1P4TA

Crystal structure of neisserial surface protein a (nspa)
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
155
structure length
155
Chain Sequence
EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords outer membrane protein NspA
publication title Crystal structure of Neisserial Surface Protein A (NspA), a conserved outer membrane protein with vaccine potential
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 40
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2003-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02462 Opacity Opacity family porin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1p4tA00
1MM5A 2ERVA 2F1VA 3C5OA 2MNHA 3QRCA 2LHFA 1MM4A 2M06A 1Q9FA 2M07A 3GP6A 1P4TA 2X27X 2F1TA 1Q9GA 1QJ9A 2K0LA 1QJ8A 2N2MA 2N2LA 4PUXA 2JMMA 4RLCA 1QJPA 2GE4A 2MHLA 1THQA 3G7GA 1ORMA 3QRAA 1BXWA 1G90A
chains in the Genus database with same CATH superfamily
1ZHXA 2ERVA 2KXPA 4AYMC 2KDYA 2WJQA 4FRXA 4G75A 4PR7A 3FYXA 2MNHA 2XE3A 4N58A 5GTIO 3VZUX 3DA4A 3QRCA 1H6S1 4K3CA 4C4VB 3JTYA 2R4OA 2LFUA 4FMSA 1MM4A 3HWBA 4LSEA 1GFOA 5AFUK 3PORA 5GV0A 2R4LA 4QQ1A 4FSPA 4GCSA 2R8AA 2R89A 3AA7B 3LK3A 3UAQA 4BUMX 1GFMA 2Y0LA 5G38A 4N75A 2PRNA 4O49A 1IZNB 6PRNA 2OMFA 5JDPA 2KZ7A 4O3ZA 4N74A 5D5DA 1PRNA 3KVDD 4O4XA 1QJ8A 5FVNA 3A2SX 4FESA 2F1CX 5PRNA 5E79O 4PUXA 5KAIO 2JMMA 3AA1A 3DWOX 4O4UA 3TZGA 1QJPA 2QTKA 4C69X 4O3XB 5IYUA 3SYSA 1THQA 5TISO 4FOZA 2O4VA 2R4NA 3AA0A 1MPFA 4FSOA 4GF4A 4F4BA 3PRNA 4D64A 3SZVA 4RL9A 2FGQX 3AAAA 4KRAA 3SY7A 3T20A 4AKRA 5DL8A 3BS0A 3C5OA 3HOLA 3AA6B 3WI5A 4Z3TA 4AZLA 2XE5A 2M06A 4C4VA 2M07A 1HXTA 4FT6A 2YNKA 4IL6O 2J1NA 1OPFA 4C00A 3A0HO 3DZMA 2X9KA 4GCQA 8PRNA 4AUIA 3NSGA 3AA7A 1T1LA 3DWNA 1Q9GA 1BT9A 2K0LA 1IZNA 3LK41 4KR8A 5EE2A 5DL6A 4AYNA 4JFBA 1GFNA 4AYID 4O3YA 2IWWA 2YPVA 2XMXA 2GE4A 2MHLA 4LSFA 2ODJA 5GTHO 4KR4A 3K19A 2Y0HA 3UU2A 1ORMA 3BRYA 3JCUO 7PRNA 1BXWA 3PGUA 4LSIA 3SY9A 4FZLA 1G90A 4FZMA 3O0EA 2R4PA 1T16A 1OSMA 2W81C 2WJRA 3VE1A 1GFQA 2KC0A 3AA6A 3VY8X 5KAFO 