4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
2Y0HA 1PRNA 3POXA 2O4VA 3HW9A 1PHOA 3JTYA 4KR4A 4D5UA 1GFPA 3SY9A 1OPFA 4JFBA 4D65A 2Y0KA 2ODJA 4FT6A 2OMFA 3O0EA 1HXTA 1HXXA 1MPFA 3EMNX 8PRNA 5JDPA 2XE3A 7PRNA 4RJXA 2ZFGA 3VZUX 1HXUA 4D64A 2FGQX 4FRTA 4FMSA 3SY7A 3SZDA 4FSOA 4C69X 2XG6A 4AUIA 3T0SA 4FSPA 3VY8X 1OSMA 4LSEA 5PRNA 3PORA 5DL5A 2J4UP 2XE5A 1BH3A 3PRNA 2XE1A 1BT9A 1GFMA 4KRAA 4FOZA 5FVNA 3T20A 1GFOA 3POUA 2XE2A 4KR8A 3A2SX 2QTKA 3NSGA 3K19A 3FYXA 5DL8A 2PORA 5DL7A 5DL6A 3UU2A 3VZTX 3WI5A 4FRXA 1E54A 3UPGA 2PRNA 3SZVA 6PRNA 3VY9X 3SYBA 4GCQA 3WI4A 3POQA 1GFNA 4LSFA 2Y2XA 3SYSA 2Y0LA 4LSHA 1H6S1 4RJWA 2K4TA 4GCSA 2J1NA 3HWBA 4GCPA 2FGRA 3T24A 3VZWX 1GFQA 4LSIA 2ZLDA 4BUMX
chains in the Genus database with same CATH superfamily
2F1CX 4FZNA 2KZ7B 3TZGA 2F1VA 2Y0HA 1PRNA 3POXA 5KAFO 2O4VA 3HW9A 1PHOA 3BS0A 3PGSA 3JTYA 1QJ9A 1P4TA 4KR4A 4D5UA 1GFPA 1QJ8A 4K3CA 5EE2A 4AZLA 4CTDA 3AA0B 5B66O 1THQA 3C5OA 5H2FO 2KZ7A 3VE2A 3SY9A 3A0BO 4GHBA 2W80C 3HOEA 2R8AA 2F1TA 4O3WA 1OPFA 4XNKA 4JFBA 4K3BA 4D65A 2Y0KA 4N74A 2ODJA 5IYUA 4RLCA 2R88A 3PQSA 2K0LA 2OMFA 1T1LA 1HXTA 3BRZA 1HXXA 1MPFA 1ZHWA 2YPVA 3AA0A 3EMNX 3O0EA 4FUVA 3GP6A 4UB8O 4G75A 8PRNA 3RBHA 5ADXK 3V8UA 2R4PA 5JDPA 2XE3A 4PJ0O 4N75A 7PRNA 5GTIO 4RJXA 5G38A 2M06A 1G90A 2ZFGA 3VZUX 4G76A 3PF1A 1HXUA 1Q9FA 3AAEB 5KAIO 4D64A 4UB6O 3KVDD 1MM4A 2FGQX 4FRTA 3AAAB 4FMSA 2WJRA 3QRCA 3SY7A 3SZDA 4FSOA 4O3ZA 4AFKA 4AYNA 5TISO 4C69X 3LK3B 2MNHA 3AA6B 2IWVA 2XG6A 3JCUO 4N58A 2XMXA 4AUIA 1S5LO 3G7GA 4FSPA 3AAEA 2W81C 4FZLA 4IL6O 4PR7A 3T0SA 3VY8X 1OSMA 4LSEA 4FQEA 3WU2O 5AFUL 3AAAA 3VE1A 5PRNA 4AKMA 4O4XA 3PORA 2AXTO 4FT6A 5DL5A 2J4UP 2XE5A 3KZIO 4O3XB 3DA3A 2YNKA 1BH3A 3LK3A 3AA6A 2XE1A 3PRNA 4U9CA 5G39A 1BT9A 4E1SA 1GFMA 2XTQA 4GF4A 3AA1B 4FOZA 4KRAA 4PUXA 5T5FA 3LK41 5FVNA 3T20A 1ZHTA 1GFOA 3POUA 1ORMA 2WJQA 2XE2A 3A0HO 2M07A 4KR8A 4AYEC 3A2SX 4B61A 2QTKA 5B5EO 2GE4A 3NSGA 3K19A 4O3YA 2LFUA 3FYXA 3DWNA 4XNLA 3LK2B 3AA1A 3AA7B 2Y7SA 5DL8A 4F4BA 4AYMC 2PORA 4O49A 2LHFA 2R4NA 5DL6A 3PGRA 5DL7A 1YS5A 2N2LA 5G3AA 4QQ1A 5D5DA 3UU2A 2XTRA 1ZHXA 1MM5A 5GTHO 3NJTA 3VZTX 1ZHZA 