5DL7A

Crystal structure of acinetobacter baumannii occab3
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
402
structure length
402
Chain Sequence
IADSKAELTLRNFYFDRDYKKDPYPYTAARDWAQGLIFKGQSGYTEGTVGFGVDVLAMAGFNLMGSRADDYARSGLLPVNTDNSRDDYYGKIGITGKAKFRKNELFVGDLVPQLPTIFSSPARLFPQTYRGIRFVSNEIPNLQLEGFYVDEVRQRDSIRYTDVGTDNINHRFNKAATTDSFYTLGGSYQLKDYRLRAYHAELKDIYQQQFLGFNGKQPLNDQLNFLSDVRFFNSEETGSKKIGEVDNRHISGLFGLNYQNHTVSLGYMQSFGSTGLPFLSGTESPVVLDFMSSDYSNKDEKVYSIRYEYDFKNARIGDVSLNGLRFMTRYAKGEDIDLLQYGDQRFKEDSLEFDLGYKIPEGKLKGLGMRARFSHYRNDMPTNMTFHSANETRLNVDYTFKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Porin
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
total genus 115
structure length 402
sequence length 402
ec nomenclature
pdb deposition date 2015-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl7A00
4FRTA 3VY8X 7PRNA 4LSHA 8PRNA 2FGRA 3O0EA 4JFBA 4GCQA 1PHOA 5JDPA 1GFPA 3WI4A 2K4TA 3K19A 1H6S1 3WI5A 4LSFA 1OPFA 4KRAA 4FOZA 4KR4A 3SYSA 3FYXA 2J1NA 3NSGA 2ZFGA 4FSPA 3T24A 4D64A 2Y0LA 2ZLDA 3SYBA 2PORA 4BUMX 5DL6A 2XE2A 3UU2A 4KR8A 1PRNA 3PRNA 4RJXA 2XE3A 2XE5A 3EMNX 5DL7A 4RJWA 3POUA 3SZDA 1HXXA 1OSMA 5PRNA 4D5UA 2XG6A 2Y0KA 3SY7A 1GFQA 3SY9A 3POXA 3POQA 4D65A 3HW9A 3HWBA 3PORA 3T20A 4FT6A 2OMFA 2ODJA 3SZVA 1HXTA 4C69X 3T0SA 2J4UP 2Y2XA 1GFMA 3A2SX 2QTKA 1HXUA 2Y0HA 1BT9A 3VZTX 2PRNA 6PRNA 5DL5A 3UPGA 3VZWX 2FGQX 1GFNA 2O4VA 4AUIA 3JTYA 3VZUX 1GFOA 2XE1A 4LSEA 4GCSA 4FMSA 3VY9X 1BH3A 1E54A 4FSOA 1MPFA 4GCPA 5DL8A 5FVNA 4LSIA 4FRXA
chains in the Genus database with same CATH superfamily
4FRTA 1T16A 5T5FA 3VY8X 1IZNA 7PRNA 4FZLA 2R4PA 4LSHA 2R88A 4IL6O 4C4VA 4E1TA 3UPGA 4N74A 8PRNA 3AA1B 2FGRA 2R4NA 3O0EA 4JFBA 4AKRA 4FZMA 1MM5A 2W81C 4O3XB 4O3ZA 1ZHZA 4GCQA 2MHLA 5GTHO 3LK3B 1PHOA 4B61A 2N2LA 1QJPA 2R4OA 4RLCA 4AKMA 5JDPA 2N2MA 4RLBA 1GFPA 5B66O 4UB6O 3WI4A 2AXTO 2K4TA 2ERVA 3K19A 1G90A 1H6S1 3PGSA 