1P4TA

Crystal structure of neisserial surface protein a (nspa)
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
155
structure length
155
Chain Sequence
b'EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Neisserial Surface Protein A (NspA), a conserved outer membrane protein with vaccine potential
pubmed doi rcsb
molecule keywords outer membrane protein NspA
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 40
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2003-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02462 Opacity Opacity family porin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1p4tA00
1ORMA 3GP6A 1G90A 2MNHA 1MM4A 2M06A 2M07A 2LHFA 1P4TA 3C5OA 2K0LA 1MM5A 2F1TA 1THQA 2MHLA 2N2LA 1Q9GA 2GE4A 1QJPA 2N2MA 4PUXA 1BXWA 3QRCA 3G7GA 3QRAA 1QJ9A 2X27X 1Q9FA 2JMMA 1QJ8A 2F1VA 2ERVA 4RLCA
chains in the Genus database with same CATH superfamily
4GF4A 2O4VA 2R88A 1G90A 2MNHA 4RLBA 2FGQX 4C69X 1HXXA 2LHFA 4UB6O 2J4UP 4N58A 3VY9X 1HXTA 2KZ7B 2K0LA 4GCPA 1GFOA 5KAIO 1IZNA 2J1NA 2W80C 4FT6A 4D65A 2XTRA 3RBHA 3VE2A 4AYEC 3A2SX 2MHLA 3A0HO 3AAEB 3LK2A 3HW9A 4FZLA 4G76A 4FZNA 4RL9A 4B61A 2PORA 2PRNA 4AFKA 2KDYA 2N2MA 4U9CA 3POQA 1IZNB 1OSMA 3SY7A 4CTDA 4XNLA 3BRYA 1QJ9A 3SY9A 4AKMA 2ODJA 3PF1A 4FMSA 3LK2B 2ZLDA 2K4TA 3SYBA 2X9KA 3SZDA 7PRNA 4O3YA 3VY8X 2JMMA 4O4UA 3HWBA 1ZHXA 1PHOA 3DWOX 5TISO 4N59A 3NSGA 4KR8A 2IWVA 4E1TA 3AA7B 4AZLA 4O49A 5PRNA 3AA1B 3AA6B 1ZHYA 1MM4A 3AAEA 2M06A 2M07A 2YPVA 3AA0A 3AAAB 4O4XA 4O3ZA 2KXPB 3C5OA 3O0EA 5E79O 3LK41 5IYUA 1MM5A 5JDPA 3BS0A 2XG6A 3PRNA 2XE5A 1PRNA 4AYDC 5B5EO 3UAQA 5ADXL 3KZIO 5GTIO 2N2LA 2XTQA 2GE4A 3T24A 1QJPA 4D5UA 5AFUK 2Y0KA 2Y0HA 3AA0B 1S5LO 3POXA 4LSFA 2WVPA 2XE1A 4PUXA 3T20A 1BXWA 1GFQA 1T1LA 4AYNA 3DZMA 3AA7A 3BRZA 3AA1A 3AA6A 4FUVA 2FGRA 2X27X 3A0BO 3AAAA 1Q9FA 2WJQA 2KXPA 1ZHTA 1GFPA 3JCUO 2AXTO 3LK3A 4FOZA 1ORMA 3T0SA 4LSEA 4N75A 4JCHA 3HOLA 3HOEA 3SYSA 5GTHO 3UU2A 1P4TA 1ZHWA 2WJRA 3DA4A 2XE3A 3PGSA 5T5FA 3WI4A 4N74A 2LFUA 3LK42 