4FRXA

Crystal structure of pseudomonas aeruginosa occk8 (opre)
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
431
structure length
399
Chain Sequence
AGFIEDSKASLTLRNFYINTDNRSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRLGTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGDQDENRLIVSYTLPLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Anaerobically-induced outer membrane porin OprE
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
total genus 121
structure length 399
sequence length 431
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4frxA01
3VY8X 3SZDA 1E54A 3O0EA 2Y0LA 4FOZA 3FYXA 5FVNA 2O4VA 1OPFA 2OMFA 5PRNA 4C69X 3SY7A 1GFOA 4RJXA 4LSIA 1H6S1 4GCSA 4BUMX 2QTKA 1BT9A 3SZVA 1PHOA 2ZFGA 4LSHA 1HXTA 1BH3A 2XE5A 2FGRA 4LSFA 4FRTA 4LSEA 3T20A 2XE2A 3WI4A 3EMNX 4JFBA 2PRNA 5DL8A 3T0SA 2XE3A 4FMSA 3VZUX 1PRNA 4KR4A 3T24A 3JTYA 3WI5A 4RJWA 1HXXA 3SYSA 3SYBA 8PRNA 5JDPA 3NSGA 4GCQA 2J4UP 3VY9X 2ZLDA 7PRNA 3PRNA 3UU2A 3VZTX 4FRXA 3POXA 6PRNA 3POQA 2Y2XA 2Y0HA 4FSPA 2K4TA 3VZWX 2XE1A 2XG6A 4KRAA 4FSOA 1MPFA 2Y0KA 1GFMA 3A2SX 3PORA 4GCPA 5DL7A 3UPGA 5DL6A 2ODJA 4KR8A 3SY9A 1GFNA 3HWBA 1GFPA 1GFQA 4D65A 2FGQX 2J1NA 4AUIA 3HW9A 1HXUA 3POUA 4FT6A 4D5UA 2PORA 3K19A 5DL5A 4D64A 1OSMA
chains in the Genus database with same CATH superfamily
2YPVA 4FESA 1ZHXA 3SZDA 3VY8X 2K0LA 3KZIO 1E54A 2Y7SA 4O3YA 3O0EA 5G26A 2Y0LA 3QRAA 4Z3TA 4U9CA 5AFUL 2R88A 4FOZA 2N2LA 2MHLA 3FYXA 1BXWA 3KVDD 5FVNA 3TZGA 2O4VA 2IWVA 3V8UA 3WU2O 4F4BA 1G90A 4B61A 1OPFA 2W80C 3BS0A 2OMFA 3AA1A 5PRNA 4AKRB 1MM4A 1S5LO 4C69X 3SY7A 1MM5A 3PF1A 5AFUK 2N2MA 1GFOA 3HOEA 2LHFA 4AYNA 3BRZA 5GTHO 1IZNB 3LK2B 4O4XA 2IWWA 4RJXA 3PGSA 5B5EO 4LSIA 3AAEB 1H6S1 2KXPA 1ZHZA 3AA0A 3AA7A 3HOLA 4GCSA 2QTKA 4BUMX 1BT9A 2JMMA 4AYMC 1YS5A 2M06A 3SZVA 3AA6A 2X27X 1PHOA 2W81C 2ZFGA 4O3WA 4LSHA 1HXTA 1BH3A 2XMXA 3AAAB 3C5OA 4UB8O 5H2FO 3LK41 1Q9GA 5IYUA 1ORMA 1ZHTA 2XE5A 2XTRA 3LK3B 2FGRA 5D5DA 4LSFA 3UAQA 4FRTA 4LSEA 2MNHA 2GE4A 5EE2A 3T20A 3DA3A 1QJ8A 2XE2A 5G3AA 3WI4A 3LK42 3EMNX 2LFUA 4FZMA 3NJTA 4JFBA 5TISO 3RBHA 2PRNA 4AKMA 2WVPA 5DL8A 2R4PA 3BRYA 4K3CA 2ERVA 4O3ZA 2XE3A 3T0SA 2R4OA 4AYEC 4FMSA 3T24A 1THQA 4PR7A 3VZUX 4C4VA 3DA4A 3A0HO 2JQYA 4FUVA 