4N58A 5D5DA 3WI5A 4LSFA 1OPFA 4KRAA 3AAEB 3PGRA 1ZHXA 3GP6A 4FOZA 2WVPA 4KR4A 3SYSA 3FYXA 2J1NA 1T1LA 4N75A 2MNHA 2ZFGA 3NSGA 5ADXK 4FSPA 5G26A 4AYNA 3LK2B 3T24A 4FQEA 3G7GA 4D64A 4FZNA 4F4BA 5KAIO 3AA0B 3AA6A 2Y0LA 2ZLDA 1QJ9A 3AA7A 2X27X 3AAAB 2PORA 2XTRA 3PF1A 3SYBA 3VE2A 2JQYA 2LHFA 3C5OA 4BUMX 4CTDA 4QQ1A 5DL6A 2XE2A 4K3CA 4E1SA 3UU2A 2YNKA 1PRNA 3DA4A 1QJ8A 3PQSA 1THQA 4G76A 4JCHA 3PRNA 4KR8A 4PJ0O 5G3AA 4RJXA 4AFKA 3DWNA 2F1VA 2GE4A 2IWVA 1IZNB 2XE3A 2XE5A 3EMNX 1ZHWA 5DL7A 4RJWA 4C4VB 3POUA 3SZDA 1HXXA 1OSMA 3DZMA 2KZ7A 2WJRA 3UAQA 4AKRB 2M07A 4AYID 2YPVA 2KXPA 5EE2A 5PRNA 2WJQA 2XG6A 4RL9A 2Y0KA 5G38A 4D5UA 2W80C 3SY7A 1GFQA 3DA3A 3PGUA 3SY9A 1ORMA 3KVDD 3POXA 3DWOX 4K3BA 2KC0A 5GV0A 2M06A 3POQA 5IYUA 4O49A 4FUVA 4GF4A 1BXWA 4Z3TA 5H2FO 5AFUK 4UB8O 1Q9GA 4D65A 2Y7SA 3HW9A 3HWBA 3PORA 4C00A 3T20A 4FT6A 2OMFA 4PR7A 2ODJA 2R8AA 3SZVA 2R4LA 1HXTA 4C69X 5ADXL 3PQUA 4XNKA 3NJTA 3T0SA 4AYEC 2XTQA 3AA1A 2K0LA 2J4UP 2Y2XA 1GFMA 3A2SX 2QTKA 1HXUA 2Y0HA 3AA6B 3KZIO 1Q9FA 2LFUA 4FESA 5KAFO 1BT9A 3LK3A 2PRNA 3LK41 3LK42 4O4UA 2XMXA 5DL5A 1S5LO 3VZTX 5TISO 1P4TA 2IWWA 1ZHTA 2F1CX 2FGQX 2X9KA 4O3WA 2F1TA 3VZWX 1GFNA 3BRYA 2O4VA 4AUIA 3JTYA 3VZUX 5B5EO 1GFOA 2KDYA 3HOLA 2XE1A 4LSEA 5G39A 3JCUO 2KZ7B 3AAEA 4GCSA 1ZHYA 4FMSA 4PUXA 3RBHA 3VY9X 4G75A 3BS0A 1E54A 1BH3A 2KXPB 4XNLA 4N59A 3WU2O 4FSOA 1MPFA 5E79O 3BRZA 4GCPA 3LK2A 5DL8A 4AYMC 4O4XA 2JMMA 3AA0A 4U9CA 5GTIO 2R89A 1MM4A 3AAAA 3A0BO 3HOEA 4GHBA 3V8UA 3A0HO 3QRAA 3TZGA 1YS5A 3QRCA 4O3YA 5FVNA 3AA7B 4AYDC 3VE1A 4LSIA 5AFUL 6PRNA 4FRXA 4AZLA
chains in the Genus database with same CATH topology
