4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
3A2SX 3VY8X 3T24A 4BUMX 3UPGA 3NSGA 1OSMA 2O4VA 4KR4A 5DL5A 4GCQA 3K19A 4LSIA 3POXA 3SZVA 3SYBA 3HW9A 1HXTA 1GFMA 3VZWX 1GFNA 2Y2XA 2XE3A 3SZDA 2J4UP 4RJWA 3T20A 3POUA 3SY7A 4D5UA 4GCSA 1E54A 3EMNX 3PRNA 1BH3A 5DL6A 4KRAA 4LSHA 3UU2A 4C69X 5DL8A 1HXUA 3PORA 3SYSA 4FSOA 2ODJA 2PRNA 3VY9X 2ZFGA 4GCPA 1GFQA 5PRNA 1PRNA 5FVNA 4JFBA 1BT9A 1MPFA 5DL7A 1GFOA 3POQA 4KR8A 4LSFA 2QTKA 3VZTX 2FGQX 3WI4A 2XG6A 3FYXA 3WI5A 4FT6A 2J1NA 2OMFA 1H6S1 4D64A 1OPFA 4FSPA 1GFPA 4FRXA 1HXXA 1PHOA 8PRNA 3HWBA 2FGRA 3O0EA 3T0SA 3JTYA 4RJXA 2Y0LA 2Y0HA 3SY9A 7PRNA 5JDPA 2K4TA 6PRNA 2PORA 4FRTA 2XE2A 4FOZA 2Y0KA 4AUIA 2ZLDA 4LSEA 2XE5A 4FMSA 3VZUX 4D65A 2XE1A
chains in the Genus database with same CATH superfamily
4IL6O 5TISO 3A2SX 3AA6A 3VY8X 1ZHZA 3T24A 4B61A 4AYMC 3LK2A 2MNHA 3LK41 2KXPB 4FESA 4BUMX 4Z3TA 3UPGA 3NSGA 1ZHTA 4C4VA 3VE2A 1OSMA 2O4VA 4KR4A 4PJ0O 2N2MA 4E1SA 4K3CA 4PR7A 5DL5A 3LK3B 2K0LA 4GCQA 4O3WA 4AKRA 3GP6A 3K19A 4FZLA 2LHFA 4LSIA 4O3XB 4AZLA 3WI4A 4C00A 2R89A 4CTDA 3POXA 3KZIO 2XMXA 3SZVA 2X9KA 3AAAB 3SYBA 1BXWA 3HW9A 1QJ9A 2KZ7B 1HXTA 4UB6O 1GFMA 2KXPA 5B5EO 3VZWX 1GFNA 2Y2XA 2XE3A 3BRZA 3KVDD 3SZDA 4RLCA 4N75A 3LK42 4RJWA 3UAQA 4F4BA 2J4UP 2R4NA 2WJQA 3T20A 3POUA 3PF1A 3SY7A 3WU2O 4D5UA 1QJ8A 1E54A 3A0BO 3QRAA 4GCSA 5ADXK 3EMNX 2F1CX 1BH3A 3PRNA 5G39A 4N58A 5DL6A 2R4OA 4FUVA 1ZHXA 4KRAA 2MHLA 4LSHA 3UU2A 4C69X 3AAAA 3BRYA 4G76A 4FZNA 2X27X 5DL8A 1T1LA 4AYID 1HXUA 2KZ7A 3PORA 2IWVA 5E79O 1MM5A 3JCUO 4FQEA 1P4TA 3SYSA 3PGUA 5AFUL 2WVPA 4FSOA 1S5LO 2PRNA 2ODJA 5D5DA 4N74A 2R8AA 4XNKA 3DWNA 2KDYA 2ZFGA 3VY9X 4GCPA 3DWOX 1GFQA 2W81C 5PRNA 2YNKA 1PRNA 5GTIO 2XTQA 5FVNA 4JFBA 2F1VA 4O4XA 1BT9A 1MPFA 4O3ZA 1T16A 2W80C 3LK3A 2F1TA 3PQSA 5DL7A 1GFOA 4RLBA 3POQA 3AA1B 5G38A 4KR8A 4LSFA 2QTKA 3VZTX 1MM4A 2R4PA 4AFKA 3AAEB 2FGQX 3QRCA 2AXTO 1ZHYA 3AA7B 1Q9GA 2XG6A 2XTRA 3FYXA 1THQA 5T5FA 3WI5A 4FT6A 5IYUA 4GHBA 3C5OA 1YS5A 3DA3A 2J1NA 4K3BA 5G3AA 2OMFA 5B66O 5EE2A 3NJTA 1H6S1 1IZNB 3AA0B 4QQ1A 1OPFA 2R88A 4D64A 4FSPA 3PGSA 1GFPA 4FRXA 1HXXA 1PHOA 4O49A 2Y7SA 3HWBA 4UB8O 2FGRA 3O0EA 