4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
1PHOA 3HW9A 4FOZA 1GFQA 1GFMA 2XE2A 4FRTA 3VY8X 1PRNA 1BH3A 3NSGA 7PRNA 2FGRA 2Y0LA 3PORA 1OPFA 3T20A 3VZWX 4FSPA 8PRNA 4AUIA 4D65A 3T24A 2XG6A 2Y2XA 3SYSA 3T0SA 2PRNA 5FVNA 4KR4A 1E54A 4LSFA 4JFBA 5DL6A 3SYBA 4D64A 5DL8A 3POQA 2ODJA 4GCQA 5DL7A 3SY7A 2J1NA 2XE5A 4FRXA 5DL5A 3K19A 5JDPA 2XE1A 2Y0HA 1H6S1 3O0EA 4LSEA 3POUA 4FMSA 3VZTX 2ZFGA 4D5UA 1MPFA 3UPGA 4C69X 3POXA 2J4UP 4GCPA 2OMFA 2K4TA 3A2SX 1GFPA 3VZUX 1GFOA 1HXTA 2XE3A 1HXUA 4BUMX 4LSIA 1BT9A 2O4VA 6PRNA 1HXXA 3JTYA 4KR8A 4GCSA 4KRAA 3WI4A 1GFNA 3VY9X 3WI5A 2ZLDA 4FSOA 2FGQX 3EMNX 4RJWA 3SY9A 4LSHA 4RJXA 3FYXA 3SZVA 2QTKA 2Y0KA 3HWBA 3UU2A 1OSMA 2PORA 4FT6A 3SZDA 5PRNA 3PRNA
chains in the Genus database with same CATH superfamily
3AA6A 4O4XA 2AXTO 1ZHXA 2XMXA 3C5OA 4FZNA 2JMMA 5TISO 1PHOA 3GP6A 4Z3TA 3DZMA 1T1LA 2R4NA 1T16A 3QRCA 4N75A 2KC0A 3VE1A 3HW9A 4C00A 5GTHO 4N58A 5E79O 4FOZA 3VE2A 1GFQA 1GFMA 2R89A 2XE2A 3LK3B 4AYEC 3LK3A 5ADXL 4FRTA 2XTQA 3VY8X 4AKRB 2F1TA 1PRNA 1QJ9A 5AFUK 1BH3A 1QJ8A 1MM5A 2MHLA 4U9CA 3PF1A 1P4TA 3NSGA 4IL6O 2FGRA 2GE4A 2Y0LA 3PGRA 2ERVA 1OPFA 3PORA 4RLCA 4XNKA 3T20A 1G90A 4RLBA 4UB6O 4G75A 2R4PA 1IZNA 3VZWX 1QJPA 4FSPA 8PRNA 4AUIA 4N74A 4QQ1A 3NJTA 5GTIO 1Q9GA 4D65A 3T24A 2XG6A 2Y2XA 4AFKA 3AA7B 4AYDC 2KZ7B 2X27X 3SYSA 3T0SA 5B66O 2PRNA 3KZIO 5FVNA 2LFUA 4KR4A 3AA1B 1E54A 3G7GA 1BXWA 3DWNA 4JFBA 4LSFA 5DL6A 2KDYA 3SYBA 4D64A 5B5EO 3BS0A 5DL8A 4AKRA 5H2FO 3POQA 1MM4A 2ODJA 1ZHTA 4JCHA 4PJ0O 1S5LO 2YPVA 4GCQA 4PUXA 2LHFA 5DL7A 4AZLA 2W81C 3SY7A 3PQUA 2J1NA 2XE5A 3V8UA 2N2MA 3PGUA 4E1SA 2F1VA 4FRXA 3JCUO 5DL5A 3K19A 2W80C 4AYNA 5JDPA 2XE1A 2Y0HA 2M06A 2N2LA 1H6S1 3O0EA 4LSEA 4RL9A 3POUA 3AAAB 4AYID 1ZHZA 4FMSA 3AAAA 3VZTX 2MNHA 2ZFGA 4D5UA 5G3AA 1MPFA 3LK42 3UPGA 4C69X 3AA7A 3POXA 2XTRA 2KZ7A 4GCPA 2OMFA 2J4UP 2K4TA 5AFUL 4N59A 3A2SX 5T5FA 1GFPA 3DA4A 3AA1A 1Q9FA 2K0LA 3HOLA 3LK41 2JQYA 5KAIO 3VZUX 4C4VB 2WJQA 4K3CA 4CTDA 4FQEA 1GFOA 1HXTA 4AKMA 2F1CX 2XE3A 6PRNA 2R4LA 2Y7SA 1HXUA 3HOEA 4O4UA 3AA0B 4PR7A 4B61A 4BUMX 3UAQA 3AA0A 4LSIA 1ZHYA 1BT9A 2O4VA 3DA3A 5D5DA 1HXXA 3JTYA 4O3XB 