4FRXA

Crystal structure of pseudomonas aeruginosa occk8 (opre)
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
431
structure length
399
Chain Sequence
AGFIEDSKASLTLRNFYINTDNRSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRLGTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGDQDENRLIVSYTLPLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Anaerobically-induced outer membrane porin OprE
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
total genus 121
structure length 399
sequence length 431
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4frxA01
4KRAA 1GFNA 2XE3A 2XE2A 3UU2A 3A2SX 3PORA 4FSPA 2ZLDA 4FOZA 4RJXA 6PRNA 2Y0LA 4JFBA 2Y0KA 3O0EA 1BH3A 1GFMA 2PORA 5FVNA 3FYXA 3SZDA 3EMNX 4LSIA 8PRNA 3T20A 7PRNA 4LSEA 3VZTX 4GCSA 3SY9A 1MPFA 2FGRA 2K4TA 3VY8X 3POUA 5DL7A 3SYSA 3JTYA 5DL5A 3T0SA 3T24A 2XG6A 1H6S1 3K19A 4LSFA 4FRTA 1GFOA 3POXA 4AUIA 2O4VA 3HWBA 1GFQA 2ZFGA 3WI4A 2XE5A 3VZWX 2FGQX 1HXTA 2J1NA 1OSMA 2PRNA 1BT9A 4LSHA 4C69X 1GFPA 2OMFA 5DL8A 2QTKA 1OPFA 1E54A 3HW9A 4D65A 3POQA 1HXXA 5JDPA 4GCPA 4D64A 4BUMX 3SZVA 4FT6A 1HXUA 3SYBA 2Y0HA 3PRNA 2ODJA 4RJWA 3SY7A 5DL6A 4FMSA 3WI5A 4KR8A 1PHOA 4GCQA 5PRNA 4D5UA 3NSGA 4FRXA 3VY9X 3UPGA 3VZUX 2J4UP 1PRNA 4KR4A 2XE1A 2Y2XA 4FSOA
chains in the Genus database with same CATH superfamily
4KRAA 3LK2B 5G3AA 1GFNA 1Q9GA 2XE3A 2XE2A 3KVDD 3PF1A 3UU2A 3V8UA 4O4UA 4AFKA 3A2SX 2WJQA 3PORA 4FSPA 4N74A 1ZHYA 2ZLDA 4FOZA 3HOLA 3DA3A 4CTDA 4F4BA 4RJXA 6PRNA 4FZMA 2WJRA 2KZ7B 2Y0LA 4JFBA 1MM5A 3BRZA 2AXTO 1YS5A 4AYDC 2Y0KA 3O0EA 1BH3A 4QQ1A 4O3ZA 3DA4A 5AFUL 2R4PA 4AYNA 2Y7SA 1GFMA 1QJ9A 2PORA 2W80C 4U9CA 4AKRB 3GP6A 5T5FA 5GTHO 5FVNA 3FYXA 3QRAA 4XNLA 3SZDA 3EMNX 4O3WA 4AYMC 3NJTA 3JCUO 4PJ0O 4LSIA 5TISO 8PRNA 3T20A 3C5OA 4N75A 7PRNA 4LSEA 3VZTX 4GCSA 4C4VB 3AAEA 2XTQA 3SY9A 2ERVA 2K0LA 4G75A 1MPFA 3AA1B 4FZLA 5E79O 3RBHA 2FGRA 2K4TA 2JQYA 1THQA 3POUA 3VY8X 3LK2A 2R4OA 4Z3TA 5IYUA 5DL7A 1P4TA 3SYSA 2X27X 3JTYA 4O49A 2F1VA 2N2MA 5DL5A 4E1SA 5H2FO 1IZNB 5EE2A 3T0SA 1ZHWA 3UAQA 3PQUA 3AA6B 5ADXL 2KDYA 2KZ7A 2YNKA 3LK3B 4O3YA 5AFUK 4RLCA 2XG6A 3T24A 4UB6O 1H6S1 2M07A 2X9KA 3VE1A 5G26A 4AZLA 3K19A 4LSFA 1QJPA 2W81C 3AA7B 4FRTA 1GFOA 3POXA 4AUIA 5GV0A 4K3BA 3DWOX 2O4VA 