2Y0KA

Crystal structure of pseudomonas aeruginosa opdo
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
388
structure length
364
Chain Sequence
HHHHDLVEDSHASLELRNFYFNRDFRGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords PYROGLUTATMATE PORIN OPDO
publication title Crystal Structure of Pseudomonas Aeruginosa Opdo
rcsb
source organism Pseudomonas aeruginosa
total genus 96
structure length 364
sequence length 388
ec nomenclature
pdb deposition date 2010-12-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2y0kA01
8PRNA 2OMFA 1GFPA 2ZFGA 1H6S1 4KR4A 1HXXA 4BUMX 3UU2A 1GFQA 3POUA 1HXTA 2Y0HA 5DL6A 2PRNA 2XG6A 3T24A 4LSHA 2FGQX 2ZLDA 3EMNX 2FGRA 3NSGA 4JFBA 1GFNA 4KRAA 3SY7A 7PRNA 3T0SA 1GFMA 2XE3A 3VZWX 3T20A 4AUIA 3O0EA 3VZUX 1GFOA 1HXUA 4LSIA 3SYSA 1OSMA 2QTKA 3PORA 3UPGA 1PHOA 2PORA 2O4VA 6PRNA 5DL5A 2Y0KA 3POXA 4GCPA 4FRTA 4FSPA 3POQA 2ODJA 3WI5A 5FVNA 3WI4A 3PRNA 1BH3A 1PRNA 3FYXA 3SYBA 3HW9A 2J1NA 2J4UP 2Y2XA 2K4TA 1MPFA 5DL8A 3K19A 4LSFA 4FSOA 4RJXA 4FMSA 4RJWA 3VY8X 5PRNA 1OPFA 2XE2A 4FT6A 4LSEA 1E54A 3HWBA 4FOZA 2XE1A 4FRXA 5DL7A 3JTYA 3SY9A 3A2SX 3SZDA 1BT9A 4D5UA 3SZVA 2Y0LA 3VY9X 3VZTX 4C69X 4GCQA 4GCSA 4D65A 4KR8A 2XE5A 4D64A 5JDPA
chains in the Genus database with same CATH superfamily
2XMXA 4FZLA 3UAQA 2OMFA 3AA7A 3LK3B 8PRNA 5EE2A 1GFPA 4O3YA 2YNKA 2ZFGA 3DZMA 1Q9GA 4GHBA 2WVPA 4RLCA 2AXTO 1H6S1 2R89A 2X9KA 3VE2A 4C4VB 4KR4A 5G39A 1HXXA 4BUMX 2XTRA 3AA7B 3UU2A 1GFQA 3KZIO 3POUA 5GTIO 3KVDD 1HXTA 2M06A 2N2LA 3LK3A 2Y0HA 5DL6A 4AYEC 2PRNA 2XG6A 2R8AA 5G38A 4AYMC 2W81C 2LHFA 2M07A 3T24A 1ZHWA 1G90A 4UB6O 3PGUA 3AA1B 4LSHA 4RL9A 2FGQX 4E1SA 4Z3TA 2ZLDA 3EMNX 4PUXA 2KC0A 2FGRA 2YPVA 3HOLA 5T5FA 3NSGA 4JFBA 1GFNA 3AAEB 4KRAA 3SY7A 3BRZA 4N59A 4XNLA 7PRNA 2IWWA 3QRCA 3T0SA 1GFMA 2XE3A 3VZWX 3T20A 4AUIA 1ZHZA 2IWVA 3O0EA 5KAFO 1QJ9A 4UB8O 3PGSA 4O49A 5H2FO 5JDPA 2KDYA 3JCUO 3RBHA 3VZUX 5ADXL 2WJRA 1GFOA 1HXUA 1YS5A 3AA1A 1T16A 3LK2A 1QJ8A 1OSMA 3LK42 4LSIA 3DA4A 3GP6A 4U9CA 2QTKA 3PORA 5D5DA 3V8UA 1S5LO 3DWOX 3VE1A 3AAEA 3UPGA 3PGRA 1PHOA 3A0BO 4O3XB 3G7GA 5B66O 5G3AA 5E79O 3DA3A 1BXWA 3PQSA 2XTQA 2PORA 4FZMA 2O4VA 3TZGA 5AFUK 2Y0KA 2KZ7A 2K0LA 3POXA 3AA0B 3LK2B 4QQ1A 2WJQA 5DL5A 4GCPA 4FRTA 