3LK3B 3PQSA 4K3BA 4O3XB 3WI5A 2Y0LA 2R4OA 4AUIA 4E1SA 2IWWA 3WU2O 1Q9GA 3TZGA 4FSOA 4C4VB 1GFMA 3JTYA 1MPFA 3K19A 3PORA 4RJXA 2R4NA 2JQYA 1GFNA 4LSHA 5FVNA 5G26A 2YNKA 5B66O 3FYXA 1H6S1 3QRCA 4C00A 5EE2A 2ZFGA 3G7GA 3VE1A 6PRNA 8PRNA 3VZTX 4G75A 4JFBA 4QQ1A 4FSPA 4FZMA 4D64A 2R4PA 3NJTA 4FRTA 2XE2A 3DWNA 4AYID 5DL6A 2ERVA 3PGRA 4GCSA 3GP6A 4KRAA 1BH3A 4O3WA 2KC0A 2XMXA 5DL5A 5G39A 4KR4A 2QTKA 5G3AA 4AKRA 5GV0A 2R8AA 4BUMX 1E54A 4C4VA 4FESA 4FQEA 5DL7A 2F1TA 4RJWA 1THQA 1YS5A 4GCQA 4PR7A 5ADXK 3PQUA 3V8UA 4LSIA 2Y7SA 4FRXA 3PGUA 3POUA 4F4BA 1BT9A 1T16A 3KVDD 5DL8A 3VZWX 4AKRB 1ZHZA 5AFUL 4K3CA 3UPGA 2OMFA 3QRAA 5H2FO 2F1CX 4UB8O 4IL6O 1HXUA 5D5DA 4PJ0O 3VZUX 1OPFA 4AYMC 3DA3A 2R89A 2R4LA 4XNKA 2KZ7A 4GHBA 2Y2XA 5G38A 5KAFO 2W81C 3EMNX 1QJ8A 2F1VA 4Z3TA 3SZVA 4RLCA
chains in the Genus database with same CATH topology
4GF4A 2O4VA 1G90A 2MNHA 4RLBA 2FGQX 4C69X 1HXXA 2LHFA 2J4UP 4N58A 3VY9X 1HXTA 2KZ7B 2K0LA 4GCPA 1GFOA 1IZNA 2J1NA 2W80C 4FT6A 4D65A 2XTRA 3RBHA 3VE2A 4AYEC 3A2SX 2MHLA 3LK2A 3AAEB 4FZLA 3HW9A 4G76A 4RL9A 4FZNA 4AYDC 2PORA 2PRNA 4AFKA 2KDYA 2N2MA 4U9CA 3POQA 1IZNB 1OSMA 3SY7A 4XNLA 1QJ9A 3SY9A 4AKMA 2ODJA 4FMSA 3SYBA 3LK2B 2ZLDA 2K4TA 3SZDA 7PRNA 4O3YA 3VY8X 2JMMA 4O4UA 3HWBA 1ZHXA 1PHOA 4N59A 3NSGA 4KR8A 4E1TA 3AA7B 4AZLA 4O49A 5PRNA 3AA1B 3AA6B 1ZHYA 1MM4A 3AAEA 2M06A 2M07A 2YPVA 3AA0A 3AAAB 4O4XA 4O3ZA 2KXPB 3C5OA 3O0EA 5IYUA 3LK41 5JDPA 1MM5A 3PRNA 2XG6A 2XE5A 1PRNA 3UAQA 5ADXL 2N2LA 2XTQA 2GE4A 3T24A 1QJPA 4D5UA 5AFUK 2Y0KA 2Y0HA 3AA0B 3POXA 4LSFA 2XE1A 4PUXA 3T20A 1BXWA 1GFQA 4AYNA 3AA7A 4FUVA 3AA1A 3AA6A 2FGRA 2X27X 3AAAA 1Q9FA 2KXPA 1ZHTA 1GFPA 3LK3A 4FOZA 1ORMA 3T0SA 4LSEA 4JCHA 3HOLA 3HOEA 3SYSA 3UU2A 1P4TA 1ZHWA 3DA4A 2XE3A 5T5FA 3WI4A 2LFUA 3LK42 3LK3B 3PQSA 4O3XB 3WI5A 4E1SA 2Y0LA 4AUIA 1Q9GA 3TZGA 4FSOA 1GFMA 3JTYA 1MPFA 3K19A 3PORA 4RJXA 5G26A 1GFNA 4LSHA 5FVNA 2YNKA 3FYXA 1H6S1 3QRCA 5EE2A 2ZFGA 3G7GA 3VE1A 6PRNA 8PRNA 3VZTX 4G75A 4JFBA 4QQ1A 4FSPA 4FZMA 4D64A 4FRTA 2XE2A 4AYID 5DL6A 2ERVA 