3AA6B 3RBHA 2M07A 1ZHWA 4GCSA 4KR8A 3KVDD 4KRAA 2X9KA 7PRNA 2IWWA 3DWOX 3QRAA 3WI4A 1THQA 4FUVA 1GFNA 3VY9X 3WI5A 2ZLDA 5IYUA 2R88A 2FGQX 4FSOA 5KAFO 3EMNX 4RJWA 4UB8O 4K3BA 4E1TA 4F4BA 2WVPA 2WJRA 4O3ZA 3BRYA 3SY9A 1YS5A 3PGSA 4AYMC 3LK2B 3LK2A 2IWVA 4GHBA 4FZMA 4LSHA 3AAEB 3FYXA 4FESA 4RJXA 3SZVA 3AAEA 2QTKA 2Y0KA 4XNLA 3HWBA 4FZLA 3TZGA 2R8AA 4C4VA 5G26A 5G39A 2R4OA 4O3WA 3A0BO 5ADXK 2YNKA 4G76A 4O49A 5EE2A 4O3YA 1OSMA 5G38A 3UU2A 2PORA 1IZNB 3PQSA 2KXPB 4FT6A 3SZDA 1ORMA 3WU2O 2KXPA 3BRZA 3A0HO 5GV0A 5PRNA 3PRNA 4GF4A
chains in the Genus database with same CATH topology
3AA6A 4O4XA 1ZHXA 2XMXA 3C5OA 4FZNA 2JMMA 1PHOA 3GP6A 4Z3TA 3QRCA 2KC0A 3VE1A 3HW9A 4N58A 4FOZA 3VE2A 1GFQA 1GFMA 2XE2A 3LK3B 4AYEC 3LK3A 5ADXL 4FRTA 2XTQA 3VY8X 4AKRB 2F1TA 1PRNA 1QJ9A 5AFUK 1BH3A 1QJ8A 1MM5A 2MHLA 4U9CA 3V8UA 1P4TA 3NSGA 7PRNA 2FGRA 2GE4A 2Y0LA 4RLCA 2ERVA 1OPFA 3PORA 4XNKA 3T20A 1G90A 4RLBA 4G75A 1IZNA 3VZWX 1QJPA 4FSPA 8PRNA 4AUIA 4QQ1A 1Q9GA 4D65A 3T24A 2XG6A 2Y2XA 4AFKA 3AA7B 4AYDC 2KZ7B 2X27X 3SYSA 3T0SA 2PRNA 5FVNA 2LFUA 4KR4A 3AA1B 1E54A 3G7GA 1BXWA 4JFBA 4LSFA 5DL6A 3SYBA 2KDYA 4D64A 5DL8A 4AKRA 3POQA 1MM4A 2ODJA 1ZHTA 4JCHA 2YPVA 4GCQA 4PUXA 2LHFA 5DL7A 4AZLA 2W81C 3SY7A 3PQUA 2J1NA 2XE5A 2N2MA 2F1VA 4FRXA 5DL5A 3K19A 2W80C 4AYNA 5JDPA 2XE1A 2Y0HA 2M06A 2N2LA 1H6S1 3O0EA 4LSEA 4RL9A 3POUA 3AAAB 4AYID 1ZHZA 4FMSA 3AAAA 3VZTX 2MNHA 2ZFGA 4D5UA 1MPFA 3LK42 3UPGA 4C69X 3AA7A 3POXA 2XTRA 2KZ7A 4GCPA 2OMFA 2J4UP 2K4TA 5AFUL 4N59A 3A2SX 5T5FA 1GFPA 3DA4A 3AA1A 1Q9FA 2K0LA 3HOLA 3LK41 3VZUX 6PRNA 1GFOA 1HXTA 4AKMA 2XE3A 2Y7SA 3HOEA 1HXUA 4O4UA 4B61A 3AA0B 4BUMX 3UAQA 3AA0A 4LSIA 1ZHYA 1BT9A 2O4VA 3DA3A 5D5DA 1HXXA 3JTYA 4O3XB 3AA6B 3RBHA 2M07A 1ZHWA 4GCSA 4KR8A 3KVDD 4KRAA 3QRAA 3WI4A 1THQA 4FUVA 1GFNA 3VY9X 3WI5A 2ZLDA 5IYUA 4FSOA 2FGQX 3EMNX 4RJWA 4E1TA 4F4BA 4O3ZA 3SY9A 1YS5A 4AYMC 3LK2B 3LK2A 4GHBA 4FZMA 4LSHA 3AAEB 3FYXA 4FESA 4RJXA 3SZVA 3AAEA 2QTKA 2Y0KA 4XNLA 3HWBA 4FZLA 3TZGA 4E1SA 5G26A 4O3WA 5ADXK 2YNKA 4G76A 4O49A 5EE2A 4O3YA 1OSMA 3UU2A 2PORA 1IZNB 3PQSA 2KXPB 4FT6A 3SZDA 1ORMA 5GV0A 2KXPA 5PRNA 3PRNA 