3UPGA 4GHBA 4RLBA 3V8UA 2Y0KA 3GP6A 4G76A 3VY9X 2ZFGA 3POXA 2R88A 1PHOA 3HW9A 4FZNA 2X27X 5DL5A 2XE1A 3SZDA 4AYEC 2F1TA 5T5FA 1YS5A 5ADXK 1QJ9A 2FGRA 2XTRA 1E54A 1GFPA 3AAEB 3NJTA 4FQEA 5G26A 3PF1A 2N2LA 2Y2XA 1BH3A 3DA3A 5ADXL 3LK2B 1ZHTA 3PQSA 3WU2O 1ZHWA 1HXXA 2PORA 3POUA 4RJXA 2KXPB 3VZWX 2ZLDA 4O3WA 4PJ0O 3WI4A 1ZHZA 3VZTX 1S5LO 4FRTA 3PGSA 4D5UA 1MM5A 2F1VA 3PQUA 4U9CA 4XNKA 3SYBA 4AKMA 4XNLA 3A0BO 2Y7SA 2XG6A 4E1TA 4LSHA 5B5EO 2LHFA 5G39A 3T24A 2J4UP 1Q9FA 4RJWA 3LK3B 4AFKA 3EMNX 1ZHYA 4D65A 3POQA 1P4TA 4K3BA 5AFUL 4UB6O 2KZ7B 5DL7A 2IWVA 4N59A 3T0SA 4B61A 5B66O 2JQYA 2AXTO 2K4TA 3AA1B 5H2FO 1HXUA 2N2MA 3BRZA 3LK42 4GCPA 3AAEA 4RLCA 4CTDA 2WVPA 2XTQA 3PGRA 3AA0B 2W80C 3HOEA 4FUVA 4UB8O 4AYDC 3KZIO 2XE2A 4JCHA 3G7GA 4E1SA 3QRAA 3RBHA 3AAAB 3LK2A 3VE2A 4AKRB 5G3AA
chains in the Genus database with same CATH topology
1ZHXA 2ERVA 2KXPA 4AYMC 2KDYA 4FRXA 4G75A 3FYXA 2MNHA 2XE3A 4N58A 3VZUX 3DA4A 3QRCA 1H6S1 3JTYA 4FMSA 2LFUA 1MM4A 3HWBA 4LSEA 1GFOA 5AFUK 3PORA 5GV0A 4QQ1A 4FSPA 4GCSA 3AA7B 3LK3A 3UAQA 4BUMX 1GFMA 2Y0LA 5JDPA 2PRNA 4O49A 1IZNB 6PRNA 2OMFA 2KZ7A 4O3ZA 5D5DA 1PRNA 3KVDD 4O4XA 1QJ8A 5FVNA 3A2SX 4FESA 5PRNA 3SZDA 4PUXA 2JMMA 3AA1A 3TZGA 4O4UA 1QJPA 2QTKA 4C69X 4O3XB 5IYUA 3SYSA 1THQA 4FOZA 2O4VA 3AA0A 4FSOA 1MPFA 4F4BA 4GF4A 3PRNA 4D64A 3SZVA 4RL9A 2FGQX 3AAAA 4KRAA 3SY7A 3T20A 4AKRA 5DL8A 3C5OA 3HOLA 3AA6B 3WI5A 4Z3TA 4AZLA 2XE5A 2M06A 2M07A 1HXTA 4FT6A 2YNKA 2J1NA 1OPFA 4GCQA 8PRNA 4AUIA 3NSGA 3AA7A 1Q9GA 1BT9A 2K0LA 1IZNA 3LK41 4KR8A 5EE2A 5DL6A 4JFBA 1GFNA 4AYID 4O3YA 2YPVA 2XMXA 2GE4A 2MHLA 4LSFA 2ODJA 4KR4A 3K19A 2Y0HA 3UU2A 1ORMA 7PRNA 1BXWA 4LSIA 3SY9A 4FZLA 1G90A 4FZMA 3O0EA 1OSMA 2W81C 3VE1A 1GFQA 2KC0A 3AA6A 3VY8X 3UPGA 4GHBA 4RLBA 3V8UA 2Y0KA 3GP6A 4G76A 3VY9X 2ZFGA 3POXA 5DL5A 1PHOA 3HW9A 4FZNA 2X27X 4AYEC 2XE1A 2F1TA 5T5FA 1YS5A 5ADXK 1QJ9A 2FGRA 2XTRA 1E54A 1GFPA 3AAEB 5G26A 2N2LA 2Y2XA 1BH3A 3DA3A 5ADXL 3LK2B 1ZHTA 3PQSA 1ZHWA 1HXXA 2PORA 3POUA 4RJXA 2KXPB 3VZWX 2ZLDA 4O3WA 3WI4A 4AKMA 