3EMNX

The crystal structure of mouse vdac1 at 2.3 a resolution
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Voltage-dependent anion-selective channel protein 1
publication title The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating
pubmed doi rcsb
source organism Mus musculus
total genus 63
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2008-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3emnX00
1BH3A 3PRNA 2XE3A 7PRNA 3SYSA 4FT6A 4GCQA 3VZTX 1E54A 1HXXA 4GCSA 4D64A 2Y0KA 3VY8X 2XE5A 2J4UP 1HXUA 8PRNA 3HWBA 4LSEA 3EMNX 4RJXA 4BUMX 3WI5A 4FOZA 2PRNA 3POXA 4FSOA 3WI4A 1BT9A 4LSFA 4C69X 4D65A 2ODJA 3POQA 3SYBA 4D5UA 3UPGA 3SZVA 4FRXA 2O4VA 4AUIA 1GFNA 5DL6A 2OMFA 5DL5A 3T24A 4FSPA 3VZWX 1GFOA 2XE2A 3VY9X 1PHOA 1PRNA 4LSHA 4JFBA 1OPFA 2QTKA 1GFPA 2ZFGA 1MPFA 6PRNA 1GFMA 3VZUX 2XE1A 2PORA 3SY7A 3POUA 3T0SA 4KR8A 5DL8A 3FYXA 3PORA 2Y0LA 2ZLDA 3A2SX 5DL7A 1GFQA 2K4TA 1H6S1 3SZDA 5FVNA 1OSMA 1HXTA 4FRTA 2Y2XA 4KR4A 3NSGA 2Y0HA 4KRAA 2FGRA 4GCPA 3SY9A 3O0EA 3HW9A 2XG6A 5JDPA 4RJWA 3K19A 2J1NA 5PRNA 3JTYA 3UU2A 4FMSA 2FGQX 3T20A 4LSIA
chains in the Genus database with same CATH superfamily
2WJRA 4E1TA 1BH3A 1BXWA 3PRNA 3C5OA 2XE3A 7PRNA 1QJ8A 2X27X 1IZNB 3SYSA 5H2FO 5G3AA 3BRZA 2YNKA 4C4VB 1Q9GA 2KZ7A 3DA4A 2AXTO 3AAAB 2X9KA 4FT6A 3PGUA 4GCQA 5G26A 3VZTX 3LK3A 3AA6B 4FZNA 1E54A 1T1LA 1HXXA 5D5DA 2LHFA 4GCSA 4AZLA 4D64A 4N59A 2WVPA 2Y0KA 1ZHXA 3VY8X 4B61A 2MNHA 2XE5A 3HOEA 4AKRA 2R4LA 2J4UP 1HXUA 3LK2A 8PRNA 3HWBA 4LSEA 3EMNX 4RJXA 4BUMX 5B5EO 4PR7A 4K3BA 4RLCA 3WI5A 4FOZA 2PRNA 3AA0B 3VE1A 1MM4A 2N2LA 3PF1A 2F1VA 3POXA 2ERVA 4FSOA 4N75A 3WI4A 1BT9A 1QJ9A 2R4PA 4LSFA 4C69X 4FZMA 4N74A 4D65A 4IL6O 2ODJA 2KXPA 3NJTA 3POQA 4F4BA 4U9CA 2XTQA 3PGSA 4G76A 3SYBA 4D5UA 3SZVA 5IYUA 3UPGA 2R8AA 4FRXA 2O4VA 4FUVA 5GTIO 4AUIA 1GFNA 5DL6A 3GP6A 2OMFA 2XMXA 3LK42 3TZGA 5DL5A 4O3YA 4AKMA 2F1TA 4UB6O 3T24A 4FSPA 3VZWX 4GHBA 2Y7SA 1GFOA 5E79O 2XE2A 3VY9X 4Z3TA 1PHOA 3AAEB 4AYMC 1PRNA 1QJPA 3AA1A 3LK41 4G75A 4LSHA 1T16A 4JFBA 4RLBA 1OPFA 2F1CX 2QTKA 1GFPA 2ZFGA 1MPFA 5B66O 6PRNA 2KC0A 1ORMA 1GFMA 3AA7B 3BS0A 3HOLA 3VZUX 4O3XB 2R89A 1IZNA 1THQA 4AYID 2LFUA 2XE1A 4C4VA 3VE2A 2PORA 4AYDC 3AAAA 