4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
3T24A 1HXTA 2Y0HA 3HWBA 2OMFA 2ZLDA 4FOZA 3FYXA 4BUMX 1H6S1 2J1NA 1PHOA 3SY9A 8PRNA 4FRXA 1MPFA 2QTKA 3A2SX 3PORA 3UU2A 2PORA 1PRNA 2XE1A 5DL8A 3VY9X 4KRAA 1GFOA 3VY8X 3UPGA 4AUIA 3SY7A 4RJXA 4FMSA 2XE2A 2XE5A 4GCSA 4KR4A 4FRTA 4FSPA 1E54A 2ZFGA 1OSMA 4GCPA 1BT9A 4LSIA 4C69X 4D65A 3JTYA 3PRNA 2ODJA 2Y2XA 1GFQA 5DL7A 3T20A 3K19A 4D64A 5DL5A 1HXUA 3VZUX 4D5UA 3POUA 4LSFA 3HW9A 2PRNA 7PRNA 4LSEA 1GFPA 3VZWX 3EMNX 2XE3A 1HXXA 3SYSA 1GFNA 1GFMA 4KR8A 3T0SA 3VZTX 2J4UP 4JFBA 3SZVA 5PRNA 1BH3A 4LSHA 4FSOA 3POQA 1OPFA 3SYBA 5DL6A 2Y0KA 6PRNA 5JDPA 3WI4A 2Y0LA 4FT6A 3SZDA 3O0EA 3NSGA 2XG6A 4GCQA 2FGRA 4RJWA 3WI5A 2FGQX 2K4TA 2O4VA 5FVNA 3POXA
chains in the Genus database with same CATH superfamily
1QJ8A 3T24A 3AA1B 3AA1A 1HXTA 2Y0HA 3G7GA 3HWBA 4AYNA 2OMFA 2YNKA 3AAEB 2ZLDA 4FESA 4FOZA 1ORMA 3FYXA 4FZLA 1H6S1 2IWVA 4U9CA 4BUMX 4PJ0O 2J1NA 1PHOA 3DZMA 4PUXA 4O3WA 3SY9A 3JCUO 3C5OA 8PRNA 1ZHTA 1MPFA 4FRXA 2QTKA 2M06A 3A2SX 3PORA 3V8UA 3UU2A 2W80C 4XNKA 1MM4A 2PORA 1PRNA 4FUVA 2XE1A 1BXWA 4O49A 5H2FO 2WJQA 4E1SA 2R89A 5DL8A 3VY9X 4KRAA 4C00A 1Q9GA 5B66O 4GF4A 5ADXL 1GFOA 3VY8X 3LK42 4E1TA 5G39A 3UPGA 3HOEA 4AUIA 2XTRA 3AAAB 4RJXA 3SY7A 4FMSA 2XE2A 2XE5A 3AAEA 3DWOX 4GCSA 4FRTA 1IZNA 4KR4A 1E54A 3DA4A 4FSPA 4N59A 2X27X 4FZNA 5G38A 3GP6A 2ZFGA 1OSMA 2W81C 3VE2A 4GCPA 2N2LA 4AFKA 2GE4A 1BT9A 3LK2B 4K3CA 4XNLA 1ZHWA 4LSIA 2M07A 5GV0A 4C69X 4D65A 3JTYA 2JMMA 4K3BA 3WU2O 4B61A 3AA0B 1T1LA 3PRNA 2ODJA 2Y2XA 1GFQA 2XTQA 5DL7A 1ZHYA 3T20A 3K19A 3A0HO 1G90A 4RLBA 4D64A 3AA7A 5DL5A 1QJ9A 2MHLA 2R4PA 4G75A 2KDYA 1HXUA 3VZUX 1Q9FA 2JQYA 3PQUA 4D5UA 5GTHO 3POUA 2Y7SA 2R4OA 4N74A 1QJPA 5T5FA 4AYEC 4QQ1A 2ERVA 3NJTA 3PGUA 2YPVA 2KXPB 2AXTO 3BRYA 5B5EO 5D5DA 2F1VA 3BRZA 3UAQA 1THQA 4LSFA 3QRCA 3HW9A 4UB6O 5EE2A 4IL6O 2IWWA 2PRNA 5ADXK 7PRNA 5GTIO 4AYDC 5IYUA 4O3ZA 3AA6A 4LSEA 1YS5A 1GFPA 3VZWX 4O3YA 4GHBA 3EMNX 3PGSA 2XE3A 3PGRA 4CTDA 1HXXA 1P4TA 5G3AA 3SYSA 2F1CX 3LK41 5G26A 1GFNA 3QRAA 3VE1A 3TZGA 2R8AA 3DWNA 2K0LA 2KZ7B 4Z3TA 2KZ7A 3AAAA 1GFMA 2MNHA 3LK3B 1S5LO 3AA7B 3AA6B 4KR8A 3T0SA 4AYID 