4AYNA

Structure of the c-terminal barrel of neisseria meningitidis fhbp variant 2
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
125
structure length
125
Chain Sequence
GGEHTAFNQLPSGKAEYHGKAFSSDDPNGRLHYSIDFTKKQGYGRIEHLKTPEQNVELASAELKADEKSHAVILGDTRYGSEEKGTYHLALFGDRAQEIAGSATVKIREKVHEIGIAGKQLEHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune system
molecule keywords FACTOR H-BINDING PROTEIN
publication title Design and Evaluation of Meningococcal Vaccines Through Structure-Based Modification of Host and Pathogen Molecules.
pubmed doi rcsb
source organism Neisseria meningitidis mc58
total genus 31
structure length 125
sequence length 125
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08794 Lipoprot_C Lipoprotein GNA1870 C terminal like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.90 Mainly Beta Beta Barrel Porin Porin 4aynA00
1YS5A 4O4XA 2LFUA 3VE1A 4AYDC 4Z3TA 3VE2A 4AYEC 4AYID 2YPVA 4O3WA 2W80C 4O3ZA 2W81C 4O3XB 4AYMC 4U9CA 2KDYA 5T5FA 3V8UA 4O49A 4AYNA 2KC0A 3PQUA 4QQ1A 3KVDD 5EE2A 4O4UA 3PQSA 4O3YA 3HOLA 3HOEA 3UAQA 2Y7SA
chains in the Genus database with same CATH superfamily
5GTHO 1OPFA 3AA6A 3SZDA 4AZLA 1HXXA 3BS0A 4FESA 4FRXA 5GV0A 4FSPA 3VE1A 2K0LA 4G76A 4LSFA 3WI5A 4FZNA 4AYID 4GHBA 4D65A 5G38A 4F4BA 1Q9GA 2Y2XA 2J1NA 3BRYA 3TZGA 1ZHTA 2N2MA 2JQYA 1QJ8A 2XG6A 3VZUX 4O3WA 1BT9A 1ORMA 4GF4A 2W81C 4B61A 1THQA 5H2FO 1MPFA 3SZVA 2MHLA 3PGSA 4GCSA 4RLBA 1HXTA 1GFNA 2X9KA 2XTQA 4U9CA 4AYMC 2PORA 3T0SA 3DWNA 4K3CA 3UPGA 3BRZA 3LK42 2R4PA 1GFQA 1ZHXA 2KZ7A 3AA1B 3PGRA 3PQUA 5E79O 7PRNA 3KVDD 4FZMA 2QTKA 2WVPA 5B66O 1IZNB 3T24A 3LK3A 3PQSA 4PUXA 4O3YA 4JFBA 1PHOA 4FT6A 1P4TA 4FRTA 2J4UP 3POUA 5DL6A 3A2SX 3UU2A 2IWVA 3QRAA 4LSEA 3JTYA 3PGUA 5G39A 3QRCA 3AAAB 2FGQX 4KR4A 3AA0B 4RLCA 4RJWA 5KAIO 3EMNX 5D5DA 4AYDC 3HWBA 2K4TA 2KZ7B 3AA1A 4PJ0O 4E1TA 4AUIA 4Z3TA 2XE1A 2Y0HA 4GCQA 5B5EO 1IZNA 1GFPA 3PF1A 2M07A 2W80C 2Y0LA 3AAEB 3POQA 4FZLA 1E54A 4XNLA 5DL5A 3PRNA 2AXTO 1GFOA 3V8UA 2R4LA 4O49A 5KAFO 4G75A 3G7GA 2WJQA 3AAAA 2LHFA 3AA0A 4QQ1A 