 2Y0HA 3AA6A 3AAEA 3QRAA 2MNHA 1GFQA 4K3BA 4RJXA 1MPFA 2F1VA 3JCUO 2MHLA 3UPGA 1E54A 2F1TA 2FGRA 3LK41 4IL6O 4LSFA 2M06A 3KZIO 3A2SX 4O3XB 2ZLDA 2KZ7B 1HXXA 2ERVA 4FESA 4KRAA 3SZDA 3T0SA 5AFUK 4FSOA 3V8UA 5AFUL 2Y2XA 3JTYA 1H6S1 2R88A 3PRNA 4UB6O 3LK3A 4AFKA 2R4LA 3PQSA 1IZNB 2R89A 4AKRA 3HWBA 4FT6A 1MM5A 4XNKA 3LK3B 5DL8A 3SZVA 2XE5A 1G90A 2X27X 3VY9X 1OSMA 3FYXA 3SY9A 2YNKA 3WU2O 1OPFA 1ORMA 1HXTA 1T16A 4FZLA 4CTDA 3PQUA 4C00A 3DWOX 5GTHO 2JQYA 4RLCA 1GFOA 5B66O 4GCSA 3NSGA 1QJ8A 2WJRA 4F4BA 1BXWA 3VY8X 2J4UP 3PGUA 2AXTO 4RJWA 3AA0B 2IWVA 3POUA 1GFPA 4AYNA 4C69X 1ZHWA 2W81C 1BH3A 5DL5A 3AAAA 2R8AA 3SYSA 5GTIO 3T24A 4AZLA 2X9KA 4LSEA 3VZWX 5ADXL 2XE1A 2K0LA 4FRTA 5G38A 3A0HO 4AUIA 3UU2A 3BS0A 5KAFO 4UB8O 3AA7A 2XTRA 3LK42 2M07A 1ZHXA 2K4TA 3AA6B 4Z3TA 4D5UA 2KC0A 3QRCA 4O4XA 4GHBA 2KDYA 4N74A 3LK2A 3SY7A 4N75A 2Y7SA 4BUMX 4XNLA 5KAIO 2Y0LA 4AYEC 3DA4A 4B61A 3PORA 1P4TA 3VE2A 4U9CA 4AKMA 3DWNA 5B5EO 3NJTA 1ZHZA 5FVNA 4FZMA 4FZNA 2KXPA 4C4VA 4D64A 5EE2A 3AAAB 3POXA 2LFUA 1Q9FA 2XMXA 4O4UA 3RBHA 2R4PA 3PGRA 1QJPA 2KZ7A 3PGSA 1THQA 5T5FA 1ZHTA 2OMFA 2PORA 4G75A 3VE1A 2WVPA 5E79O 3AA7B 4FRXA 2F1CX 6PRNA 1IZNA 3BRZA 4LSHA 4AKRB 3DA3A 5H2FO 5IYUA 7PRNA 2XE2A 1T1LA 3G7GA 3SYBA 4JFBA 1GFNA 2R4NA 3A0BO 2ODJA 4O3YA 3PF1A 4PUXA 5GV0A 5JDPA 3HW9A 4LSIA 4E1TA 3KVDD 3HOLA 1QJ9A
chains in the Genus database with same CATH topology
1ZHYA 4GF4A 5ADXK 4JCHA 3AA1A 3TZGA 3WI4A 1HXUA 2XTQA 3T20A 2XG6A 3O0EA 4O49A 2GE4A 3GP6A 3AA1B 4GCPA 3VZTX 3HOEA 3AAEB 3WI5A 1Q9GA 4N59A 4RL9A 5DL6A 4E1SA 4QQ1A 2JMMA 1YS5A 4O3ZA 8PRNA 4KR4A 1BT9A 4O3WA 2O4VA 4AYDC 4FOZA 4N58A 2YPVA 4G76A 5PRNA 2KXPB 2N2MA 4AYMC 3AA0A 2PRNA 2ZFGA 5D5DA 5DL7A 4FMSA 3UAQA 4KR8A 4D65A 2LHFA 3K19A 2J1NA 2W80C 5G26A 4RLBA 3LK2B 2N2LA 1PHOA 3VZUX 2FGQX 3EMNX 4FUVA 1GFMA 4AYID 1PRNA 2XE3A 2Y0KA 4FSPA 2QTKA 5IYUA 3C5OA 4GCQA 3POQA 3AA6A 1MM4A 2Y0HA 3QRAA 3AAEA 2MNHA 1GFQA 4RJXA 1MPFA 2F1VA 2MHLA 3UPGA 1E54A 2F1TA 2FGRA 3LK41 4LSFA 2M06A 3A2SX 4O3XB 2ZLDA 2KZ7B 1HXXA 2ERVA 4FESA 4KRAA 3SZDA 3T0SA 5AFUK 4FSOA 3V8UA 5AFUL 2Y2XA 3JTYA 1H6S1 3PRNA 3LK3A 4AFKA 3PQSA 1IZNB 4AKRA 3HWBA 4FT6A 1MM5A 4XNKA 3LK3B 5DL8A 3SZVA 2XE5A 1G90A 2X27X 3VY9X 1OSMA 3FYXA 3SY9A 2YNKA 1OPFA 1ORMA 1HXTA 4FZLA 3PQUA 4RLCA 1GFOA 4GCSA 3NSGA 1QJ8A 4F4BA 1BXWA 3VY8X 2J4UP 4RJWA 3AA0B 3POUA 1GFPA 