5GTHO 3AA6A 3POQA 4FSPA 2ODJA 3WI5A 5AFUL 5FVNA 2LFUA 5G26A 3C5OA 4AFKA 4JCHA 3WI4A 2F1VA 3PRNA 4AKRA 4F4BA 2R88A 1IZNB 3SYSA 3DWNA 1BH3A 1PRNA 2MHLA 3FYXA 4IL6O 2R4OA 3HW9A 4G75A 3SYBA 2J1NA 2KZ7B 4CTDA 4G76A 2J4UP 3AAAA 2X27X 3BS0A 3AA6B 2Y2XA 5IYUA 2K4TA 3WU2O 1MPFA 2GE4A 3AA0A 5DL8A 1ORMA 3K19A 3QRAA 4LSFA 4AKRB 4AYDC 3PF1A 4O3WA 5B5EO 4FSOA 4RJXA 4FMSA 1P4TA 4N75A 4RJWA 3VY8X 5PRNA 4AYNA 4AZLA 4C00A 1QJPA 2R4NA 1OPFA 1IZNA 2XE2A 1MM4A 1MM5A 3AAAB 1E54A 4FT6A 4LSEA 5KAIO 3HWBA 2R4LA 3LK41 4FOZA 2W80C 2ERVA 2XE1A 4FRXA 4FUVA 5DL7A 4FQEA 1ZHTA 2F1CX 4O3ZA 4B61A 3JTYA 3SY9A 4K3BA 2Y7SA 4O4UA 1ZHYA 2KXPB 3A2SX 5GV0A 3SZDA 4FESA 4FZNA 2N2MA 4AKMA 3NJTA 4GF4A 4AYID 2JQYA 4E1TA 4O4XA 4RLBA 2MNHA 1BT9A 5TISO 3HOEA 3PQUA 4D5UA 4XNKA 6PRNA 4K3CA 3A0HO 1Q9FA 1ZHXA 3SZVA 2Y0LA 5ADXK 3VY9X 2R4PA 4N58A 4PJ0O 4PR7A 3VZTX 4C69X 3BRYA 1T1LA 2JMMA 4GCSA 2F1TA 4GCQA 2XE5A 4KR8A 2KXPA 4C4VA 4D65A 4D64A 4N74A 1THQA
chains in the Genus database with same CATH topology
2XMXA 4FZLA 3UAQA 2OMFA 3AA7A 3LK3B 8PRNA 5EE2A 1GFPA 4O3YA 2YNKA 2ZFGA 1Q9GA 4GHBA 4RLCA 1H6S1 3VE2A 4KR4A 1HXXA 4BUMX 2XTRA 3AA7B 3UU2A 1GFQA 3POUA 3KVDD 1HXTA 2M06A 2N2LA 3LK3A 2Y0HA 5DL6A 4AYEC 2PRNA 2XG6A 4AYMC 2W81C 2LHFA 2M07A 3T24A 1ZHWA 1G90A 4LSHA 3AA1B 4RL9A 4E1SA 2FGQX 4Z3TA 2ZLDA 3EMNX 4PUXA 2KC0A 2FGRA 2YPVA 3HOLA 5T5FA 3NSGA 4JFBA 1GFNA 3AAEB 4KRAA 3SY7A 4N59A 4XNLA 7PRNA 3QRCA 3T0SA 1GFMA 2XE3A 3VZWX 3T20A 4AUIA 1ZHZA 3O0EA 1QJ9A 4O49A 2KDYA 5ADXL 3RBHA 3VZUX 4QQ1A 1GFOA 1HXUA 1YS5A 3AA1A 3LK2A 4LSIA 1QJ8A 1OSMA 3LK42 4U9CA 3DA4A 3GP6A 3SYSA 2QTKA 3PORA 5D5DA 3V8UA 3VE1A 3UPGA 3AAEA 1PHOA 4O3XB 3G7GA 3DA3A 1BXWA 3PQSA 2XTQA 2PORA 4FZMA 2O4VA 3TZGA 5AFUK 2Y0KA 2KZ7A 2K0LA 3POXA 3AA0B 3LK2B 5DL5A 6PRNA 4GCPA 4FRTA 3AA6A 3POQA 4FSPA 2ODJA 3WI5A 5AFUL 5FVNA 2LFUA 5G26A 3C5OA 4AFKA 4JCHA 3WI4A 2F1VA 3PRNA 4AKRA 4F4BA 1IZNB 1BH3A 1PRNA 2MHLA 3FYXA 4G75A 3HW9A 3SYBA 2J1NA 2KZ7B 4G76A 2J4UP 3AAAA 2X27X 3AA6B 2Y2XA 5IYUA 2K4TA 1MPFA 2GE4A 3AA0A 5DL8A 1ORMA 3K19A 3QRAA 4LSFA 4AKRB 4AYDC 4O3WA 4FSOA 4RJXA 4FMSA 1P4TA 4RJWA 3VY8X 4AZLA 5PRNA 4AYNA 1QJPA 1OPFA 1IZNA 2XE2A 1MM4A 1MM5A 3AAAB 1E54A 4FT6A 4LSEA 3HWBA 3LK41 4FOZA 2W80C 2ERVA 2XE1A 4FRXA 4FUVA 5DL7A 