3PQUA 5KAFO 3T0SA 3JTYA 4RJXA 2Y0LA 4U9CA 4E1TA 2Y0HA 2M06A 4AYEC 3SY9A 3A0HO 4O4UA 3AAEA 5GV0A 5GTHO 3AA7A 2R4LA 2GE4A 2JMMA 7PRNA 4PUXA 5JDPA 4G75A 5G26A 2JQYA 2K4TA 5ADXL 2KC0A 2LFUA 3PGRA 4AYNA 3V8UA 3DZMA 4AYDC 6PRNA 1ZHWA 1ORMA 1IZNA 3AA0A 2WJRA 3HOEA 2PORA 3AA6B 8PRNA 5KAIO 5AFUK 1QJPA 3LK2B 4FRTA 2XE2A 4FOZA 2Y0KA 1Q9FA 2N2LA 4FZMA 3TZGA 3BS0A 4N59A 2ZLDA 4AUIA 4LSEA 4C4VB 3HOLA 4XNLA 1G90A 2ERVA 2XE5A 3G7GA 4JCHA 4O3YA 5H2FO 4FMSA 2M07A 2IWWA 4AKRB 3DA4A 4RL9A 3VZUX 4D65A 4AKMA 3AA1A 2YPVA 2XE1A 3VE1A 4GF4A 3RBHA
chains in the Genus database with same CATH topology
3A2SX 3AA6A 3VY8X 1ZHZA 3T24A 4B61A 4AYMC 3LK2A 2MNHA 3LK41 2KXPB 4FESA 4BUMX 4Z3TA 3UPGA 3NSGA 1ZHTA 3VE2A 1OSMA 2O4VA 4KR4A 2N2MA 4E1SA 5DL5A 3LK3B 2K0LA 4GCQA 4O3WA 4AKRA 3GP6A 3K19A 4FZLA 2LHFA 4LSIA 4O3XB 4AZLA 3POXA 3SZVA 3AAAB 3SYBA 1BXWA 3HW9A 1QJ9A 2KZ7B 1HXTA 1GFMA 2KXPA 3VZWX 1GFNA 2Y2XA 2XE3A 4F4BA 3KVDD 3SZDA 4RLCA 4RJWA 3LK42 3UAQA 2J4UP 3T20A 3POUA 3SY7A 4D5UA 1QJ8A 1E54A 3QRAA 4GCSA 5ADXK 3EMNX 3PRNA 1BH3A 4N58A 5DL6A 4FUVA 1ZHXA 4KRAA 2MHLA 4LSHA 3UU2A 4C69X 3AAAA 4G76A 4FZNA 2X27X 5DL8A 4AYID 1HXUA 2KZ7A 3PORA 2XE1A 1MM5A 1P4TA 3SYSA 5AFUL 4FSOA 2PRNA 2ODJA 5D5DA 4XNKA 2KDYA 2ZFGA 3VY9X 4GCPA 1GFQA 2W81C 5PRNA 2YNKA 1PRNA 2XTQA 5FVNA 4JFBA 2F1VA 4O4XA 1BT9A 1MPFA 4O3ZA 2W80C 3LK3A 2F1TA 3PQSA 5DL7A 1GFOA 4RLBA 3POQA 3AA1B 4KR8A 4LSFA 2QTKA 3VZTX 1MM4A 4AFKA 3AAEB 2FGQX 3QRCA 3WI4A 1ZHYA 3AA7B 1Q9GA 2XG6A 2XTRA 3FYXA 1THQA 5T5FA 3WI5A 4FT6A 5IYUA 4GHBA 3C5OA 1YS5A 3DA3A 2J1NA 2OMFA 5EE2A 1H6S1 1IZNB 3AA0B 4QQ1A 1OPFA 4D64A 4FSPA 1GFPA 4FRXA 1HXXA 1PHOA 4O49A 2Y7SA 3HWBA 8PRNA 2FGRA 3O0EA 3PQUA 3T0SA 3JTYA 4RJXA 2Y0LA 4U9CA 4E1TA 2Y0HA 2M06A 4AYEC 3SY9A 4O4UA 3AAEA 5GV0A 3AA7A 2GE4A 2JMMA 7PRNA 4PUXA 5JDPA 4G75A 5G26A 2K4TA 5ADXL 2KC0A 2LFUA 4AYNA 3V8UA 4AYDC 6PRNA 1ZHWA 1ORMA 1IZNA 3AA0A 3HOEA 2PORA 3AA6B 5AFUK 1QJPA 3LK2B 4FRTA 2XE2A 4FOZA 2Y0KA 1Q9FA 2N2LA 4FZMA 3TZGA 4N59A 4AUIA 2ZLDA 4LSEA 3HOLA 4XNLA 1G90A 2ERVA 2XE5A 3G7GA 4JCHA 4O3YA 4FMSA 2M07A 4AKRB 3DA4A 4RL9A 3VZUX 4D65A 4AKMA 3AA1A 2YPVA 2XMXA 3VE1A 4GF4A 3RBHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2S X;  3VY8 X;  3T24 A;  4BUM X;  3UPG A;  3NSG A;  1OSM A;  2O4V A;  4KR4 A;  5DL5 A;  4GCQ A;  3K19 A;  4LSI A;  3POX A;  3SZV A;  3SYB A;  3HW9 A;  1HXT A;  1GFM A;  3VZW X;  1GFN A;  2Y2X A;  2XE3 A;  3SZD A;  2J4U P;  4RJW A;  3T20 A;  3POU A;  3SY7 A;  4D5U A;  4GCS A;  1E54 A;  3EMN X;  3PRN A;  1BH3 A;  5DL6 A;  4KRA A;  4LSH A;  3UU2 A;  4C69 X;  5DL8 A;  1HXU A;  3POR A;  3SYS A;  4FSO A;  2ODJ A;  2PRN A;  3VY9 X;  2ZFG A;  4GCP A;  1GFQ A;  5PRN A;  1PRN A;  5FVN A;  4JFB A;  1BT9 A;  1MPF A;  5DL7 A;  1GFO A;  3POQ A;  4KR8 A;  4LSF A;  2QTK A;  3VZT X;  2FGQ X;  3WI4 A;  2XG6 A;  3FYX A;  3WI5 A;  4FT6 A;  2J1N A;  2OMF A;  1H6S 1;  4D64 A;  1OPF A;  4FSP A;  1GFP A;  4FRX A;  1HXX A;  1PHO A;  8PRN A;  3HWB A;  2FGR A;  3O0E A;  3T0S A;  3JTY A;  4RJX A;  2Y0L A;  2Y0H A;  3SY9 A;  7PRN A;  5JDP A;  2K4T A;  6PRN A;  2POR A;  4FRT A;  2XE2 A;  4FOZ A;  2Y0K A;  4AUI A;  2ZLD A;  4LSE A;  2XE5 A;  4FMS A;  3VZU X;  4D65 A;  2XE1 A; 
#chains in the Genus database with same CATH topology
 4IL6 O;  5TIS O;  3A2S X;  3AA6 A;  3VY8 X;  1ZHZ A;  3T24 A;  4B61 A;  4AYM C;  3LK2 A;  2MNH A;  3LK4 1;  2KXP B;  4FES A;  4BUM X;  4Z3T A;  3UPG A;  3NSG A;  1ZHT A;  4C4V A;  3VE2 A;  1OSM A;  2O4V A;  4KR4 A;  4PJ0 O;  2N2M A;  4E1S A;  4K3C A;  4PR7 A;  5DL5 A;  3LK3 B;  2K0L A;  4GCQ A;  4O3W A;  4AKR A;  3GP6 A;  3K19 A;  4FZL A;  2LHF A;  4LSI A;  4O3X B;  4AZL A;  3WI4 A;  4C00 A;  2R89 A;  4CTD A;  3POX A;  3KZI O;  2XMX A;  3SZV A;  2X9K A;  3AAA B;  3SYB A;  1BXW A;  3HW9 A;  1QJ9 A;  2KZ7 B;  1HXT A;  4UB6 O;  1GFM A;  2KXP A;  5B5E O;  3VZW X;  1GFN A;  2Y2X A;  2XE3 A;  3BRZ A;  3KVD D;  3SZD A;  4RLC A;  4N75 A;  3LK4 2;  4RJW A;  3UAQ A;  4F4B A;  2J4U P;  2R4N A;  2WJQ A;  3T20 A;  3POU A;  3PF1 A;  3SY7 A;  3WU2 O;  4D5U A;  1QJ8 A;  1E54 A;  3A0B O;  3QRA A;  4GCS A;  5ADX K;  3EMN X;  2F1C X;  1BH3 A;  3PRN A;  5G39 A;  4N58 A;  5DL6 A;  2R4O A;  4FUV A;  1ZHX A;  4KRA A;  2MHL A;  4LSH A;  3UU2 A;  4C69 X;  3AAA A;  3BRY A;  4G76 A;  4FZN A;  2X27 X;  