1PRNA 3QRCA 4KR4A 5G39A 5GTIO 4JCHA 2R89A 2X9KA 3AA1B 4GHBA 4RLCA 3JTYA 5E79O 2M07A 4FZNA 3VE1A 4RJWA 2KDYA 3WI5A 1HXXA 4N74A 3SYSA 3SYBA 4PJ0O 5KAIO 4AYDC 2KZ7A 4CTDA 8PRNA 5JDPA 3NSGA 4GCQA 2F1CX 2J4UP 3VY9X 4E1SA 2ZLDA 7PRNA 3PRNA 3UU2A 3VZTX 4FRXA 3POXA 3JCUO 2KXPB 3AA0B 6PRNA 3AA7B 1QJ9A 2R8AA 2KC0A 2Y2XA 3POQA 5GV0A 2Y0HA 3PQSA 3A0BO 4AYID 3AA6B 4FSPA 2K4TA 3VZWX 3VE2A 4GF4A 1T1LA 5G38A 4RL9A 3DWOX 2XE1A 4XNLA 1Q9FA 2XG6A 4AKRA 4KRAA 4FSOA 1MPFA 2Y0KA 4N59A 1GFMA 4K3BA 5B66O 2WJQA 3A2SX 4O3XB 3PORA 4GCPA 1IZNA 3LK2A 5DL7A 3GP6A 4PUXA 4C00A 5DL6A 5ADXK 3UPGA 4FQEA 4O4UA 4XNKA 4O49A 2ODJA 4KR8A 3AAEA 3PQUA 4N75A 4IL6O 2R4LA 1ZHWA 3G7GA 4G76A 2XTQA 3SY9A 4C4VB 1GFNA 4G75A 3DWNA 2F1VA 3HWBA 1GFPA 1GFQA 1ZHYA 4D65A 2FGQX 4RLBA 2J1NA 4AUIA 3HW9A 2WJRA 4QQ1A 3AAAA 5KAFO 1QJPA 4AZLA 2F1TA 1HXUA 3LK3A 3POUA 2KZ7B 4FT6A 4UB6O 4D5UA 3PGRA 2PORA 2R4NA 3DZMA 3K19A 2YNKA 3PGUA 4FZLA 2AXTO 1T16A 4N58A 5DL5A 4AFKA 1P4TA 4D64A 4E1TA 5ADXL 1OSMA 5T5FA
chains in the Genus database with same CATH topology
2YPVA 4FESA 1ZHXA 3SZDA 3VY8X 2K0LA 1E54A 2Y7SA 4O3YA 3O0EA 5G26A 2Y0LA 3QRAA 4Z3TA 4U9CA 5AFUL 4FOZA 2N2LA 2MHLA 3FYXA 1BXWA 3KVDD 5FVNA 3TZGA 2O4VA 3V8UA 4F4BA 1G90A 4B61A 1OPFA 2W80C 2OMFA 3AA1A 5PRNA 4AKRB 1MM4A 4C69X 3SY7A 1MM5A 5AFUK 2N2MA 1GFOA 3HOEA 2LHFA 4AYNA 1IZNB 3LK2B 4O4XA 4RJXA 4LSIA 3AAEB 1H6S1 2KXPA 1ZHZA 3AA0A 3AA7A 3HOLA 4GCSA 2QTKA 4BUMX 1BT9A 2JMMA 4AYMC 1YS5A 2M06A 3SZVA 3AA6A 2X27X 1PHOA 2W81C 2ZFGA 4O3WA 4LSHA 1HXTA 1BH3A 2XMXA 3AAAB 3C5OA 3LK41 1Q9GA 5IYUA 1ORMA 1ZHTA 2XE5A 2XTRA 3LK3B 2FGRA 5D5DA 4LSFA 3UAQA 4FRTA 4LSEA 2MNHA 2GE4A 5EE2A 3T20A 3DA3A 1QJ8A 2XE2A 3WI4A 3LK42 3EMNX 2LFUA 4FZMA 4JFBA 3RBHA 4AKMA 2PRNA 5DL8A 2ERVA 4O3ZA 2XE3A 3T0SA 4AYEC 4FMSA 1THQA 3VZUX 3DA4A 4FUVA 1PRNA 3QRCA 4KR4A 3T24A 4JCHA 4RLCA 3AA1B 4GHBA 3JTYA 2M07A 4FZNA 3VE1A 4RJWA 2KDYA 3WI5A 1HXXA 3SYSA 3SYBA 4AYDC 8PRNA 2KZ7A 5JDPA 3NSGA 4GCQA 2J4UP 3VY9X 4E1SA 2ZLDA 7PRNA 3PRNA 3UU2A 3VZTX 4FRXA 3POXA 2KXPB 3AA0B 6PRNA 3AA7B 1QJ9A 2KC0A 2Y2XA 3POQA 5GV0A 2Y0HA 3PQSA 4AYID 3AA6B 4FSPA 2K4TA 3VZWX 3VE2A 4GF4A 4RL9A 2XE1A 4XNLA 1Q9FA 2XG6A 4AKRA 4KRAA 4FSOA 1MPFA 2Y0KA 4N59A 1GFMA 3A2SX 4O3XB 3PORA 4GCPA 1IZNA 3LK2A 5DL7A 3GP6A 4PUXA 