1ZHTA 4O3ZA 4B61A 3JTYA 3SY9A 2Y7SA 4O4UA 1ZHYA 2KXPB 3A2SX 5GV0A 3SZDA 4FESA 4FZNA 2N2MA 4AKMA 4GF4A 4AYID 4E1TA 4O4XA 4RLBA 2MNHA 1BT9A 3HOEA 3PQUA 4D5UA 4XNKA 1Q9FA 1ZHXA 3SZVA 2Y0LA 5ADXK 3VY9X 3VZTX 4N58A 4C69X 4GCQA 2JMMA 4GCSA 2F1TA 4KR8A 2XE5A 4D65A 2KXPA 4D64A 5JDPA 1THQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 8PRN A;  2OMF A;  1GFP A;  2ZFG A;  1H6S 1;  4KR4 A;  1HXX A;  4BUM X;  3UU2 A;  1GFQ A;  3POU A;  1HXT A;  2Y0H A;  5DL6 A;  2PRN A;  2XG6 A;  3T24 A;  4LSH A;  2FGQ X;  2ZLD A;  3EMN X;  2FGR A;  3NSG A;  4JFB A;  1GFN A;  4KRA A;  3SY7 A;  7PRN A;  3T0S A;  1GFM A;  2XE3 A;  3VZW X;  3T20 A;  4AUI A;  3O0E A;  3VZU X;  1GFO A;  1HXU A;  4LSI A;  3SYS A;  1OSM A;  2QTK A;  3POR A;  3UPG A;  1PHO A;  2POR A;  2O4V A;  6PRN A;  5DL5 A;  2Y0K A;  3POX A;  4GCP A;  4FRT A;  4FSP A;  3POQ A;  2ODJ A;  3WI5 A;  5FVN A;  3WI4 A;  3PRN A;  1BH3 A;  1PRN A;  3FYX A;  3SYB A;  3HW9 A;  2J1N A;  2J4U P;  2Y2X A;  2K4T A;  1MPF A;  5DL8 A;  3K19 A;  4LSF A;  4FSO A;  4RJX A;  4FMS A;  4RJW A;  3VY8 X;  5PRN A;  1OPF A;  2XE2 A;  4FT6 A;  4LSE A;  1E54 A;  3HWB A;  4FOZ A;  2XE1 A;  4FRX A;  5DL7 A;  3JTY A;  3SY9 A;  3A2S X;  3SZD A;  1BT9 A;  4D5U A;  3SZV A;  2Y0L A;  3VY9 X;  3VZT X;  4C69 X;  4GCQ A;  4GCS A;  4D65 A;  4KR8 A;  2XE5 A;  4D64 A;  5JDP A; 
#chains in the Genus database with same CATH topology
 2XMX A;  4FZL A;  3UAQ A;  2OMF A;  3AA7 A;  3LK3 B;  8PRN A;  5EE2 A;  1GFP A;  4O3Y A;  2YNK A;  2ZFG A;  3DZM A;  1Q9G A;  4GHB A;  2WVP A;  4RLC A;  2AXT O;  1H6S 1;  2R89 A;  2X9K A;  3VE2 A;  4C4V B;  4KR4 A;  5G39 A;  1HXX A;  4BUM X;  2XTR A;  3AA7 B;  3UU2 A;  1GFQ A;  3KZI O;  3POU A;  5GTI O;  3KVD D;  1HXT A;  2M06 A;  2N2L A;  3LK3 A;  2Y0H A;  5DL6 A;  4AYE C;  2PRN A;  2XG6 A;  2R8A A;  5G38 A;  4AYM C;  2W81 C;  2LHF A;  2M07 A;  3T24 A;  1ZHW A;  1G90 A;  4UB6 O;  3PGU A;  3AA1 B;  4LSH A;  4RL9 A;  2FGQ X;  4E1S A;  4Z3T A;  2ZLD A;  3EMN X;  4PUX A;  2KC0 A;  2FGR A;  2YPV A;  3HOL A;  5T5F A;  3NSG A;  4JFB A;  1GFN A;  3AAE B;  4KRA A;  3SY7 A;  3BRZ A;  4N59 A;  4XNL A;  7PRN A;  2IWW A;  3QRC A;  3T0S A;  1GFM A;  2XE3 A;  3VZW X;  3T20 A;  4AUI A;  1ZHZ A;  2IWV