5DL8 A;  1T1L A;  4AYI D;  1HXU A;  2KZ7 A;  3POR A;  2IWV A;  5E79 O;  1MM5 A;  3JCU O;  4FQE A;  1P4T A;  3SYS A;  3PGU A;  5AFU L;  2WVP A;  4FSO A;  1S5L O;  2PRN A;  2ODJ A;  5D5D A;  4N74 A;  2R8A A;  4XNK A;  3DWN A;  2KDY A;  2ZFG A;  3VY9 X;  4GCP A;  3DWO X;  1GFQ A;  2W81 C;  5PRN A;  2YNK A;  1PRN A;  5GTI O;  2XTQ A;  5FVN A;  4JFB A;  2F1V A;  4O4X A;  1BT9 A;  1MPF A;  4O3Z A;  1T16 A;  2W80 C;  3LK3 A;  2F1T A;  3PQS A;  5DL7 A;  1GFO A;  4RLB A;  3POQ A;  3AA1 B;  5G38 A;  4KR8 A;  4LSF A;  2QTK A;  3VZT X;  1MM4 A;  2R4P A;  4AFK A;  3AAE B;  2FGQ X;  3QRC A;  2AXT O;  1ZHY A;  3AA7 B;  1Q9G A;  2XG6 A;  2XTR A;  3FYX A;  1THQ A;  5T5F A;  3WI5 A;  4FT6 A;  5IYU A;  4GHB A;  3C5O A;  1YS5 A;  3DA3 A;  2J1N A;  4K3B A;  5G3A A;  2OMF A;  5B66 O;  5EE2 A;  3NJT A;  1H6S 1;  1IZN B;  3AA0 B;  4QQ1 A;  1OPF A;  2R88 A;  4D64 A;  4FSP A;  3PGS A;  1GFP A;  4FRX A;  1HXX A;  1PHO A;  4O49 A;  2Y7S A;  3HWB A;  4UB8 O;  2FGR A;  3O0E A;  3PQU A;  5KAF O;  3T0S A;  3JTY A;  4RJX A;  2Y0L A;  4U9C A;  4E1T A;  2Y0H A;  2M06 A;  4AYE C;  3SY9 A;  3A0H O;  4O4U A;  3AAE A;  5GV0 A;  5GTH O;  3AA7 A;  2R4L A;  2GE4 A;  2JMM A;  7PRN A;  4PUX A;  5JDP A;  4G75 A;  5G26 A;  2JQY A;  2K4T A;  5ADX L;  2KC0 A;  2LFU A;  3PGR A;  4AYN A;  3V8U A;  3DZM A;  4AYD C;  6PRN A;  1ZHW A;  1ORM A;  1IZN A;  3AA0 A;  2WJR A;  3HOE A;  2POR A;  3AA6 B;  8PRN A;  5KAI O;  5AFU K;  1QJP A;  3LK2 B;  4FRT A;  2XE2 A;  4FOZ A;  2Y0K A;  1Q9F A;  2N2L A;  4FZM A;  3TZG A;  3BS0 A;  4N59 A;  2ZLD A;  4AUI A;  4LSE A;  4C4V B;  3HOL A;  4XNL A;  1G90 A;  2ERV A;  2XE5 A;  3G7G A;  4JCH A;  4O3Y A;  5H2F O;  4FMS A;  2M07 A;  2IWW A;  4AKR B;  3DA4 A;  4RL9 A;  3VZU X;  4D65 A;  4AKM A;  3AA1 A;  2YPV A;  2XE1 A;  3VE1 A;  4GF4 A;  3RBH A; 
#chains in the Genus database with same CATH homology
