2Y0KA

Crystal structure of pseudomonas aeruginosa opdo
Total Genus 96
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
388
structure length
364
Chain Sequence
HHHHDLVEDSHASLELRNFYFNRDFRGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords PYROGLUTATMATE PORIN OPDO
publication title Crystal Structure of Pseudomonas Aeruginosa Opdo
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 96
structure length 364
sequence length 388
ec nomenclature
pdb deposition date 2010-12-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2y0kA01
3T0SA 4KR8A 2XE5A 3NSGA 3VY8X 2J1NA 3SZDA 4FRXA 2Y0KA 1BH3A 4FT6A 4FSPA 4BUMX 3FYXA 3JTYA 1OSMA 4RJXA 3SYBA 3POUA 4LSHA 4RJWA 3WI5A 3SYSA 1H6S1 4C69X 2O4VA 3A2SX 4LSEA 2ZFGA 2ODJA 2Y0LA 2OMFA 5DL5A 3T24A 5PRNA 2FGRA 4GCQA 2Y2XA 1GFQA 1GFPA 5DL6A 3VZTX 4JFBA 2XE2A 1PRNA 3T20A 3VZWX 3SY7A 4FRTA 3PORA 2XE3A 4LSIA 5DL7A 1OPFA 5DL8A 4KR4A 2PORA 2Y0HA 3POQA 4D65A 7PRNA 4D64A 3POXA 3HW9A 3SZVA 1GFMA 4GCSA 4KRAA 3VZUX 2PRNA 2FGQX 2QTKA 3EMNX 3UPGA 4FOZA 2K4TA 3UU2A 4AUIA 3PRNA 2J4UP 3O0EA 1HXXA 4LSFA 1BT9A 2XG6A 1HXTA 4FSOA 3WI4A 2XE1A 1MPFA 1GFOA 3HWBA 4GCPA 4D5UA 2ZLDA 3VY9X 4FMSA 5FVNA 1E54A 3K19A 1GFNA 8PRNA 6PRNA 1PHOA 5JDPA 1HXUA 3SY9A
chains in the Genus database with same CATH superfamily
4PR7A 2KXPA 4UB8O 4AKMA 3T0SA 2W81C 4KR8A 5GV0A 2F1TA 2W80C 2XE5A 1BXWA 1MM4A 2R89A 1IZNB 3NSGA 3VY8X 2JMMA 2J1NA 3AAEB 3SZDA 4FRXA 1ZHWA 2MHLA 3DWNA 1ZHZA 2Y0KA 2M06A 4C4VB 4O3WA 4RLCA 3AAAA 3GP6A 3SY9A 5G26A 5ADXK 3G7GA 3LK3B 4O3ZA 1BH3A 4FT6A 4FSPA 4AYMC 4BUMX 5ADXL 2IWVA 2R8AA 4AYNA 3FYXA 3AA1A 2M07A 2XTRA 1OSMA 3JTYA 3LK41 4GHBA 4FESA 2YPVA 4RJXA 5TISO 3POUA 3SYBA 4LSHA 4O4UA 3AA7A 3C5OA 3PGRA 4AZLA 2KXPB 4RLBA 3AA6A 4PUXA 4F4BA 2R4OA 4RJWA 2F1VA 1Q9GA 3SYSA 3WI5A 3KZIO 1H6S1 2KDYA 4C69X 2O4VA 1P4TA 3A2SX 4FZLA 4QQ1A 2WJRA 2R4NA 2AXTO 1ZHXA 3A0HO 4G76A 1QJPA 2MNHA 5H2FO 4LSEA 3AAAB 2ZFGA 2ODJA 2Y0LA 2OMFA 5DL5A 3T24A 5PRNA 4IL6O 2FGRA 4GCQA 2Y2XA 3PGSA 3A0BO 3PQUA 2LHFA 3QRCA 4AYDC 3QRAA 1MM5A 3AA1B 2WJQA 4N75A 4CTDA 1GFQA 1YS5A 1Q9FA 5E79O 3AA7B 4AKRB 1GFPA 2KZ7A 3AA6B 4O49A 2LFUA 5DL6A 2KC0A 2R4PA 3DZMA 5D5DA 2F1CX 1ZHYA 3BRYA 1THQA 4N58A 3NJTA 4FZNA 3HOEA 5G3AA 3RBHA 3VZTX 5B66O 