A;  3O0E A;  5KAF O;  1QJ9 A;  4UB8 O;  3PGS A;  4O49 A;  5H2F O;  5JDP A;  2KDY A;  3JCU O;  3RBH A;  3VZU X;  5ADX L;  2WJR A;  1GFO A;  1HXU A;  1YS5 A;  3AA1 A;  1T16 A;  3LK2 A;  1QJ8 A;  1OSM A;  3LK4 2;  4LSI A;  3DA4 A;  3GP6 A;  4U9C A;  2QTK A;  3POR A;  5D5D A;  3V8U A;  1S5L O;  3DWO X;  3VE1 A;  3AAE A;  3UPG A;  3PGR A;  1PHO A;  3A0B O;  4O3X B;  3G7G A;  5B66 O;  5G3A A;  5E79 O;  3DA3 A;  1BXW A;  3PQS A;  2XTQ A;  2POR A;  4FZM A;  2O4V A;  3TZG A;  5AFU K;  2Y0K A;  2KZ7 A;  2K0L A;  3POX A;  3AA0 B;  3LK2 B;  4QQ1 A;  2WJQ A;  5DL5 A;  4GCP A;  4FRT A;  5GTH O;  3AA6 A;  3POQ A;  4FSP A;  2ODJ A;  3WI5 A;  5AFU L;  5FVN A;  2LFU A;  5G26 A;  3C5O A;  4AFK A;  4JCH A;  3WI4 A;  2F1V A;  3PRN A;  4AKR A;  4F4B A;  2R88 A;  1IZN B;  3SYS A;  3DWN A;  1BH3 A;  1PRN A;  2MHL A;  3FYX A;  4IL6 O;  2R4O A;  3HW9 A;  4G75 A;  3SYB A;  2J1N A;  2KZ7 B;  4CTD A;  4G76 A;  2J4U P;  3AAA A;  2X27 X;  3BS0 A;  3AA6 B;  2Y2X A;  5IYU A;  2K4T A;  3WU2 O;  1MPF A;  2GE4 A;  3AA0 A;  5DL8 A;  1ORM A;  3K19 A;  3QRA A;  4LSF A;  4AKR B;  4AYD C;  3PF1 A;  4O3W A;  5B5E O;  4FSO A;  4RJX A;  4FMS A;  1P4T A;  4N75 A;  4RJW A;  3VY8 X;  5PRN A;  4AYN A;  4AZL A;  4C00 A;  1QJP A;  2R4N A;  1OPF A;  1IZN A;  2XE2 A;  1MM4 A;  1MM5 A;  3AAA B;  1E54 A;  4FT6 A;  4LSE A;  5KAI O;  3HWB A;  2R4L A;  3LK4 1;  4FOZ A;  2W80 C;  2ERV A;  2XE1 A;  4FRX A;  4FUV A;  5DL7 A;  4FQE A;  1ZHT A;  2F1C X;  4O3Z A;  4B61 A;  3JTY A;  3SY9 A;  4K3B A;  2Y7S A;  4O4U A;  1ZHY A;  2KXP B;  3A2S X;  5GV0 A;  3SZD A;  4FES A;  4FZN A;  2N2M A;  4AKM A;  3NJT A;  4GF4 A;  4AYI D;  2JQY A;  4E1T A;  4O4X A;  4RLB A;  2MNH A;  1BT9 A;  5TIS O;  3HOE A;  3PQU A;  4D5U A;  4XNK A;  6PRN A;  4K3C A;  3A0H O;  1Q9F A;  1ZHX A;  3SZV A;  2Y0L A;  5ADX K;  3VY9 X;  2R4P A;  4N58 A;  4PJ0 O;  4PR7 A;  3VZT X;  4C69 X;  3BRY A;  1T1L A;  2JMM A;  4GCS A;  2F1T A;  4GCQ A;  2XE5 A;  4KR8 A;  2KXP A;  4C4V A;  4D65 A;  4D64 A;  4N74 A;  1THQ A; 
#chains in the Genus database with same CATH homology
