4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
b'MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transport protein
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
4LSIA 3K19A 2PORA 2FGRA 4FT6A 2XG6A 2Y0LA 1GFPA 2XE3A 4LSFA 4FSOA 3T24A 3POUA 4LSHA 1GFOA 5DL7A 4KR8A 4FSPA 3POXA 3SZVA 2XE2A 3T0SA 1OPFA 2QTKA 4LSEA 4GCQA 4RJWA 5DL6A 1HXTA 1GFQA 2ZFGA 1HXUA 1GFMA 4BUMX 2Y0HA 2J1NA 2OMFA 3O0EA 3T20A 3VZWX 1BH3A 5PRNA 4AUIA 2ZLDA 1HXXA 1H6S1 3SYBA 4GCPA 3HWBA 3UPGA 3VY8X 8PRNA 2J4UP 3NSGA 3JTYA 4D65A 1BT9A 3UU2A 3PRNA 5DL8A 4RJXA 4FOZA 3VZTX 5DL5A 3POQA 3VZUX 4GCSA 5FVNA 4KR4A 1PHOA 3WI5A 4FRXA 2FGQX 2XE1A 3SYSA 2K4TA 3FYXA 4D5UA 2O4VA 3VY9X 3SY9A 3EMNX 4KRAA 3SY7A 4JFBA 5JDPA 4FMSA 3SZDA 2XE5A 2Y0KA 3PORA 4D64A 4FRTA 1MPFA 7PRNA 1PRNA 3A2SX 3HW9A 1GFNA 2Y2XA 6PRNA 1E54A 4C69X 2PRNA 1OSMA 2ODJA 3WI4A
chains in the Genus database with same CATH superfamily
1QJPA 4LSIA 4CTDA 1ZHTA 3JCUO 3C5OA 4O4UA 2X27X 2XMXA 4UB8O 3LK42 1ZHZA 3K19A 2PORA 2FGRA 4FT6A 3G7GA 3LK3A 5D5DA 2LFUA 2WJQA 2XG6A 2Y0LA 1GFPA 4N58A 4QQ1A 4XNLA 4AFKA 2XE3A 4AYDC 2X9KA 4FSOA 1T16A 4LSFA 3T24A 6PRNA 4E1TA 5KAFO 3TZGA 3POUA 3QRCA 4LSHA 1GFOA 1ZHWA 4KR8A 4K3CA 5DL7A 4FSPA 5B5EO 2W81C 3AA6B 5TISO 3POXA 3AA1A 1QJ9A 3LK2B 1BXWA 1IZNA 3PF1A 3SZVA 2XE2A 3T0SA 3DZMA 4AKMA 3KVDD 5G39A 5ADXL 2R88A 5T5FA 2N2MA 4AZLA 4C4VA 3WU2O 3KZIO 2MHLA 4FZNA 2KDYA 2F1VA 1OPFA 2QTKA 4LSEA 1P4TA 1T1LA 4GCQA 2R89A 4RJWA 3AA7B 3UAQA 5DL6A 4G75A 1G90A 1HXTA 5GTIO 3A0BO 4B61A 4O3YA 1GFQA 2ZFGA 3QRAA 2R4LA 4IL6O 4O3WA 1ZHYA 1HXUA 2JMMA 2R8AA 1GFMA 2YNKA 2R4OA 2Y0HA 3AAAB 4BUMX 3HOEA 4G76A 3LK2A 4FZLA 2J1NA 3RBHA 4FZMA 2OMFA 3AA0B 4RLBA 2F1TA 3O0EA 5G3AA 1THQA 2WJRA 4O49A 2KZ7A 3T20A 3PGSA 3VZWX 4AYNA 4UB6O 2YPVA 5AFUK 1BH3A 2M06A 2AXTO 2XTQA 5PRNA 3VE2A 4AUIA 2MNHA 2ZLDA 1HXXA 5B66O 3DWOX 3AA7A 2IWWA 4FUVA 1H6S1 2ERVA 4O4XA 4GCPA 3GP6A 3HWBA 4PJ0O 4PUXA 3SYBA 4O3XB 4C00A 4GF4A 5H2FO 3PGUA 3UPGA 1YS5A 3VY8X 8PRNA 3NSGA 3JTYA 4D65A 5ADXK 4AKRB 5GTHO 1BT9A 3AAAA 3UU2A 3PRNA 5DL8A 4N59A 3PQSA 2IWVA 1S5LO 2JQYA 4FOZA 4RJXA 3AA0A 3POQA 4GHBA 2LHFA 4RL9A 5DL5A 3AA6A 3VZUX 1Q9FA 2KXPB 4GCSA 4K3BA 4KR4A 