4FRTA 5T5FA 3VY8X 1IZNA 7PRNA 4FZLA 4LSHA 4E1TA 8PRNA 3AA1B 2FGRA 3O0EA 4JFBA 4AKRA 4FZMA 1MM5A 2W81C 4O3XB 4O3ZA 1ZHZA 4GCQA 2MHLA 3LK3B 1PHOA 4B61A 2N2LA 1QJPA 4RLCA 4AKMA 5JDPA 2N2MA 4RLBA 1GFPA 3WI4A 2K4TA 2ERVA 3K19A 1G90A 1H6S1 4N58A 5D5DA 3WI5A 4LSFA 1OPFA 4KRAA 3AAEB 1ZHXA 3GP6A 4FOZA 4KR4A 3SYSA 3FYXA 2J1NA 2MNHA 2ZFGA 3NSGA 5ADXK 4FSPA 5G26A 4AYNA 3LK2B 3T24A 3G7GA 4D64A 4FZNA 4F4BA 3AA0B 3AA6A 2Y0LA 2ZLDA 1QJ9A 3AA7A 2X27X 3AAAB 2PORA 2XTRA 3SYBA 3VE2A 4BUMX 3C5OA 2LHFA 4QQ1A 5DL6A 2XE2A 4E1SA 3UU2A 2YNKA 1PRNA 3DA4A 1QJ8A 3PQSA 1THQA 4G76A 4JCHA 3PRNA 4KR8A 4AYEC 4RJXA 4AFKA 2F1VA 2GE4A 2XE3A 1IZNB 2XE5A 3EMNX 5DL7A 1ZHWA 4RJWA 3POUA 3SZDA 1HXXA 1OSMA 2KZ7A 3UAQA 4AKRB 2M07A 4AYID 2YPVA 2KXPA 5EE2A 5PRNA 4D5UA 2XG6A 4RL9A 2Y0KA 2W80C 3SY7A 1GFQA 3DA3A 3SY9A 1ORMA 3KVDD 3POXA 2KC0A 5GV0A 2M06A 3POQA 5IYUA 4O49A 4FUVA 4GF4A 1BXWA 4Z3TA 5AFUK 1Q9GA 4D65A 2Y7SA 3HW9A 3HWBA 3PORA 3T20A 4FT6A 2OMFA 2ODJA 3SZVA 5ADXL 1HXTA 4C69X 3PQUA 4XNKA 3T0SA 2XTQA 3AA1A 2K0LA 2J4UP 2Y2XA 1GFMA 3A2SX 2QTKA 1HXUA 2Y0HA 3AA6B 4FESA 1Q9FA 2LFUA 1BT9A 3LK3A 2PRNA 3LK41 3LK42 4O4UA 2XMXA 5DL5A 3VZTX 6PRNA 3UPGA 1P4TA 1ZHTA 3VZWX 2FGQX 4O3WA 2F1TA 1GFNA 2O4VA 4AUIA 3JTYA 3VZUX 1GFOA 2KDYA 3HOLA 2XE1A 4LSEA 2KZ7B 3AAEA 4GCSA 1ZHYA 4FMSA 4PUXA 3RBHA 3VY9X 4G75A 1E54A 1BH3A 2KXPB 4XNLA 4N59A 4FSOA 1MPFA 4GCPA 3LK2A 5DL8A 4AYMC 4O4XA 2JMMA 3AA0A 4U9CA 3AAAA 1MM4A 4GHBA 3HOEA 3V8UA 3QRAA 3TZGA 1YS5A 3QRCA 4O3YA 5FVNA 3AA7B 4AYDC 3VE1A 4LSIA 5AFUL 4FRXA 4AZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FRT A;  3VY8 X;  7PRN A;  4LSH A;  8PRN A;  2FGR A;  3O0E A;  4JFB A;  4GCQ A;  1PHO A;  5JDP A;  1GFP A;  3WI4 A;  2K4T A;  3K19 A;  1H6S 1;  3WI5 A;  4LSF A;  1OPF A;  4KRA A;  4FOZ A;  4KR4 A;  3SYS A;  3FYX A;  2J1N A;  3NSG A;  2ZFG A;  4FSP A;  3T24 A;  4D64 A;  2Y0L A;  2ZLD A;  3SYB A;  2POR A;  4BUM X;  5DL6 A;  2XE2 A;  3UU2 A;  4KR8 A;  1PRN A;  3PRN A;  4RJX A;  2XE3 A;  2XE5 A;  3EMN X;  5DL7 A;  4RJW A;  3POU A;  3SZD A;  1HXX A;  1OSM A;  5PRN A;  4D5U A;  2XG6 A;  2Y0K A;  3SY7 A;  1GFQ A;  3SY9 A;  3POX A;  3POQ A;  4D65 A;  3HW9 A;  3HWB A;  3POR A;  3T20 A;  4FT6 A;  2OMF