3DA4A 2XE2A 4JFBA 3WU2O 4PJ0O 4RL9A 1PRNA 2YNKA 3PGUA 3T20A 3VZWX 3SY7A 2JQYA 4FRTA 2R88A 2X9KA 3JCUO 4FZMA 5KAIO 2N2MA 3PORA 2XE3A 1T16A 4JCHA 5GTHO 3BRZA 2GE4A 3DA3A 4LSIA 4O3YA 1OPFA 5DL7A 2KZ7B 5DL8A 2R4LA 3PF1A 5B5EO 5GTIO 4KR4A 2K0LA 2PORA 2Y0HA 4B61A 2N2LA 3POQA 4FQEA 4D65A 3V8UA 7PRNA 3LK3A 4D64A 4G75A 1QJ9A 4K3BA 2IWWA 3POXA 3HW9A 3SZVA 1GFMA 4GCSA 4KRAA 4E1TA 3VZUX 4AYID 2PRNA 2FGQX 3LK2A 4E1SA 2QTKA 1QJ8A 3LK42 3EMNX 1ORMA 4FUVA 3UPGA 4FOZA 2K4TA 3TZGA 2X27X 3DWOX 3UU2A 3AA0A 4U9CA 3VE1A 1T1LA 3VE2A 4Z3TA 5IYUA 4O3XB 5G39A 4AUIA 1G90A 5KAFO 3PRNA 2WVPA 2J4UP 3O0EA 1HXXA 4LSFA 1BT9A 2XG6A 4GF4A 4AYEC 5AFUK 1HXTA 1ZHTA 4FSOA 3WI4A 2XE1A 1MPFA 1GFOA 1IZNA 2XMXA 3HWBA 4GCPA 4K3CA 5G38A 3AAEA 3PQSA 4UB6O 4N59A 4AFKA 4D5UA 5AFUL 2ZLDA 3VY9X 1S5LO 4O4XA 4FMSA 4C4VA 2Y7SA 5FVNA 1E54A 4N74A 3LK2B 3HOLA 3KVDD 3K19A 1GFNA 3UAQA 8PRNA 4XNLA 4AKRA 6PRNA 5T5FA 1PHOA 4XNKA 2XTQA 4C00A 5JDPA 3AA0B 3BS0A 5EE2A 1HXUA 2ERVA
chains in the Genus database with same CATH topology
2KXPA 4AKMA 3T0SA 2W81C 4KR8A 5GV0A 2F1TA 2W80C 2XE5A 1BXWA 1MM4A 1IZNB 3NSGA 3VY8X 2JMMA 2J1NA 3AAEB 3SZDA 4FRXA 1ZHWA 2MHLA 1ZHZA 2Y0KA 2M06A 4O3WA 4RLCA 3AAAA 3GP6A 3SY9A 5G26A 5ADXK 3G7GA 3LK3B 4O3ZA 1BH3A 4FT6A 4FSPA 4AYMC 4BUMX 5ADXL 4AYNA 3FYXA 3AA1A 2M07A 2XTRA 1OSMA 3JTYA 3LK41 4GHBA 4FESA 2YPVA 4RJXA 3SYBA 3POUA 4LSHA 4O4UA 3AA7A 3C5OA 2KXPB 4RLBA 3AA6A 4PUXA 4F4BA 4RJWA 2F1VA 1Q9GA 3SYSA 3WI5A 1H6S1 2KDYA 4C69X 2O4VA 1P4TA 3A2SX 4FZLA 4QQ1A 1ZHXA 4G76A 1QJPA 2MNHA 4LSEA 3AAAB 2ZFGA 2ODJA 2Y0LA 2OMFA 5DL5A 3T24A 5PRNA 2FGRA 4GCQA 2Y2XA 3PQUA 2LHFA 3QRCA 4AYDC 3QRAA 1MM5A 3AA1B 1GFQA 1YS5A 1Q9FA 3AA7B 4AKRB 1GFPA 2KZ7A 3AA6B 4O49A 2LFUA 5DL6A 2KC0A 5D5DA 1ZHYA 4N58A 1THQA 4FZNA 3HOEA 3RBHA 3VZTX 3DA4A 2XE2A 4JFBA 4RL9A 1PRNA 2YNKA 3T20A 3VZWX 3SY7A 4FRTA 4FZMA 2N2MA 3PORA 2XE3A 4JCHA 3DA3A 2GE4A 4LSIA 4O3YA 1OPFA 5DL7A 2KZ7B 5DL8A 4KR4A 2K0LA 2PORA 2Y0HA 4B61A 2N2LA 3POQA 4D65A 3V8UA 7PRNA 3LK3A 4D64A 4G75A 1QJ9A 3POXA 3HW9A 3SZVA 1GFMA 4GCSA 4KRAA 4E1TA 3VZUX 4AYID 2PRNA 2FGQX 3LK2A 4E1SA 2QTKA 1QJ8A 3LK42 3EMNX 1ORMA 4FUVA 3UPGA 4FOZA 2K4TA 3TZGA 2X27X 3VE1A 3UU2A 3AA0A 4U9CA 4Z3TA 3VE2A 5IYUA 4O3XB 4AUIA 1G90A 3PRNA 2J4UP 3O0EA 