2R8AA

Crystal structure of the long-chain fatty acid transporter fadl mutant delta n8
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
413
structure length
360
Chain Sequence
AGSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Escherichia coli
publication title From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
total genus 90
structure length 360
sequence length 413
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 2r8aA00
2R8AA 2R4LA 2R4OA 2R88A 3DWNA 2R4NA 3PGSA 3PF1A 3PGRA 3DWOX 3PGUA 2R4PA 3BRZA 3BRYA 2R89A 1T16A 3BS0A 1T1LA
chains in the Genus database with same CATH superfamily
5AFUK 3UPGA 2R88A 2KZ7A 2PRNA 2PORA 2W80C 1Q9GA 5DL8A 1GFNA 3HOLA 2MNHA 3DA4A 1GFPA 2WJQA 4O3WA 5G26A 4E1SA 3LK2B 4FZLA 4RJXA 4BUMX 4RLCA 5G3AA 2FGRA 4CTDA 1BT9A 1GFQA 2LHFA 2KC0A 3VZWX 4E1TA 3BS0A 5T5FA 1ZHYA 3VY8X 3PGSA 2M06A 3QRAA 3TZGA 3DWOX 4FSPA 3VE1A 4FZNA 1BXWA 4GHBA 5DL7A 5KAFO 4F4BA 4O3XB 1HXUA 4LSEA 4O3ZA 1H6S1 5B5EO 3VY9X 3PGRA 2J1NA 3T20A 1GFOA 3GP6A 4B61A 3RBHA 4GCQA 1S5LO 3BRZA 1IZNA 3HWBA 2Y7SA 2LFUA 3V8UA 2Y0KA 3O0EA 5KAIO 3WI4A 4AKRA 2Y2XA 3SZDA 2W81C 4LSFA 2WJRA 5JDPA 4O4XA 2XE3A 4O3YA 3POXA 4LSHA 2O4VA 3A2SX 3PORA 4G76A 4XNLA 3AAAA 5DL6A 5EE2A 4N59A 2ZLDA 3SY7A 3UAQA 4D65A 3NJTA 5GTHO 3AA7A 2QTKA 4XNKA 1OSMA 3HW9A 4KR4A 3BRYA 3JTYA 2KDYA 1YS5A 5B66O 2X9KA 3T0SA 3A0HO 2XE2A 4KRAA 1MM5A 5D5DA 2ZFGA 3PF1A 3AA0A 1MPFA 4FZMA 1QJ8A 2IWWA 2F1CX 4AYEC 5ADXL 3AAEA 3PQUA 4AYMC 4PR7A 1QJPA 1P4TA 3A0BO 2K0LA 1OPFA 1ZHWA 3DWNA 2F1VA 3T24A 5IYUA 4AZLA 3NSGA 4N74A 2MHLA 4RLBA 4D64A 2OMFA 3AA6A 2KZ7B 3JCUO 4UB8O 3FYXA 8PRNA 5GTIO 2YNKA 2YPVA 3AAAB 1Q9FA 2AXTO 1THQA 4FUVA 3POQA 5FVNA 3SYSA 3SY9A 4U9CA 2ERVA 3KVDD 4LSIA 4AFKA 1HXTA 1PHOA 2R8AA 1HXXA 3DA3A 2R4OA 3DZMA 4JFBA 4UB6O 5E79O 4C4VA 2X27X 4RL9A 4D5UA 2JQYA 3LK2A 2R4PA 3AA1A 4QQ1A 4GF4A 1T16A 1T1LA 3AAEB 1E54A 2N2MA 3LK41 1ZHXA 4JCHA 4FMSA 3EMNX 4K3BA 1PRNA 3KZIO 1ZHZA 2J4UP 1MM4A 5ADXK 4GCPA 4PUXA 2XE1A 4FQEA 4FT6A 3LK3A 1IZNB 4AUIA 4AYID 2R4NA 1BH3A 3PGUA 4AKRB 3PQSA 2K4TA 4N75A 2KXPA 