 2XMX A;  4FZL A;  3UAQ A;  2OMF A;  3AA7 A;  3LK3 B;  8PRN A;  5EE2 A;  1GFP A;  4O3Y A;  2YNK A;  2ZFG A;  1Q9G A;  4GHB A;  4RLC A;  1H6S 1;  3VE2 A;  4KR4 A;  1HXX A;  4BUM X;  2XTR A;  3AA7 B;  3UU2 A;  1GFQ A;  3POU A;  3KVD D;  1HXT A;  2M06 A;  2N2L A;  3LK3 A;  2Y0H A;  5DL6 A;  4AYE C;  2PRN A;  2XG6 A;  4AYM C;  2W81 C;  2LHF A;  2M07 A;  3T24 A;  1ZHW A;  1G90 A;  4LSH A;  3AA1 B;  4RL9 A;  4E1S A;  2FGQ X;  4Z3T A;  2ZLD A;  3EMN X;  4PUX A;  2KC0 A;  2FGR A;  2YPV A;  3HOL A;  5T5F A;  3NSG A;  4JFB A;  1GFN A;  3AAE B;  4KRA A;  3SY7 A;  4N59 A;  4XNL A;  7PRN A;  3QRC A;  3T0S A;  1GFM A;  2XE3 A;  3VZW X;  3T20 A;  4AUI A;  1ZHZ A;  3O0E A;  1QJ9 A;  4O49 A;  2KDY A;  5ADX L;  3RBH A;  3VZU X;  4QQ1 A;  1GFO A;  1HXU A;  1YS5 A;  3AA1 A;  3LK2 A;  4LSI A;  1QJ8 A;  1OSM A;  3LK4 2;  4U9C A;  3DA4 A;  3GP6 A;  3SYS A;  2QTK A;  3POR A;  5D5D A;  3V8U A;  3VE1 A;  3UPG A;  3AAE A;  1PHO A;  4O3X B;  3G7G A;  3DA3 A;  1BXW A;  3PQS A;  2XTQ A;  2POR A;  4FZM A;  2O4V A;  3TZG A;  5AFU K;  2Y0K A;  2KZ7 A;  2K0L A;  3POX A;  3AA0 B;  3LK2 B;  5DL5 A;  6PRN A;  4GCP A;  4FRT A;  3AA6 A;  3POQ A;  4FSP A;  2ODJ A;  3WI5 A;  5AFU L;  5FVN A;  2LFU A;  5G26 A;  3C5O A;  4AFK A;  4JCH A;  3WI4 A;  2F1V A;  3PRN A;  4AKR A;  4F4B A;  1IZN B;  1BH3 A;  1PRN A;  2MHL A;  3FYX A;  4G75 A;  3HW9 A;  3SYB A;  2J1N A;  2KZ7 B;  4G76 A;  2J4U P;  3AAA A;  2X27 X;  3AA6 B;  2Y2X A;  5IYU A;  2K4T A;  1MPF A;  2GE4 A;  3AA0 A;  5DL8 A;  1ORM A;  3K19 A;  3QRA A;  4LSF A;  4AKR B;  4AYD C;  4O3W A;  4FSO A;  4RJX A;  4FMS A;  1P4T A;  4RJW A;  3VY8 X;  4AZL A;  5PRN A;  4AYN A;  1QJP A;  1OPF A;  1IZN A;  2XE2 A;  1MM4 A;  1MM5 A;  3AAA B;  1E54 A;  4FT6 A;  4LSE A;  3HWB A;  3LK4 1;  4FOZ A;  2W80 C;  2ERV A;  2XE1 A;  4FRX A;  4FUV A;  5DL7 A;  1ZHT A;  4O3Z A;  4B61 A;  3JTY A;  3SY9 A;  2Y7S A;  4O4U A;  1ZHY A;  2KXP B;  3A2S X;  5GV0 A;  3SZD A;  4FES A;  4FZN A;  2N2M A;  4AKM A;  4GF4 A;  4AYI D;  4E1T A;  4O4X A;  4RLB A;  2MNH A;  1BT9 A;  3HOE A;  3PQU A;  4D5U A;  4XNK A;  1Q9F A;  1ZHX A;  3SZV A;  2Y0L A;  5ADX K;  3VY9 X;  3VZT X;  4N58 A;  4C69 X;  4GCQ A;  2JMM A;  4GCS A;  2F1T A;  4KR8 A;  2XE5 A;  4D65 A;  2KXP A;  4D64 A;  5JDP A;  1THQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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