5ADXK 5DL6A 3UPGA 4O4UA 4XNKA 4O49A 2ODJA 4KR8A 3AAEA 3PQUA 3G7GA 1ZHWA 3SY9A 4G76A 2XTQA 1GFNA 4G75A 2F1VA 3HWBA 1GFPA 1GFQA 1ZHYA 4D65A 2FGQX 4RLBA 2J1NA 4AUIA 3HW9A 4QQ1A 3AAAA 1QJPA 4AZLA 2F1TA 1HXUA 3LK3A 3POUA 2KZ7B 4FT6A 4D5UA 2PORA 3K19A 2YNKA 4FZLA 4N58A 5DL5A 4AFKA 4E1TA 4D64A 1P4TA 5ADXL 1OSMA 5T5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VY8 X;  3SZD A;  1E54 A;  3O0E A;  2Y0L A;  4FOZ A;  3FYX A;  5FVN A;  2O4V A;  1OPF A;  2OMF A;  5PRN A;  4C69 X;  3SY7 A;  1GFO A;  4RJX A;  4LSI A;  1H6S 1;  4GCS A;  4BUM X;  2QTK A;  1BT9 A;  3SZV A;  1PHO A;  2ZFG A;  4LSH A;  1HXT A;  1BH3 A;  2XE5 A;  2FGR A;  4LSF A;  4FRT A;  4LSE A;  3T20 A;  2XE2 A;  3WI4 A;  3EMN X;  4JFB A;  2PRN A;  5DL8 A;  3T0S A;  2XE3 A;  4FMS A;  3VZU X;  1PRN A;  4KR4 A;  3T24 A;  3JTY A;  3WI5 A;  4RJW A;  1HXX A;  3SYS A;  3SYB A;  8PRN A;  5JDP A;  3NSG A;  4GCQ A;  2J4U P;  3VY9 X;  2ZLD A;  7PRN A;  3PRN A;  3UU2 A;  3VZT X;  4FRX A;  3POX A;  6PRN A;  3POQ A;  2Y2X A;  2Y0H A;  4FSP A;  2K4T A;  3VZW X;  2XE1 A;  2XG6 A;  4KRA A;  4FSO A;  1MPF A;  2Y0K A;  1GFM A;  3A2S X;  3POR A;  4GCP A;  5DL7 A;  3UPG A;  5DL6 A;  2ODJ A;  4KR8 A;  3SY9 A;  1GFN A;  3HWB A;  1GFP A;  1GFQ A;  4D65 A;  2FGQ X;  2J1N A;  4AUI A;  3HW9 A;  1HXU A;  3POU A;  4FT6 A;  4D5U A;  2POR A;  3K19 A;  5DL5 A;  4D64 A;  1OSM A; 
#chains in the Genus database with same CATH topology
 2YPV A;  4FES A;  1ZHX A;  3SZD A;  3VY8 X;  2K0L A;  3KZI O;  1E54 A;  2Y7S A;  4O3Y A;  3O0E A;  5G26 A;  2Y0L A;  3QRA A;  4Z3T A;  4U9C A;  5AFU L;  2R88 A;  4FOZ A;  2N2L A;  2MHL A;  3FYX A;  1BXW A;  3KVD D;  5FVN A;  3TZG A;  2O4V A;  2IWV A;  3V8U A;  3WU2 O;  4F4B A;  1G90 A;  4B61 A;  1OPF A;  2W80 C;  3BS0 A;  2OMF A;  3AA1 A;  5PRN A;  4AKR B;  1MM4 A;  1S5L O;  4C69 X;  3SY7 A;  1MM5 A;  3PF1 A;  5AFU K;  2N2M A;  1GFO A;  3HOE A;  2LHF A;  4AYN A;  3BRZ A;  5GTH O;  1IZN B;  3LK2 B;  4O4X A;  2IWW A;  4RJX A;  3PGS A;  5B5E O;  4LSI A;  3AAE B;  1H6S 1;  2KXP A;  1ZHZ A;  3AA0 A;  3AA7 A;  3HOL A;  4GCS A;  2QTK A;  4BUM X;  1BT9 A;  2JMM A;  4AYM C;  1YS5 A;  2M06 A;  3SZV A;  3AA6 A;  2X27 X;  1PHO A;  2W81 C;  2ZFG A;  4O3W A;  4LSH A;  1HXT A;  1BH3 