1HXXA 4LSFA 1BT9A 2XG6A 4GF4A 4AYEC 5AFUK 1HXTA 1ZHTA 4FSOA 3WI4A 2XE1A 1MPFA 1GFOA 1IZNA 2XMXA 3HWBA 4GCPA 4AZLA 3AAEA 3PQSA 5AFUL 4N59A 4AFKA 4D5UA 2ZLDA 3VY9X 4O4XA 4FMSA 2Y7SA 5FVNA 1E54A 3LK2B 3HOLA 3KVDD 3K19A 1GFNA 3UAQA 8PRNA 4XNLA 4AKRA 6PRNA 5T5FA 1PHOA 4XNKA 2XTQA 5JDPA 3AA0B 5EE2A 1HXUA 2ERVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T0S A;  4KR8 A;  2XE5 A;  3NSG A;  3VY8 X;  2J1N A;  3SZD A;  4FRX A;  2Y0K A;  1BH3 A;  4FT6 A;  4FSP A;  4BUM X;  3FYX A;  3JTY A;  1OSM A;  4RJX A;  3SYB A;  3POU A;  4LSH A;  4RJW A;  3WI5 A;  3SYS A;  1H6S 1;  4C69 X;  2O4V A;  3A2S X;  4LSE A;  2ZFG A;  2ODJ A;  2Y0L A;  2OMF A;  5DL5 A;  3T24 A;  5PRN A;  2FGR A;  4GCQ A;  2Y2X A;  1GFQ A;  1GFP A;  5DL6 A;  3VZT X;  4JFB A;  2XE2 A;  1PRN A;  3T20 A;  3VZW X;  3SY7 A;  4FRT A;  3POR A;  2XE3 A;  4LSI A;  5DL7 A;  1OPF A;  5DL8 A;  4KR4 A;  2POR A;  2Y0H A;  3POQ A;  4D65 A;  7PRN A;  4D64 A;  3POX A;  3HW9 A;  3SZV A;  1GFM A;  4GCS A;  4KRA A;  3VZU X;  2PRN A;  2FGQ X;  2QTK A;  3EMN X;  3UPG A;  4FOZ A;  2K4T A;  3UU2 A;  4AUI A;  3PRN A;  2J4U P;  3O0E A;  1HXX A;  4LSF A;  1BT9 A;  2XG6 A;  1HXT A;  4FSO A;  3WI4 A;  2XE1 A;  1MPF A;  1GFO A;  3HWB A;  4GCP A;  4D5U A;  2ZLD A;  3VY9 X;  4FMS A;  5FVN A;  1E54 A;  3K19 A;  1GFN A;  8PRN A;  6PRN A;  1PHO A;  5JDP A;  1HXU A;  3SY9 A; 
#chains in the Genus database with same CATH topology
 4PR7 A;  2KXP A;  4UB8 O;  4AKM A;  3T0S A;  2W81 C;  4KR8 A;  5GV0 A;  2F1T A;  2W80 C;  2XE5 A;  1BXW A;  1MM4 A;  2R89 A;  1IZN B;  3NSG A;  3VY8 X;  2JMM A;  2J1N A;  3AAE B;  3SZD A;  4FRX A;  1ZHW A;  2MHL A;  3DWN A;  1ZHZ A;  2Y0K A;  2M06 A;  4C4V B;  4O3W A;  4RLC A;  3AAA A;  3GP6 A;  3SY9 A;  5G26 A;  5ADX K;  3G7G A;  3LK3 B;  4O3Z A;  1BH3 A;  4FT6 A;  4FSP A;  4AYM C;  4BUM X;  5ADX L;  2IWV A;  2R8A A;  4AYN A;  3FYX A;  3AA1 A;  2M07 A;  2XTR A;  1OSM A;  3JTY A;  3LK4 1;  4GHB A;  4FES A;  2YPV A;  4RJX A;  5TIS O;  3POU A;  3SYB A;  4LSH A;  4O4U A;  3AA7 A;  3C5O A;  3PGR A;  4AZL A;  2KXP B;  4RLB A;  3AA6 A;  4PUX A;  4F4B A;  2R4O A;  4RJW A;  2F1V A;  1Q9G A;  3SYS A;  3WI5 A;  3KZI O;  1H6S 1;  2KDY A;  4C69 X;  2O4V A;  1P4T A;  