5DL7A

Crystal structure of acinetobacter baumannii occab3
Total Genus 115
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
402
structure length
402
Chain Sequence
IADSKAELTLRNFYFDRDYKKDPYPYTAARDWAQGLIFKGQSGYTEGTVGFGVDVLAMAGFNLMGSRADDYARSGLLPVNTDNSRDDYYGKIGITGKAKFRKNELFVGDLVPQLPTIFSSPARLFPQTYRGIRFVSNEIPNLQLEGFYVDEVRQRDSIRYTDVGTDNINHRFNKAATTDSFYTLGGSYQLKDYRLRAYHAELKDIYQQQFLGFNGKQPLNDQLNFLSDVRFFNSEETGSKKIGEVDNRHISGLFGLNYQNHTVSLGYMQSFGSTGLPFLSGTESPVVLDFMSSDYSNKDEKVYSIRYEYDFKNARIGDVSLNGLRFMTRYAKGEDIDLLQYGDQRFKEDSLEFDLGYKIPEGKLKGLGMRARFSHYRNDMPTNMTFHSANETRLNVDYTFKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
source organism Acinetobacter baumannii ab307-0294
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
molecule keywords Porin
total genus 115
structure length 402
sequence length 402
ec nomenclature
pdb deposition date 2015-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl7A00
2Y0LA 2O4VA 5DL6A 3VZWX 4AUIA 3PRNA 6PRNA 2ZFGA 4FSPA 4FMSA 2FGQX 4KR8A 3UPGA 4FT6A 1GFQA 4D64A 3EMNX 4LSHA 1BT9A 4LSEA 4BUMX 2XE2A 2J1NA 2ZLDA 4LSIA 3PORA 4GCQA 2XG6A 4RJWA 1GFOA 3UU2A 5PRNA 1PHOA 3JTYA 1GFMA 3POUA 4GCSA 1HXTA 2PRNA 2Y0HA 4KR4A 3T0SA 3POXA 1GFNA 2XE5A 2Y2XA 2OMFA 3T20A 4FRTA 2QTKA 3VY9X 4LSFA 2XE3A 3HW9A 1MPFA 1OSMA 3VZTX 3FYXA 1PRNA 3SZDA 3SY9A 2Y0KA 3POQA 3O0EA 3SY7A 3WI5A 3HWBA 4GCPA 8PRNA 4FSOA 2ODJA 4KRAA 1H6S1 5DL5A 5DL7A 1E54A 5FVNA 2K4TA 1GFPA 2FGRA 7PRNA 2J4UP 3T24A 4RJXA 3WI4A 3A2SX 5DL8A 2XE1A 1HXXA 4FOZA 4FRXA 3SZVA 4JFBA 3SYSA 3NSGA 4C69X 5JDPA 1OPFA 3SYBA 3VZUX 1BH3A 3VY8X 3K19A 2PORA 4D5UA 1HXUA 4D65A
chains in the Genus database with same CATH superfamily
