2Y0KA

Crystal structure of pseudomonas aeruginosa opdo
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
388
structure length
364
Chain Sequence
HHHHDLVEDSHASLELRNFYFNRDFRGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords PYROGLUTATMATE PORIN OPDO
publication title Crystal Structure of Pseudomonas Aeruginosa Opdo
rcsb
source organism Pseudomonas aeruginosa
total genus 96
structure length 364
sequence length 388
ec nomenclature
pdb deposition date 2010-12-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2y0kA01
4FSPA 5DL7A 2QTKA 4FSOA 3HW9A 4GCSA 7PRNA 4D65A 3SYSA 4D5UA 3VZUX 1MPFA 3UU2A 1OSMA 4D64A 4LSIA 3A2SX 2XE3A 5FVNA 4FT6A 2OMFA 1GFQA 2XE1A 2O4VA 1HXXA 4JFBA 6PRNA 2K4TA 3T24A 2FGQX 4C69X 3UPGA 4RJWA 4FRTA 5DL5A 5PRNA 1GFMA 3VY9X 1GFOA 3K19A 4FMSA 4LSEA 1PHOA 5DL8A 3T0SA 5JDPA 3NSGA 4AUIA 2J1NA 1GFPA 4KR4A 3SZDA 4FRXA 4GCQA 4LSFA 1BH3A 2XG6A 2Y2XA 4GCPA 2ZFGA 1PRNA 3PORA 3SYBA 3VY8X 1OPFA 3T20A 1E54A 2XE5A 3EMNX 2XE2A 1HXUA 3POXA 4FOZA 2FGRA 2Y0KA 3VZWX 3SY7A 2Y0LA 2ODJA 2PORA 2ZLDA 2J4UP 3WI4A 3WI5A 5DL6A 3O0EA 2Y0HA 4KR8A 3FYXA 3POUA 4LSHA 4RJXA 3POQA 4KRAA 3PRNA 3JTYA 3SZVA 3VZTX 3SY9A 1H6S1 3HWBA 1HXTA 2PRNA 8PRNA 1BT9A 4BUMX 1GFNA
chains in the Genus database with same CATH superfamily
4FSPA 5DL7A 2QTKA 4FSOA 3HW9A 4GCSA 2F1CX 2K0LA 3UAQA 3AA6A 3GP6A 4O3ZA 7PRNA 1THQA 4PR7A 4N58A 3PGUA 3SYSA 4D65A 3G7GA 4D5UA 5IYUA 1YS5A 3C5OA 3VZUX 1MPFA 2KDYA 4FZMA 3UU2A 1T1LA 2W80C 1OSMA 3HOEA 4D64A 2KZ7B 2F1TA 4Z3TA 2KC0A 4LSIA 3A2SX 2WVPA 2XMXA 3AAEA 5ADXL 2XE3A 1IZNB 2IWWA 5FVNA 4FT6A 5G26A 4IL6O 2J4UP 2OMFA 1GFQA 2XE1A 4XNLA 5D5DA 5KAIO 4AYID 2M07A 2O4VA 1HXXA 4O3WA 3DA3A 2R4NA 3DA4A 3PGRA 2MHLA 4JFBA 1BXWA 2N2MA 6PRNA 4QQ1A 2WJRA 5GV0A 4O3YA 2K4TA 2LHFA 4AYMC 2Y7SA 2JQYA 2R4OA 1ZHWA 4U9CA 2FGQX 4UB8O 3T24A 4C69X 3UPGA 4RJWA 3RBHA 5H2FO 4GHBA 1Q9GA 5E79O 3LK41 2GE4A 4XNKA 4AZLA 4O3XB 4FRTA 3A0HO 5DL5A 3AA1B 3TZGA 4AYNA 1MM4A 1QJPA 4G76A 5PRNA 4FZLA 4RLBA 5B5EO 1GFMA 3VY9X 4AFKA 1GFOA 2MNHA 1MM5A 3K19A 3PGSA 4O49A 4N75A 2LFUA 4AKRB 4FMSA 3PF1A 2X9KA 4LSEA 1PHOA 5GTHO 4FESA 5DL8A 2R4LA 3T0SA 5JDPA 3NSGA 5G3AA 2J1NA 1GFPA 2M06A 4AUIA 4C4VB 3VE1A 4KR4A 3SZDA 2R88A 3V8UA 4FRXA 4GCQA 3PQSA 3AA0B 4RL9A 