3VZTX 3RBHA 1ZHZA 2X9KA 4UB8O 3AA0A 2WVPA 4AZLA 2J4UP 3DA3A 4RL9A 4JFBA 3SZVA 5AFUL 4N75A 2R4LA 3KZIO 4PR7A 1IZNB 2F1TA 2KC0A 3BS0A 4G76A 4AYMC 5PRNA 1BH3A 4LSHA 4FSOA 3POQA 4C4VA 1OPFA 3SYBA 2R88A 3HOLA 5DL6A 5KAFO 1ZHXA 3KVDD 4AKRB 2Y0KA 4FZMA 5AFUK 4RLCA 6PRNA 5JDPA 3WI4A 2Y0LA 4FT6A 4O4XA 3O0EA 3SZDA 3PQSA 4AKRA 5E79O 3PF1A 4AKMA 3NSGA 2XG6A 3A0BO 4C4VB 4JCHA 4GCQA 2FGRA 2LFUA 1T16A 2LHFA 2N2MA 4RJWA 5KAIO 5TISO 3WI5A 2FGQX 2K4TA 2O4VA 3LK3A 3POXA 4N58A 4O4UA 1MM5A 5FVNA 4F4BA 4O3XB 4FQEA 2XMXA 2R4NA 3LK2A 2KXPA 2WJRA
chains in the Genus database with same CATH topology
1QJ8A 3T24A 3AA1B 3AA1A 1HXTA 2Y0HA 3G7GA 3HWBA 4AYNA 2OMFA 2YNKA 3AAEB 2ZLDA 4FESA 4FOZA 1ORMA 3FYXA 4FZLA 1H6S1 4U9CA 3RBHA 4BUMX 2J1NA 1PHOA 4PUXA 3SY9A 4O3WA 8PRNA 3C5OA 1ZHTA 1MPFA 4FRXA 2QTKA 2M06A 3A2SX 3PORA 3V8UA 3UU2A 2W80C 4XNKA 1MM4A 2PORA 1PRNA 4FUVA 2XE1A 1BXWA 4O49A 4E1SA 5DL8A 3VY9X 4KRAA 1Q9GA 4GF4A 5ADXL 1GFOA 3VY8X 3LK42 4E1TA 3UPGA 3HOEA 4AUIA 2XTRA 3AAAB 4RJXA 3SY7A 4FMSA 2XE2A 2XE5A 3AAEA 4GCSA 4KR4A 4FRTA 1IZNA 4N59A 1E54A 3DA4A 4FSPA 2X27X 4FZNA 3GP6A 2ZFGA 1OSMA 2W81C 3VE2A 4GCPA 2N2LA 4AFKA 2GE4A 1BT9A 3LK2B 4XNLA 1ZHWA 4LSIA 2M07A 5GV0A 4C69X 4D65A 3JTYA 2JMMA 4B61A 3AA0B 3PRNA 2ODJA 2Y2XA 1GFQA 2XTQA 5DL7A 1ZHYA 3T20A 3K19A 1G90A 4RLBA 4D64A 3AA7A 5DL5A 1QJ9A 2MHLA 4G75A 2KDYA 1HXUA 3VZUX 1Q9FA 3PQUA 4D5UA 3POUA 2Y7SA 5T5FA 1QJPA 4AYEC 4QQ1A 2ERVA 2YPVA 2KXPB 5D5DA 2F1VA 3UAQA 1THQA 4LSFA 3QRCA 3HW9A 5EE2A 2PRNA 5ADXK 7PRNA 4AYDC 5IYUA 4O3ZA 3AA6A 4LSEA 1YS5A 1GFPA 3VZWX 4O3YA 4GHBA 3EMNX 2XE3A 1HXXA 1P4TA 3SYSA 3LK41 5G26A 1GFNA 3QRAA 3VE1A 3TZGA 2K0LA 2KZ7B 4Z3TA 2KZ7A 3AAAA 1GFMA 2MNHA 3LK3B 3AA7B 3AA6B 4KR8A 3T0SA 4AYID 3VZTX 1ZHZA 4AZLA 3AA0A 2J4UP 3DA3A 4RL9A 4JFBA 3SZVA 5AFUL 1IZNB 2F1TA 2KC0A 4G76A 4AYMC 5PRNA 1BH3A 4LSHA 4FSOA 3POQA 1OPFA 3SYBA 3HOLA 5DL6A 4AKRB 1ZHXA 3KVDD 2Y0KA 4FZMA 5AFUK 4RLCA 6PRNA 5JDPA 3WI4A 2Y0LA 4FT6A 4O4XA 3O0EA 3SZDA 3PQSA 4AKRA 4AKMA 3NSGA 2XG6A 4JCHA 4GCQA 2FGRA 2LFUA 2LHFA 2N2MA 4RJWA 3WI5A 2FGQX 2K4TA 2O4VA 3LK3A 3POXA 4N58A 4O4UA 1MM5A 5FVNA 4F4BA 4O3XB 2XMXA 3LK2A 2KXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T24 A;  1HXT A;  2Y0H A;  3HWB A;  2OMF A;  2ZLD A;  4FOZ A;  3FYX A;  4BUM X;  1H6S 1;  2J1N A;  1PHO A;  3SY9 A;  8PRN A;  4FRX A;  1MPF A;  2QTK A;  3A2S X;  3POR A;  3UU2 A;  2POR A;  1PRN A;  2XE1 A;  5DL8 A;  3VY9 X;  4KRA A;  1GFO A;  3VY8 X;  3UPG A;  4AUI A;  3SY7 A;  4RJX A;  4FMS A;  2XE2 A;  2XE5 A;  4GCS A;  4KR4 A;  4FRT A;  4FSP A;  1E54 A;  2ZFG A;  1OSM A;  4GCP A;  1BT9 A;  4LSI A;  4C69 X;  4D65 A;  3JTY A;  3PRN A;  2ODJ A;  2Y2X A;  1GFQ A;  5DL7 A;  3T20 A;  3K19 A;  4D64 A;  5DL5 A;  1HXU A;  3VZU X;  4D5U A;  3POU A;  4LSF A;  3HW9 A;  2PRN A;  7PRN A;  4LSE A;  1GFP A;  3VZW X;  3EMN X;  2XE3 A;  1HXX A;  3SYS A;  1GFN A;  1GFM A;  4KR8 A;  3T0S A;  3VZT X;  2J4U P;  4JFB A;  3SZV A;  5PRN A;  1BH3 A;  4LSH A;  4FSO A;  3POQ A;  1OPF A;  3SYB A;  5DL6 A;  2Y0K A;  6PRN A;  5JDP A;  3WI4 A;  2Y0L A;  4FT6 A;  3SZD A;  3O0E A;  3NSG A;  2XG6 A;  4GCQ A;  2FGR A;  4RJW A;  3WI5 A;  2FGQ X;  2K4T A;  2O4V A;  5FVN A;  3POX A; 
#chains in the Genus database with same CATH topology
 1QJ8 A;  3T24 A;  3AA1 B;  3AA1 A;  1HXT A;  2Y0H A;  3G7G A;  3HWB A;  4AYN A;  2OMF A;  2YNK A;  3AAE B;  2ZLD A;  4FES A;  4FOZ A;  1ORM A;  3FYX A;  4FZL A;  1H6S 1;  2IWV A;  4U9C A;  4BUM X;  4PJ0 O;  2J1N A;  1PHO A;  3DZM A;  4PUX A;  4O3W A;  3SY9 A;  3JCU O;  3C5O A;  8PRN A;  1ZHT A;  1MPF A;  4FRX A;  2QTK A;  2M06 A;  3A2S X;  3POR A;  3V8U A;  3UU2 A;  2W80 C;  4XNK A;  1MM4 A;  2POR A;  1PRN A;  4FUV A;  2XE1 A;  1BXW A;  4O49 A;  5H2F O;  2WJQ A;  4E1S A;  2R89 A;  5DL8 A;  3VY9 X;  4KRA A;  4C00 A;  1Q9G A;  5B66 O;  4GF4 A;  5ADX L;  1GFO A;  3VY8 X;  3LK4 2;  4E1T A;  5G39 A;  3UPG A;  3HOE A;  4AUI A;  2XTR A;  3AAA B;  4RJX A;  3SY7 A;  4FMS A;  2XE2 A;  2XE5 A;  3AAE A;  3DWO X;  4GCS A;  4FRT A;  1IZN A;  4KR4 A;  1E54 A;  3DA4 A;  4FSP A;  4N59 A;  2X27 X;  4FZN A;  5G38 A;  3GP6 A;  2ZFG A;  1OSM A;  2W81 C;  3VE2 A;  4GCP A;  2N2L A;  4AFK A;  2GE4 A;  1BT9 A;  3LK2 B;  4K3C A;  4XNL A;  1ZHW A;  4LSI A;  2M07 A;  5GV0 A;  4C69 X;  4D65 A;  3JTY A;  