A;  2XMX A;  3AAA B;  3C5O A;  4UB8 O;  5H2F O;  3LK4 1;  1Q9G A;  5IYU A;  1ORM A;  1ZHT A;  2XE5 A;  2XTR A;  3LK3 B;  2FGR A;  5D5D A;  4LSF A;  3UAQ A;  4FRT A;  4LSE A;  2MNH A;  2GE4 A;  5EE2 A;  3T20 A;  3DA3 A;  1QJ8 A;  2XE2 A;  5G3A A;  3WI4 A;  3LK4 2;  3EMN X;  2LFU A;  4FZM A;  3NJT A;  4JFB A;  5TIS O;  3RBH A;  2PRN A;  4AKM A;  2WVP A;  5DL8 A;  2R4P A;  3BRY A;  4K3C A;  2ERV A;  4O3Z A;  2XE3 A;  3T0S A;  2R4O A;  4AYE C;  4FMS A;  3T24 A;  1THQ A;  4PR7 A;  3VZU X;  4C4V A;  3DA4 A;  3A0H O;  2JQY A;  4FUV A;  1PRN A;  3QRC A;  4KR4 A;  5G39 A;  5GTI O;  4JCH A;  2R89 A;  2X9K A;  3AA1 B;  4GHB A;  4RLC A;  3JTY A;  5E79 O;  2M07 A;  4FZN A;  3VE1 A;  4RJW A;  2KDY A;  3WI5 A;  1HXX A;  4N74 A;  3SYS A;  3SYB A;  4PJ0 O;  5KAI O;  4AYD C;  2KZ7 A;  4CTD A;  8PRN A;  5JDP A;  3NSG A;  4GCQ A;  2F1C X;  2J4U P;  3VY9 X;  4E1S A;  2ZLD A;  7PRN A;  3PRN A;  3UU2 A;  3VZT X;  4FRX A;  3POX A;  3JCU O;  2KXP B;  3AA0 B;  6PRN A;  3AA7 B;  1QJ9 A;  2R8A A;  2KC0 A;  2Y2X A;  3POQ A;  5GV0 A;  2Y0H A;  3PQS A;  3A0B O;  4AYI D;  3AA6 B;  4FSP A;  2K4T A;  3VZW X;  3VE2 A;  4GF4 A;  1T1L A;  5G38 A;  4RL9 A;  3DWO X;  2XE1 A;  4XNL A;  1Q9F A;  2XG6 A;  4AKR A;  4KRA A;  4FSO A;  1MPF A;  2Y0K A;  4N59 A;  1GFM A;  4K3B A;  5B66 O;  2WJQ A;  3A2S X;  4O3X B;  3POR A;  4GCP A;  1IZN A;  3LK2 A;  5DL7 A;  3GP6 A;  4PUX A;  4C00 A;  5DL6 A;  5ADX K;  3UPG A;  4FQE A;  4O4U A;  4XNK A;  4O49 A;  2ODJ A;  4KR8 A;  3AAE A;  3PQU A;  4N75 A;  4IL6 O;  2R4L A;  1ZHW A;  3G7G A;  4G76 A;  2XTQ A;  3SY9 A;  4C4V B;  1GFN A;  4G75 A;  3DWN A;  2F1V A;  3HWB A;  1GFP A;  1GFQ A;  1ZHY A;  4D65 A;  2FGQ X;  4RLB A;  2J1N A;  4AUI A;  3HW9 A;  2WJR A;  4QQ1 A;  3AAA A;  5KAF O;  1QJP A;  4AZL A;  2F1T A;  1HXU A;  3LK3 A;  3POU A;  2KZ7 B;  4FT6 A;  4UB6 O;  4D5U A;  3PGR A;  2POR A;  2R4N A;  3DZM A;  3K19 A;  2YNK A;  3PGU A;  4FZL A;  2AXT O;  1T16 A;  4N58 A;  5DL5 A;  4AFK A;  1P4T A;  4D64 A;  4E1T A;  5ADX L;  1OSM A;  5T5F A; 
#chains in the Genus database with same CATH homology