3WI4A 3NSGA 4E1SA 1G90A 2ZLDA 1HXUA 1Q9FA 3HOLA 3HOEA 3UAQA 2ODJA 3AAEA 4LSIA 4D64A 1PRNA 3NJTA 2XTRA 1YS5A 5AFUL 4FUVA 1GFMA 3DWOX 2JMMA 4O4XA 2LFUA 1ZHYA 3WU2O 2PRNA 5G26A 4LSHA 1ZHWA 3FYXA 3DA4A 4IL6O 4C4VB 3VE2A 3DZMA 3VY8X 2M06A 4XNKA 3LK2B 2R88A 6PRNA 4N59A 1QJPA 4O3ZA 3SYSA 5G3AA 2WJRA 2ZFGA 2KXPA 2R89A 4N74A 2KDYA 4N75A 3O0EA 2R4NA 5TISO 2F1VA 1T16A 4AFKA 4FOZA 2ERVA 4AYNA 3LK41 4RJXA 2KC0A 3SYBA 4D5UA 4FQEA 2F1CX 2R4OA 4FMSA 5EE2A 4JCHA 4K3BA 4O4UA 4CTDA 4UB6O 4C4VA 3POXA 3GP6A 2XE3A 3LK2A 3VZTX 5IYUA 4AKRB 8PRNA 5DL7A 5GTIO 3K19A 4AYEC 2MNHA 2KXPB 3RBHA 1BH3A 2XE2A 3KZIO 3DA3A 1QJ9A 5AFUK 5JDPA 1BXWA 3A0HO 4N58A 5FVNA 3AA7B 5ADXL 4PR7A 2N2LA 4KR8A 3SY7A 2YPVA 1ZHZA 2X27X 2GE4A 3JCUO 1S5LO 2XMXA 5ADXK 4GCPA 3LK3B 2OMFA 1MM4A 4O3XB 3SY9A 3A0BO 2R8AA 4AKRA 3AA6B 4KRAA 5T5FA 3VZWX 3C5OA 1MM5A 3HW9A 2FGRA 2F1TA 5DL8A 4C00A 4RL9A 1H6S1 2YNKA 4C69X 2IWWA 1T1LA 3PORA 3AA7A 4BUMX 4AKMA 3T20A 2Y0KA 2XE5A 4UB8O 1OSMA 2Y7SA 3VY9X 2O4VA 4FSOA 5PRNA
chains in the Genus database with same CATH topology
1OPFA 3AA6A 3SZDA 4AZLA 1HXXA 4FESA 4FRXA 5GV0A 4FSPA 3VE1A 2K0LA 4G76A 4LSFA 3WI5A 4FZNA 4GHBA 4D65A 4F4BA 1Q9GA 2Y2XA 2J1NA 3TZGA 3VZUX 1ZHTA 2N2MA 1QJ8A 2XG6A 4AYEC 4AYID 4O3WA 1BT9A 1ORMA 4GF4A 2W81C 4B61A 1THQA 1MPFA 3SZVA 2MHLA 4GCSA 4RLBA 4AYMC 1HXTA 1GFNA 2XTQA 4U9CA 2PORA 3T0SA 3UPGA 3LK42 3PQUA 1GFQA 1ZHXA 2KZ7A 3AA1B 7PRNA 3KVDD 4FZMA 2QTKA 1IZNB 3T24A 3LK3A 3PQSA 4PUXA 4O3YA 4JFBA 1PHOA 4FT6A 1P4TA 4FRTA 2J4UP 3POUA 5DL6A 3A2SX 3UU2A 4LSEA 3QRAA 3JTYA 3QRCA 3AAAB 2FGQX 4KR4A 3AA0B 4RLCA 4RJWA 4AYDC 3EMNX 5D5DA 4E1TA 3HWBA 2K4TA 2KZ7B 3AA1A 4AUIA 4Z3TA 2XE1A 2Y0HA 4GCQA 1IZNA 1GFPA 4AKMA 2M07A 2W80C 2Y0LA 3AAEB 3POQA 4FZLA 1E54A 4XNLA 5DL5A 3PRNA 1GFOA 3V8UA 4O49A 4G75A 3G7GA 3AAAA 2LHFA 3AA0A 4QQ1A 3WI4A 3NSGA 4E1SA 1G90A 2ZLDA 1HXUA 1Q9FA 3HOLA 3HOEA 3UAQA 2ODJA 3AAEA 4LSIA 4D64A 1PRNA 2XTRA 1YS5A 5AFUL 4FUVA 1GFMA 2JMMA 4O4XA 2LFUA 1ZHYA 2PRNA 5G26A 4LSHA 1ZHWA 3FYXA 3DA4A 3VE2A 3VY8X 2M06A 4XNKA 3LK2B 6PRNA 4N59A 1QJPA 4O3ZA 3SYSA 2ZFGA 2KXPA 2KDYA 3O0EA 