4AYNA 4C69X 1ZHWA 2W81C 1BH3A 5DL5A 3AAAA 3T24A 3SYSA 4AZLA 4LSEA 3VZWX 5ADXL 2XE1A 2K0LA 4FRTA 4AUIA 3UU2A 3AA7A 2XTRA 3LK42 2M07A 1ZHXA 2K4TA 3AA6B 4Z3TA 4D5UA 2KC0A 3QRCA 4O4XA 4GHBA 2KDYA 3LK2A 3SY7A 4BUMX 2Y7SA 4XNLA 2Y0LA 4AYEC 3DA4A 4B61A 3PORA 1P4TA 3VE2A 4U9CA 4AKMA 5FVNA 1ZHZA 4FZMA 4FZNA 2KXPA 4D64A 5EE2A 3AAAB 3POXA 2LFUA 1Q9FA 2XMXA 4O4UA 3RBHA 1QJPA 2KZ7A 1THQA 5T5FA 1ZHTA 2OMFA 2PORA 4G75A 3VE1A 3AA7B 4FRXA 6PRNA 1IZNA 4LSHA 4AKRB 3DA3A 7PRNA 2XE2A 3G7GA 3SYBA 4JFBA 1GFNA 4O3YA 2ODJA 4PUXA 5GV0A 5JDPA 3HW9A 4LSIA 4E1TA 3KVDD 3HOLA 1QJ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WI4 A;  3T20 A;  1HXU A;  2XG6 A;  3O0E A;  4GCP A;  3VZT X;  3WI5 A;  5DL6 A;  8PRN A;  4KR4 A;  1BT9 A;  2O4V A;  4FOZ A;  5PRN A;  2PRN A;  2ZFG A;  5DL7 A;  4FMS A;  4KR8 A;  4D65 A;  3K19 A;  2J1N A;  1PHO A;  3VZU X;  2FGQ X;  3EMN X;  1GFM A;  1PRN A;  2XE3 A;  2Y0K A;  4FSP A;  2QTK A;  4GCQ A;  3POQ A;  2Y0H A;  1GFQ A;  4RJX A;  1MPF A;  3UPG A;  1E54 A;  2FGR A;  4LSF A;  3A2S X;  3T0S A;  2ZLD A;  4KRA A;  1HXX A;  3SZD A;  4FSO A;  2Y2X A;  3JTY A;  1H6S 1;  3PRN A;  3HWB A;  4FT6 A;  5DL8 A;  3SZV A;  2XE5 A;  3VY9 X;  1OSM A;  3FYX A;  3SY9 A;  1OPF A;  1HXT A;  1GFO A;  4GCS A;  3NSG A;  3VY8 X;  2J4U P;  4RJW A;  3POU A;  1GFP A;  4C69 X;  1BH3 A;  5DL5 A;  3T24 A;  3SYS A;  4LSE A;  3VZW X;  2XE1 A;  4FRT A;  4AUI A;  3UU2 A;  2K4T A;  4D5U A;  4BUM X;  3SY7 A;  2Y0L A;  3POR A;  5FVN A;  4D64 A;  3POX A;  2OMF A;  2POR A;  4FRX A;  6PRN A;  4LSH A;  7PRN A;  2XE2 A;  3SYB A;  4JFB A;  1GFN A;  2ODJ A;  5JDP A;  3HW9 A;  4LSI A; 
#chains in the Genus database with same CATH topology
 1ZHY A;  4GF4 A;  5ADX K;  4JCH A;  3BRY A;  5G39 A;  3AA1 A;  3TZG A;  3WI4 A;  1HXU A;  2XTQ A;  3T20 A;  2XG6 A;  3O0E A;  4O49 A;  2GE4 A;  4C4V B;  3GP6 A;  3AA1 B;  4GCP A;  3VZT X;  3HOE A;  3AAE B;  3WI5 A;  1Q9G A;  4N59 A;  4RL9 A;  5DL6 A;  4E1S A;  2WJQ A;  2JMM A;  4QQ1 A;  1YS5 A;  4FQE A;  4O3Z A;  5G3A A;  8PRN A;  4KR4 A;  1BT9 A;  4O3W A;  2O4V A;  4AYD C;  4FOZ A;  4N58 A;  2YPV A;  4G76 A;  5PRN A;  2KXP B;  4PR7 A;  2N2M A;  4AYM C;  3AA0 A;  2PRN A;  2ZFG A;  5D5D A;  5DL7 A;  4FMS A;  3UAQ A;  4K3C A;  4KR8 A;  4D65 A;  5TIS O;  2LHF A;  3K19 A;  2J1N A;  2W80 C;  5G26 A;  4RLB A;  