2JMM A;  4K3B A;  3WU2 O;  4B61 A;  3AA0 B;  1T1L A;  3PRN A;  2ODJ A;  2Y2X A;  1GFQ A;  2XTQ A;  5DL7 A;  1ZHY A;  3T20 A;  3K19 A;  3A0H O;  1G90 A;  4RLB A;  4D64 A;  3AA7 A;  5DL5 A;  1QJ9 A;  2MHL A;  2R4P A;  4G75 A;  2KDY A;  1HXU A;  3VZU X;  1Q9F A;  2JQY A;  3PQU A;  4D5U A;  5GTH O;  3POU A;  2Y7S A;  2R4O A;  4N74 A;  1QJP A;  5T5F A;  4AYE C;  4QQ1 A;  2ERV A;  3NJT A;  3PGU A;  2YPV A;  2KXP B;  2AXT O;  3BRY A;  5B5E O;  5D5D A;  2F1V A;  3BRZ A;  3UAQ A;  1THQ A;  4LSF A;  3QRC A;  3HW9 A;  4UB6 O;  5EE2 A;  4IL6 O;  2IWW A;  2PRN A;  5ADX K;  7PRN A;  5GTI O;  4AYD C;  5IYU A;  4O3Z A;  3AA6 A;  4LSE A;  1YS5 A;  1GFP A;  3VZW X;  4O3Y A;  4GHB A;  3EMN X;  3PGS A;  2XE3 A;  3PGR A;  4CTD A;  1HXX A;  1P4T A;  5G3A A;  3SYS A;  2F1C X;  3LK4 1;  5G26 A;  1GFN A;  3QRA A;  3VE1 A;  3TZG A;  2R8A A;  3DWN A;  2K0L A;  2KZ7 B;  4Z3T A;  2KZ7 A;  3AAA A;  1GFM A;  2MNH A;  3LK3 B;  1S5L O;  3AA7 B;  3AA6 B;  4KR8 A;  3T0S A;  4AYI D;  3VZT X;  3RBH A;  1ZHZ A;  2X9K A;  4UB8 O;  3AA0 A;  2WVP A;  4AZL A;  2J4U P;  3DA3 A;  4RL9 A;  4JFB A;  3SZV A;  5AFU L;  4N75 A;  2R4L A;  3KZI O;  4PR7 A;  1IZN B;  2F1T A;  2KC0 A;  3BS0 A;  4G76 A;  4AYM C;  5PRN A;  1BH3 A;  4LSH A;  4FSO A;  3POQ A;  4C4V A;  1OPF A;  3SYB A;  2R88 A;  3HOL A;  5DL6 A;  5KAF O;  1ZHX A;  3KVD D;  4AKR B;  2Y0K A;  4FZM A;  5AFU K;  4RLC A;  6PRN A;  5JDP A;  3WI4 A;  2Y0L A;  4FT6 A;  4O4X A;  3O0E A;  3SZD A;  3PQS A;  4AKR A;  5E79 O;  3PF1 A;  4AKM A;  3NSG A;  2XG6 A;  3A0B O;  4C4V B;  4JCH A;  4GCQ A;  2FGR A;  2LFU A;  1T16 A;  2LHF A;  2N2M A;  4RJW A;  5KAI O;  5TIS O;  3WI5 A;  2FGQ X;  2K4T A;  2O4V A;  3LK3 A;  3POX A;  4N58 A;  4O4U A;  1MM5 A;  5FVN A;  4F4B A;  4O3X B;  4FQE A;  2XMX A;  2R4N A;  3LK2 A;  2KXP A;  2WJR A; 
#chains in the Genus database with same CATH homology