2N2LA 3GP6A 4FZLA 2KXPB 3A0BO 2R8AA 3G7GA 5KAIO 2Y0LA 4PJ0O 2KDYA 2O4VA 1ZHTA 3LK3B 5DL6A 1S5LO 3QRCA 5AFUL 4B61A 4O3WA 3NJTA 3VZWX 4AUIA 3PRNA 4AYNA 6PRNA 5GTHO 2ERVA 2WJQA 2ZFGA 4FMSA 4FSPA 2FGQX 3PQUA 4N74A 1BXWA 4O4UA 2X9KA 4GF4A 4KR8A 3UPGA 4F4BA 4FT6A 1GFQA 4D64A 1QJ8A 2M07A 3WU2O 2KC0A 3EMNX 1QJ9A 4LSHA 1BT9A 4LSEA 3AAEB 3PQSA 4RL9A 4BUMX 3BRZA 2R88A 2XE2A 3AA7A 4N59A 4FQEA 4GHBA 2J1NA 5GV0A 2ZLDA 4LSIA 3PORA 2R4NA 5GTIO 5TISO 4AYEC 1ORMA 2XG6A 3HOLA 3AA7B 4GCQA 3UAQA 4QQ1A 2W81C 4PR7A 5ADXL 3QRAA 1QJPA 4RJWA 1GFOA 2Y7SA 4AFKA 4UB6O 3UU2A 2LHFA 2R4OA 3BRYA 5PRNA 1PHOA 3JTYA 1GFMA 2X27X 3POUA 5T5FA 4GCSA 1ZHYA 5B66O 1HXTA 2PRNA 2R4PA 2Y0HA 4KR4A 4XNKA 3T0SA 2IWWA 3POXA 3DWNA 3DA3A 3HOEA 1GFNA 2WVPA 2XE5A 3TZGA 3LK2A 2Y2XA 2OMFA 4JCHA 3T20A 2JMMA 4U9CA 3AA0A 2N2MA 4FUVA 2MNHA 4RLBA 4FZNA 4C4VA 4FRTA 5KAFO 2QTKA 3LK2B 4O3YA 4K3BA 3VY9X 4FESA 4LSFA 1G90A 3AA0B 2XE3A 4O3XB 4C4VB 3HW9A 1MPFA 1T1LA 1OSMA 4G75A 3VZTX 2F1TA 3FYXA 1PRNA 3SZDA 4AYMC 3SY9A 4CTDA 4E1TA 2Y0KA 1Q9FA 3AAAA 3POQA 3A0HO 3O0EA 5G38A 3PGRA 3SY7A 8PRNA 2XTQA 3HWBA 4GCPA 3WI5A 1MM5A 4FSOA 4IL6O 5D5DA 4AZLA 4E1SA 3LK42 2ODJA 4KRAA 1H6S1 2JQYA 3AA1B 2LFUA 5DL5A 5DL7A 5EE2A 3AAAB 4AKMA 1T16A 5G3AA 4AYID 3KVDD 1E54A 2KZ7A 2AXTO 3AA1A 3AA6A 4FZMA 4C00A 5FVNA 2K4TA 1GFPA 2FGRA 5AFUK 7PRNA 2R89A 2J4UP 2F1VA 1IZNA 3DWOX 2KZ7B 3T24A 2IWVA 3AA6B 4RJXA 3RBHA 4O49A 3WI4A 3A2SX 4O3ZA 4RLCA 1ZHZA 3C5OA 5DL8A 5G26A 3KZIO 1ZHWA 2F1CX 1IZNB 2XMXA 2R4LA 5G39A 2XE1A 1HXXA 2YPVA 4O4XA 4AKRA 4FOZA 4G76A 1THQA 4K3CA 5B5EO 4XNLA 4AYDC 2K0LA 4FRXA 3SZVA 4JFBA 5IYUA 3VE1A 3SYSA 2YNKA 5E79O 3AAEA 2M06A 3DZMA 2WJRA 3NSGA 1OPFA 4AKRB 4C69X 3PF1A 5JDPA 4N58A 3PGUA 1ZHXA 3JCUO 3SYBA 2GE4A 3VZUX 3LK41 3V8UA 5ADXK 1BH3A 2MHLA 4PUXA 4UB8O 5H2FO 3VY8X 3DA4A 3K19A 3VE2A 2XTRA 2PORA 1Q9GA 2KXPA 1YS5A 4Z3TA 3BS0A 1MM4A 4D5UA 1HXUA 3LK3A 4N75A 1P4TA 2W80C 4D65A 3PGSA
chains in the Genus database with same CATH topology