2K0LA 3SY7A 3POUA 3T0SA 4KR8A 5DL8A 5GTHO 3UAQA 1ZHYA 3AA6A 3V8UA 4PJ0O 3FYXA 4CTDA 3RBHA 5EE2A 3BRYA 2KDYA 3PORA 1MM5A 3A0HO 2MHLA 3DA3A 4XNLA 2Y0LA 2IWVA 3WU2O 2ZLDA 3DZMA 2KZ7B 3A2SX 5DL7A 4O3ZA 5G38A 1GFQA 1G90A 2K4TA 3LK3B 4O4XA 1H6S1 3QRCA 3SZDA 5FVNA 3PQUA 3AA0A 4C00A 1YS5A 1Q9FA 3DWOX 5AFUK 1ZHZA 3QRAA 2GE4A 1OSMA 2R4NA 4FQEA 1HXTA 5TISO 2WJQA 4AFKA 4FZLA 4FRTA 4PUXA 4O49A 2Y2XA 4KR4A 3NSGA 4AKRB 1P4TA 2XTRA 2Y0HA 2IWWA 4KRAA 4RL9A 3LK2B 2FGRA 5ADXK 3JCUO 2N2MA 4FESA 2M07A 4GCPA 4AYNA 4JCHA 5KAFO 3SY9A 2W81C 4GF4A 2W80C 5T5FA 3O0EA 2JMMA 3AAEA 5AFUL 3PQSA 4O4UA 3A0BO 3HW9A 1ZHTA 2KXPB 2YPVA 3DWNA 4XNKA 2XG6A 3G7GA 4N58A 4K3CA 3AA7A 1ZHWA 4QQ1A 5KAIO 5ADXL 1S5LO 4E1SA 5JDPA 3KVDD 4RJWA 3K19A 2J1NA 4UB8O 5G39A 2R4OA 5PRNA 3JTYA 3UU2A 2M06A 2R88A 3PGRA 4FMSA 3AA1B 4O3WA 3KZIO 2FGQX 5GV0A 3T20A 4LSIA 2JQYA 4AYEC
chains in the Genus database with same CATH topology
4E1TA 1BH3A 1BXWA 3PRNA 3C5OA 2XE3A 7PRNA 1QJ8A 2X27X 1IZNB 3SYSA 2YNKA 1Q9GA 2KZ7A 3DA4A 3AAAB 4FT6A 4GCQA 5G26A 3VZTX 3LK3A 3AA6B 4FZNA 1E54A 1HXXA 5D5DA 2LHFA 4GCSA 4AZLA 4D64A 4N59A 2Y0KA 1ZHXA 3VY8X 4B61A 2MNHA 2XE5A 3HOEA 4AKRA 2J4UP 1HXUA 3LK2A 8PRNA 3HWBA 4LSEA 3EMNX 4RJXA 4BUMX 4RLCA 3WI5A 4FOZA 2PRNA 3AA0B 3VE1A 1MM4A 2N2LA 3POXA 2F1VA 4FSOA 2ERVA 3WI4A 1BT9A 1QJ9A 4LSFA 4C69X 4FZMA 4D65A 2ODJA 2KXPA 3POQA 4F4BA 4U9CA 2XTQA 3SYBA 4G76A 4D5UA 5IYUA 3SZVA 3UPGA 4FRXA 2O4VA 4FUVA 4AUIA 1GFNA 5DL6A 3GP6A 2OMFA 2XMXA 3LK42 3TZGA 5DL5A 4O3YA 4AKMA 2F1TA 3T24A 4FSPA 3VZWX 4GHBA 2Y7SA 1GFOA 2XE2A 3VY9X 4Z3TA 1PHOA 3AAEB 4AYMC 1PRNA 1QJPA 3AA1A 3LK41 4G75A 4LSHA 4JFBA 4RLBA 1OPFA 2QTKA 1GFPA 2ZFGA 1MPFA 6PRNA 2KC0A 1ORMA 1GFMA 3AA7B 3HOLA 3VZUX 4O3XB 1IZNA 1THQA 4AYID 2LFUA 2XE1A 3VE2A 2PORA 4AYDC 3AAAA 2K0LA 3SY7A 3POUA 3T0SA 4KR8A 5DL8A 3UAQA 1ZHYA 3AA6A 3V8UA 3FYXA 3RBHA 5EE2A 2KDYA 3PORA 1MM5A 3DA3A 2MHLA 4XNLA 2Y0LA 2ZLDA 2KZ7B 3A2SX 5DL7A 4O3ZA 1GFQA 1G90A 2K4TA 3LK3B 4O4XA 1H6S1 3QRCA 3SZDA 5FVNA 3PQUA 3AA0A 1YS5A 1Q9FA 5AFUK 1ZHZA 3QRAA 2GE4A 1OSMA 4AFKA 1HXTA 4FZLA 4FRTA 4PUXA 4O49A 2Y2XA 4KR4A 3NSGA 4AKRB 2XTRA 1P4TA 2Y0HA 4KRAA 4RL9A 3LK2B 2FGRA 5ADXK 2N2MA 4FESA 2M07A 4GCPA 4AYNA 4JCHA 3SY9A 2W81C 4GF4A 2W80C 5T5FA 