A;  2ODJ A;  3SZV A;  1HXT A;  4C69 X;  3T0S A;  2J4U P;  2Y2X A;  1GFM A;  3A2S X;  2QTK A;  1HXU A;  2Y0H A;  1BT9 A;  3VZT X;  2PRN A;  6PRN A;  5DL5 A;  3UPG A;  3VZW X;  2FGQ X;  1GFN A;  2O4V A;  4AUI A;  3JTY A;  3VZU X;  1GFO A;  2XE1 A;  4LSE A;  4GCS A;  4FMS A;  3VY9 X;  1BH3 A;  1E54 A;  4FSO A;  1MPF A;  4GCP A;  5DL8 A;  5FVN A;  4LSI A;  4FRX A; 
#chains in the Genus database with same CATH topology
 4FRT A;  1T16 A;  5T5F A;  3VY8 X;  1IZN A;  7PRN A;  4FZL A;  2R4P A;  4LSH A;  2R88 A;  4IL6 O;  4C4V A;  4E1T A;  3UPG A;  4N74 A;  8PRN A;  3AA1 B;  2FGR A;  2R4N A;  3O0E A;  4JFB A;  4AKR A;  4FZM A;  1MM5 A;  2W81 C;  4O3X B;  4O3Z A;  1ZHZ A;  4GCQ A;  2MHL A;  5GTH O;  3LK3 B;  1PHO A;  4B61 A;  2N2L A;  1QJP A;  2R4O A;  4RLC A;  4AKM A;  5JDP A;  2N2M A;  4RLB A;  1GFP A;  5B66 O;  4UB6 O;  3WI4 A;  2AXT O;  2K4T A;  2ERV A;  3K19 A;  1G90 A;  1H6S 1;  3PGS A;  4N58 A;  5D5D A;  3WI5 A;  4LSF A;  1OPF A;  4KRA A;  3AAE B;  3PGR A;  1ZHX A;  3GP6 A;  4FOZ A;  2WVP A;  4KR4 A;  3SYS A;  3FYX A;  2J1N A;  1T1L A;  4N75 A;  2MNH A;  2ZFG A;  3NSG A;  5ADX K;  4FSP A;  5G26 A;  4AYN A;  3LK2 B;  3T24 A;  4FQE A;  3G7G A;  4D64 A;  4FZN A;  4F4B A;  5KAI O;  3AA0 B;  3AA6 A;  2Y0L A;  2ZLD A;  1QJ9 A;  3AA7 A;  2X27 X;  3AAA B;  2POR A;  2XTR A;  3PF1 A;  3SYB A;  3VE2 A;  2JQY A;  2LHF A;  3C5O A;  4BUM X;  4CTD A;  4QQ1 A;  5DL6 A;  2XE2 A;  4K3C A;  4E1S A;  3UU2 A;  2YNK A;  1PRN A;  3DA4 A;  1QJ8 A;  3PQS A;  1THQ A;  4G76 A;  4JCH A;  3PRN A;  4KR8 A;  4PJ0 O;  5G3A A;  4RJX A;  4AFK A;  3DWN A;  2F1V A;  2GE4 A;  2IWV A;  1IZN B;  2XE3 A;  2XE5 A;  3EMN X;  1ZHW A;  5DL7 A;  4RJW A;  4C4V B;  3POU A;  3SZD A;  1HXX A;  1OSM A;  3DZM A;  2KZ7 A;  2WJR A;  3UAQ A;  4AKR B;  2M07 A;  4AYI D;  2YPV A;  2KXP A;  5EE2 A;  5PRN A;  2WJQ A;  2XG6 A;  4RL9 A;  2Y0K A;  5G38 A;  4D5U A;  2W80 