3HWBA 3QRCA 1GFQA 4AKRA 3WU2O 1S5LO 2ZFGA 1QJ8A 2JMMA 3LK41 4FZNA 2XE5A 2YPVA 4PUXA 3VZWX 3WI4A 2FGQX 1HXTA 2J1NA 2KXPB 4B61A 1OSMA 2F1CX 2PRNA 1BT9A 4LSHA 2R4LA 4G76A 1T16A 4C69X 1GFPA 3AAAB 2OMFA 4RL9A 4C4VA 4RLBA 2QTKA 1T1LA 5DL8A 4O4XA 4PR7A 1OPFA 3A0BO 3AA1A 1E54A 3HW9A 3LK42 3PGSA 4FESA 3BS0A 4AYID 4D65A 3POQA 1HXXA 2WVPA 4N59A 4AKMA 5JDPA 4GCPA 4D64A 4FQEA 2F1TA 2GE4A 3AA0B 4BUMX 5ADXK 1G90A 1IZNA 2KC0A 2R89A 5GTIO 5KAIO 1ZHXA 4FT6A 2LFUA 3SZVA 1HXUA 4XNKA 3TZGA 3SYBA 3G7GA 3AA6A 1Q9FA 3LK3A 2IWVA 4GF4A 2Y0HA 3PRNA 2ODJA 4RJWA 2M06A 3SY7A 2IWWA 5DL6A 1ZHTA 4FMSA 3AA7A 4GHBA 4JCHA 3WI5A 2N2LA 2XMXA 1ZHZA 4KR8A 5G39A 1PHOA 3PGRA 4GCQA 5PRNA 3BRYA 2KXPA 2MNHA 4D5UA 4E1TA 3NSGA 4UB8O 2MHLA 3A0HO 3DZMA 4FRXA 5D5DA 3AAAA 3VE2A 4K3CA 3VY9X 5B66O 3UPGA 1ORMA 3VZUX 5B5EO 3DWNA 4AYEC 1PRNA 2LHFA 2J4UP 4KR4A 3KZIO 5G38A 2XE1A 3PQSA 2XTRA 3HOEA 3PGUA 2Y2XA 2R8AA 4N58A 5KAFO 4IL6O 1BXWA 3AAEB 4FUVA 4O3XB 4C00A 3AA0A 1MM4A 2R88A 2R4NA 4FSOA
chains in the Genus database with same CATH topology
4KRAA 3LK2B 1GFNA 1Q9GA 2XE3A 2XE2A 3KVDD 3UU2A 3V8UA 4AFKA 4O4UA 3A2SX 3PORA 4FSPA 1ZHYA 2ZLDA 4FOZA 3HOLA 3DA3A 4F4BA 4RJXA 6PRNA 4FZMA 2KZ7B 2Y0LA 4JFBA 1MM5A 1YS5A 4AYDC 2Y0KA 3O0EA 1BH3A 4QQ1A 4O3ZA 3DA4A 5AFUL 4AYNA 2Y7SA 1GFMA 1QJ9A 2PORA 2W80C 4U9CA 4AKRB 3GP6A 5T5FA 5FVNA 3FYXA 3QRAA 4XNLA 3SZDA 3EMNX 4O3WA 4AYMC 4LSIA 8PRNA 3T20A 3C5OA 7PRNA 4LSEA 3VZTX 4GCSA 3AAEA 2XTQA 3SY9A 2ERVA 2K0LA 4G75A 1MPFA 3AA1B 4FZLA 3RBHA 2FGRA 2K4TA 3VY8X 1THQA 3POUA 4Z3TA 3LK2A 5IYUA 5DL7A 1P4TA 3SYSA 2X27X 3JTYA 4O49A 2F1VA 2N2MA 5DL5A 4E1SA 1IZNB 5EE2A 3T0SA 1ZHWA 3UAQA 3PQUA 3AA6B 5ADXL 2KDYA 2KZ7A 2YNKA 3LK3B 4O3YA 5AFUK 4RLCA 2XG6A 3T24A 3VE1A 1H6S1 2M07A 5G26A 4AZLA 3K19A 4LSFA 1QJPA 2W81C 3AA7B 4FRTA 1GFOA 3POXA 4AUIA 5GV0A 2O4VA 3HWBA 3QRCA 1GFQA 4AKRA 2ZFGA 1QJ8A 2JMMA 3LK41 4FZNA 2XE5A 2YPVA 4PUXA 3VZWX 3WI4A 2FGQX 1HXTA 2J1NA 2KXPB 4B61A 1OSMA 2PRNA 1BT9A 4LSHA 4G76A 4C69X 1GFPA 3AAAB 2OMFA 4RL9A 4RLBA 2QTKA 5DL8A 4O4XA 1OPFA 3AA1A 1E54A 3HW9A 3LK42 4FESA 4D65A 4AYID 3POQA 1HXXA 4N59A 4AKMA 5JDPA 4GCPA 4D64A 2F1TA 2GE4A 3AA0B 4BUMX 5ADXK 1G90A 1IZNA 2KC0A 1ZHXA 4FT6A 2LFUA 3SZVA 1HXUA 4XNKA 3TZGA 3SYBA 3G7GA 3AA6A 1Q9FA 3LK3A 4GF4A 