2N2LA 3GP6A 4FZLA 2KXPB 3G7GA 2Y0LA 2KDYA 2O4VA 1ZHTA 3LK3B 5DL6A 3QRCA 5AFUL 4B61A 4O3WA 3VZWX 4AUIA 3PRNA 4AYNA 6PRNA 2ERVA 2ZFGA 4FSPA 4FMSA 4O4UA 2FGQX 3PQUA 1BXWA 4GF4A 4KR8A 3UPGA 4F4BA 4FT6A 1GFQA 4D64A 1QJ8A 2M07A 2KC0A 3EMNX 1QJ9A 4LSHA 1BT9A 4LSEA 3AAEB 3PQSA 4RL9A 4BUMX 2XE2A 3AA7A 4N59A 4GHBA 2J1NA 5GV0A 2ZLDA 4LSIA 3PORA 4AYEC 1ORMA 2XG6A 3HOLA 3AA7B 4GCQA 3UAQA 4QQ1A 2W81C 5ADXL 3QRAA 1QJPA 4RJWA 1GFOA 2Y7SA 4AFKA 3UU2A 2LHFA 5PRNA 1PHOA 3JTYA 1GFMA 2X27X 3POUA 5T5FA 4GCSA 1ZHYA 1HXTA 2PRNA 2Y0HA 4KR4A 4XNKA 3T0SA 3POXA 3DA3A 3HOEA 1GFNA 2XE5A 3TZGA 3LK2A 2Y2XA 2OMFA 4JCHA 3T20A 2JMMA 4U9CA 3AA0A 2N2MA 4FUVA 2MNHA 4RLBA 4FZNA 4FRTA 2QTKA 3LK2B 4O3YA 3VY9X 4FESA 4LSFA 1G90A 3AA0B 2XE3A 4O3XB 3HW9A 1MPFA 1OSMA 4G75A 3VZTX 2F1TA 3FYXA 1PRNA 3SZDA 4AYMC 3SY9A 4E1TA 2Y0KA 1Q9FA 3AAAA 3POQA 3O0EA 3SY7A 2XTQA 3HWBA 4GCPA 3WI5A 1MM5A 4FSOA 5D5DA 4AZLA 4E1SA 8PRNA 3LK42 2ODJA 4KRAA 1H6S1 5DL5A 3AA1B 2LFUA 5DL7A 5EE2A 4AKMA 3AAAB 4AYID 3KVDD 1E54A 2KZ7A 3AA1A 3AA6A 4FZMA 5FVNA 2K4TA 1GFPA 2FGRA 5AFUK 7PRNA 2J4UP 2F1VA 1IZNA 2KZ7B 3T24A 3AA6B 4RJXA 3RBHA 4O49A 3WI4A 3A2SX 4O3ZA 4RLCA 1ZHZA 3C5OA 5DL8A 5G26A 1ZHWA 2XMXA 1IZNB 2XE1A 1HXXA 2YPVA 4O4XA 4AKRA 4FOZA 4G76A 1THQA 4XNLA 4AYDC 2K0LA 4FRXA 3SZVA 4JFBA 5IYUA 3VE1A 3SYSA 2YNKA 3AAEA 2M06A 3NSGA 4AKRB 4C69X 1OPFA 5JDPA 4N58A 1ZHXA 3SYBA 2GE4A 3VZUX 3LK41 3V8UA 5ADXK 1BH3A 2MHLA 4PUXA 3VY8X 3DA4A 3K19A 3VE2A 2XTRA 2PORA 1Q9GA 2KXPA 1YS5A 4Z3TA 1MM4A 4D5UA 1HXUA 3LK3A 1P4TA 2W80C 4D65A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0L A;  2O4V A;  5DL6 A;  3VZW X;  4AUI A;  3PRN A;  6PRN A;  2ZFG A;  4FSP A;  4FMS A;  2FGQ X;  4KR8 A;  3UPG A;  4FT6 A;  1GFQ A;  4D64 A;  3EMN X;  4LSH A;  1BT9 A;  4LSE A;  4BUM X;  2XE2 A;  2J1N A;  2ZLD A;  4LSI A;  3POR A;  4GCQ A;  2XG6 A;  4RJW A;  1GFO A;  3UU2 A;  5PRN A;  1PHO A;  3JTY A;  1GFM A;  3POU A;  4GCS A;  1HXT A;  2PRN A;  2Y0H A;  4KR4 A;  3T0S A;  3POX A;  1GFN A;  2XE5 A;  2Y2X A;  2OMF A;  3T20 A;  4FRT A;  2QTK A;  3VY9 X;  4LSF A;  2XE3 A;  3HW9 A;  1MPF A;  1OSM A;  3VZT X;  3FYX A;  1PRN A;  