3A2S X;  4FZL A;  4QQ1 A;  2WJR A;  2R4N A;  2AXT O;  1ZHX A;  3A0H O;  4G76 A;  1QJP A;  2MNH A;  5H2F O;  4LSE A;  3AAA B;  2ZFG A;  2ODJ A;  2Y0L A;  2OMF A;  5DL5 A;  3T24 A;  5PRN A;  4IL6 O;  2FGR A;  4GCQ A;  2Y2X A;  3PGS A;  3A0B O;  3PQU A;  2LHF A;  3QRC A;  4AYD C;  3QRA A;  1MM5 A;  3AA1 B;  2WJQ A;  4N75 A;  4CTD A;  1GFQ A;  1YS5 A;  1Q9F A;  5E79 O;  3AA7 B;  4AKR B;  1GFP A;  2KZ7 A;  3AA6 B;  4O49 A;  2LFU A;  5DL6 A;  2KC0 A;  2R4P A;  3DZM A;  5D5D A;  2F1C X;  1ZHY A;  3BRY A;  1THQ A;  4N58 A;  3NJT A;  4FZN A;  3HOE A;  5G3A A;  3RBH A;  3VZT X;  5B66 O;  3DA4 A;  2XE2 A;  4JFB A;  3WU2 O;  4PJ0 O;  4RL9 A;  1PRN A;  2YNK A;  3PGU A;  3T20 A;  3VZW X;  3SY7 A;  2JQY A;  4FRT A;  2R88 A;  2X9K A;  3JCU O;  4FZM A;  5KAI O;  2N2M A;  3POR A;  2XE3 A;  1T16 A;  4JCH A;  5GTH O;  3BRZ A;  2GE4 A;  3DA3 A;  4LSI A;  4O3Y A;  1OPF A;  5DL7 A;  2KZ7 B;  5DL8 A;  2R4L A;  3PF1 A;  5B5E O;  5GTI O;  4KR4 A;  2K0L A;  2POR A;  2Y0H A;  4B61 A;  2N2L A;  3POQ A;  4FQE A;  4D65 A;  3V8U A;  7PRN A;  3LK3 A;  4D64 A;  4G75 A;  1QJ9 A;  4K3B A;  2IWW A;  3POX A;  3HW9 A;  3SZV A;  1GFM A;  4GCS A;  4KRA A;  4E1T A;  3VZU X;  4AYI D;  2PRN A;  2FGQ X;  3LK2 A;  4E1S A;  2QTK A;  1QJ8 A;  3LK4 2;  3EMN X;  1ORM A;  4FUV A;  3UPG A;  4FOZ A;  2K4T A;  3TZG A;  2X27 X;  3DWO X;  3UU2 A;  3AA0 A;  4U9C A;  3VE1 A;  1T1L A;  3VE2 A;  4Z3T A;  5IYU A;  4O3X B;  5G39 A;  4AUI A;  1G90 A;  5KAF O;  3PRN A;  2WVP A;  2J4U P;  3O0E A;  1HXX A;  4LSF A;  1BT9 A;  2XG6 A;  4GF4 A;  4AYE C;  5AFU K;  1HXT A;  1ZHT A;  4FSO A;  3WI4 A;  2XE1 A;  1MPF A;  1GFO A;  1IZN A;  2XMX A;  3HWB A;  4GCP A;  4K3C A;  5G38 A;  3AAE A;  3PQS A;  4UB6 O;  4N59 A;  4AFK A;  4D5U A;  5AFU L;  2ZLD A;  3VY9 X;  1S5L O;  4O4X A;  4FMS A;  4C4V A;  2Y7S A;  5FVN A;  1E54 A;  4N74 A;  3LK2 B;  3HOL A;  3KVD D;  3K19 A;  1GFN A;  3UAQ A;  8PRN A;  4XNL A;  4AKR A;  6PRN A;  5T5F A;  1PHO A;  4XNK A;  2XTQ A;  4C00 A;  5JDP A;  3AA0 B;  3BS0 A;  5EE2 A;  1HXU A;  2ERV A; 
#chains in the Genus database with same CATH homology