2F1VA 4AFKA 4FOZA 2ERVA 4AYNA 3LK41 4RJXA 2KC0A 3SYBA 4D5UA 4FMSA 5EE2A 4JCHA 4O4UA 3POXA 3GP6A 2XE3A 3LK2A 3VZTX 5IYUA 4AKRB 8PRNA 5DL7A 3K19A 2MNHA 2KXPB 3RBHA 1BH3A 2XE2A 3DA3A 1QJ9A 5AFUK 5JDPA 1BXWA 4N58A 5FVNA 3AA7B 5ADXL 2N2LA 4KR8A 3SY7A 2YPVA 1ZHZA 2X27X 2GE4A 5ADXK 2XMXA 4GCPA 3LK3B 2OMFA 1MM4A 4O3XB 3SY9A 4AKRA 3AA6B 4KRAA 5T5FA 3VZWX 3C5OA 1MM5A 3HW9A 2FGRA 2F1TA 5DL8A 4RL9A 1H6S1 2YNKA 4C69X 3PORA 3AA7A 4BUMX 3T20A 2Y0KA 2XE5A 1OSMA 2Y7SA 3VY9X 2O4VA 4FSOA 5PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YS5 A;  4O4X A;  2LFU A;  3VE1 A;  4AYD C;  4Z3T A;  3VE2 A;  4AYE C;  4AYI D;  2YPV A;  4O3W A;  2W80 C;  4O3Z A;  2W81 C;  4O3X B;  4AYM C;  4U9C A;  2KDY A;  5T5F A;  3V8U A;  4O49 A;  4AYN A;  2KC0 A;  3PQU A;  4QQ1 A;  3KVD D;  5EE2 A;  4O4U A;  3PQS A;  4O3Y A;  3HOL A;  3HOE A;  3UAQ A;  2Y7S A; 
#chains in the Genus database with same CATH topology
 5GTH O;  1OPF A;  3AA6 A;  3SZD A;  4AZL A;  1HXX A;  3BS0 A;  4FES A;  4FRX A;  5GV0 A;  4FSP A;  3VE1 A;  2K0L A;  4G76 A;  4LSF A;  3WI5 A;  4FZN A;  4AYI D;  4GHB A;  4D65 A;  5G38 A;  4F4B A;  1Q9G A;  2Y2X A;  2J1N A;  3BRY A;  3TZG A;  1ZHT A;  2N2M A;  2JQY A;  1QJ8 A;  2XG6 A;  3VZU X;  4O3W A;  1BT9 A;  1ORM A;  4GF4 A;  2W81 C;  4B61 A;  1THQ A;  5H2F O;  1MPF A;  3SZV A;  2MHL A;  3PGS A;  4GCS A;  4RLB A;  1HXT A;  1GFN A;  2X9K A;  2XTQ A;  4U9C A;  4AYM C;  2POR A;  3T0S A;  3DWN A;  4K3C A;  3UPG A;  3BRZ A;  3LK4 2;  2R4P A;  1GFQ A;  1ZHX A;  2KZ7 A;  3AA1 B;  3PGR A;  3PQU A;  5E79 O;  7PRN A;  3KVD D;  4FZM A;  2QTK A;  2WVP A;  5B66 O;  1IZN B;  3T24 A;  3LK3 A;  3PQS A;  4PUX A;  4O3Y A;  4JFB A;  1PHO A;  4FT6 A;  1P4T A;  4FRT A;  2J4U P;  3POU A;  5DL6 A;  3A2S X;  3UU2 A;  2IWV A;  3QRA A;  4LSE A;  3JTY A;  3PGU A;  5G39 A;  3QRC A;  3AAA B;  2FGQ X;  4KR4 A;  3AA0 B;  4RLC A;  4RJW A;  5KAI O;  3EMN X;  5D5D A;  4AYD C;  3HWB A;  2K4T A;  2KZ7 B;  3AA1 A;  4PJ0 O;  4E1T A;  4AUI A;  4Z3T A;  2XE1 A;  2Y0H A;  4GCQ A;  5B5E O;  1IZN A;  1GFP A;  3PF1 A;  2M07 