4GF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PHO A;  3HW9 A;  4FOZ A;  1GFQ A;  1GFM A;  2XE2 A;  4FRT A;  3VY8 X;  1PRN A;  1BH3 A;  3NSG A;  7PRN A;  2FGR A;  2Y0L A;  3POR A;  1OPF A;  3T20 A;  3VZW X;  4FSP A;  8PRN A;  4AUI A;  4D65 A;  3T24 A;  2XG6 A;  2Y2X A;  3SYS A;  3T0S A;  2PRN A;  5FVN A;  4KR4 A;  1E54 A;  4LSF A;  4JFB A;  5DL6 A;  3SYB A;  4D64 A;  5DL8 A;  3POQ A;  2ODJ A;  4GCQ A;  5DL7 A;  3SY7 A;  2J1N A;  2XE5 A;  4FRX A;  5DL5 A;  3K19 A;  5JDP A;  2XE1 A;  2Y0H A;  1H6S 1;  3O0E A;  4LSE A;  3POU A;  4FMS A;  3VZT X;  2ZFG A;  4D5U A;  1MPF A;  3UPG A;  4C69 X;  3POX A;  2J4U P;  4GCP A;  2OMF A;  2K4T A;  3A2S X;  1GFP A;  3VZU X;  1GFO A;  1HXT A;  2XE3 A;  1HXU A;  4BUM X;  4LSI A;  1BT9 A;  2O4V A;  6PRN A;  1HXX A;  3JTY A;  4KR8 A;  4GCS A;  4KRA A;  3WI4 A;  1GFN A;  3VY9 X;  3WI5 A;  2ZLD A;  4FSO A;  2FGQ X;  3EMN X;  4RJW A;  3SY9 A;  4LSH A;  4RJX A;  3FYX A;  3SZV A;  2QTK A;  2Y0K A;  3HWB A;  3UU2 A;  1OSM A;  2POR A;  4FT6 A;  3SZD A;  5PRN A;  3PRN A; 
#chains in the Genus database with same CATH topology
 3AA6 A;  4O4X A;  2AXT O;  1ZHX A;  2XMX A;  3C5O A;  4FZN A;  2JMM A;  5TIS O;  1PHO A;  3GP6 A;  4Z3T A;  3DZM A;  1T1L A;  2R4N A;  1T16 A;  3QRC A;  4N75 A;  2KC0 A;  3VE1 A;  3HW9 A;  4C00 A;  5GTH O;  4N58 A;  5E79 O;  4FOZ A;  3VE2 A;  1GFQ A;  1GFM A;  2R89 A;  2XE2 A;  3LK3 B;  4AYE C;  3LK3 A;  5ADX L;  4FRT A;  2XTQ A;  3VY8 X;  4AKR B;  2F1T A;  1PRN A;  1QJ9 A;  5AFU K;  1BH3 A;  1QJ8 A;  1MM5 A;  2MHL A;  4U9C A;  3PF1 A;  1P4T A;  3NSG A;  4IL6 O;  2FGR A;  2GE4 A;  2Y0L A;  3PGR A;  2ERV A;  1OPF A;  3POR A;  4RLC A;  4XNK A;  3T20 A;  1G90 A;  4RLB A;  4UB6 O;  4G75 A;  2R4P A;  1IZN A;  3VZW X;  1QJP A;  4FSP A;  8PRN A;  4AUI A;  4N74 A;  4QQ1 A;  3NJT A;  5GTI O;  1Q9G A;  4D65 A;  3T24 A;  2XG6 A;  2Y2X A;  4AFK A;  3AA7 B;  4AYD C;  2KZ7 B;  2X27 X;  3SYS A;  3T0S A;  5B66 O;  2PRN A;  3KZI O;  5FVN A;  2LFU A;  4KR4 A;  3AA1 B;  1E54 A;  3G7G A;  1BXW A;  3DWN A;  4JFB A;  4LSF A;  5DL6 A;  2KDY A;  3SYB A;  4D64 A;  5B5E O;  3BS0 A;  5DL8 A;  4AKR A;  