1ZHZA 3VZTX 4FRTA 4D5UA 1MM5A 2F1VA 3PQUA 4U9CA 4XNKA 3SYBA 4XNLA 4E1TA 2Y7SA 2XG6A 4LSHA 2LHFA 2J4UP 3T24A 1Q9FA 4RJWA 3LK3B 4AFKA 3EMNX 1ZHYA 4D65A 3POQA 1P4TA 5AFUL 2KZ7B 5DL7A 4N59A 3T0SA 4B61A 2K4TA 3AA1B 1HXUA 2N2MA 3LK42 4GCPA 4RLCA 3AAEA 2XTQA 4AYNA 3AA0B 2W80C 3HOEA 4FUVA 4AYDC 2XE2A 4JCHA 3G7GA 4E1SA 3QRAA 3RBHA 3AAAB 3LK2A 3VE2A 4AKRB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM5 A;  2ERV A;  2F1V A;  3C5O A;  2MNH A;  3QRC A;  2LHF A;  1MM4 A;  2M06 A;  1Q9F A;  2M07 A;  3GP6 A;  1P4T A;  2X27 X;  2F1T A;  1Q9G A;  1QJ9 A;  2K0L A;  1QJ8 A;  2N2M A;  2N2L A;  4PUX A;  2JMM A;  4RLC A;  1QJP A;  2GE4 A;  2MHL A;  1THQ A;  3G7G A;  1ORM A;  3QRA A;  1BXW A;  1G90 A; 
#chains in the Genus database with same CATH topology
 1ZHX A;  2ERV A;  2KXP A;  4AYM C;  2KDY A;  2WJQ A;  4FRX A;  4G75 A;  4PR7 A;  3FYX A;  2MNH A;  2XE3 A;  4N58 A;  5GTI O;  3VZU X;  3DA4 A;  3QRC A;  1H6S 1;  4K3C A;  4C4V B;  3JTY A;  2R4O A;  2LFU A;  4FMS A;  1MM4 A;  3HWB A;  4LSE A;  1GFO A;  5AFU K;  3POR A;  5GV0 A;  2R4L A;  4QQ1 A;  4FSP A;  4GCS A;  2R8A A;  2R89 A;  3AA7 B;  3LK3 A;  3UAQ A;  4BUM X;  1GFM A;  2Y0L A;  5G38 A;  4N75 A;  2PRN A;  4O49 A;  1IZN B;  6PRN A;  2OMF A;  5JDP A;  2KZ7 A;  4O3Z A;  4N74 A;  5D5D A;  1PRN A;  3KVD D;  4O4X A;  1QJ8 A;  5FVN A;  3A2S X;  4FES A;  2F1C X;  5PRN A;  5E79 O;  4PUX A;  5KAI O;  2JMM A;  3AA1 A;  3DWO X;  4O4U A;  3TZG A;  1QJP A;  2QTK A;  4C69 X;  4O3X B;  5IYU A;  3SYS A;  1THQ A;  5TIS O;  4FOZ A;  2O4V A;  2R4N A;  3AA0 A;  1MPF A;  4FSO A;  4GF4 A;  4F4B A;  3PRN A;  4D64 A;  3SZV A;  4RL9 A;  2FGQ X;  3AAA A;  4KRA A;  3SY7 A;  3T20 A;  4AKR A;  5DL8 A;  3BS0 A;  3C5O A;  3HOL A;  3AA6 B;  3WI5 A;  4Z3T A;  4AZL A;  2XE5 A;  2M06 A;  4C4V A;  2M07 A;  1HXT A;  4FT6 A;  2YNK A;  4IL6 O;  2J1N A;  1OPF A;  4C00 A;  3A0H O;  3DZM A;  2X9K A;  4GCQ A;  8PRN A;  4AUI A;  3NSG A;  3AA7 A;  1T1L A;  3DWN A;  1Q9G A;  1BT9 A;  2K0L A;  1IZN A;  3LK4 1;  4KR8 A;  5EE2 