1PHOA 5FVNA 3WI5A 4FESA 4FQEA 4FRXA 4AYID 2FGQX 2XE1A 2F1CX 3BS0A 3SYSA 3VE1A 2R4PA 1MM4A 2Y7SA 3HOLA 1IZNB 2K4TA 3FYXA 4D5UA 3LK41 4O3ZA 3AAEB 2XTRA 5E79O 1ZHXA 2O4VA 5EE2A 5GV0A 4F4BA 2WVPA 3V8UA 3SY9A 3DA3A 2R4NA 3EMNX 4KRAA 4U9CA 3SY7A 3VY9X 4JFBA 4E1SA 5JDPA 4FMSA 4C4VB 4AYEC 4N75A 5G38A 4JCHA 3SZDA 2XE5A 2Y0KA 5G26A 1ORMA 3A0HO 3PORA 4D64A 4AYMC 4AKRA 4N74A 3LK3B 4XNKA 4FRTA 1MPFA 7PRNA 5AFUL 3DWNA 5IYUA 3BRYA 1QJ8A 1PRNA 2N2LA 2KXPA 4Z3TA 2W80C 3A2SX 4RLCA 3BRZA 3PQUA 1MM5A 2KC0A 3HW9A 1GFNA 1Q9GA 3PGRA 5KAIO 2K0LA 2Y2XA 3AAEA 3VZTX 2J4UP 2M07A 1E54A 4PR7A 3AA1B 3DA4A 2PRNA 4C69X 1OSMA 2KZ7B 2ODJA 3NJTA 3WI4A 2GE4A
chains in the Genus database with same CATH topology
1QJPA 4LSIA 1ZHTA 3C5OA 4O4UA 2X27X 2XMXA 3LK42 1ZHZA 3K19A 2PORA 2FGRA 4FT6A 3G7GA 3LK3A 5D5DA 2LFUA 2XG6A 2Y0LA 1GFPA 4N58A 4QQ1A 4XNLA 4AFKA 2XE3A 4AYDC 4LSFA 4FSOA 3T24A 4E1TA 3TZGA 3POUA 3QRCA 4LSHA 1GFOA 1ZHWA 4KR8A 5DL7A 4FSPA 2W81C 3AA6B 3POXA 3AA1A 1QJ9A 3LK2B 1BXWA 1IZNA 3SZVA 2XE2A 3T0SA 4AKMA 3KVDD 5ADXL 5T5FA 2N2MA 4AZLA 2MHLA 4FZNA 2KDYA 2F1VA 1OPFA 2QTKA 4LSEA 1P4TA 4GCQA 4RJWA 3AA7B 3UAQA 5DL6A 4G75A 1G90A 1HXTA 4B61A 4O3YA 1GFQA 2ZFGA 3QRAA 4O3WA 1ZHYA 1HXUA 2JMMA 2YNKA 1GFMA 4BUMX 2Y0HA 3AAAB 3HOEA 4G76A 3LK2A 4FZLA 2J1NA 3RBHA 4FZMA 2OMFA 3AA0B 4RLBA 2F1TA 3O0EA 1THQA 4O49A 2KZ7A 3T20A 3VZWX 4AYNA 2YPVA 5AFUK 1BH3A 2XTQA 2M06A 5PRNA 3VE2A 4AUIA 2MNHA 2ZLDA 1HXXA 3AA7A 4FUVA 1H6S1 2ERVA 4O4XA 4GCPA 3GP6A 3HWBA 4PUXA 3SYBA 4O3XB 3UPGA 4GF4A 1YS5A 3VY8X 8PRNA 3NSGA 3JTYA 4D65A 5ADXK 4AKRB 2J4UP 1BT9A 3AAAA 3UU2A 3PRNA 5DL8A 4N59A 3PQSA 4RJXA 4FOZA 3VZTX 4RL9A 3AA0A 3POQA 4GHBA 2LHFA 5DL5A 3AA6A 3VZUX 1Q9FA 2KXPB 4GCSA 4KR4A 5FVNA 1PHOA 3WI5A 4FESA 4FRXA 4AYID 2FGQX 2XE1A 3SYSA 3VE1A 2Y7SA 1MM4A 3HOLA 1IZNB 2K4TA 3FYXA 4D5UA 3LK41 4O3ZA 3AAEB 2XTRA 1ZHXA 2O4VA 5EE2A 5GV0A 4F4BA 3V8UA 3SY9A 3DA3A 3EMNX 3VY9X 4KRAA 4U9CA 3SY7A 4E1SA 4JFBA 5JDPA 4FMSA 4AYEC 4JCHA 3SZDA 2XE5A 2Y0KA 5G26A 1ORMA 3PORA 4D64A 4AYMC 4AKRA 3LK3B 4XNKA 4FRTA 1MPFA 7PRNA 5AFUL 5IYUA 1QJ8A 1PRNA 2N2LA 2KXPA 4Z3TA 2W80C 3A2SX 4RLCA 3PQUA 1MM5A 2KC0A 3HW9A 1GFNA 1Q9GA 2K0LA 2Y2XA 3AAEA 