4GCSA 3GP6A 4KRAA 1BH3A 4O3WA 2KC0A 2XMXA 5DL5A 4KR4A 2QTKA 4AKRA 5GV0A 4BUMX 1E54A 4FESA 5DL7A 2F1TA 4RJWA 1THQA 1YS5A 4GCQA 5ADXK 3PQUA 3V8UA 4LSIA 2Y7SA 4FRXA 4F4BA 3POUA 1BT9A 3KVDD 5DL8A 3VZWX 4AKRB 1ZHZA 5AFUL 3UPGA 2OMFA 3QRAA 1HXUA 5D5DA 3VZUX 1OPFA 4AYMC 3DA3A 4XNKA 4B61A 2KZ7A 4GHBA 2Y2XA 2W81C 3EMNX 1QJ8A 2F1VA 4Z3TA 3SZVA 4RLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ORM A;  3GP6 A;  1G90 A;  2MNH A;  1MM4 A;  2M06 A;  2M07 A;  2LHF A;  1P4T A;  3C5O A;  2K0L A;  1MM5 A;  2F1T A;  1THQ A;  2MHL A;  2N2L A;  1Q9G A;  2GE4 A;  1QJP A;  2N2M A;  4PUX A;  1BXW A;  3QRC A;  3G7G A;  3QRA A;  1QJ9 A;  2X27 X;  1Q9F A;  2JMM A;  1QJ8 A;  2F1V A;  2ERV A;  4RLC A; 
#chains in the Genus database with same CATH topology
 4GF4 A;  2O4V A;  2R88 A;  1G90 A;  2MNH A;  4RLB A;  2FGQ X;  4C69 X;  1HXX A;  2LHF A;  4UB6 O;  2J4U P;  4N58 A;  3VY9 X;  1HXT A;  2KZ7 B;  2K0L A;  4GCP A;  1GFO A;  5KAI O;  1IZN A;  2J1N A;  2W80 C;  4FT6 A;  4D65 A;  2XTR A;  3RBH A;  3VE2 A;  4AYE C;  3A2S X;  2MHL A;  3A0H O;  3AAE B;  3LK2 A;  3HW9 A;  4FZL A;  4G76 A;  4FZN A;  4RL9 A;  4B61 A;  2POR A;  2PRN A;  4AFK A;  2KDY A;  2N2M A;  4U9C A;  3POQ A;  1IZN B;  1OSM A;  3SY7 A;  4CTD A;  4XNL A;  3BRY A;  1QJ9 A;  3SY9 A;  4AKM A;  2ODJ A;  3PF1 A;  4FMS A;  3LK2 B;  2ZLD A;  2K4T A;  3SYB A;  2X9K A;  3SZD A;  7PRN A;  4O3Y A;  3VY8 X;  2JMM A;  4O4U A;  3HWB A;  1ZHX A;  1PHO A;  3DWO X;  5TIS O;  4N59 A;  3NSG A;  4KR8 A;  2IWV A;  4E1T A;  3AA7 B;  4AZL A;  4O49 A;  5PRN A;  3AA1 B;  3AA6 B;  1ZHY A;  1MM4 A;  3AAE A;  2M06 A;  2M07 A;  2YPV A;  3AA0 A;  3AAA B;  4O4X A;  4O3Z A;  2KXP B;  3C5O A;  3O0E A;  5E79 O;  3LK4 1;  5IYU A;  1MM5 A;  5JDP A;  3BS0 A;  2XG6 A;  3PRN A;  2XE5 A;  1PRN A;  4AYD C;  5B5E O;  3UAQ A;  5ADX L;  3KZI O;  5GTI O;  2N2L A;  2XTQ A;  2GE4 A;  3T24 A;  1QJP A;  4D5U A;  5AFU K;  2Y0K A;  2Y0H A;  3AA0 B;  1S5L O;  3POX A;  4LSF A;  2WVP A;  2XE1 A;  4PUX A;  3T20 A;  1BXW A;  1GFQ A;  1T1L A;  4AYN A;  3DZM A;  3AA7 A;  3BRZ A;  3AA1 A;  3AA6 A;  4FUV A;  2FGR A;  2X27 X;  3A0B O;  3AAA A;  1Q9F A;  2WJQ A;  2KXP A;  1ZHT A;  1GFP A;  3JCU O;  2AXT O;  3LK3 A;  4FOZ A;  1ORM A;  3T0S A;  4LSE A;  4N75 A;  4JCH A;  3HOL A;  3HOE A;  3SYS A;  5GTH O;  3UU2 A;  1P4T A;  1ZHW A;  2WJR A;  3DA4 A;  2XE3 A;  3PGS A;  5T5F A;  3WI4 A;  4N74 A;  2LFU A;  3LK4 2;  3LK3 B;  3PQS A;  4K3B A;  4O3X B;  3WI5 A;  2Y0L A;  2R4O A;  4AUI A;  4E1S A;  2IWW A;  3WU2 O;  1Q9G A;  3TZG A;  4FSO A;  4C4V B;  1GFM A;  3JTY A;  1MPF A;  3K19 A;  3POR A;  4RJX A;  2R4N A;  2JQY A;  1GFN A;  4LSH A;  5FVN A;  5G26 A;  2YNK A;  5B66 O;  3FYX A;  1H6S 1;  3QRC A;  4C00 A;  5EE2 A;  2ZFG A;  3G7G A;  3VE1 A;  6PRN A;  8PRN A;  3VZT X;  4G75 A;  4JFB A;  4QQ1 A;  4FSP A;  4FZM A;  4D64 A;  2R4P A;  3NJT A;  4FRT A;  2XE2 A;  3DWN A;  4AYI D;  5DL6 A;  2ERV A;  3PGR A;  4GCS A;  3GP6 A;  4KRA A;  1BH3 A;  4O3W A;  2KC0 A;  2XMX A;  5DL5 A;  5G39 A;  4KR4 A;  2QTK A;  5G3A A;  4AKR A;  5GV0 A;  2R8A A;  4BUM X;  1E54 A;  4C4V A;  4FES A;  4FQE A;  5DL7 A;  2F1T A;  4RJW A;  1THQ A;  1YS5 A;  4GCQ A;  4PR7 A;  5ADX K;  3PQU A;  3V8U A;  4LSI A;  2Y7S A;  4FRX A;  3PGU A;  3POU A;  4F4B A;  1BT9 A;  1T16 A;  3KVD D;  5DL8 A;  3VZW X;  4AKR B;  1ZHZ A;  5AFU L;  4K3C A;  3UPG A;  2OMF A;  3QRA A;  5H2F O;  2F1C X;  4UB8 O;  4IL6 O;  1HXU A;  5D5D A;  4PJ0 O;  3VZU X;  1OPF A;  4AYM C;  3DA3 A;  2R89 A;  2R4L A;  4XNK A;  2KZ7 A;  4GHB A;  2Y2X A;  5G38 A;  5KAF O;  2W81 C;  3EMN X;  1QJ8 A;  2F1V A;  4Z3T A;  3SZV A;  4RLC A; 
#chains in the Genus database with same CATH homology
 4GF4 A;  2O4V A;  1G90 A;  2MNH A;  4RLB A;  2FGQ X;  4C69 X;  1HXX A;  2LHF A;  2J4U P;  4N58 A;  3VY9 X;  1HXT A;  2KZ7 B;  2K0L A;  4GCP A;  1GFO A;  1IZN A;  2J1N A;  2W80 C;  4FT6 A;  4D65 A;  2XTR A;  3RBH A;  3VE2 A;  4AYE C;  3A2S X;  2MHL A;  3LK2 A;  3AAE B;  4FZL A;  3HW9 A;  4G76 A;  4RL9 A;  4FZN A;  4AYD C;  2POR A;  2PRN A;  4AFK A;  