3O0EA 2JMMA 3AAEA 5AFUL 3PQSA 4O4UA 3HW9A 1ZHTA 2KXPB 2YPVA 4XNKA 2XG6A 3G7GA 4N58A 3AA7A 1ZHWA 4QQ1A 5ADXL 4E1SA 5JDPA 3KVDD 4RJWA 3K19A 2J1NA 5PRNA 3JTYA 3UU2A 2M06A 4FMSA 3AA1B 4O3WA 2FGQX 5GV0A 3T20A 4LSIA 4AYEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BH3 A;  3PRN A;  2XE3 A;  7PRN A;  3SYS A;  4FT6 A;  4GCQ A;  3VZT X;  1E54 A;  1HXX A;  4GCS A;  4D64 A;  2Y0K A;  3VY8 X;  2XE5 A;  2J4U P;  1HXU A;  8PRN A;  3HWB A;  4LSE A;  3EMN X;  4RJX A;  4BUM X;  3WI5 A;  4FOZ A;  2PRN A;  3POX A;  4FSO A;  3WI4 A;  1BT9 A;  4LSF A;  4C69 X;  4D65 A;  2ODJ A;  3POQ A;  3SYB A;  4D5U A;  3UPG A;  3SZV A;  4FRX A;  2O4V A;  4AUI A;  1GFN A;  5DL6 A;  2OMF A;  5DL5 A;  3T24 A;  4FSP A;  3VZW X;  1GFO A;  2XE2 A;  3VY9 X;  1PHO A;  1PRN A;  4LSH A;  4JFB A;  1OPF A;  2QTK A;  1GFP A;  2ZFG A;  1MPF A;  6PRN A;  1GFM A;  3VZU X;  2XE1 A;  2POR A;  3SY7 A;  3POU A;  3T0S A;  4KR8 A;  5DL8 A;  3FYX A;  3POR A;  2Y0L A;  2ZLD A;  3A2S X;  5DL7 A;  1GFQ A;  2K4T A;  1H6S 1;  3SZD A;  5FVN A;  1OSM A;  1HXT A;  4FRT A;  2Y2X A;  4KR4 A;  3NSG A;  2Y0H A;  4KRA A;  2FGR A;  4GCP A;  3SY9 A;  3O0E A;  3HW9 A;  2XG6 A;  5JDP A;  4RJW A;  3K19 A;  2J1N A;  5PRN A;  3JTY A;  3UU2 A;  4FMS A;  2FGQ X;  3T20 A;  4LSI A; 
#chains in the Genus database with same CATH topology
 2WJR A;  4E1T A;  1BH3 A;  1BXW A;  3PRN A;  3C5O A;  2XE3 A;  7PRN A;  1QJ8 A;  2X27 X;  1IZN B;  3SYS A;  5H2F O;  5G3A A;  3BRZ A;  2YNK A;  4C4V B;  1Q9G A;  2KZ7 A;  3DA4 A;  2AXT O;  3AAA B;  2X9K A;  4FT6 A;  3PGU A;  4GCQ A;  5G26 A;  3VZT X;  3LK3 A;  3AA6 B;  4FZN A;  1E54 A;  1T1L A;  1HXX A;  5D5D A;  2LHF A;  4GCS A;  4AZL A;  4D64 A;  4N59 A;  2WVP A;  2Y0K A;  1ZHX A;  3VY8 X;  4B61 A;  2MNH A;  2XE5 A;  3HOE A;  4AKR A;  2R4L A;  2J4U P;  1HXU A;  3LK2 A;  8PRN A;  3HWB A;  4LSE A;  3EMN X;  4RJX A;  4BUM X;  5B5E O;  4PR7 A;  4K3B A;  4RLC A;  3WI5 A;  4FOZ A;  2PRN A;  3AA0 B;  3VE1 A;  1MM4 A;  2N2L A;  3PF1 A;  2F1V A;  3POX A;  2ERV A;  4FSO A;  4N75 A;  3WI4 A;  1BT9 A;  1QJ9 A;  2R4P A;  4LSF A;  4C69 X;  4FZM A;  4N74 A;  4D65 A;  4IL6 O;  2ODJ A;  2KXP A;  3NJT A;  3POQ A;  4F4B A;  4U9C A;  2XTQ A;  3PGS