5H2F O;  3POQ A;  1MM4 A;  2ODJ A;  1ZHT A;  4JCH A;  4PJ0 O;  1S5L O;  2YPV A;  4GCQ A;  4PUX A;  2LHF A;  5DL7 A;  4AZL A;  2W81 C;  3SY7 A;  3PQU A;  2J1N A;  2XE5 A;  3V8U A;  2N2M A;  3PGU A;  4E1S A;  2F1V A;  4FRX A;  3JCU O;  5DL5 A;  3K19 A;  2W80 C;  4AYN A;  5JDP A;  2XE1 A;  2Y0H A;  2M06 A;  2N2L A;  1H6S 1;  3O0E A;  4LSE A;  4RL9 A;  3POU A;  3AAA B;  4AYI D;  1ZHZ A;  4FMS A;  3AAA A;  3VZT X;  2MNH A;  2ZFG A;  4D5U A;  5G3A A;  1MPF A;  3LK4 2;  3UPG A;  4C69 X;  3AA7 A;  3POX A;  2XTR A;  2KZ7 A;  4GCP A;  2OMF A;  2J4U P;  2K4T A;  5AFU L;  4N59 A;  3A2S X;  5T5F A;  1GFP A;  3DA4 A;  3AA1 A;  1Q9F A;  2K0L A;  3HOL A;  3LK4 1;  2JQY A;  5KAI O;  3VZU X;  4C4V B;  2WJQ A;  4K3C A;  4CTD A;  4FQE A;  1GFO A;  1HXT A;  4AKM A;  2F1C X;  2XE3 A;  6PRN A;  2R4L A;  2Y7S A;  1HXU A;  3HOE A;  4O4U A;  3AA0 B;  4PR7 A;  4B61 A;  4BUM X;  3UAQ A;  3AA0 A;  4LSI A;  1ZHY A;  1BT9 A;  2O4V A;  3DA3 A;  5D5D A;  1HXX A;  3JTY A;  4O3X B;  3AA6 B;  3RBH A;  2M07 A;  1ZHW A;  4GCS A;  4KR8 A;  3KVD D;  4KRA A;  2X9K A;  7PRN A;  2IWW A;  3DWO X;  3QRA A;  3WI4 A;  1THQ A;  4FUV A;  1GFN A;  3VY9 X;  3WI5 A;  2ZLD A;  5IYU A;  2R88 A;  2FGQ X;  4FSO A;  5KAF O;  3EMN X;  4RJW A;  4UB8 O;  4K3B A;  4E1T A;  4F4B A;  2WVP A;  2WJR A;  4O3Z A;  3BRY A;  3SY9 A;  1YS5 A;  3PGS A;  4AYM C;  3LK2 B;  3LK2 A;  2IWV A;  4GHB A;  4FZM A;  4LSH A;  3AAE B;  3FYX A;  4FES A;  4RJX A;  3SZV A;  3AAE A;  2QTK A;  2Y0K A;  4XNL A;  3HWB A;  4FZL A;  3TZG A;  2R8A A;  4C4V A;  5G26 A;  5G39 A;  2R4O A;  4O3W A;  3A0B O;  5ADX K;  2YNK A;  4G76 A;  4O49 A;  5EE2 A;  4O3Y A;  1OSM A;  5G38 A;  3UU2 A;  2POR A;  1IZN B;  3PQS A;  2KXP B;  4FT6 A;  3SZD A;  1ORM A;  3WU2 O;  2KXP A;  3BRZ A;  3A0H O;  5GV0 A;  5PRN A;  3PRN A;  4GF4 A; 
#chains in the Genus database with same CATH homology