3SZD A;  3SY9 A;  2Y0K A;  3POQ A;  3O0E A;  3SY7 A;  3WI5 A;  3HWB A;  4GCP A;  8PRN A;  4FSO A;  2ODJ A;  4KRA A;  1H6S 1;  5DL5 A;  5DL7 A;  1E54 A;  5FVN A;  2K4T A;  1GFP A;  2FGR A;  7PRN A;  2J4U P;  3T24 A;  4RJX A;  3WI4 A;  3A2S X;  5DL8 A;  2XE1 A;  1HXX A;  4FOZ A;  4FRX A;  3SZV A;  4JFB A;  3SYS A;  3NSG A;  4C69 X;  5JDP A;  1OPF A;  3SYB A;  3VZU X;  1BH3 A;  3VY8 X;  3K19 A;  2POR A;  4D5U A;  1HXU A;  4D65 A; 
#chains in the Genus database with same CATH topology
 2N2L A;  3GP6 A;  4FZL A;  2KXP B;  3A0B O;  2R8A A;  3G7G A;  5KAI O;  2Y0L A;  4PJ0 O;  2KDY A;  2O4V A;  1ZHT A;  3LK3 B;  5DL6 A;  1S5L O;  3QRC A;  5AFU L;  4B61 A;  4O3W A;  3NJT A;  3VZW X;  4AUI A;  3PRN A;  4AYN A;  6PRN A;  5GTH O;  2ERV A;  2WJQ A;  2ZFG A;  4FMS A;  4FSP A;  2FGQ X;  3PQU A;  4N74 A;  1BXW A;  4O4U A;  2X9K A;  4GF4 A;  4KR8 A;  3UPG A;  4F4B A;  4FT6 A;  1GFQ A;  4D64 A;  1QJ8 A;  2M07 A;  3WU2 O;  2KC0 A;  3EMN X;  1QJ9 A;  4LSH A;  1BT9 A;  4LSE A;  3AAE B;  3PQS A;  4RL9 A;  4BUM X;  3BRZ A;  2R88 A;  2XE2 A;  3AA7 A;  4N59 A;  4FQE A;  4GHB A;  2J1N A;  5GV0 A;  2ZLD A;  4LSI A;  3POR A;  2R4N A;  5GTI O;  5TIS O;  4AYE C;  1ORM A;  2XG6 A;  3HOL A;  3AA7 B;  4GCQ A;  3UAQ A;  4QQ1 A;  2W81 C;  4PR7 A;  5ADX L;  3QRA A;  1QJP A;  4RJW A;  1GFO A;  2Y7S A;  4AFK A;  4UB6 O;  3UU2 A;  2LHF A;  2R4O A;  3BRY A;  5PRN A;  1PHO A;  3JTY A;  1GFM A;  2X27 X;  3POU A;  5T5F A;  4GCS A;  1ZHY A;  5B66 O;  1HXT A;  2PRN A;  2R4P A;  2Y0H A;  4KR4 A;  4XNK A;  3T0S A;  2IWW A;  3POX A;  3DWN A;  3DA3 A;  3HOE A;  1GFN A;  2WVP A;  2XE5 A;  3TZG A;  3LK2 A;  2Y2X A;  2OMF A;  4JCH A;  3T20 A;  2JMM A;  4U9C A;  3AA0 A;  2N2M A;  4FUV A;  2MNH A;  4RLB A;  4FZN A;  4C4V A;  4FRT A;  5KAF O;  2QTK A;  3LK2 B;  4O3Y A;  4K3B A;  3VY9 X;  4FES A;  4LSF A;  1G90 A;  3AA0 B;  2XE3 A;  4O3X B;  4C4V B;  3HW9 A;  1MPF A;  