2M07A 1E54A 4C69X 3AA1B 3DA4A 2PRNA 6PRNA 1OSMA 2KZ7B 2ODJA 3WI4A 2GE4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSI A;  3K19 A;  2POR A;  2FGR A;  4FT6 A;  2XG6 A;  2Y0L A;  1GFP A;  2XE3 A;  4LSF A;  4FSO A;  3T24 A;  3POU A;  4LSH A;  1GFO A;  5DL7 A;  4KR8 A;  4FSP A;  3POX A;  3SZV A;  2XE2 A;  3T0S A;  1OPF A;  2QTK A;  4LSE A;  4GCQ A;  4RJW A;  5DL6 A;  1HXT A;  1GFQ A;  2ZFG A;  1HXU A;  1GFM A;  4BUM X;  2Y0H A;  2J1N A;  2OMF A;  3O0E A;  3T20 A;  3VZW X;  1BH3 A;  5PRN A;  4AUI A;  2ZLD A;  1HXX A;  1H6S 1;  3SYB A;  4GCP A;  3HWB A;  3UPG A;  3VY8 X;  8PRN A;  2J4U P;  3NSG A;  3JTY A;  4D65 A;  1BT9 A;  3UU2 A;  3PRN A;  5DL8 A;  4RJX A;  4FOZ A;  3VZT X;  5DL5 A;  3POQ A;  3VZU X;  4GCS A;  5FVN A;  4KR4 A;  1PHO A;  3WI5 A;  4FRX A;  2FGQ X;  2XE1 A;  3SYS A;  2K4T A;  3FYX A;  4D5U A;  2O4V A;  3VY9 X;  3SY9 A;  3EMN X;  4KRA A;  3SY7 A;  4JFB A;  5JDP A;  4FMS A;  3SZD A;  2XE5 A;  2Y0K A;  3POR A;  4D64 A;  4FRT A;  1MPF A;  7PRN A;  1PRN A;  3A2S X;  3HW9 A;  1GFN A;  2Y2X A;  6PRN A;  1E54 A;  4C69 X;  2PRN A;  1OSM A;  2ODJ A;  3WI4 A; 
#chains in the Genus database with same CATH topology
 1QJP A;  4LSI A;  4CTD A;  1ZHT A;  3JCU O;  3C5O A;  4O4U A;  2X27 X;  2XMX A;  4UB8 O;  3LK4 2;  1ZHZ A;  3K19 A;  2POR A;  2FGR A;  4FT6 A;  3G7G A;  3LK3 A;  5D5D A;  2LFU A;  2WJQ A;  2XG6 A;  2Y0L A;  1GFP A;  4N58 A;  4QQ1 A;  4XNL A;  4AFK A;  2XE3 A;  4AYD C;  2X9K A;  4FSO A;  1T16 A;  4LSF A;  3T24 A;  6PRN A;  4E1T A;  5KAF O;  3TZG A;  3POU A;  3QRC A;  4LSH A;  1GFO A;  1ZHW A;  4KR8 A;  4K3C A;  5DL7 A;  4FSP A;  5B5E O;  2W81 C;  3AA6 B;  5TIS O;  3POX A;  3AA1 A;  1QJ9 A;  3LK2 B;  1BXW A;  1IZN A;  3PF1 A;  3SZV A;  2XE2 A;  3T0S A;  3DZM A;  4AKM A;  3KVD D;  5G39 A;  5ADX L;  2R88 A;  5T5F A;  2N2M A;  4AZL A;  4C4V A;  3WU2 O;  3KZI O;  2MHL A;  4FZN A;  2KDY A;  2F1V A;  1OPF A;  2QTK A;  4LSE A;  1P4T A;  1T1L A;  4GCQ A;  2R89 A;  4RJW A;  3AA7 B;  3UAQ A;  5DL6 A;  4G75 A;  1G90 A;  1HXT A;  5GTI O;  3A0B O;  4B61 A;  4O3Y A;  1GFQ A;  2ZFG A;  3QRA A;  2R4L A;  4IL6 O;  4O3W A;  1ZHY A;  1HXU A;  2JMM