3LK2A 4AKRB 3AA7A 3DWOX 3WI5A 4Z3TA 1BXWA 2MHLA 3HOLA 4FRXA 1E54A 4N59A 5ADXL 1Q9GA 3UPGA 4O4UA 2PRNA 2KDYA 3SZVA 6PRNA 2IWWA 3VY9X 3SYBA 2R4LA 3DA4A 2X27X 1ZHYA 4GCQA 4C4VB 3PGUA 4JCHA 3POQA 3WI4A 1IZNB 4AKRA 1GFNA 4LSFA 3DZMA 2Y2XA 2WVPA 3QRAA 3SYSA 2R89A 1T16A 2Y0LA 2KXPB 1QJPA 4LSHA 4RL9A 2ERVA 1H6S1 2JQYA 4AYID 4RJWA 5E79O 2R4OA 2X9KA 4C4VA 2K4TA 3LK42 4FESA 4GCSA 4RLBA 5G26A 1IZNA 3UAQA 5AFUK 2J1NA 3BRYA 3HWBA 4GCPA 2FGRA 2JMMA 2KC0A 2KXPA 3T24A 4C00A 3VZWX 1GFQA 4E1TA 3PQUA 4FZMA 5GV0A 4AYDC 2N2MA 4LSIA 2ZLDA 4BUMX
chains in the Genus database with same CATH topology
4FZNA 2KZ7B 3TZGA 2F1VA 2Y0HA 1PRNA 3POXA 2O4VA 3HW9A 1PHOA 3JTYA 1QJ9A 1P4TA 4KR4A 4D5UA 1GFPA 1QJ8A 5EE2A 4AZLA 3AA0B 1THQA 3C5OA 2KZ7A 3VE2A 3SY9A 4GHBA 2W80C 3HOEA 4XNKA 2F1TA 4O3WA 1OPFA 4JFBA 4D65A 2Y0KA 5IYUA 2ODJA 4RLCA 3PQSA 2K0LA 2OMFA 3O0EA 1HXTA 4FT6A 1HXXA 1MPFA 1ZHWA 2YPVA 3AA0A 3EMNX 4FUVA 3GP6A 8PRNA 4G75A 5ADXK 3RBHA 3V8UA 5JDPA 2XE3A 7PRNA 4RJXA 2M06A 1G90A 2ZFGA 3VZUX 4G76A 1HXUA 1Q9FA 3AAEB 4D64A 3KVDD 1MM4A 2FGQX 4FRTA 3AAAB 4FMSA 3QRCA 3SY7A 3SZDA 4FSOA 4O3ZA 4AFKA 4AYNA 4C69X 3LK3B 2MNHA 3AA6B 2XG6A 4N58A 4AUIA 2XMXA 3G7GA 4FSPA 3AAEA 2W81C 4FZLA 3T0SA 3VY8X 5AFUL 1OSMA 4LSEA 3AAAA 3VE1A 5PRNA 4AKMA 4O4XA 3PORA 5DL5A 2J4UP 2XE5A 4O3XB 3DA3A 2YNKA 1BH3A 3LK3A 3AA6A 2XE1A 3PRNA 4U9CA 4E1SA 1BT9A 1GFMA 2XTQA 4GF4A 3AA1B 4FOZA 4KRAA 4PUXA 5T5FA 3LK41 5FVNA 3T20A 1ZHTA 1GFOA 3POUA 1ORMA 2XE2A 2M07A 4KR8A 4AYEC 3A2SX 4B61A 2QTKA 2GE4A 3NSGA 3K19A 4O3YA 2LFUA 3FYXA 4XNLA 3LK2B 3AA1A 3AA7B 2Y7SA 5DL8A 4F4BA 4AYMC 2PORA 4O49A 2LHFA 5DL7A 5DL6A 1YS5A 2N2LA 4QQ1A 5D5DA 3UU2A 2XTRA 1ZHXA 1MM5A 3VZTX 1ZHZA 3LK2A 4AKRB 3AA7A 3WI5A 4Z3TA 1BXWA 2MHLA 3HOLA 4FRXA 1E54A 4N59A 5ADXL 1Q9GA 3UPGA 4O4UA 2PRNA 2KDYA 3SZVA 6PRNA 3VY9X 3SYBA 3DA4A 2X27X 1ZHYA 4GCQA 4JCHA 3WI4A 3POQA 1IZNB 4AKRA 1GFNA 4LSFA 2Y2XA 3QRAA 3SYSA 2Y0LA 2KXPB 1QJPA 4LSHA 4RL9A 2ERVA 1H6S1 4AYID 4RJWA 2K4TA 3LK42 4FESA 4GCSA 4RLBA 5G26A 1IZNA 3UAQA 5AFUK 2J1NA 3HWBA 4GCPA 2FGRA 2JMMA 2KC0A 2KXPA 3T24A 3VZWX 1GFQA 4E1TA 3PQUA 4FZMA 5GV0A 4AYDC 2N2MA 4LSIA 2ZLDA 4BUMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0H A;  1PRN A;  3POX A;  2O4V A;  3HW9 A;  1PHO A;  3JTY A;  4KR4 A;  4D5U A;  1GFP A;  3SY9 A;  1OPF A;  4JFB A;  4D65 A;  2Y0K A;  2ODJ A;  4FT6 A;  2OMF A;  3O0E A;  1HXT A;  1HXX A;  1MPF A;  3EMN X;  8PRN A;  5JDP A;  2XE3 A;  7PRN A;  4RJX A;  2ZFG A;  3VZU X;  1HXU A;  4D64 A;  2FGQ X;  4FRT A;  4FMS A;  3SY7 A;  3SZD A;  4FSO A;  4C69 X;  2XG6 A;  4AUI A;  3T0S A;  4FSP A;  3VY8 X;  1OSM A;  4LSE A;  5PRN A;  3POR A;  5DL5 A;  2J4U P;  2XE5 A;  1BH3 A;  3PRN A;  2XE1 A;  1BT9 A;  1GFM A;  4KRA A;  4FOZ A;  5FVN A;  3T20 A;  1GFO A;  3POU A;  2XE2 A;  4KR8 A;  3A2S X;  2QTK A;  3NSG A;  3K19 A;  3FYX A;  5DL8 A;  2POR A;  5DL7 A;  5DL6 A;  3UU2 A;  3VZT X;  3WI5 A;  4FRX A;  1E54 A;  3UPG A;  2PRN A;  3SZV A;  6PRN A;  3VY9 X;  3SYB A;  4GCQ A;  3WI4 A;  3POQ A;  1GFN A;  4LSF A;  2Y2X A;  3SYS A;  2Y0L A;  4LSH A;  1H6S 1;  4RJW A;  2K4T A;  4GCS A;  2J1N A;  3HWB A;  4GCP A;  2FGR A;  3T24 A;  3VZW X;  1GFQ A;  4LSI A;  2ZLD A;  4BUM X; 
#chains in the Genus database with same CATH topology
 2F1C X;  4FZN A;  2KZ7 B;  3TZG A;  2F1V A;  2Y0H A;  1PRN A;  3POX A;  5KAF O;  2O4V A;  3HW9 A;  1PHO A;  3BS0 A;  3PGS A;  3JTY A;  1QJ9 A;  1P4T A;  4KR4 A;  4D5U A;  1GFP A;  1QJ8 A;  4K3C A;  5EE2 A;  4AZL A;  4CTD A;  3AA0 B;  5B66 O;  1THQ A;  3C5O A;  5H2F O;  2KZ7 A;  3VE2 A;  3SY9 A;  3A0B O;  4GHB A;  2W80 C;  3HOE A;  2R8A A;  2F1T A;  4O3W A;  1OPF A;  4XNK A;  4JFB A;  4K3B A;  4D65 A;  2Y0K A;  4N74 A;  2ODJ A;  5IYU A;  4RLC A;  2R88 A;  3PQS A;  2K0L A;  2OMF A;  1T1L A;  1HXT A;  3BRZ A;  1HXX A;  1MPF A;  1ZHW A;  2YPV A;  3AA0 A;  3EMN X;  3O0E A;  4FUV A;  3GP6 A;  4UB8 O;  4G75 A;  8PRN A;  3RBH A;  5ADX K;  3V8U A;  2R4P A;  5JDP A;  2XE3 A;  4PJ0 O;  4N75 A;  7PRN A;  5GTI O;  4RJX A;  5G38 A;  2M06 A;  1G90 A;  2ZFG A;  3VZU X;  4G76 A;  3PF1 A;  1HXU A;  1Q9F A;  3AAE B;  5KAI O;  4D64 A;  4UB6 O;  3KVD D;  1MM4 A;  2FGQ X;  4FRT A;  3AAA B;  4FMS A;  2WJR A;  3QRC A;  3SY7 A;  3SZD A;  4FSO A;  4O3Z A;  4AFK A;  4AYN A;  5TIS O;  4C69 X;  3LK3 B;  