2XTQA 2N2LA 3POUA 4K3CA 4FESA 4Z3TA 2IWVA 4N58A 2XE5A 4AYNA 2ODJA 4FRTA 5AFUL 1QJ9A 5DL5A 3UU2A 3G7GA 4C4VB 1ORMA 3VZUX 3PRNA 3VZTX 6PRNA 2WVPA 4G75A 3AA1B 3AA7B 4GCSA 4PJ0O 4C00A 5H2FO 3HOEA 2R4LA 1GFMA 2M07A 3AA0B 4FSOA 4O4UA 5GV0A 3SZVA 5PRNA 3LK3B 4RJWA 4FOZA 2XG6A 5G39A 4FRXA 1ZHTA 2GE4A 4C69X 3SYBA 4AYDC 1G90A 7PRNA 2KXPB 2XTRA 2Y0HA 3K19A 3C5OA 3LK42 3AA6B 2FGQX 5TISO 4KR8A 3VE2A 3WI5A 3QRCA 4O49A 4AKMA 2F1TA 2XMXA 3WU2O 2Y0LA 5G38A 2R89A 4IL6O 2JMMA
chains in the Genus database with same CATH topology
2R8AA 2R4LA 2R4OA 2R88A 3DWNA 2R4NA 3PGSA 3PF1A 3PGRA 3DWOX 3PGUA 2R4PA 3BRZA 3BRYA 2R89A 1T16A 3BS0A 1T1LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R8A A;  2R4L A;  2R4O A;  2R88 A;  3DWN A;  2R4N A;  3PGS A;  3PF1 A;  3PGR A;  3DWO X;  3PGU A;  2R4P A;  3BRZ A;  3BRY A;  2R89 A;  1T16 A;  3BS0 A;  1T1L A; 
#chains in the Genus database with same CATH topology
 5AFU K;  3UPG A;  2R88 A;  2KZ7 A;  2PRN A;  2POR A;  2W80 C;  1Q9G A;  5DL8 A;  1GFN A;  3HOL A;  2MNH A;  3DA4 A;  1GFP A;  2WJQ A;  4O3W A;  5G26 A;  4E1S A;  3LK2 B;  4FZL A;  4RJX A;  4BUM X;  4RLC A;  5G3A A;  2FGR A;  4CTD A;  1BT9 A;  1GFQ A;  2LHF A;  2KC0 A;  3VZW X;  4E1T A;  3BS0 A;  5T5F A;  1ZHY A;  3VY8 X;  3PGS A;  2M06 A;  3QRA A;  3TZG A;  3DWO X;  4FSP A;  3VE1 A;  4FZN A;  1BXW A;  4GHB A;  5DL7 A;  5KAF O;  4F4B A;  4O3X B;  1HXU A;  4LSE A;  4O3Z A;  1H6S 1;  5B5E O;  3VY9 X;  3PGR A;  2J1N A;  3T20 A;  1GFO A;  3GP6 A;  4B61 A;  3RBH A;  4GCQ A;  1S5L O;  3BRZ A;  1IZN A;  3HWB A;  2Y7S A;  2LFU A;  3V8U A;  2Y0K A;  3O0E A;  5KAI O;  3WI4 A;  4AKR A;  2Y2X A;  3SZD A;  2W81 C;  4LSF A;  2WJR A;  5JDP A;  4O4X A;  2XE3 A;  4O3Y A;  3POX A;  4LSH A;  2O4V A;  3A2S X;  3POR A;  4G76 A;  4XNL A;  3AAA A;  5DL6 A;  5EE2 A;  4N59 A;  2ZLD A;  3SY7 A;  3UAQ A;  4D65 A;  3NJT A;  5GTH O;  3AA7 A;  2QTK A;  4XNK A;  1OSM A;  3HW9 A;  4KR4 A;  3BRY A;  3JTY A;  2KDY A;  1YS5 A;  5B66 O;  2X9K A;  3T0S A;  3A0H O;  2XE2 A;  4KRA A;  1MM5 A;  5D5D A;  2ZFG