A;  2W80 C;  2Y0L A;  3AAE B;  3POQ A;  4FZL A;  1E54 A;  4XNL A;  5DL5 A;  3PRN A;  2AXT O;  1GFO A;  3V8U A;  2R4L A;  4O49 A;  5KAF O;  4G75 A;  3G7G A;  2WJQ A;  3AAA A;  2LHF A;  3AA0 A;  4QQ1 A;  3WI4 A;  3NSG A;  4E1S A;  1G90 A;  2ZLD A;  1HXU A;  1Q9F A;  3HOL A;  3HOE A;  3UAQ A;  2ODJ A;  3AAE A;  4LSI A;  4D64 A;  1PRN A;  3NJT A;  2XTR A;  1YS5 A;  5AFU L;  4FUV A;  1GFM A;  3DWO X;  2JMM A;  4O4X A;  2LFU A;  1ZHY A;  3WU2 O;  2PRN A;  5G26 A;  4LSH A;  1ZHW A;  3FYX A;  3DA4 A;  4IL6 O;  4C4V B;  3VE2 A;  3DZM A;  3VY8 X;  2M06 A;  4XNK A;  3LK2 B;  2R88 A;  6PRN A;  4N59 A;  1QJP A;  4O3Z A;  3SYS A;  5G3A A;  2WJR A;  2ZFG A;  2KXP A;  2R89 A;  4N74 A;  2KDY A;  4N75 A;  3O0E A;  2R4N A;  5TIS O;  2F1V A;  1T16 A;  4AFK A;  4FOZ A;  2ERV A;  4AYN A;  3LK4 1;  4RJX A;  2KC0 A;  3SYB A;  4D5U A;  4FQE A;  2F1C X;  2R4O A;  4FMS A;  5EE2 A;  4JCH A;  4K3B A;  4O4U A;  4CTD A;  4UB6 O;  4C4V A;  3POX A;  3GP6 A;  2XE3 A;  3LK2 A;  3VZT X;  5IYU A;  4AKR B;  8PRN A;  5DL7 A;  5GTI O;  3K19 A;  4AYE C;  2MNH A;  2KXP B;  3RBH A;  1BH3 A;  2XE2 A;  3KZI O;  3DA3 A;  1QJ9 A;  5AFU K;  5JDP A;  1BXW A;  3A0H O;  4N58 A;  5FVN A;  3AA7 B;  5ADX L;  4PR7 A;  2N2L A;  4KR8 A;  3SY7 A;  2YPV A;  1ZHZ A;  2X27 X;  2GE4 A;  3JCU O;  1S5L O;  2XMX A;  5ADX K;  4GCP A;  3LK3 B;  2OMF A;  1MM4 A;  4O3X B;  3SY9 A;  3A0B O;  2R8A A;  4AKR A;  3AA6 B;  4KRA A;  5T5F A;  3VZW X;  3C5O A;  1MM5 A;  3HW9 A;  2FGR A;  2F1T A;  5DL8 A;  4C00 A;  4RL9 A;  1H6S 1;  2YNK A;  4C69 X;  2IWW A;  1T1L A;  3POR A;  3AA7 A;  4BUM X;  4AKM A;  3T20 A;  2Y0K A;  2XE5 A;  4UB8 O;  1OSM A;  2Y7S A;  3VY9 X;  2O4V A;  4FSO A;  5PRN A; 
#chains in the Genus database with same CATH homology
 1OPF A;  3AA6 A;  3SZD A;  4AZL A;  1HXX A;  4FES A;  4FRX A;  5GV0 A;  4FSP A;  3VE1 A;  2K0L A;  4G76 A;  4LSF A;  3WI5 A;  4FZN A;  4GHB A;  4D65 A;  4F4B A;  1Q9G A;  2Y2X A;  2J1N A;  3TZG A;  3VZU X;  1ZHT A;  2N2M A;  1QJ8 A;  2XG6 A;  4AYE C;  4AYI D;  4O3W A;  1BT9 A;  1ORM A;  4GF4 A;  2W81 