C;  3SY7 A;  1GFQ A;  3DA3 A;  3PGU A;  3SY9 A;  1ORM A;  3KVD D;  3POX A;  3DWO X;  4K3B A;  2KC0 A;  5GV0 A;  2M06 A;  3POQ A;  5IYU A;  4O49 A;  4FUV A;  4GF4 A;  1BXW A;  4Z3T A;  5H2F O;  5AFU K;  4UB8 O;  1Q9G A;  4D65 A;  2Y7S A;  3HW9 A;  3HWB A;  3POR A;  4C00 A;  3T20 A;  4FT6 A;  2OMF A;  4PR7 A;  2ODJ A;  2R8A A;  3SZV A;  2R4L A;  1HXT A;  4C69 X;  5ADX L;  3PQU A;  4XNK A;  3NJT A;  3T0S A;  4AYE C;  2XTQ A;  3AA1 A;  2K0L A;  2J4U P;  2Y2X A;  1GFM A;  3A2S X;  2QTK A;  1HXU A;  2Y0H A;  3AA6 B;  3KZI O;  1Q9F A;  2LFU A;  4FES A;  5KAF O;  1BT9 A;  3LK3 A;  2PRN A;  3LK4 1;  3LK4 2;  4O4U A;  2XMX A;  5DL5 A;  1S5L O;  3VZT X;  5TIS O;  1P4T A;  2IWW A;  1ZHT A;  2F1C X;  2FGQ X;  2X9K A;  4O3W A;  2F1T A;  3VZW X;  1GFN A;  3BRY A;  2O4V A;  4AUI A;  3JTY A;  3VZU X;  5B5E O;  1GFO A;  2KDY A;  3HOL A;  2XE1 A;  4LSE A;  5G39 A;  3JCU O;  2KZ7 B;  3AAE A;  4GCS A;  1ZHY A;  4FMS A;  4PUX A;  3RBH A;  3VY9 X;  4G75 A;  3BS0 A;  1E54 A;  1BH3 A;  2KXP B;  4XNL A;  4N59 A;  3WU2 O;  4FSO A;  1MPF A;  5E79 O;  3BRZ A;  4GCP A;  3LK2 A;  5DL8 A;  4AYM C;  4O4X A;  2JMM A;  3AA0 A;  4U9C A;  5GTI O;  2R89 A;  1MM4 A;  3AAA A;  3A0B O;  3HOE A;  4GHB A;  3V8U A;  3A0H O;  3QRA A;  3TZG A;  1YS5 A;  3QRC A;  4O3Y A;  5FVN A;  3AA7 B;  4AYD C;  3VE1 A;  4LSI A;  5AFU L;  6PRN A;  4FRX A;  4AZL A; 
#chains in the Genus database with same CATH homology
 4FRT A;  5T5F A;  3VY8 X;  1IZN A;  7PRN A;  4FZL A;  4LSH A;  4E1T A;  8PRN A;  3AA1 B;  2FGR A;  3O0E A;  4JFB A;  4AKR A;  4FZM A;  1MM5 A;  2W81 C;  4O3X B;  4O3Z A;  1ZHZ A;  4GCQ A;  2MHL A;  3LK3 B;  1PHO A;  4B61 A;  2N2L A;  1QJP A;  4RLC A;  4AKM A;  5JDP A;  2N2M A;  4RLB A;  1GFP A;  3WI4 A;  2K4T A;  2ERV A;  3K19 A;  1G90 A;  1H6S 1;  4N58 A;  5D5D A;  3WI5 A;  4LSF A;  1OPF A;  4KRA A;  3AAE B;  1ZHX A;  3GP6 A;  4FOZ A;  4KR4 A;  3SYS A;  