A;  4G76 A;  3SYB A;  4D5U A;  3SZV A;  5IYU A;  3UPG A;  2R8A A;  4FRX A;  2O4V A;  4FUV A;  5GTI O;  4AUI A;  1GFN A;  5DL6 A;  3GP6 A;  2OMF A;  2XMX A;  3LK4 2;  3TZG A;  5DL5 A;  4O3Y A;  4AKM A;  2F1T A;  4UB6 O;  3T24 A;  4FSP A;  3VZW X;  4GHB A;  2Y7S A;  1GFO A;  5E79 O;  2XE2 A;  3VY9 X;  4Z3T A;  1PHO A;  3AAE B;  4AYM C;  1PRN A;  1QJP A;  3AA1 A;  3LK4 1;  4G75 A;  4LSH A;  1T16 A;  4JFB A;  4RLB A;  1OPF A;  2F1C X;  2QTK A;  1GFP A;  2ZFG A;  1MPF A;  5B66 O;  6PRN A;  2KC0 A;  1ORM A;  1GFM A;  3AA7 B;  3BS0 A;  3HOL A;  3VZU X;  4O3X B;  2R89 A;  1IZN A;  1THQ A;  4AYI D;  2LFU A;  2XE1 A;  4C4V A;  3VE2 A;  2POR A;  4AYD C;  3AAA A;  2K0L A;  3SY7 A;  3POU A;  3T0S A;  4KR8 A;  5DL8 A;  5GTH O;  3UAQ A;  1ZHY A;  3AA6 A;  3V8U A;  4PJ0 O;  3FYX A;  4CTD A;  3RBH A;  5EE2 A;  3BRY A;  2KDY A;  3POR A;  1MM5 A;  3A0H O;  2MHL A;  3DA3 A;  4XNL A;  2Y0L A;  2IWV A;  3WU2 O;  2ZLD A;  3DZM A;  2KZ7 B;  3A2S X;  5DL7 A;  4O3Z A;  5G38 A;  1GFQ A;  1G90 A;  2K4T A;  3LK3 B;  4O4X A;  1H6S 1;  3QRC A;  3SZD A;  5FVN A;  3PQU A;  3AA0 A;  4C00 A;  1YS5 A;  1Q9F A;  3DWO X;  5AFU K;  1ZHZ A;  3QRA A;  2GE4 A;  1OSM A;  2R4N A;  4FQE A;  1HXT A;  5TIS O;  2WJQ A;  4AFK A;  4FZL A;  4FRT A;  4PUX A;  4O49 A;  2Y2X A;  4KR4 A;  3NSG A;  4AKR B;  1P4T A;  2XTR A;  2Y0H A;  2IWW A;  4KRA A;  4RL9 A;  3LK2 B;  2FGR A;  5ADX K;  3JCU O;  2N2M A;  4FES A;  2M07 A;  4GCP A;  4AYN A;  4JCH A;  5KAF O;  3SY9 A;  2W81 C;  4GF4 A;  2W80 C;  5T5F A;  3O0E A;  2JMM A;  3AAE A;  5AFU L;  3PQS A;  4O4U A;  3A0B O;  3HW9 A;  1ZHT A;  2KXP B;  2YPV A;  3DWN A;  4XNK A;  2XG6 A;  3G7G A;  4N58 A;  4K3C A;  3AA7 A;  1ZHW A;  4QQ1 A;  5KAI O;  5ADX L;  1S5L O;  4E1S A;  5JDP A;  3KVD D;  4RJW A;  3K19 A;  2J1N A;  4UB8 O;  5G39 A;  2R4O A;  5PRN A;  3JTY A;  3UU2 A;  2M06 A;  2R88 A;  3PGR A;  4FMS A;  3AA1 B;  4O3W A;  3KZI O;  2FGQ X;  5GV0 A;  3T20 A;  4LSI A;  2JQY A;  4AYE C; 
#chains in the Genus database with same CATH homology