 2YPV A;  4FES A;  1ZHX A;  3SZD A;  3VY8 X;  2K0L A;  1E54 A;  2Y7S A;  4O3Y A;  3O0E A;  5G26 A;  2Y0L A;  3QRA A;  4Z3T A;  4U9C A;  5AFU L;  4FOZ A;  2N2L A;  2MHL A;  3FYX A;  1BXW A;  3KVD D;  5FVN A;  3TZG A;  2O4V A;  3V8U A;  4F4B A;  1G90 A;  4B61 A;  1OPF A;  2W80 C;  2OMF A;  3AA1 A;  5PRN A;  4AKR B;  1MM4 A;  4C69 X;  3SY7 A;  1MM5 A;  5AFU K;  2N2M A;  1GFO A;  3HOE A;  2LHF A;  4AYN A;  1IZN B;  3LK2 B;  4O4X A;  4RJX A;  4LSI A;  3AAE B;  1H6S 1;  2KXP A;  1ZHZ A;  3AA0 A;  3AA7 A;  3HOL A;  4GCS A;  2QTK A;  4BUM X;  1BT9 A;  2JMM A;  4AYM C;  1YS5 A;  2M06 A;  3SZV A;  3AA6 A;  2X27 X;  1PHO A;  2W81 C;  2ZFG A;  4O3W A;  4LSH A;  1HXT A;  1BH3 A;  2XMX A;  3AAA B;  3C5O A;  3LK4 1;  1Q9G A;  5IYU A;  1ORM A;  1ZHT A;  2XE5 A;  2XTR A;  3LK3 B;  2FGR A;  5D5D A;  4LSF A;  3UAQ A;  4FRT A;  4LSE A;  2MNH A;  2GE4 A;  5EE2 A;  3T20 A;  3DA3 A;  1QJ8 A;  2XE2 A;  3WI4 A;  3LK4 2;  3EMN X;  2LFU A;  4FZM A;  4JFB A;  3RBH A;  4AKM A;  2PRN A;  5DL8 A;  2ERV A;  4O3Z A;  2XE3 A;  3T0S A;  4AYE C;  4FMS A;  1THQ A;  3VZU X;  3DA4 A;  4FUV A;  1PRN A;  3QRC A;  4KR4 A;  3T24 A;  4JCH A;  4RLC A;  3AA1 B;  4GHB A;  3JTY A;  2M07 A;  4FZN A;  3VE1 A;  4RJW A;  2KDY A;  3WI5 A;  1HXX A;  3SYS A;  3SYB A;  4AYD C;  8PRN A;  2KZ7 A;  5JDP A;  3NSG A;  4GCQ A;  2J4U P;  3VY9 X;  4E1S A;  2ZLD A;  7PRN A;  3PRN A;  3UU2 A;  3VZT X;  4FRX A;  3POX A;  2KXP B;  3AA0 B;  6PRN A;  3AA7 B;  1QJ9 A;  2KC0 A;  2Y2X A;  3POQ A;  5GV0 A;  2Y0H A;  3PQS A;  4AYI D;  3AA6 B;  4FSP A;  2K4T A;  3VZW X;  3VE2 A;  4GF4 A;  4RL9 A;  2XE1 A;  4XNL A;  1Q9F A;  2XG6 A;  4AKR A;  4KRA A;  4FSO A;  1MPF A;  2Y0K A;  4N59 A;  1GFM A;  3A2S X;  4O3X B;  3POR A;  4GCP A;  1IZN A;  3LK2 A;  5DL7 A;  3GP6 A;  4PUX A;  5ADX K;  5DL6 A;  3UPG A;  4O4U A;  4XNK A;  4O49 A;  2ODJ A;  4KR8 A;  3AAE A;  3PQU A;  3G7G A;  1ZHW A;  3SY9 A;  4G76 A;  2XTQ A;  1GFN A;  4G75 A;  2F1V A;  3HWB A;  1GFP A;  1GFQ A;  1ZHY A;  4D65 A;  2FGQ X;  4RLB A;  2J1N A;  4AUI A;  3HW9 A;  4QQ1 A;  3AAA A;  1QJP A;  4AZL A;  2F1T A;  1HXU A;  3LK3 A;  3POU A;  2KZ7 B;  4FT6 A;  4D5U A;  2POR A;  3K19 A;  2YNK A;  4FZL A;  4N58 A;  5DL5 A;  4AFK A;  4E1T A;  4D64 A;  1P4T A;  5ADX L;  1OSM A;  5T5F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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