2Y0HA 3PRNA 2ODJA 4RJWA 2M06A 3SY7A 5DL6A 1ZHTA 4FMSA 3AA7A 4GHBA 4JCHA 3WI5A 2N2LA 2XMXA 1ZHZA 4KR8A 1PHOA 4GCQA 5PRNA 2KXPA 2MNHA 4D5UA 4E1TA 3NSGA 2MHLA 4FRXA 5D5DA 3VE2A 3AAAA 3VY9X 3UPGA 1ORMA 3VZUX 4AYEC 2J4UP 1PRNA 2LHFA 4KR4A 2XE1A 3PQSA 2XTRA 3HOEA 2Y2XA 4N58A 4O3XB 1BXWA 3AAEB 4FUVA 3AA0A 1MM4A 4FSOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KRA A;  1GFN A;  2XE3 A;  2XE2 A;  3UU2 A;  3A2S X;  3POR A;  4FSP A;  2ZLD A;  4FOZ A;  4RJX A;  6PRN A;  2Y0L A;  4JFB A;  2Y0K A;  3O0E A;  1BH3 A;  1GFM A;  2POR A;  5FVN A;  3FYX A;  3SZD A;  3EMN X;  4LSI A;  8PRN A;  3T20 A;  7PRN A;  4LSE A;  3VZT X;  4GCS A;  3SY9 A;  1MPF A;  2FGR A;  2K4T A;  3VY8 X;  3POU A;  5DL7 A;  3SYS A;  3JTY A;  5DL5 A;  3T0S A;  3T24 A;  2XG6 A;  1H6S 1;  3K19 A;  4LSF A;  4FRT A;  1GFO A;  3POX A;  4AUI A;  2O4V A;  3HWB A;  1GFQ A;  2ZFG A;  3WI4 A;  2XE5 A;  3VZW X;  2FGQ X;  1HXT A;  2J1N A;  1OSM A;  2PRN A;  1BT9 A;  4LSH A;  4C69 X;  1GFP A;  2OMF A;  5DL8 A;  2QTK A;  1OPF A;  1E54 A;  3HW9 A;  4D65 A;  3POQ A;  1HXX A;  5JDP A;  4GCP A;  4D64 A;  4BUM X;  3SZV A;  4FT6 A;  1HXU A;  3SYB A;  2Y0H A;  3PRN A;  2ODJ A;  4RJW A;  3SY7 A;  5DL6 A;  4FMS A;  3WI5 A;  4KR8 A;  1PHO A;  4GCQ A;  5PRN A;  4D5U A;  3NSG A;  4FRX A;  3VY9 X;  3UPG A;  3VZU X;  2J4U P;  1PRN A;  4KR4 A;  2XE1 A;  2Y2X A;  4FSO A; 
#chains in the Genus database with same CATH topology
 4KRA A;  3LK2 B;  5G3A A;  1GFN A;  1Q9G A;  2XE3 A;  2XE2 A;  3KVD D;  3PF1 A;  3UU2 A;  3V8U A;  4O4U A;  4AFK A;  3A2S X;  2WJQ A;  3POR A;  4FSP A;  4N74 A;  1ZHY A;  2ZLD A;  4FOZ A;  3HOL A;  3DA3 A;  4CTD A;  4F4B A;  4RJX A;  6PRN A;  4FZM A;  2WJR A;  2KZ7 B;  2Y0L A;  4JFB A;  1MM5 A;  3BRZ A;  2AXT O;  1YS5 A;  4AYD C;  2Y0K A;  3O0E A;  1BH3 A;  4QQ1 A;  4O3Z A;  3DA4 A;  5AFU L;  2R4P A;  4AYN A;  2Y7S A;  1GFM A;  1QJ9 A;  2POR A;  2W80 C;  4U9C A;  4AKR B;  3GP6 A;  5T5F A;  5GTH O;  5FVN A;  3FYX A;  3QRA A;  4XNL A;  3SZD A;  3EMN X;  4O3W A;  4AYM C;  3NJT A;  3JCU O;  4PJ0 O;  4LSI A;  5TIS O;  8PRN A;  3T20 A;  3C5O A;  4N75 A;  7PRN A;  4LSE A;  3VZT X;  4GCS A;  4C4V B;  3AAE A;  2XTQ A;  3SY9 A;  2ERV A;  2K0L A;  4G75 A;  1MPF A;  3AA1 B;  4FZL A;  5E79 O;  3RBH A;  2FGR A;  2K4T A;  2JQY A;  1THQ A;  3POU A;  3VY8 X;  3LK2 A;  2R4O A;  4Z3T A;  5IYU A;  5DL7 A;  1P4T A;  3SYS A;  2X27 X;  3JTY A;  4O49 A;  2F1V A;  2N2M A;  5DL5 A;  4E1S A;  5H2F O;  1IZN B;  5EE2 A;  3T0S A;  1ZHW A;  3UAQ A;  3PQU A;  3AA6 B;  5ADX L;  2KDY A;  2KZ7 A;  2YNK A;  3LK3 B;  4O3Y A;  5AFU K;  4RLC A;  2XG6 A;  3T24 A;  4UB6 O;  1H6S 1;  2M07 A;  2X9K A;  3VE1 A;  5G26 A;  4AZL A;  3K19 A;  4LSF A;  1QJP A;  2W81 C;  3AA7 B;  4FRT A;  1GFO A;  3POX A;  4AUI A;  5GV0 A;  4K3B A;  3DWO X;  2O4V A;  3HWB A;  3QRC A;  1GFQ A;  4AKR A;  3WU2 O;  1S5L O;  2ZFG A;  1QJ8 A;  2JMM A;  3LK4 1;  4FZN A;  2XE5 A;  2YPV A;  4PUX A;  3VZW X;  3WI4 A;  2FGQ X;  1HXT A;  2J1N A;  2KXP B;  4B61 A;  1OSM A;  2F1C X;  2PRN A;  1BT9 A;  4LSH A;  2R4L A;  4G76 A;  1T16 A;  4C69 X;  1GFP A;  3AAA B;  2OMF A;  4RL9 A;  4C4V A;  4RLB A;  2QTK A;  1T1L A;  5DL8 A;  4O4X A;  4PR7 A;  1OPF A;  3A0B O;  3AA1 A;  1E54 A;  3HW9 A;  3LK4 2;  3PGS A;  4FES A;  3BS0 A;  4AYI D;  4D65 A;  3POQ A;  1HXX A;  2WVP A;  4N59 A;  4AKM A;  5JDP A;  4GCP A;  4D64 A;  4FQE A;  2F1T A;  2GE4 A;  3AA0 B;  4BUM X;  5ADX K;  1G90 A;  1IZN A;  2KC0 A;  2R89 A;  5GTI O;  5KAI O;  1ZHX A;  4FT6 A;  2LFU A;  3SZV A;  1HXU A;  4XNK A;  3TZG A;  3SYB A;  3G7G A;  3AA6 A;  1Q9F A;  3LK3 A;  2IWV A;  4GF4 A;  2Y0H A;  3PRN A;  2ODJ A;  4RJW A;  2M06 A;  3SY7 A;  2IWW A;  5DL6 A;  1ZHT A;  4FMS A;  3AA7 A;  4GHB A;  4JCH A;  3WI5 A;  2N2L A;  2XMX A;  1ZHZ A;  4KR8 A;  5G39 A;  1PHO A;  3PGR A;  4GCQ A;  5PRN A;  3BRY A;  2KXP A;  2MNH A;  4D5U A;  4E1T A;  3NSG A;  4UB8 O;  2MHL A;  3A0H O;  3DZM A;  4FRX A;  5D5D A;  3AAA A;  3VE2 A;  4K3C A;  3VY9 X;  5B66 O;  3UPG A;  1ORM A;  3VZU X;  5B5E O;  3DWN A;  4AYE C;  1PRN A;  2LHF A;  2J4U P;  4KR4 A;  3KZI O;  5G38 A;  2XE1 A;  3PQS A;  2XTR A;  3HOE A;  3PGU A;  2Y2X A;  2R8A A;  4N58 A;  5KAF O;  4IL6 O;  1BXW A;  3AAE B;  4FUV A;  4O3X B;  4C00 A;  3AA0 A;  1MM4 A;  2R88 A;  2R4N A;  4FSO A; 
#chains in the Genus database with same CATH homology