4LSFA 1QJ8A 1ZHXA 4PUXA 1BH3A 1Q9FA 2XG6A 4O4XA 2KXPB 5AFUK 3HOLA 2Y2XA 2AXTO 2KZ7A 2X27X 3QRAA 4O4UA 3AA6B 5GTIO 3DWOX 1IZNA 2F1VA 2ZFGA 1PRNA 3DWNA 3LK3B 3PORA 4GCPA 3SYBA 3VY8X 1OPFA 4B61A 3LK2B 3T20A 4E1TA 2N2LA 4PJ0O 3AA7B 1E54A 4AYEC 5EE2A 2ERVA 2XTQA 2XE5A 4JCHA 3EMNX 5TISO 2XE2A 3AAAB 1HXUA 3POXA 2R89A 4FOZA 4G75A 3VE2A 2FGRA 2Y0KA 3VZWX 3JCUO 4FQEA 3SY7A 2ODJA 2Y0LA 2YNKA 3A0BO 4K3CA 1P4TA 2PORA 4GF4A 5G38A 5KAFO 2KXPA 5B66O 2ZLDA 4FUVA 4C00A 4N74A 3WI5A 5DL6A 2JMMA 5T5FA 2R4PA 3O0EA 3WI4A 2Y0HA 2W81C 4KR8A 1ZHYA 3FYXA 3POUA 4LSHA 4RJXA 3LK3A 3POQA 3QRCA 5G39A 3AA1A 4KRAA 3PRNA 4F4BA 3JTYA 1ZHZA 3LK2A 5ADXK 1QJ9A 3SZVA 4AYDC 1ZHTA 3AA7A 3VZTX 4CTDA 5AFUL 3SY9A 1H6S1 3HWBA 2YPVA 1HXTA 3BS0A 3LK42 4AKMA 3KVDD 2PRNA 3AAAA 3KZIO 3PQUA 8PRNA 4AKRA 1ORMA 3DZMA 3WU2O 2XTRA 2WJQA 1S5LO 4RLCA 1BT9A 1G90A 3AAEB 2R8AA 3NJTA 1T16A 3BRZA 4FZNA 4C4VA 4K3BA 3BRYA 2IWVA 4UB6O 4BUMX 4E1SA 4N59A 1GFNA 3AA0A
chains in the Genus database with same CATH topology
4FSPA 5DL7A 2QTKA 4FSOA 3HW9A 4GCSA 2K0LA 3UAQA 3AA6A 3GP6A 4O3ZA 7PRNA 1THQA 4D65A 4N58A 3SYSA 3G7GA 4D5UA 5IYUA 1YS5A 3C5OA 3VZUX 1MPFA 2KDYA 4FZMA 3UU2A 2W80C 1OSMA 3HOEA 4D64A 2KZ7B 2F1TA 4Z3TA 2KC0A 4LSIA 3A2SX 2XMXA 3AAEA 5ADXL 2XE3A 1IZNB 5FVNA 4FT6A 5G26A 2OMFA 1GFQA 2XE1A 4XNLA 5D5DA 4AYID 2M07A 2O4VA 1HXXA 4O3WA 3DA3A 3DA4A 2MHLA 4JFBA 1BXWA 2N2MA 6PRNA 4QQ1A 5GV0A 4O3YA 2K4TA 2LHFA 4AYMC 2Y7SA 4U9CA 3T24A 1ZHWA 2FGQX 4C69X 3UPGA 4RJWA 3RBHA 4GHBA 1Q9GA 3LK41 2GE4A 4XNKA 4AZLA 4O3XB 4FRTA 5DL5A 3AA1B 3TZGA 4AYNA 1MM4A 1QJPA 4G76A 5PRNA 4FZLA 4RLBA 1GFMA 3VY9X 4AFKA 1GFOA 2MNHA 1MM5A 3K19A 4O49A 2LFUA 4AKRB 4FMSA 4LSEA 1PHOA 4FESA 5DL8A 3T0SA 5JDPA 3NSGA 4AUIA 2J1NA 1GFPA 2M06A 3VE1A 4KR4A 3SZDA 3V8UA 4FRXA 4GCQA 3PQSA 3AA0B 4RL9A 4LSFA 1QJ8A 1ZHXA 4PUXA 1BH3A 1Q9FA 2XG6A 4O4XA 2KXPB 5AFUK 3HOLA 2Y2XA 2X27X 2KZ7A 3QRAA 4O4UA 3AA6B 1IZNA 2F1VA 2ZFGA 1PRNA 3LK3B 3PORA 4GCPA 3SYBA 3VY8X 4B61A 1OPFA 3LK2B 3T20A 4E1TA 2N2LA 3AA7B 1E54A 4AYEC 5EE2A 2XTQA 2ERVA 2XE5A 4JCHA 3EMNX 2XE2A 3AAAB 1HXUA 3POXA 4FOZA 4G75A 3VE2A 2FGRA 2Y0KA 3VZWX 3SY7A 2ODJA 2Y0LA 2YNKA 1P4TA 2PORA 4GF4A 2KXPA 2ZLDA 4FUVA 2J4UP 3WI4A 3WI5A 5DL6A 2JMMA 5T5FA 3O0EA 2Y0HA 2W81C 4KR8A 1ZHYA 