2IWW A;  3LK2 B;  4PJ0 O;  3DZM A;  2N2L A;  1PHO A;  3VZU X;  2FGQ X;  3EMN X;  2R4O A;  1GFM A;  4FUV A;  1PRN A;  2XE3 A;  2Y0K A;  4FSP A;  2QTK A;  4AYI D;  3C5O A;  4GCQ A;  3POQ A;  1S5L O;  1MM4 A;  2Y0H A;  3AA6 A;  3AAE A;  3QRA A;  2MNH A;  1GFQ A;  4K3B A;  4RJX A;  1MPF A;  2F1V A;  3JCU O;  2MHL A;  3UPG A;  1E54 A;  2F1T A;  2FGR A;  3LK4 1;  4IL6 O;  4LSF A;  2M06 A;  3KZI O;  3A2S X;  4O3X B;  2ZLD A;  2KZ7 B;  1HXX A;  2ERV A;  4FES A;  4KRA A;  3SZD A;  3T0S A;  5AFU K;  4FSO A;  3V8U A;  5AFU L;  2Y2X A;  3JTY A;  1H6S 1;  2R88 A;  3PRN A;  4UB6 O;  3LK3 A;  4AFK A;  2R4L A;  3PQS A;  1IZN B;  2R89 A;  4AKR A;  3HWB A;  4FT6 A;  1MM5 A;  4XNK A;  3LK3 B;  5DL8 A;  3SZV A;  2XE5 A;  1G90 A;  2X27 X;  3VY9 X;  1OSM A;  3FYX A;  3SY9 A;  2YNK A;  3WU2 O;  1OPF A;  1ORM A;  1HXT A;  1T16 A;  4FZL A;  4CTD A;  3PQU A;  4C00 A;  3DWO X;  5GTH O;  2JQY A;  4RLC A;  1GFO A;  5B66 O;  4GCS A;  3NSG A;  1QJ8 A;  2WJR A;  4F4B A;  1BXW A;  3VY8 X;  2J4U P;  3PGU A;  2AXT O;  4RJW A;  3AA0 B;  2IWV A;  3POU A;  1GFP A;  4AYN A;  4C69 X;  1ZHW A;  2W81 C;  1BH3 A;  5DL5 A;  3AAA A;  2R8A A;  3SYS A;  5GTI O;  3T24 A;  4AZL A;  2X9K A;  4LSE A;  3VZW X;  5ADX L;  2XE1 A;  2K0L A;  4FRT A;  5G38 A;  3A0H O;  4AUI A;  3UU2 A;  3BS0 A;  5KAF O;  4UB8 O;  3AA7 A;  2XTR A;  3LK4 2;  2M07 A;  1ZHX A;  2K4T A;  3AA6 B;  4Z3T A;  4D5U A;  2KC0 A;  3QRC A;  4O4X A;  4GHB A;  2KDY A;  4N74 A;  3LK2 A;  3SY7 A;  4N75 A;  2Y7S A;  4BUM X;  4XNL A;  5KAI O;  2Y0L A;  4AYE C;  3DA4 A;  4B61 A;  3POR A;  1P4T A;  3VE2 A;  4U9C A;  4AKM A;  3DWN A;  5B5E O;  3NJT A;  1ZHZ A;  5FVN A;  4FZM A;  4FZN A;  2KXP A;  4C4V A;  4D64 A;  5EE2 A;  3AAA B;  3POX A;  2LFU A;  1Q9F A;  2XMX A;  4O4U A;  3RBH A;  2R4P A;  3PGR A;  1QJP A;  2KZ7 A;  3PGS A;  1THQ A;  5T5F A;  1ZHT A;  2OMF A;  2POR A;  4G75 A;  3VE1 A;  2WVP A;  5E79 O;  3AA7 B;  4FRX A;  2F1C X;  6PRN A;  1IZN A;  3BRZ A;  4LSH A;  4AKR B;  3DA3 A;  5H2F O;  5IYU A;  7PRN A;  2XE2 A;  1T1L A;  3G7G A;  3SYB A;  4JFB A;  1GFN A;  2R4N A;  3A0B O;  2ODJ A;  4O3Y A;  3PF1 A;  4PUX A;  5GV0 A;  5JDP A;  3HW9 A;  4LSI A;  4E1T A;  3KVD D;  3HOL A;  1QJ9 A; 
#chains in the Genus database with same CATH homology