2MNH A;  3AA6 B;  2IWV A;  2XG6 A;  3JCU O;  4N58 A;  2XMX A;  4AUI A;  1S5L O;  3G7G A;  4FSP A;  3AAE A;  2W81 C;  4FZL A;  4IL6 O;  4PR7 A;  3T0S A;  3VY8 X;  1OSM A;  4LSE A;  4FQE A;  3WU2 O;  5AFU L;  3AAA A;  3VE1 A;  5PRN A;  4AKM A;  4O4X A;  3POR A;  2AXT O;  4FT6 A;  5DL5 A;  2J4U P;  2XE5 A;  3KZI O;  4O3X B;  3DA3 A;  2YNK A;  1BH3 A;  3LK3 A;  3AA6 A;  2XE1 A;  3PRN A;  4U9C A;  5G39 A;  1BT9 A;  4E1S A;  1GFM A;  2XTQ A;  4GF4 A;  3AA1 B;  4FOZ A;  4KRA A;  4PUX A;  5T5F A;  3LK4 1;  5FVN A;  3T20 A;  1ZHT A;  1GFO A;  3POU A;  1ORM A;  2WJQ A;  2XE2 A;  3A0H O;  2M07 A;  4KR8 A;  4AYE C;  3A2S X;  4B61 A;  2QTK A;  5B5E O;  2GE4 A;  3NSG A;  3K19 A;  4O3Y A;  2LFU A;  3FYX A;  3DWN A;  4XNL A;  3LK2 B;  3AA1 A;  3AA7 B;  2Y7S A;  5DL8 A;  4F4B A;  4AYM C;  2POR A;  4O49 A;  2LHF A;  2R4N A;  5DL6 A;  3PGR A;  5DL7 A;  1YS5 A;  2N2L A;  5G3A A;  4QQ1 A;  5D5D A;  3UU2 A;  2XTR A;  1ZHX A;  1MM5 A;  5GTH O;  3NJT A;  3VZT X;  1ZHZ A;  3LK2 A;  4AKR B;  3AA7 A;  3DWO X;  3WI5 A;  4Z3T A;  1BXW A;  2MHL A;  3HOL A;  4FRX A;  1E54 A;  4N59 A;  5ADX L;  1Q9G A;  3UPG A;  4O4U A;  2PRN A;  2KDY A;  3SZV A;  6PRN A;  2IWW A;  3VY9 X;  3SYB A;  2R4L A;  3DA4 A;  2X27 X;  1ZHY A;  4GCQ A;  4C4V B;  3PGU A;  4JCH A;  3POQ A;  3WI4 A;  1IZN B;  4AKR A;  1GFN A;  4LSF A;  3DZM A;  2Y2X A;  2WVP A;  3QRA A;  3SYS A;  2R89 A;  1T16 A;  2Y0L A;  2KXP B;  1QJP A;  4LSH A;  4RL9 A;  2ERV A;  1H6S 1;  2JQY A;  4AYI D;  4RJW A;  5E79 O;  2R4O A;  2X9K A;  4C4V A;  2K4T A;  3LK4 2;  4FES A;  4GCS A;  4RLB A;  5G26 A;  1IZN A;  3UAQ A;  5AFU K;  2J1N A;  3BRY A;  3HWB A;  4GCP A;  2FGR A;  2JMM A;  2KC0 A;  2KXP A;  3T24 A;  4C00 A;  3VZW X;  1GFQ A;  4E1T A;  3PQU A;  4FZM A;  5GV0 A;  4AYD C;  2N2M A;  4LSI A;  2ZLD A;  4BUM X; 
#chains in the Genus database with same CATH homology