3FYXA 3POUA 4LSHA 4RJXA 3LK3A 3POQA 3QRCA 4F4BA 3AA1A 4KRAA 3PRNA 3JTYA 1ZHZA 3LK2A 5ADXK 1QJ9A 3SZVA 4AYDC 1ZHTA 3AA7A 3VZTX 5AFUL 3SY9A 1H6S1 3HWBA 2YPVA 1HXTA 3LK42 4AKMA 3KVDD 2PRNA 3AAAA 3PQUA 8PRNA 4AKRA 1ORMA 2XTRA 4RLCA 1BT9A 1G90A 3AAEB 4FZNA 4BUMX 4E1SA 4N59A 1GFNA 3AA0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FSP A;  5DL7 A;  2QTK A;  4FSO A;  3HW9 A;  4GCS A;  7PRN A;  4D65 A;  3SYS A;  4D5U A;  3VZU X;  1MPF A;  3UU2 A;  1OSM A;  4D64 A;  4LSI A;  3A2S X;  2XE3 A;  5FVN A;  4FT6 A;  2OMF A;  1GFQ A;  2XE1 A;  2O4V A;  1HXX A;  4JFB A;  6PRN A;  2K4T A;  3T24 A;  2FGQ X;  4C69 X;  3UPG A;  4RJW A;  4FRT A;  5DL5 A;  5PRN A;  1GFM A;  3VY9 X;  1GFO A;  3K19 A;  4FMS A;  4LSE A;  1PHO A;  5DL8 A;  3T0S A;  5JDP A;  3NSG A;  4AUI A;  2J1N A;  1GFP A;  4KR4 A;  3SZD A;  4FRX A;  4GCQ A;  4LSF A;  1BH3 A;  2XG6 A;  2Y2X A;  4GCP A;  2ZFG A;  1PRN A;  3POR A;  3SYB A;  3VY8 X;  1OPF A;  3T20 A;  1E54 A;  2XE5 A;  3EMN X;  2XE2 A;  1HXU A;  3POX A;  4FOZ A;  2FGR A;  2Y0K A;  3VZW X;  3SY7 A;  2Y0L A;  2ODJ A;  2POR A;  2ZLD A;  2J4U P;  3WI4 A;  3WI5 A;  5DL6 A;  3O0E A;  2Y0H A;  4KR8 A;  3FYX A;  3POU A;  4LSH A;  4RJX A;  3POQ A;  4KRA A;  3PRN A;  3JTY A;  3SZV A;  3VZT X;  3SY9 A;  1H6S 1;  3HWB A;  1HXT A;  2PRN A;  8PRN A;  1BT9 A;  4BUM X;  1GFN A; 
#chains in the Genus database with same CATH topology
 4FSP A;  5DL7 A;  2QTK A;  4FSO A;  3HW9 A;  4GCS A;  2F1C X;  2K0L A;  3UAQ A;  3AA6 A;  3GP6 A;  4O3Z A;  7PRN A;  1THQ A;  4PR7 A;  4N58 A;  3PGU A;  3SYS A;  4D65 A;  3G7G A;  4D5U A;  5IYU A;  1YS5 A;  3C5O A;  3VZU X;  1MPF A;  2KDY A;  4FZM A;  3UU2 A;  1T1L A;  2W80 C;  1OSM A;  3HOE A;  4D64 A;  2KZ7 B;  2F1T A;  4Z3T A;  2KC0 A;  4LSI A;  3A2S X;  2WVP A;  2XMX A;  3AAE A;  5ADX L;  2XE3 A;  1IZN B;  2IWW A;  5FVN A;  4FT6 A;  5G26 A;  4IL6 O;  2J4U P;  2OMF A;  1GFQ A;  2XE1 A;  4XNL A;  5D5D A;  5KAI O;  4AYI D;  2M07 A;  2O4V A;  1HXX A;  4O3W A;  3DA3 A;  2R4N A;  3DA4 A;  3PGR A;  2MHL A;  4JFB A;  1BXW A;  2N2M A;  6PRN A;  4QQ1 A;  2WJR A;  5GV0 A;  4O3Y A;  2K4T A;  2LHF A;  4AYM C;  2Y7S A;  2JQY A;  2R4O A;  1ZHW A;  4U9C A;  2FGQ X;  4UB8 O;  3T24 A;  4C69 X;  3UPG A;  