 4KRA A;  3LK2 B;  1GFN A;  1Q9G A;  2XE3 A;  2XE2 A;  3KVD D;  3UU2 A;  3V8U A;  4AFK A;  4O4U A;  3A2S X;  3POR A;  4FSP A;  1ZHY A;  2ZLD A;  4FOZ A;  3HOL A;  3DA3 A;  4F4B A;  4RJX A;  6PRN A;  4FZM A;  2KZ7 B;  2Y0L A;  4JFB A;  1MM5 A;  1YS5 A;  4AYD C;  2Y0K A;  3O0E A;  1BH3 A;  4QQ1 A;  4O3Z A;  3DA4 A;  5AFU L;  4AYN A;  2Y7S A;  1GFM A;  1QJ9 A;  2POR A;  2W80 C;  4U9C A;  4AKR B;  3GP6 A;  5T5F A;  5FVN A;  3FYX A;  3QRA A;  4XNL A;  3SZD A;  3EMN X;  4O3W A;  4AYM C;  4LSI A;  8PRN A;  3T20 A;  3C5O A;  7PRN A;  4LSE A;  3VZT X;  4GCS A;  3AAE A;  2XTQ A;  3SY9 A;  2ERV A;  2K0L A;  4G75 A;  1MPF A;  3AA1 B;  4FZL A;  3RBH A;  2FGR A;  2K4T A;  3VY8 X;  1THQ A;  3POU A;  4Z3T A;  3LK2 A;  5IYU A;  5DL7 A;  1P4T A;  3SYS A;  2X27 X;  3JTY A;  4O49 A;  2F1V A;  2N2M A;  5DL5 A;  4E1S A;  1IZN B;  5EE2 A;  3T0S A;  1ZHW A;  3UAQ A;  3PQU A;  3AA6 B;  5ADX L;  2KDY A;  2KZ7 A;  2YNK A;  3LK3 B;  4O3Y A;  5AFU K;  4RLC A;  2XG6 A;  3T24 A;  3VE1 A;  1H6S 1;  2M07 A;  5G26 A;  4AZL A;  3K19 A;  4LSF A;  1QJP A;  2W81 C;  3AA7 B;  4FRT A;  1GFO A;  3POX A;  4AUI A;  5GV0 A;  2O4V A;  3HWB A;  3QRC A;  1GFQ A;  4AKR A;  2ZFG A;  1QJ8 A;  2JMM A;  3LK4 1;  4FZN A;  2XE5 A;  2YPV A;  4PUX A;  3VZW X;  3WI4 A;  2FGQ X;  1HXT A;  2J1N A;  2KXP B;  4B61 A;  1OSM A;  2PRN A;  1BT9 A;  4LSH A;  4G76 A;  4C69 X;  1GFP A;  3AAA B;  2OMF A;  4RL9 A;  4RLB A;  2QTK A;  5DL8 A;  4O4X A;  1OPF A;  3AA1 A;  1E54 A;  3HW9 A;  3LK4 2;  4FES A;  4D65 A;  4AYI D;  3POQ A;  1HXX A;  4N59 A;  4AKM A;  5JDP A;  4GCP A;  4D64 A;  2F1T A;  2GE4 A;  3AA0 B;  4BUM X;  5ADX K;  1G90 A;  1IZN A;  2KC0 A;  1ZHX A;  4FT6 A;  2LFU A;  3SZV A;  1HXU A;  4XNK A;  3TZG A;  3SYB A;  3G7G A;  3AA6 A;  1Q9F A;  3LK3 A;  4GF4 A;  2Y0H A;  3PRN A;  2ODJ A;  4RJW A;  2M06 A;  3SY7 A;  5DL6 A;  1ZHT A;  4FMS A;  3AA7 A;  4GHB A;  4JCH A;  3WI5 A;  2N2L A;  2XMX A;  1ZHZ A;  4KR8 A;  1PHO A;  4GCQ A;  5PRN A;  2KXP A;  2MNH A;  4D5U A;  4E1T A;  3NSG A;  2MHL A;  4FRX A;  5D5D A;  3VE2 A;  3AAA A;  3VY9 X;  3UPG A;  1ORM A;  3VZU X;  4AYE C;  2J4U P;  1PRN A;  2LHF A;  4KR4 A;  2XE1 A;  3PQS A;  2XTR A;  3HOE A;  2Y2X A;  4N58 A;  4O3X B;  1BXW A;  3AAE B;  4FUV A;  3AA0 A;  1MM4 A;  4FSO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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