A;  3PF1 A;  3AA0 A;  1MPF A;  4FZM A;  1QJ8 A;  2IWW A;  2F1C X;  4AYE C;  5ADX L;  3AAE A;  3PQU A;  4AYM C;  4PR7 A;  1QJP A;  1P4T A;  3A0B O;  2K0L A;  1OPF A;  1ZHW A;  3DWN A;  2F1V A;  3T24 A;  5IYU A;  4AZL A;  3NSG A;  4N74 A;  2MHL A;  4RLB A;  4D64 A;  2OMF A;  3AA6 A;  2KZ7 B;  3JCU O;  4UB8 O;  3FYX A;  8PRN A;  5GTI O;  2YNK A;  2YPV A;  3AAA B;  1Q9F A;  2AXT O;  1THQ A;  4FUV A;  3POQ A;  5FVN A;  3SYS A;  3SY9 A;  4U9C A;  2ERV A;  3KVD D;  4LSI A;  4AFK A;  1HXT A;  1PHO A;  2R8A A;  1HXX A;  3DA3 A;  2R4O A;  3DZM A;  4JFB A;  4UB6 O;  5E79 O;  4C4V A;  2X27 X;  4RL9 A;  4D5U A;  2JQY A;  3LK2 A;  2R4P A;  3AA1 A;  4QQ1 A;  4GF4 A;  1T16 A;  1T1L A;  3AAE B;  1E54 A;  2N2M A;  3LK4 1;  1ZHX A;  4JCH A;  4FMS A;  3EMN X;  4K3B A;  1PRN A;  3KZI O;  1ZHZ A;  2J4U P;  1MM4 A;  5ADX K;  4GCP A;  4PUX A;  2XE1 A;  4FQE A;  4FT6 A;  3LK3 A;  1IZN B;  4AUI A;  4AYI D;  2R4N A;  1BH3 A;  3PGU A;  4AKR B;  3PQS A;  2K4T A;  4N75 A;  2KXP A;  2XTQ A;  2N2L A;  3POU A;  4K3C A;  4FES A;  4Z3T A;  2IWV A;  4N58 A;  2XE5 A;  4AYN A;  2ODJ A;  4FRT A;  5AFU L;  1QJ9 A;  5DL5 A;  3UU2 A;  3G7G A;  4C4V B;  1ORM A;  3VZU X;  3PRN A;  3VZT X;  6PRN A;  2WVP A;  4G75 A;  3AA1 B;  3AA7 B;  4GCS A;  4PJ0 O;  4C00 A;  5H2F O;  3HOE A;  2R4L A;  1GFM A;  2M07 A;  3AA0 B;  4FSO A;  4O4U A;  5GV0 A;  3SZV A;  5PRN A;  3LK3 B;  4RJW A;  4FOZ A;  2XG6 A;  5G39 A;  4FRX A;  1ZHT A;  2GE4 A;  4C69 X;  3SYB A;  4AYD C;  1G90 A;  7PRN A;  2KXP B;  2XTR A;  2Y0H A;  3K19 A;  3C5O A;  3LK4 2;  3AA6 B;  2FGQ X;  5TIS O;  4KR8 A;  3VE2 A;  3WI5 A;  3QRC A;  4O49 A;  4AKM A;  2F1T A;  2XMX A;  3WU2 O;  2Y0L A;  5G38 A;  2R89 A;  4IL6 O;  2JMM A; 
#chains in the Genus database with same CATH homology
 2R8A A;  2R4L A;  2R4O A;  2R88 A;  3DWN A;  2R4N A;  3PGS A;  3PF1 A;  3PGR A;  3DWO X;  3PGU A;  2R4P A;  3BRZ A;  3BRY A;  2R89 A;  1T16 A;  3BS0 A;  1T1L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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