4RJW A;  3RBH A;  5H2F O;  4GHB A;  1Q9G A;  5E79 O;  3LK4 1;  2GE4 A;  4XNK A;  4AZL A;  4O3X B;  4FRT A;  3A0H O;  5DL5 A;  3AA1 B;  3TZG A;  4AYN A;  1MM4 A;  1QJP A;  4G76 A;  5PRN A;  4FZL A;  4RLB A;  5B5E O;  1GFM A;  3VY9 X;  4AFK A;  1GFO A;  2MNH A;  1MM5 A;  3K19 A;  3PGS A;  4O49 A;  4N75 A;  2LFU A;  4AKR B;  4FMS A;  3PF1 A;  2X9K A;  4LSE A;  1PHO A;  5GTH O;  4FES A;  5DL8 A;  2R4L A;  3T0S A;  5JDP A;  3NSG A;  5G3A A;  2J1N A;  1GFP A;  2M06 A;  4AUI A;  4C4V B;  3VE1 A;  4KR4 A;  3SZD A;  2R88 A;  3V8U A;  4FRX A;  4GCQ A;  3PQS A;  3AA0 B;  4RL9 A;  4LSF A;  1QJ8 A;  1ZHX A;  4PUX A;  1BH3 A;  1Q9F A;  2XG6 A;  4O4X A;  2KXP B;  5AFU K;  3HOL A;  2Y2X A;  2AXT O;  2KZ7 A;  2X27 X;  3QRA A;  4O4U A;  3AA6 B;  5GTI O;  3DWO X;  1IZN A;  2F1V A;  2ZFG A;  1PRN A;  3DWN A;  3LK3 B;  3POR A;  4GCP A;  3SYB A;  3VY8 X;  1OPF A;  4B61 A;  3LK2 B;  3T20 A;  4E1T A;  2N2L A;  4PJ0 O;  3AA7 B;  1E54 A;  4AYE C;  5EE2 A;  2ERV A;  2XTQ A;  2XE5 A;  4JCH A;  3EMN X;  5TIS O;  2XE2 A;  3AAA B;  1HXU A;  3POX A;  2R89 A;  4FOZ A;  4G75 A;  3VE2 A;  2FGR A;  2Y0K A;  3VZW X;  3JCU O;  4FQE A;  3SY7 A;  2ODJ A;  2Y0L A;  2YNK A;  3A0B O;  4K3C A;  1P4T A;  2POR A;  4GF4 A;  5G38 A;  5KAF O;  2KXP A;  5B66 O;  2ZLD A;  4FUV A;  4C00 A;  4N74 A;  3WI5 A;  5DL6 A;  2JMM A;  5T5F A;  2R4P A;  3O0E A;  3WI4 A;  2Y0H A;  2W81 C;  4KR8 A;  1ZHY A;  3FYX A;  3POU A;  4LSH A;  4RJX A;  3LK3 A;  3POQ A;  3QRC A;  5G39 A;  3AA1 A;  4KRA A;  3PRN A;  4F4B A;  3JTY A;  1ZHZ A;  3LK2 A;  5ADX K;  1QJ9 A;  3SZV A;  4AYD C;  1ZHT A;  3AA7 A;  3VZT X;  4CTD A;  5AFU L;  3SY9 A;  1H6S 1;  3HWB A;  2YPV A;  1HXT A;  3BS0 A;  3LK4 2;  4AKM A;  3KVD D;  2PRN A;  3AAA A;  3KZI O;  3PQU A;  8PRN A;  4AKR A;  1ORM A;  3DZM A;  3WU2 O;  2XTR A;  2WJQ A;  1S5L O;  4RLC A;  1BT9 A;  1G90 A;  3AAE B;  2R8A A;  3NJT A;  1T16 A;  3BRZ A;  4FZN A;  4C4V A;  4K3B A;  3BRY A;  2IWV A;  4UB6 O;  4BUM X;  4E1S A;  4N59 A;  1GFN A;  3AA0 A; 
#chains in the Genus database with same CATH homology