C;  4B61 A;  1THQ A;  1MPF A;  3SZV A;  2MHL A;  4GCS A;  4RLB A;  4AYM C;  1HXT A;  1GFN A;  2XTQ A;  4U9C A;  2POR A;  3T0S A;  3UPG A;  3LK4 2;  3PQU A;  1GFQ A;  1ZHX A;  2KZ7 A;  3AA1 B;  7PRN A;  3KVD D;  4FZM A;  2QTK A;  1IZN B;  3T24 A;  3LK3 A;  3PQS A;  4PUX A;  4O3Y A;  4JFB A;  1PHO A;  4FT6 A;  1P4T A;  4FRT A;  2J4U P;  3POU A;  5DL6 A;  3A2S X;  3UU2 A;  4LSE A;  3QRA A;  3JTY A;  3QRC A;  3AAA B;  2FGQ X;  4KR4 A;  3AA0 B;  4RLC A;  4RJW A;  4AYD C;  3EMN X;  5D5D A;  4E1T A;  3HWB A;  2K4T A;  2KZ7 B;  3AA1 A;  4AUI A;  4Z3T A;  2XE1 A;  2Y0H A;  4GCQ A;  1IZN A;  1GFP A;  4AKM A;  2M07 A;  2W80 C;  2Y0L A;  3AAE B;  3POQ A;  4FZL A;  1E54 A;  4XNL A;  5DL5 A;  3PRN A;  1GFO A;  3V8U A;  4O49 A;  4G75 A;  3G7G A;  3AAA A;  2LHF A;  3AA0 A;  4QQ1 A;  3WI4 A;  3NSG A;  4E1S A;  1G90 A;  2ZLD A;  1HXU A;  1Q9F A;  3HOL A;  3HOE A;  3UAQ A;  2ODJ A;  3AAE A;  4LSI A;  4D64 A;  1PRN A;  2XTR A;  1YS5 A;  5AFU L;  4FUV A;  1GFM A;  2JMM A;  4O4X A;  2LFU A;  1ZHY A;  2PRN A;  5G26 A;  4LSH A;  1ZHW A;  3FYX A;  3DA4 A;  3VE2 A;  3VY8 X;  2M06 A;  4XNK A;  3LK2 B;  6PRN A;  4N59 A;  1QJP A;  4O3Z A;  3SYS A;  2ZFG A;  2KXP A;  2KDY A;  3O0E A;  2F1V A;  4AFK A;  4FOZ A;  2ERV A;  4AYN A;  3LK4 1;  4RJX A;  2KC0 A;  3SYB A;  4D5U A;  4FMS A;  5EE2 A;  4JCH A;  4O4U A;  3POX A;  3GP6 A;  2XE3 A;  3LK2 A;  3VZT X;  5IYU A;  4AKR B;  8PRN A;  5DL7 A;  3K19 A;  2MNH A;  2KXP B;  3RBH A;  1BH3 A;  2XE2 A;  3DA3 A;  1QJ9 A;  5AFU K;  5JDP A;  1BXW A;  4N58 A;  5FVN A;  3AA7 B;  5ADX L;  2N2L A;  4KR8 A;  3SY7 A;  2YPV A;  1ZHZ A;  2X27 X;  2GE4 A;  5ADX K;  2XMX A;  4GCP A;  3LK3 B;  2OMF A;  1MM4 A;  4O3X B;  3SY9 A;  4AKR A;  3AA6 B;  4KRA A;  5T5F A;  3VZW X;  3C5O A;  1MM5 A;  3HW9 A;  2FGR A;  2F1T A;  5DL8 A;  4RL9 A;  1H6S 1;  2YNK A;  4C69 X;  3POR A;  3AA7 A;  4BUM X;  3T20 A;  2Y0K A;  2XE5 A;  1OSM A;  2Y7S A;  3VY9 X;  2O4V A;  4FSO A;  5PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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