 1QJ8 A;  3T24 A;  3AA1 B;  3AA1 A;  1HXT A;  2Y0H A;  3G7G A;  3HWB A;  4AYN A;  2OMF A;  2YNK A;  3AAE B;  2ZLD A;  4FES A;  4FOZ A;  1ORM A;  3FYX A;  4FZL A;  1H6S 1;  4U9C A;  3RBH A;  4BUM X;  2J1N A;  1PHO A;  4PUX A;  3SY9 A;  4O3W A;  8PRN A;  3C5O A;  1ZHT A;  1MPF A;  4FRX A;  2QTK A;  2M06 A;  3A2S X;  3POR A;  3V8U A;  3UU2 A;  2W80 C;  4XNK A;  1MM4 A;  2POR A;  1PRN A;  4FUV A;  2XE1 A;  1BXW A;  4O49 A;  4E1S A;  5DL8 A;  3VY9 X;  4KRA A;  1Q9G A;  4GF4 A;  5ADX L;  1GFO A;  3VY8 X;  3LK4 2;  4E1T A;  3UPG A;  3HOE A;  4AUI A;  2XTR A;  3AAA B;  4RJX A;  3SY7 A;  4FMS A;  2XE2 A;  2XE5 A;  3AAE A;  4GCS A;  4KR4 A;  4FRT A;  1IZN A;  4N59 A;  1E54 A;  3DA4 A;  4FSP A;  2X27 X;  4FZN A;  3GP6 A;  2ZFG A;  1OSM A;  2W81 C;  3VE2 A;  4GCP A;  2N2L A;  4AFK A;  2GE4 A;  1BT9 A;  3LK2 B;  4XNL A;  1ZHW A;  4LSI A;  2M07 A;  5GV0 A;  4C69 X;  4D65 A;  3JTY A;  2JMM A;  4B61 A;  3AA0 B;  3PRN A;  2ODJ A;  2Y2X A;  1GFQ A;  2XTQ A;  5DL7 A;  1ZHY A;  3T20 A;  3K19 A;  1G90 A;  4RLB A;  4D64 A;  3AA7 A;  5DL5 A;  1QJ9 A;  2MHL A;  4G75 A;  2KDY A;  1HXU A;  3VZU X;  1Q9F A;  3PQU A;  4D5U A;  3POU A;  2Y7S A;  5T5F A;  1QJP A;  4AYE C;  4QQ1 A;  2ERV A;  2YPV A;  2KXP B;  5D5D A;  2F1V A;  3UAQ A;  1THQ A;  4LSF A;  3QRC A;  3HW9 A;  5EE2 A;  2PRN A;  5ADX K;  7PRN A;  4AYD C;  5IYU A;  4O3Z A;  3AA6 A;  4LSE A;  1YS5 A;  1GFP A;  3VZW X;  4O3Y A;  4GHB A;  3EMN X;  2XE3 A;  1HXX A;  1P4T A;  3SYS A;  3LK4 1;  5G26 A;  1GFN A;  3QRA A;  3VE1 A;  3TZG A;  2K0L A;  2KZ7 B;  4Z3T A;  2KZ7 A;  3AAA A;  1GFM A;  2MNH A;  3LK3 B;  3AA7 B;  3AA6 B;  4KR8 A;  3T0S A;  4AYI D;  3VZT X;  1ZHZ A;  4AZL A;  3AA0 A;  2J4U P;  3DA3 A;  4RL9 A;  4JFB A;  3SZV A;  5AFU L;  1IZN B;  2F1T A;  2KC0 A;  4G76 A;  4AYM C;  5PRN A;  1BH3 A;  4LSH A;  4FSO A;  3POQ A;  1OPF A;  3SYB A;  3HOL A;  5DL6 A;  4AKR B;  1ZHX A;  3KVD D;  2Y0K A;  4FZM A;  5AFU K;  4RLC A;  6PRN A;  5JDP A;  3WI4 A;  2Y0L A;  4FT6 A;  4O4X A;  3O0E A;  3SZD A;  3PQS A;  4AKR A;  4AKM A;  3NSG A;  2XG6 A;  4JCH A;  4GCQ A;  2FGR A;  2LFU A;  2LHF A;  2N2M A;  4RJW A;  3WI5 A;  2FGQ X;  2K4T A;  2O4V A;  3LK3 A;  3POX A;  4N58 A;  4O4U A;  1MM5 A;  5FVN A;  4F4B A;  4O3X B;  2XMX A;  3LK2 A;  2KXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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