 1ZHY A;  4GF4 A;  5ADX K;  4JCH A;  3AA1 A;  3TZG A;  3WI4 A;  1HXU A;  2XTQ A;  3T20 A;  2XG6 A;  3O0E A;  4O49 A;  2GE4 A;  3GP6 A;  3AA1 B;  4GCP A;  3VZT X;  3HOE A;  3AAE B;  3WI5 A;  1Q9G A;  4N59 A;  4RL9 A;  5DL6 A;  4E1S A;  4QQ1 A;  2JMM A;  1YS5 A;  4O3Z A;  8PRN A;  4KR4 A;  1BT9 A;  4O3W A;  2O4V A;  4AYD C;  4FOZ A;  4N58 A;  2YPV A;  4G76 A;  5PRN A;  2KXP B;  2N2M A;  4AYM C;  3AA0 A;  2PRN A;  2ZFG A;  5D5D A;  5DL7 A;  4FMS A;  3UAQ A;  4KR8 A;  4D65 A;  2LHF A;  3K19 A;  2J1N A;  2W80 C;  5G26 A;  4RLB A;  3LK2 B;  2N2L A;  1PHO A;  3VZU X;  2FGQ X;  3EMN X;  4FUV A;  1GFM A;  4AYI D;  1PRN A;  2XE3 A;  2Y0K A;  4FSP A;  2QTK A;  5IYU A;  3C5O A;  4GCQ A;  3POQ A;  3AA6 A;  1MM4 A;  2Y0H A;  3QRA A;  3AAE A;  2MNH A;  1GFQ A;  4RJX A;  1MPF A;  2F1V A;  2MHL A;  3UPG A;  1E54 A;  2F1T A;  2FGR A;  3LK4 1;  4LSF A;  2M06 A;  3A2S X;  4O3X B;  2ZLD A;  2KZ7 B;  1HXX A;  2ERV A;  4FES A;  4KRA A;  3SZD A;  3T0S A;  5AFU K;  4FSO A;  3V8U A;  5AFU L;  2Y2X A;  3JTY A;  1H6S 1;  3PRN A;  3LK3 A;  4AFK A;  3PQS A;  1IZN B;  4AKR A;  3HWB A;  4FT6 A;  1MM5 A;  4XNK A;  3LK3 B;  5DL8 A;  3SZV A;  2XE5 A;  1G90 A;  2X27 X;  3VY9 X;  1OSM A;  3FYX A;  3SY9 A;  2YNK A;  1OPF A;  1ORM A;  1HXT A;  4FZL A;  3PQU A;  4RLC A;  1GFO A;  4GCS A;  3NSG A;  1QJ8 A;  4F4B A;  1BXW A;  3VY8 X;  2J4U P;  4RJW A;  3AA0 B;  3POU A;  1GFP A;  4AYN A;  4C69 X;  1ZHW A;  2W81 C;  1BH3 A;  5DL5 A;  3AAA A;  3T24 A;  3SYS A;  4AZL A;  4LSE A;  3VZW X;  5ADX L;  2XE1 A;  2K0L A;  4FRT A;  4AUI A;  3UU2 A;  3AA7 A;  2XTR A;  3LK4 2;  2M07 A;  1ZHX A;  2K4T A;  3AA6 B;  4Z3T A;  4D5U A;  2KC0 A;  3QRC A;  4O4X A;  4GHB A;  2KDY A;  3LK2 A;  3SY7 A;  4BUM X;  2Y7S A;  4XNL A;  2Y0L A;  4AYE C;  3DA4 A;  4B61 A;  3POR A;  1P4T A;  3VE2 A;  4U9C A;  4AKM A;  5FVN A;  1ZHZ A;  4FZM A;  4FZN A;  2KXP A;  4D64 A;  5EE2 A;  3AAA B;  3POX A;  2LFU A;  1Q9F A;  2XMX A;  4O4U A;  3RBH A;  1QJP A;  2KZ7 A;  1THQ A;  5T5F A;  1ZHT A;  2OMF A;  2POR A;  4G75 A;  3VE1 A;  3AA7 B;  4FRX A;  6PRN A;  1IZN A;  4LSH A;  4AKR B;  3DA3 A;  7PRN A;  2XE2 A;  3G7G A;  3SYB A;  4JFB A;  1GFN A;  4O3Y A;  2ODJ A;  4PUX A;  5GV0 A;  5JDP A;  3HW9 A;  4LSI A;  4E1T A;  3KVD D;  3HOL A;  1QJ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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