1T1L A;  1OSM A;  4G75 A;  3VZT X;  2F1T A;  3FYX A;  1PRN A;  3SZD A;  4AYM C;  3SY9 A;  4CTD A;  4E1T A;  2Y0K A;  1Q9F A;  3AAA A;  3POQ A;  3A0H O;  3O0E A;  5G38 A;  3PGR A;  3SY7 A;  8PRN A;  2XTQ A;  3HWB A;  4GCP A;  3WI5 A;  1MM5 A;  4FSO A;  4IL6 O;  5D5D A;  4AZL A;  4E1S A;  3LK4 2;  2ODJ A;  4KRA A;  1H6S 1;  2JQY A;  3AA1 B;  2LFU A;  5DL5 A;  5DL7 A;  5EE2 A;  3AAA B;  4AKM A;  1T16 A;  5G3A A;  4AYI D;  3KVD D;  1E54 A;  2KZ7 A;  2AXT O;  3AA1 A;  3AA6 A;  4FZM A;  4C00 A;  5FVN A;  2K4T A;  1GFP A;  2FGR A;  5AFU K;  7PRN A;  2R89 A;  2J4U P;  2F1V A;  1IZN A;  3DWO X;  2KZ7 B;  3T24 A;  2IWV A;  3AA6 B;  4RJX A;  3RBH A;  4O49 A;  3WI4 A;  3A2S X;  4O3Z A;  4RLC A;  1ZHZ A;  3C5O A;  5DL8 A;  5G26 A;  3KZI O;  1ZHW A;  2F1C X;  1IZN B;  2XMX A;  2R4L A;  5G39 A;  2XE1 A;  1HXX A;  2YPV A;  4O4X A;  4AKR A;  4FOZ A;  4G76 A;  1THQ A;  4K3C A;  5B5E O;  4XNL A;  4AYD C;  2K0L A;  4FRX A;  3SZV A;  4JFB A;  5IYU A;  3VE1 A;  3SYS A;  2YNK A;  5E79 O;  3AAE A;  2M06 A;  3DZM A;  2WJR A;  3NSG A;  1OPF A;  4AKR B;  4C69 X;  3PF1 A;  5JDP A;  4N58 A;  3PGU A;  1ZHX A;  3JCU O;  3SYB A;  2GE4 A;  3VZU X;  3LK4 1;  3V8U A;  5ADX K;  1BH3 A;  2MHL A;  4PUX A;  4UB8 O;  5H2F O;  3VY8 X;  3DA4 A;  3K19 A;  3VE2 A;  2XTR A;  2POR A;  1Q9G A;  2KXP A;  1YS5 A;  4Z3T A;  3BS0 A;  1MM4 A;  4D5U A;  1HXU A;  3LK3 A;  4N75 A;  1P4T A;  2W80 C;  4D65 A;  3PGS A; 
#chains in the Genus database with same CATH homology
 2N2L A;  3GP6 A;  4FZL A;  2KXP B;  3G7G A;  2Y0L A;  2KDY A;  2O4V A;  1ZHT A;  3LK3 B;  5DL6 A;  3QRC A;  5AFU L;  4B61 A;  4O3W A;  3VZW X;  4AUI A;  3PRN A;  4AYN A;  6PRN A;  2ERV A;  2ZFG A;  4FSP A;  4FMS A;  4O4U A;  2FGQ X;  3PQU A;  1BXW A;  4GF4 A;  4KR8 A;  3UPG A;  4F4B A;  4FT6 A;  1GFQ A;  4D64 A;  1QJ8 A;  2M07 A;  2KC0 A;  3EMN X;  1QJ9 A;  4LSH A;  1BT9 A;  4LSE A;  3AAE B;  3PQS