A;  5DL6 A;  4AYN A;  4JFB A;  1GFN A;  4AYI D;  4O3Y A;  2IWW A;  2YPV A;  2XMX A;  2GE4 A;  2MHL A;  4LSF A;  2ODJ A;  5GTH O;  4KR4 A;  3K19 A;  2Y0H A;  3UU2 A;  1ORM A;  3BRY A;  3JCU O;  7PRN A;  1BXW A;  3PGU A;  4LSI A;  3SY9 A;  4FZL A;  1G90 A;  4FZM A;  3O0E A;  2R4P A;  1T16 A;  1OSM A;  2W81 C;  2WJR A;  3VE1 A;  1GFQ A;  2KC0 A;  3AA6 A;  3VY8 X;  5KAF O;  3UPG A;  4GHB A;  4RLB A;  3V8U A;  2Y0K A;  3GP6 A;  4G76 A;  3VY9 X;  2ZFG A;  3POX A;  2R88 A;  1PHO A;  3HW9 A;  4FZN A;  2X27 X;  5DL5 A;  2XE1 A;  3SZD A;  4AYE C;  2F1T A;  5T5F A;  1YS5 A;  5ADX K;  1QJ9 A;  2FGR A;  2XTR A;  1E54 A;  1GFP A;  3AAE B;  3NJT A;  4FQE A;  5G26 A;  3PF1 A;  2N2L A;  2Y2X A;  1BH3 A;  3DA3 A;  5ADX L;  3LK2 B;  1ZHT A;  3PQS A;  3WU2 O;  1ZHW A;  1HXX A;  2POR A;  3POU A;  4RJX A;  2KXP B;  3VZW X;  2ZLD A;  4O3W A;  4PJ0 O;  3WI4 A;  1ZHZ A;  3VZT X;  1S5L O;  4FRT A;  3PGS A;  4D5U A;  1MM5 A;  2F1V A;  3PQU A;  4U9C A;  4XNK A;  3SYB A;  4AKM A;  4XNL A;  3A0B O;  2Y7S A;  2XG6 A;  4E1T A;  4LSH A;  5B5E O;  2LHF A;  5G39 A;  3T24 A;  2J4U P;  1Q9F A;  4RJW A;  3LK3 B;  4AFK A;  3EMN X;  1ZHY A;  4D65 A;  3POQ A;  1P4T A;  4K3B A;  5AFU L;  4UB6 O;  2KZ7 B;  5DL7 A;  2IWV A;  4N59 A;  3T0S A;  4B61 A;  5B66 O;  2JQY A;  2AXT O;  2K4T A;  3AA1 B;  5H2F O;  1HXU A;  2N2M A;  3BRZ A;  3LK4 2;  4GCP A;  3AAE A;  4RLC A;  4CTD A;  2WVP A;  2XTQ A;  3PGR A;  3AA0 B;  2W80 C;  3HOE A;  4FUV A;  4UB8 O;  4AYD C;  3KZI O;  2XE2 A;  4JCH A;  3G7G A;  4E1S A;  3QRA A;  3RBH A;  3AAA B;  3LK2 A;  3VE2 A;  4AKR B;  5G3A A; 
#chains in the Genus database with same CATH homology
 1ZHX A;  2ERV A;  2KXP A;  4AYM C;  2KDY A;  4FRX A;  4G75 A;  3FYX A;  2MNH A;  2XE3 A;  4N58 A;  3VZU X;  3DA4 A;  3QRC A;  1H6S 1;  3JTY A;  4FMS A;  2LFU A;  1MM4 A;  3HWB A;  4LSE A;  1GFO A;  5AFU K;  3POR A;  5GV0 A;  4QQ1 A;  4FSP A;  4GCS A;  3AA7 B;  3LK3 A;  3UAQ A;  4BUM X;  1GFM A;  2Y0L A;  5JDP A;  2PRN A;  4O49 A;  1IZN B;  6PRN A;  