3FYX A;  2J1N A;  2MNH A;  2ZFG A;  3NSG A;  5ADX K;  4FSP A;  5G26 A;  4AYN A;  3LK2 B;  3T24 A;  3G7G A;  4D64 A;  4FZN A;  4F4B A;  3AA0 B;  3AA6 A;  2Y0L A;  2ZLD A;  1QJ9 A;  3AA7 A;  2X27 X;  3AAA B;  2POR A;  2XTR A;  3SYB A;  3VE2 A;  4BUM X;  3C5O A;  2LHF A;  4QQ1 A;  5DL6 A;  2XE2 A;  4E1S A;  3UU2 A;  2YNK A;  1PRN A;  3DA4 A;  1QJ8 A;  3PQS A;  1THQ A;  4G76 A;  4JCH A;  3PRN A;  4KR8 A;  4AYE C;  4RJX A;  4AFK A;  2F1V A;  2GE4 A;  2XE3 A;  1IZN B;  2XE5 A;  3EMN X;  5DL7 A;  1ZHW A;  4RJW A;  3POU A;  3SZD A;  1HXX A;  1OSM A;  2KZ7 A;  3UAQ A;  4AKR B;  2M07 A;  4AYI D;  2YPV A;  2KXP A;  5EE2 A;  5PRN A;  4D5U A;  2XG6 A;  4RL9 A;  2Y0K A;  2W80 C;  3SY7 A;  1GFQ A;  3DA3 A;  3SY9 A;  1ORM A;  3KVD D;  3POX A;  2KC0 A;  5GV0 A;  2M06 A;  3POQ A;  5IYU A;  4O49 A;  4FUV A;  4GF4 A;  1BXW A;  4Z3T A;  5AFU K;  1Q9G A;  4D65 A;  2Y7S A;  3HW9 A;  3HWB A;  3POR A;  3T20 A;  4FT6 A;  2OMF A;  2ODJ A;  3SZV A;  5ADX L;  1HXT A;  4C69 X;  3PQU A;  4XNK A;  3T0S A;  2XTQ A;  3AA1 A;  2K0L A;  2J4U P;  2Y2X A;  1GFM A;  3A2S X;  2QTK A;  1HXU A;  2Y0H A;  3AA6 B;  4FES A;  1Q9F A;  2LFU A;  1BT9 A;  3LK3 A;  2PRN A;  3LK4 1;  3LK4 2;  4O4U A;  2XMX A;  5DL5 A;  3VZT X;  6PRN A;  3UPG A;  1P4T A;  1ZHT A;  3VZW X;  2FGQ X;  4O3W A;  2F1T A;  1GFN A;  2O4V A;  4AUI A;  3JTY A;  3VZU X;  1GFO A;  2KDY A;  3HOL A;  2XE1 A;  4LSE A;  2KZ7 B;  3AAE A;  4GCS A;  1ZHY A;  4FMS A;  4PUX A;  3RBH A;  3VY9 X;  4G75 A;  1E54 A;  1BH3 A;  2KXP B;  4XNL A;  4N59 A;  4FSO A;  1MPF A;  4GCP A;  3LK2 A;  5DL8 A;  4AYM C;  4O4X A;  2JMM A;  3AA0 A;  4U9C A;  3AAA A;  1MM4 A;  4GHB A;  3HOE A;  3V8U A;  3QRA A;  3TZG A;  1YS5 A;  3QRC A;  4O3Y A;  5FVN A;  3AA7 B;  4AYD C;  3VE1 A;  4LSI A;  5AFU L;  4FRX A;  4AZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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