 4E1T A;  1BH3 A;  1BXW A;  3PRN A;  3C5O A;  2XE3 A;  7PRN A;  1QJ8 A;  2X27 X;  1IZN B;  3SYS A;  2YNK A;  1Q9G A;  2KZ7 A;  3DA4 A;  3AAA B;  4FT6 A;  4GCQ A;  5G26 A;  3VZT X;  3LK3 A;  3AA6 B;  4FZN A;  1E54 A;  1HXX A;  5D5D A;  2LHF A;  4GCS A;  4AZL A;  4D64 A;  4N59 A;  2Y0K A;  1ZHX A;  3VY8 X;  4B61 A;  2MNH A;  2XE5 A;  3HOE A;  4AKR A;  2J4U P;  1HXU A;  3LK2 A;  8PRN A;  3HWB A;  4LSE A;  3EMN X;  4RJX A;  4BUM X;  4RLC A;  3WI5 A;  4FOZ A;  2PRN A;  3AA0 B;  3VE1 A;  1MM4 A;  2N2L A;  3POX A;  2F1V A;  4FSO A;  2ERV A;  3WI4 A;  1BT9 A;  1QJ9 A;  4LSF A;  4C69 X;  4FZM A;  4D65 A;  2ODJ A;  2KXP A;  3POQ A;  4F4B A;  4U9C A;  2XTQ A;  3SYB A;  4G76 A;  4D5U A;  5IYU A;  3SZV A;  3UPG A;  4FRX A;  2O4V A;  4FUV A;  4AUI A;  1GFN A;  5DL6 A;  3GP6 A;  2OMF A;  2XMX A;  3LK4 2;  3TZG A;  5DL5 A;  4O3Y A;  4AKM A;  2F1T A;  3T24 A;  4FSP A;  3VZW X;  4GHB A;  2Y7S A;  1GFO A;  2XE2 A;  3VY9 X;  4Z3T A;  1PHO A;  3AAE B;  4AYM C;  1PRN A;  1QJP A;  3AA1 A;  3LK4 1;  4G75 A;  4LSH A;  4JFB A;  4RLB A;  1OPF A;  2QTK A;  1GFP A;  2ZFG A;  1MPF A;  6PRN A;  2KC0 A;  1ORM A;  1GFM A;  3AA7 B;  3HOL A;  3VZU X;  4O3X B;  1IZN A;  1THQ A;  4AYI D;  2LFU A;  2XE1 A;  3VE2 A;  2POR A;  4AYD C;  3AAA A;  2K0L A;  3SY7 A;  3POU A;  3T0S A;  4KR8 A;  5DL8 A;  3UAQ A;  1ZHY A;  3AA6 A;  3V8U A;  3FYX A;  3RBH A;  5EE2 A;  2KDY A;  3POR A;  1MM5 A;  3DA3 A;  2MHL A;  4XNL A;  2Y0L A;  2ZLD A;  2KZ7 B;  3A2S X;  5DL7 A;  4O3Z A;  1GFQ A;  1G90 A;  2K4T A;  3LK3 B;  4O4X A;  1H6S 1;  3QRC A;  3SZD A;  5FVN A;  3PQU A;  3AA0 A;  1YS5 A;  1Q9F A;  5AFU K;  1ZHZ A;  3QRA A;  2GE4 A;  1OSM A;  4AFK A;  1HXT A;  4FZL A;  4FRT A;  4PUX A;  4O49 A;  2Y2X A;  4KR4 A;  3NSG A;  4AKR B;  2XTR A;  1P4T A;  2Y0H A;  4KRA A;  4RL9 A;  3LK2 B;  2FGR A;  5ADX K;  2N2M A;  4FES A;  2M07 A;  4GCP A;  4AYN A;  4JCH A;  3SY9 A;  2W81 C;  4GF4 A;  2W80 C;  5T5F A;  3O0E A;  2JMM A;  3AAE A;  5AFU L;  3PQS A;  4O4U A;  3HW9 A;  1ZHT A;  2KXP B;  2YPV A;  4XNK A;  2XG6 A;  3G7G A;  4N58 A;  3AA7 A;  1ZHW A;  4QQ1 A;  5ADX L;  4E1S A;  5JDP A;  3KVD D;  4RJW A;  3K19 A;  2J1N A;  5PRN A;  3JTY A;  3UU2 A;  2M06 A;  4FMS A;  3AA1 B;  4O3W A;  2FGQ X;  5GV0 A;  3T20 A;  4LSI A;  4AYE C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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