 3AA6 A;  4O4X A;  1ZHX A;  2XMX A;  3C5O A;  4FZN A;  2JMM A;  1PHO A;  3GP6 A;  4Z3T A;  3QRC A;  2KC0 A;  3VE1 A;  3HW9 A;  4N58 A;  4FOZ A;  3VE2 A;  1GFQ A;  1GFM A;  2XE2 A;  3LK3 B;  4AYE C;  3LK3 A;  5ADX L;  4FRT A;  2XTQ A;  3VY8 X;  4AKR B;  2F1T A;  1PRN A;  1QJ9 A;  5AFU K;  1BH3 A;  1QJ8 A;  1MM5 A;  2MHL A;  4U9C A;  3V8U A;  1P4T A;  3NSG A;  7PRN A;  2FGR A;  2GE4 A;  2Y0L A;  4RLC A;  2ERV A;  1OPF A;  3POR A;  4XNK A;  3T20 A;  1G90 A;  4RLB A;  4G75 A;  1IZN A;  3VZW X;  1QJP A;  4FSP A;  8PRN A;  4AUI A;  4QQ1 A;  1Q9G A;  4D65 A;  3T24 A;  2XG6 A;  2Y2X A;  4AFK A;  3AA7 B;  4AYD C;  2KZ7 B;  2X27 X;  3SYS A;  3T0S A;  2PRN A;  5FVN A;  2LFU A;  4KR4 A;  3AA1 B;  1E54 A;  3G7G A;  1BXW A;  4JFB A;  4LSF A;  5DL6 A;  3SYB A;  2KDY A;  4D64 A;  5DL8 A;  4AKR A;  3POQ A;  1MM4 A;  2ODJ A;  1ZHT A;  4JCH A;  2YPV A;  4GCQ A;  4PUX A;  2LHF A;  5DL7 A;  4AZL A;  2W81 C;  3SY7 A;  3PQU A;  2J1N A;  2XE5 A;  2N2M A;  2F1V A;  4FRX A;  5DL5 A;  3K19 A;  2W80 C;  4AYN A;  5JDP A;  2XE1 A;  2Y0H A;  2M06 A;  2N2L A;  1H6S 1;  3O0E A;  4LSE A;  4RL9 A;  3POU A;  3AAA B;  4AYI D;  1ZHZ A;  4FMS A;  3AAA A;  3VZT X;  2MNH A;  2ZFG A;  4D5U A;  1MPF A;  3LK4 2;  3UPG A;  4C69 X;  3AA7 A;  3POX A;  2XTR A;  2KZ7 A;  4GCP A;  2OMF A;  2J4U P;  2K4T A;  5AFU L;  4N59 A;  3A2S X;  5T5F A;  1GFP A;  3DA4 A;  3AA1 A;  1Q9F A;  2K0L A;  3HOL A;  3LK4 1;  3VZU X;  6PRN A;  1GFO A;  1HXT A;  4AKM A;  2XE3 A;  2Y7S A;  3HOE A;  1HXU A;  4O4U A;  4B61 A;  3AA0 B;  4BUM X;  3UAQ A;  3AA0 A;  4LSI A;  1ZHY A;  1BT9 A;  2O4V A;  3DA3 A;  5D5D A;  1HXX A;  3JTY A;  4O3X B;  3AA6 B;  3RBH A;  2M07 A;  1ZHW A;  4GCS A;  4KR8 A;  3KVD D;  4KRA A;  3QRA A;  3WI4 A;  1THQ A;  4FUV A;  1GFN A;  3VY9 X;  3WI5 A;  2ZLD A;  5IYU A;  4FSO A;  2FGQ X;  3EMN X;  4RJW A;  4E1T A;  4F4B A;  4O3Z A;  3SY9 A;  1YS5 A;  4AYM C;  3LK2 B;  3LK2 A;  4GHB A;  4FZM A;  4LSH A;  3AAE B;  3FYX A;  4FES A;  4RJX A;  3SZV A;  3AAE A;  2QTK A;  2Y0K A;  4XNL A;  3HWB A;  4FZL A;  3TZG A;  4E1S A;  5G26 A;  4O3W A;  5ADX K;  2YNK A;  4G76 A;  4O49 A;  5EE2 A;  4O3Y A;  1OSM A;  3UU2 A;  2POR A;  1IZN B;  3PQS A;  2KXP B;  4FT6 A;  3SZD A;  1ORM A;  5GV0 A;  2KXP A;  5PRN A;  3PRN A;  4GF4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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