 4FSP A;  5DL7 A;  2QTK A;  4FSO A;  3HW9 A;  4GCS A;  2K0L A;  3UAQ A;  3AA6 A;  3GP6 A;  4O3Z A;  7PRN A;  1THQ A;  4D65 A;  4N58 A;  3SYS A;  3G7G A;  4D5U A;  5IYU A;  1YS5 A;  3C5O A;  3VZU X;  1MPF A;  2KDY A;  4FZM A;  3UU2 A;  2W80 C;  1OSM A;  3HOE A;  4D64 A;  2KZ7 B;  2F1T A;  4Z3T A;  2KC0 A;  4LSI A;  3A2S X;  2XMX A;  3AAE A;  5ADX L;  2XE3 A;  1IZN B;  5FVN A;  4FT6 A;  5G26 A;  2OMF A;  1GFQ A;  2XE1 A;  4XNL A;  5D5D A;  4AYI D;  2M07 A;  2O4V A;  1HXX A;  4O3W A;  3DA3 A;  3DA4 A;  2MHL A;  4JFB A;  1BXW A;  2N2M A;  6PRN A;  4QQ1 A;  5GV0 A;  4O3Y A;  2K4T A;  2LHF A;  4AYM C;  2Y7S A;  4U9C A;  3T24 A;  1ZHW A;  2FGQ X;  4C69 X;  3UPG A;  4RJW A;  3RBH A;  4GHB A;  1Q9G A;  3LK4 1;  2GE4 A;  4XNK A;  4AZL A;  4O3X B;  4FRT A;  5DL5 A;  3AA1 B;  3TZG A;  4AYN A;  1MM4 A;  1QJP A;  4G76 A;  5PRN A;  4FZL A;  4RLB A;  1GFM A;  3VY9 X;  4AFK A;  1GFO A;  2MNH A;  1MM5 A;  3K19 A;  4O49 A;  2LFU A;  4AKR B;  4FMS A;  4LSE A;  1PHO A;  4FES A;  5DL8 A;  3T0S A;  5JDP A;  3NSG A;  4AUI A;  2J1N A;  1GFP A;  2M06 A;  3VE1 A;  4KR4 A;  3SZD A;  3V8U A;  4FRX A;  4GCQ A;  3PQS A;  3AA0 B;  4RL9 A;  4LSF A;  1QJ8 A;  1ZHX A;  4PUX A;  1BH3 A;  1Q9F A;  2XG6 A;  4O4X A;  2KXP B;  5AFU K;  3HOL A;  2Y2X A;  2X27 X;  2KZ7 A;  3QRA A;  4O4U A;  3AA6 B;  1IZN A;  2F1V A;  2ZFG A;  1PRN A;  3LK3 B;  3POR A;  4GCP A;  3SYB A;  3VY8 X;  4B61 A;  1OPF A;  3LK2 B;  3T20 A;  4E1T A;  2N2L A;  3AA7 B;  1E54 A;  4AYE C;  5EE2 A;  2XTQ A;  2ERV A;  2XE5 A;  4JCH A;  3EMN X;  2XE2 A;  3AAA B;  1HXU A;  3POX A;  4FOZ A;  4G75 A;  3VE2 A;  2FGR A;  2Y0K A;  3VZW X;  3SY7 A;  2ODJ A;  2Y0L A;  2YNK A;  1P4T A;  2POR A;  4GF4 A;  2KXP A;  2ZLD A;  4FUV A;  2J4U P;  3WI4 A;  3WI5 A;  5DL6 A;  2JMM A;  5T5F A;  3O0E A;  2Y0H A;  2W81 C;  4KR8 A;  1ZHY A;  3FYX A;  3POU A;  4LSH A;  4RJX A;  3LK3 A;  3POQ A;  3QRC A;  4F4B A;  3AA1 A;  4KRA A;  3PRN A;  3JTY A;  1ZHZ A;  3LK2 A;  5ADX K;  1QJ9 A;  3SZV A;  4AYD C;  1ZHT A;  3AA7 A;  3VZT X;  5AFU L;  3SY9 A;  1H6S 1;  3HWB A;  2YPV A;  1HXT A;  3LK4 2;  4AKM A;  3KVD D;  2PRN A;  3AAA A;  3PQU A;  8PRN A;  4AKR A;  1ORM A;  2XTR A;  4RLC A;  1BT9 A;  1G90 A;  3AAE B;  4FZN A;  4BUM X;  4E1S A;  4N59 A;  1GFN A;  3AA0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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