2KDY A;  2N2M A;  4U9C A;  3POQ A;  1IZN B;  1OSM A;  3SY7 A;  4XNL A;  1QJ9 A;  3SY9 A;  4AKM A;  2ODJ A;  4FMS A;  3SYB A;  3LK2 B;  2ZLD A;  2K4T A;  3SZD A;  7PRN A;  4O3Y A;  3VY8 X;  2JMM A;  4O4U A;  3HWB A;  1ZHX A;  1PHO A;  4N59 A;  3NSG A;  4KR8 A;  4E1T A;  3AA7 B;  4AZL A;  4O49 A;  5PRN A;  3AA1 B;  3AA6 B;  1ZHY A;  1MM4 A;  3AAE A;  2M06 A;  2M07 A;  2YPV A;  3AA0 A;  3AAA B;  4O4X A;  4O3Z A;  2KXP B;  3C5O A;  3O0E A;  5IYU A;  3LK4 1;  5JDP A;  1MM5 A;  3PRN A;  2XG6 A;  2XE5 A;  1PRN A;  3UAQ A;  5ADX L;  2N2L A;  2XTQ A;  2GE4 A;  3T24 A;  1QJP A;  4D5U A;  5AFU K;  2Y0K A;  2Y0H A;  3AA0 B;  3POX A;  4LSF A;  2XE1 A;  4PUX A;  3T20 A;  1BXW A;  1GFQ A;  4AYN A;  3AA7 A;  4FUV A;  3AA1 A;  3AA6 A;  2FGR A;  2X27 X;  3AAA A;  1Q9F A;  2KXP A;  1ZHT A;  1GFP A;  3LK3 A;  4FOZ A;  1ORM A;  3T0S A;  4LSE A;  4JCH A;  3HOL A;  3HOE A;  3SYS A;  3UU2 A;  1P4T A;  1ZHW A;  3DA4 A;  2XE3 A;  5T5F A;  3WI4 A;  2LFU A;  3LK4 2;  3LK3 B;  3PQS A;  4O3X B;  3WI5 A;  4E1S A;  2Y0L A;  4AUI A;  1Q9G A;  3TZG A;  4FSO A;  1GFM A;  3JTY A;  1MPF A;  3K19 A;  3POR A;  4RJX A;  5G26 A;  1GFN A;  4LSH A;  5FVN A;  2YNK A;  3FYX A;  1H6S 1;  3QRC A;  5EE2 A;  2ZFG A;  3G7G A;  3VE1 A;  6PRN A;  8PRN A;  3VZT X;  4G75 A;  4JFB A;  4QQ1 A;  4FSP A;  4FZM A;  4D64 A;  4FRT A;  2XE2 A;  4AYI D;  5DL6 A;  2ERV A;  4GCS A;  3GP6 A;  4KRA A;  1BH3 A;  4O3W A;  2KC0 A;  2XMX A;  5DL5 A;  4KR4 A;  2QTK A;  4AKR A;  5GV0 A;  4BUM X;  1E54 A;  4FES A;  5DL7 A;  2F1T A;  4RJW A;  1THQ A;  1YS5 A;  4GCQ A;  5ADX K;  3PQU A;  3V8U A;  4LSI A;  2Y7S A;  4FRX A;  4F4B A;  3POU A;  1BT9 A;  3KVD D;  5DL8 A;  3VZW X;  4AKR B;  1ZHZ A;  5AFU L;  3UPG A;  2OMF A;  3QRA A;  1HXU A;  5D5D A;  3VZU X;  1OPF A;  4AYM C;  3DA3 A;  4XNK A;  4B61 A;  2KZ7 A;  4GHB A;  2Y2X A;  2W81 C;  3EMN X;  1QJ8 A;  2F1V A;  4Z3T A;  3SZV A;  4RLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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