2OMF A;  2KZ7 A;  4O3Z A;  5D5D A;  1PRN A;  3KVD D;  4O4X A;  1QJ8 A;  5FVN A;  3A2S X;  4FES A;  5PRN A;  3SZD A;  4PUX A;  2JMM A;  3AA1 A;  3TZG A;  4O4U A;  1QJP A;  2QTK A;  4C69 X;  4O3X B;  5IYU A;  3SYS A;  1THQ A;  4FOZ A;  2O4V A;  3AA0 A;  4FSO A;  1MPF A;  4F4B A;  4GF4 A;  3PRN A;  4D64 A;  3SZV A;  4RL9 A;  2FGQ X;  3AAA A;  4KRA A;  3SY7 A;  3T20 A;  4AKR A;  5DL8 A;  3C5O A;  3HOL A;  3AA6 B;  3WI5 A;  4Z3T A;  4AZL A;  2XE5 A;  2M06 A;  2M07 A;  1HXT A;  4FT6 A;  2YNK A;  2J1N A;  1OPF A;  4GCQ A;  8PRN A;  4AUI A;  3NSG A;  3AA7 A;  1Q9G A;  1BT9 A;  2K0L A;  1IZN A;  3LK4 1;  4KR8 A;  5EE2 A;  5DL6 A;  4JFB A;  1GFN A;  4AYI D;  4O3Y A;  2YPV A;  2XMX A;  2GE4 A;  2MHL A;  4LSF A;  2ODJ A;  4KR4 A;  3K19 A;  2Y0H A;  3UU2 A;  1ORM A;  7PRN A;  1BXW A;  4LSI A;  3SY9 A;  4FZL A;  1G90 A;  4FZM A;  3O0E A;  1OSM A;  2W81 C;  3VE1 A;  1GFQ A;  2KC0 A;  3AA6 A;  3VY8 X;  3UPG A;  4GHB A;  4RLB A;  3V8U A;  2Y0K A;  3GP6 A;  4G76 A;  3VY9 X;  2ZFG A;  3POX A;  5DL5 A;  1PHO A;  3HW9 A;  4FZN A;  2X27 X;  4AYE C;  2XE1 A;  2F1T A;  5T5F A;  1YS5 A;  5ADX K;  1QJ9 A;  2FGR A;  2XTR A;  1E54 A;  1GFP A;  3AAE B;  5G26 A;  2N2L A;  2Y2X A;  1BH3 A;  3DA3 A;  5ADX L;  3LK2 B;  1ZHT A;  3PQS A;  1ZHW A;  1HXX A;  2POR A;  3POU A;  4RJX A;  2KXP B;  3VZW X;  2ZLD A;  4O3W A;  3WI4 A;  4AKM A;  1ZHZ A;  3VZT X;  4FRT A;  4D5U A;  1MM5 A;  2F1V A;  3PQU A;  4U9C A;  4XNK A;  3SYB A;  4XNL A;  4E1T A;  2Y7S A;  2XG6 A;  4LSH A;  2LHF A;  2J4U P;  3T24 A;  1Q9F A;  4RJW A;  3LK3 B;  4AFK A;  3EMN X;  1ZHY A;  4D65 A;  3POQ A;  1P4T A;  5AFU L;  2KZ7 B;  5DL7 A;  4N59 A;  3T0S A;  4B61 A;  2K4T A;  3AA1 B;  1HXU A;  2N2M A;  3LK4 2;  4GCP A;  4RLC A;  3AAE A;  2XTQ A;  4AYN A;  3AA0 B;  2W80 C;  3HOE A;  4FUV A;  4AYD C;  2XE2 A;  4JCH A;  3G7G A;  4E1S A;  3QRA A;  3RBH A;  3AAA B;  3LK2 A;  3VE2 A;  4AKR B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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