 4FZN A;  2KZ7 B;  3TZG A;  2F1V A;  2Y0H A;  1PRN A;  3POX A;  2O4V A;  3HW9 A;  1PHO A;  3JTY A;  1QJ9 A;  1P4T A;  4KR4 A;  4D5U A;  1GFP A;  1QJ8 A;  5EE2 A;  4AZL A;  3AA0 B;  1THQ A;  3C5O A;  2KZ7 A;  3VE2 A;  3SY9 A;  4GHB A;  2W80 C;  3HOE A;  4XNK A;  2F1T A;  4O3W A;  1OPF A;  4JFB A;  4D65 A;  2Y0K A;  5IYU A;  2ODJ A;  4RLC A;  3PQS A;  2K0L A;  2OMF A;  3O0E A;  1HXT A;  4FT6 A;  1HXX A;  1MPF A;  1ZHW A;  2YPV A;  3AA0 A;  3EMN X;  4FUV A;  3GP6 A;  8PRN A;  4G75 A;  5ADX K;  3RBH A;  3V8U A;  5JDP A;  2XE3 A;  7PRN A;  4RJX A;  2M06 A;  1G90 A;  2ZFG A;  3VZU X;  4G76 A;  1HXU A;  1Q9F A;  3AAE B;  4D64 A;  3KVD D;  1MM4 A;  2FGQ X;  4FRT A;  3AAA B;  4FMS A;  3QRC A;  3SY7 A;  3SZD A;  4FSO A;  4O3Z A;  4AFK A;  4AYN A;  4C69 X;  3LK3 B;  2MNH A;  3AA6 B;  2XG6 A;  4N58 A;  4AUI A;  2XMX A;  3G7G A;  4FSP A;  3AAE A;  2W81 C;  4FZL A;  3T0S A;  3VY8 X;  5AFU L;  1OSM A;  4LSE A;  3AAA A;  3VE1 A;  5PRN A;  4AKM A;  4O4X A;  3POR A;  5DL5 A;  2J4U P;  2XE5 A;  4O3X B;  3DA3 A;  2YNK A;  1BH3 A;  3LK3 A;  3AA6 A;  2XE1 A;  3PRN A;  4U9C A;  4E1S A;  1BT9 A;  1GFM A;  2XTQ A;  4GF4 A;  3AA1 B;  4FOZ A;  4KRA A;  4PUX A;  5T5F A;  3LK4 1;  5FVN A;  3T20 A;  1ZHT A;  1GFO A;  3POU A;  1ORM A;  2XE2 A;  2M07 A;  4KR8 A;  4AYE C;  3A2S X;  4B61 A;  2QTK A;  2GE4 A;  3NSG A;  3K19 A;  4O3Y A;  2LFU A;  3FYX A;  4XNL A;  3LK2 B;  3AA1 A;  3AA7 B;  2Y7S A;  5DL8 A;  4F4B A;  4AYM C;  2POR A;  4O49 A;  2LHF A;  5DL7 A;  5DL6 A;  1YS5 A;  2N2L A;  4QQ1 A;  5D5D A;  3UU2 A;  2XTR A;  1ZHX A;  1MM5 A;  3VZT X;  1ZHZ A;  3LK2 A;  4AKR B;  3AA7 A;  3WI5 A;  4Z3T A;  1BXW A;  2MHL A;  3HOL A;  4FRX A;  1E54 A;  4N59 A;  5ADX L;  1Q9G A;  3UPG A;  4O4U A;  2PRN A;  2KDY A;  3SZV A;  6PRN A;  3VY9 X;  3SYB A;  3DA4 A;  2X27 X;  1ZHY A;  4GCQ A;  4JCH A;  3WI4 A;  3POQ A;  1IZN B;  4AKR A;  1GFN A;  4LSF A;  2Y2X A;  3QRA A;  3SYS A;  2Y0L A;  2KXP B;  1QJP A;  4LSH A;  4RL9 A;  2ERV A;  1H6S 1;  4AYI D;  4RJW A;  2K4T A;  3LK4 2;  4FES A;  4GCS A;  4RLB A;  5G26 A;  1IZN A;  3UAQ A;  5AFU K;  2J1N A;  3HWB A;  4GCP A;  2FGR A;  2JMM A;  2KC0 A;  2KXP A;  3T24 A;  3VZW X;  1GFQ A;  4E1T A;  3PQU A;  4FZM A;  5GV0 A;  4AYD C;  2N2M A;  4LSI A;  2ZLD A;  4BUM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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