A;  4RL9 A;  4BUM X;  2XE2 A;  3AA7 A;  4N59 A;  4GHB A;  2J1N A;  5GV0 A;  2ZLD A;  4LSI A;  3POR A;  4AYE C;  1ORM A;  2XG6 A;  3HOL A;  3AA7 B;  4GCQ A;  3UAQ A;  4QQ1 A;  2W81 C;  5ADX L;  3QRA A;  1QJP A;  4RJW A;  1GFO A;  2Y7S A;  4AFK A;  3UU2 A;  2LHF A;  5PRN A;  1PHO A;  3JTY A;  1GFM A;  2X27 X;  3POU A;  5T5F A;  4GCS A;  1ZHY A;  1HXT A;  2PRN A;  2Y0H A;  4KR4 A;  4XNK A;  3T0S A;  3POX A;  3DA3 A;  3HOE A;  1GFN A;  2XE5 A;  3TZG A;  3LK2 A;  2Y2X A;  2OMF A;  4JCH A;  3T20 A;  2JMM A;  4U9C A;  3AA0 A;  2N2M A;  4FUV A;  2MNH A;  4RLB A;  4FZN A;  4FRT A;  2QTK A;  3LK2 B;  4O3Y A;  3VY9 X;  4FES A;  4LSF A;  1G90 A;  3AA0 B;  2XE3 A;  4O3X B;  3HW9 A;  1MPF A;  1OSM A;  4G75 A;  3VZT X;  2F1T A;  3FYX A;  1PRN A;  3SZD A;  4AYM C;  3SY9 A;  4E1T A;  2Y0K A;  1Q9F A;  3AAA A;  3POQ A;  3O0E A;  3SY7 A;  2XTQ A;  3HWB A;  4GCP A;  3WI5 A;  1MM5 A;  4FSO A;  5D5D A;  4AZL A;  4E1S A;  8PRN A;  3LK4 2;  2ODJ A;  4KRA A;  1H6S 1;  5DL5 A;  3AA1 B;  2LFU A;  5DL7 A;  5EE2 A;  4AKM A;  3AAA B;  4AYI D;  3KVD D;  1E54 A;  2KZ7 A;  3AA1 A;  3AA6 A;  4FZM A;  5FVN A;  2K4T A;  1GFP A;  2FGR A;  5AFU K;  7PRN A;  2J4U P;  2F1V A;  1IZN A;  2KZ7 B;  3T24 A;  3AA6 B;  4RJX A;  3RBH A;  4O49 A;  3WI4 A;  3A2S X;  4O3Z A;  4RLC A;  1ZHZ A;  3C5O A;  5DL8 A;  5G26 A;  1ZHW A;  2XMX A;  1IZN B;  2XE1 A;  1HXX A;  2YPV A;  4O4X A;  4AKR A;  4FOZ A;  4G76 A;  1THQ A;  4XNL A;  4AYD C;  2K0L A;  4FRX A;  3SZV A;  4JFB A;  5IYU A;  3VE1 A;  3SYS A;  2YNK A;  3AAE A;  2M06 A;  3NSG A;  4AKR B;  4C69 X;  1OPF A;  5JDP A;  4N58 A;  1ZHX A;  3SYB A;  2GE4 A;  3VZU X;  3LK4 1;  3V8U A;  5ADX K;  1BH3 A;  2MHL A;  4PUX A;  3VY8 X;  3DA4 A;  3K19 A;  3VE2 A;  2XTR A;  2POR A;  1Q9G A;  2KXP A;  1YS5 A;  4Z3T A;  1MM4 A;  4D5U A;  1HXU A;  3LK3 A;  1P4T A;  2W80 C;  4D65 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...