 2KXP A;  4AKM A;  3T0S A;  2W81 C;  4KR8 A;  5GV0 A;  2F1T A;  2W80 C;  2XE5 A;  1BXW A;  1MM4 A;  1IZN B;  3NSG A;  3VY8 X;  2JMM A;  2J1N A;  3AAE B;  3SZD A;  4FRX A;  1ZHW A;  2MHL A;  1ZHZ A;  2Y0K A;  2M06 A;  4O3W A;  4RLC A;  3AAA A;  3GP6 A;  3SY9 A;  5G26 A;  5ADX K;  3G7G A;  3LK3 B;  4O3Z A;  1BH3 A;  4FT6 A;  4FSP A;  4AYM C;  4BUM X;  5ADX L;  4AYN A;  3FYX A;  3AA1 A;  2M07 A;  2XTR A;  1OSM A;  3JTY A;  3LK4 1;  4GHB A;  4FES A;  2YPV A;  4RJX A;  3SYB A;  3POU A;  4LSH A;  4O4U A;  3AA7 A;  3C5O A;  2KXP B;  4RLB A;  3AA6 A;  4PUX A;  4F4B A;  4RJW A;  2F1V A;  1Q9G A;  3SYS A;  3WI5 A;  1H6S 1;  2KDY A;  4C69 X;  2O4V A;  1P4T A;  3A2S X;  4FZL A;  4QQ1 A;  1ZHX A;  4G76 A;  1QJP A;  2MNH A;  4LSE A;  3AAA B;  2ZFG A;  2ODJ A;  2Y0L A;  2OMF A;  5DL5 A;  3T24 A;  5PRN A;  2FGR A;  4GCQ A;  2Y2X A;  3PQU A;  2LHF A;  3QRC A;  4AYD C;  3QRA A;  1MM5 A;  3AA1 B;  1GFQ A;  1YS5 A;  1Q9F A;  3AA7 B;  4AKR B;  1GFP A;  2KZ7 A;  3AA6 B;  4O49 A;  2LFU A;  5DL6 A;  2KC0 A;  5D5D A;  1ZHY A;  4N58 A;  1THQ A;  4FZN A;  3HOE A;  3RBH A;  3VZT X;  3DA4 A;  2XE2 A;  4JFB A;  4RL9 A;  1PRN A;  2YNK A;  3T20 A;  3VZW X;  3SY7 A;  4FRT A;  4FZM A;  2N2M A;  3POR A;  2XE3 A;  4JCH A;  3DA3 A;  2GE4 A;  4LSI A;  4O3Y A;  1OPF A;  5DL7 A;  2KZ7 B;  5DL8 A;  4KR4 A;  2K0L A;  2POR A;  2Y0H A;  4B61 A;  2N2L A;  3POQ A;  4D65 A;  3V8U A;  7PRN A;  3LK3 A;  4D64 A;  4G75 A;  1QJ9 A;  3POX A;  3HW9 A;  3SZV A;  1GFM A;  4GCS A;  4KRA A;  4E1T A;  3VZU X;  4AYI D;  2PRN A;  2FGQ X;  3LK2 A;  4E1S A;  2QTK A;  1QJ8 A;  3LK4 2;  3EMN X;  1ORM A;  4FUV A;  3UPG A;  4FOZ A;  2K4T A;  3TZG A;  2X27 X;  3VE1 A;  3UU2 A;  3AA0 A;  4U9C A;  4Z3T A;  3VE2 A;  5IYU A;  4O3X B;  4AUI A;  1G90 A;  3PRN A;  2J4U P;  3O0E A;  1HXX A;  4LSF A;  1BT9 A;  2XG6 A;  4GF4 A;  4AYE C;  5AFU K;  1HXT A;  1ZHT A;  4FSO A;  3WI4 A;  2XE1 A;  1MPF A;  1GFO A;  1IZN A;  2XMX A;  3HWB A;  4GCP A;  4AZL A;  3AAE A;  3PQS A;  5AFU L;  4N59 A;  4AFK A;  4D5U A;  2ZLD A;  3VY9 X;  4O4X A;  4FMS A;  2Y7S A;  5FVN A;  1E54 A;  3LK2 B;  3HOL A;  3KVD D;  3K19 A;  1GFN A;  3UAQ A;  8PRN A;  4XNL A;  4AKR A;  6PRN A;  5T5F A;  1PHO A;  4XNK A;  2XTQ A;  5JDP A;  3AA0 B;  5EE2 A;  1HXU A;  2ERV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...