A;  2R8A A;  1GFM A;  2YNK A;  2R4O A;  2Y0H A;  3AAA B;  4BUM X;  3HOE A;  4G76 A;  3LK2 A;  4FZL A;  2J1N A;  3RBH A;  4FZM A;  2OMF A;  3AA0 B;  4RLB A;  2F1T A;  3O0E A;  5G3A A;  1THQ A;  2WJR A;  4O49 A;  2KZ7 A;  3T20 A;  3PGS A;  3VZW X;  4AYN A;  4UB6 O;  2YPV A;  5AFU K;  1BH3 A;  2M06 A;  2AXT O;  2XTQ A;  5PRN A;  3VE2 A;  4AUI A;  2MNH A;  2ZLD A;  1HXX A;  5B66 O;  3DWO X;  3AA7 A;  2IWW A;  4FUV A;  1H6S 1;  2ERV A;  4O4X A;  4GCP A;  3GP6 A;  3HWB A;  4PJ0 O;  4PUX A;  3SYB A;  4O3X B;  4C00 A;  4GF4 A;  5H2F O;  3PGU A;  3UPG A;  1YS5 A;  3VY8 X;  8PRN A;  3NSG A;  3JTY A;  4D65 A;  5ADX K;  4AKR B;  5GTH O;  1BT9 A;  3AAA A;  3UU2 A;  3PRN A;  5DL8 A;  4N59 A;  3PQS A;  2IWV A;  1S5L O;  2JQY A;  4FOZ A;  4RJX A;  3AA0 A;  3POQ A;  4GHB A;  2LHF A;  4RL9 A;  5DL5 A;  3AA6 A;  3VZU X;  1Q9F A;  2KXP B;  4GCS A;  4K3B A;  4KR4 A;  1PHO A;  5FVN A;  3WI5 A;  4FES A;  4FQE A;  4FRX A;  4AYI D;  2FGQ X;  2XE1 A;  2F1C X;  3BS0 A;  3SYS A;  3VE1 A;  2R4P A;  1MM4 A;  2Y7S A;  3HOL A;  1IZN B;  2K4T A;  3FYX A;  4D5U A;  3LK4 1;  4O3Z A;  3AAE B;  2XTR A;  5E79 O;  1ZHX A;  2O4V A;  5EE2 A;  5GV0 A;  4F4B A;  2WVP A;  3V8U A;  3SY9 A;  3DA3 A;  2R4N A;  3EMN X;  4KRA A;  4U9C A;  3SY7 A;  3VY9 X;  4JFB A;  4E1S A;  5JDP A;  4FMS A;  4C4V B;  4AYE C;  4N75 A;  5G38 A;  4JCH A;  3SZD A;  2XE5 A;  2Y0K A;  5G26 A;  1ORM A;  3A0H O;  3POR A;  4D64 A;  4AYM C;  4AKR A;  4N74 A;  3LK3 B;  4XNK A;  4FRT A;  1MPF A;  7PRN A;  5AFU L;  3DWN A;  5IYU A;  3BRY A;  1QJ8 A;  1PRN A;  2N2L A;  2KXP A;  4Z3T A;  2W80 C;  3A2S X;  4RLC A;  3BRZ A;  3PQU A;  1MM5 A;  2KC0 A;  3HW9 A;  1GFN A;  1Q9G A;  3PGR A;  5KAI O;  2K0L A;  2Y2X A;  3AAE A;  3VZT X;  2J4U P;  2M07 A;  1E54 A;  4PR7 A;  3AA1 B;  3DA4 A;  2PRN A;  4C69 X;  1OSM A;  2KZ7 B;  2ODJ A;  3NJT A;  3WI4 A;  2GE4 A; 
#chains in the Genus database with same CATH homology