 3A2S X;  3AA6 A;  3VY8 X;  1ZHZ A;  3T24 A;  4B61 A;  4AYM C;  3LK2 A;  2MNH A;  3LK4 1;  2KXP B;  4FES A;  4BUM X;  4Z3T A;  3UPG A;  3NSG A;  1ZHT A;  3VE2 A;  1OSM A;  2O4V A;  4KR4 A;  2N2M A;  4E1S A;  5DL5 A;  3LK3 B;  2K0L A;  4GCQ A;  4O3W A;  4AKR A;  3GP6 A;  3K19 A;  4FZL A;  2LHF A;  4LSI A;  4O3X B;  4AZL A;  3POX A;  3SZV A;  3AAA B;  3SYB A;  1BXW A;  3HW9 A;  1QJ9 A;  2KZ7 B;  1HXT A;  1GFM A;  2KXP A;  3VZW X;  1GFN A;  2Y2X A;  2XE3 A;  4F4B A;  3KVD D;  3SZD A;  4RLC A;  4RJW A;  3LK4 2;  3UAQ A;  2J4U P;  3T20 A;  3POU A;  3SY7 A;  4D5U A;  1QJ8 A;  1E54 A;  3QRA A;  4GCS A;  5ADX K;  3EMN X;  3PRN A;  1BH3 A;  4N58 A;  5DL6 A;  4FUV A;  1ZHX A;  4KRA A;  2MHL A;  4LSH A;  3UU2 A;  4C69 X;  3AAA A;  4G76 A;  4FZN A;  2X27 X;  5DL8 A;  4AYI D;  1HXU A;  2KZ7 A;  3POR A;  2XE1 A;  1MM5 A;  1P4T A;  3SYS A;  5AFU L;  4FSO A;  2PRN A;  2ODJ A;  5D5D A;  4XNK A;  2KDY A;  2ZFG A;  3VY9 X;  4GCP A;  1GFQ A;  2W81 C;  5PRN A;  2YNK A;  1PRN A;  2XTQ A;  5FVN A;  4JFB A;  2F1V A;  4O4X A;  1BT9 A;  1MPF A;  4O3Z A;  2W80 C;  3LK3 A;  2F1T A;  3PQS A;  5DL7 A;  1GFO A;  4RLB A;  3POQ A;  3AA1 B;  4KR8 A;  4LSF A;  2QTK A;  3VZT X;  1MM4 A;  4AFK A;  3AAE B;  2FGQ X;  3QRC A;  3WI4 A;  1ZHY A;  3AA7 B;  1Q9G A;  2XG6 A;  2XTR A;  3FYX A;  1THQ A;  5T5F A;  3WI5 A;  4FT6 A;  5IYU A;  4GHB A;  3C5O A;  1YS5 A;  3DA3 A;  2J1N A;  2OMF A;  5EE2 A;  1H6S 1;  1IZN B;  3AA0 B;  4QQ1 A;  1OPF A;  4D64 A;  4FSP A;  1GFP A;  4FRX A;  1HXX A;  1PHO A;  4O49 A;  2Y7S A;  3HWB A;  8PRN A;  2FGR A;  3O0E A;  3PQU A;  3T0S A;  3JTY A;  4RJX A;  2Y0L A;  4U9C A;  4E1T A;  2Y0H A;  2M06 A;  4AYE C;  3SY9 A;  4O4U A;  3AAE A;  5GV0 A;  3AA7 A;  2GE4 A;  2JMM A;  7PRN A;  4PUX A;  5JDP A;  4G75 A;  5G26 A;  2K4T A;  5ADX L;  2KC0 A;  2LFU A;  4AYN A;  3V8U A;  4AYD C;  6PRN A;  1ZHW A;  1ORM A;  1IZN A;  3AA0 A;  3HOE A;  2POR A;  3AA6 B;  5AFU K;  1QJP A;  3LK2 B;  4FRT A;  2XE2 A;  4FOZ A;  2Y0K A;  1Q9F A;  2N2L A;  4FZM A;  3TZG A;  4N59 A;  4AUI A;  2ZLD A;  4LSE A;  3HOL A;  4XNL A;  1G90 A;  2ERV A;  2XE5 A;  3G7G A;  4JCH A;  4O3Y A;  4FMS A;  2M07 A;  4AKR B;  3DA4 A;  4RL9 A;  3VZU X;  4D65 A;  4AKM A;  3AA1 A;  2YPV A;  2XMX A;  3VE1 A;  4GF4 A;  3RBH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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