 1QJP A;  4LSI A;  1ZHT A;  3C5O A;  4O4U A;  2X27 X;  2XMX A;  3LK4 2;  1ZHZ A;  3K19 A;  2POR A;  2FGR A;  4FT6 A;  3G7G A;  3LK3 A;  5D5D A;  2LFU A;  2XG6 A;  2Y0L A;  1GFP A;  4N58 A;  4QQ1 A;  4XNL A;  4AFK A;  2XE3 A;  4AYD C;  4LSF A;  4FSO A;  3T24 A;  4E1T A;  3TZG A;  3POU A;  3QRC A;  4LSH A;  1GFO A;  1ZHW A;  4KR8 A;  5DL7 A;  4FSP A;  2W81 C;  3AA6 B;  3POX A;  3AA1 A;  1QJ9 A;  3LK2 B;  1BXW A;  1IZN A;  3SZV A;  2XE2 A;  3T0S A;  4AKM A;  3KVD D;  5ADX L;  5T5F A;  2N2M A;  4AZL A;  2MHL A;  4FZN A;  2KDY A;  2F1V A;  1OPF A;  2QTK A;  4LSE A;  1P4T A;  4GCQ A;  4RJW A;  3AA7 B;  3UAQ A;  5DL6 A;  4G75 A;  1G90 A;  1HXT A;  4B61 A;  4O3Y A;  1GFQ A;  2ZFG A;  3QRA A;  4O3W A;  1ZHY A;  1HXU A;  2JMM A;  2YNK A;  1GFM A;  4BUM X;  2Y0H A;  3AAA B;  3HOE A;  4G76 A;  3LK2 A;  4FZL A;  2J1N A;  3RBH A;  4FZM A;  2OMF A;  3AA0 B;  4RLB A;  2F1T A;  3O0E A;  1THQ A;  4O49 A;  2KZ7 A;  3T20 A;  3VZW X;  4AYN A;  2YPV A;  5AFU K;  1BH3 A;  2XTQ A;  2M06 A;  5PRN A;  3VE2 A;  4AUI A;  2MNH A;  2ZLD A;  1HXX A;  3AA7 A;  4FUV A;  1H6S 1;  2ERV A;  4O4X A;  4GCP A;  3GP6 A;  3HWB A;  4PUX A;  3SYB A;  4O3X B;  3UPG A;  4GF4 A;  1YS5 A;  3VY8 X;  8PRN A;  3NSG A;  3JTY A;  4D65 A;  5ADX K;  4AKR B;  2J4U P;  1BT9 A;  3AAA A;  3UU2 A;  3PRN A;  5DL8 A;  4N59 A;  3PQS A;  4RJX A;  4FOZ A;  3VZT X;  4RL9 A;  3AA0 A;  3POQ A;  4GHB A;  2LHF A;  5DL5 A;  3AA6 A;  3VZU X;  1Q9F A;  2KXP B;  4GCS A;  4KR4 A;  5FVN A;  1PHO A;  3WI5 A;  4FES A;  4FRX A;  4AYI D;  2FGQ X;  2XE1 A;  3SYS A;  3VE1 A;  2Y7S A;  1MM4 A;  3HOL A;  1IZN B;  2K4T A;  3FYX A;  4D5U A;  3LK4 1;  4O3Z A;  3AAE B;  2XTR A;  1ZHX A;  2O4V A;  5EE2 A;  5GV0 A;  4F4B A;  3V8U A;  3SY9 A;  3DA3 A;  3EMN X;  3VY9 X;  4KRA A;  4U9C A;  3SY7 A;  4E1S A;  4JFB A;  5JDP A;  4FMS A;  4AYE C;  4JCH A;  3SZD A;  2XE5 A;  2Y0K A;  5G26 A;  1ORM A;  3POR A;  4D64 A;  4AYM C;  4AKR A;  3LK3 B;  4XNK A;  4FRT A;  1MPF A;  7PRN A;  5AFU L;  5IYU A;  1QJ8 A;  1PRN A;  2N2L A;  2KXP A;  4Z3T A;  2W80 C;  3A2S X;  4RLC A;  3PQU A;  1MM5 A;  2KC0 A;  3HW9 A;  1GFN A;  1Q9G A;  2K0L A;  2Y2X A;  3AAE A;  2M07 A;  1E54 A;  4C69 X;  3AA1 B;  3DA4 A;  2PRN A;  6PRN A;  1OSM A;  2KZ7 B;  2ODJ A;  3WI4 A;  2GE4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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