4KR4A

Salmonella typhi ompf complex with ampicillin
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
341
structure length
339
Chain Sequence
b'MEIYNKDNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Ampicillin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 55
structure length 339
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr4A00
2XE5A 3UPGA 1E54A 1OSMA 1H6S1 3JTYA 3SYSA 2QTKA 5PRNA 4GCPA 5DL8A 2Y0KA 3T0SA 2Y2XA 5DL6A 2ZFGA 4RJXA 2ODJA 2XG6A 1HXUA 4KR4A 4D5UA 3EMNX 3NSGA 4D64A 3PORA 3PRNA 3SY9A 1MPFA 7PRNA 2J4UP 2PORA 3POXA 2Y0LA 4FSOA 3POQA 4KRAA 3SZDA 8PRNA 3SYBA 3FYXA 2ZLDA 2K4TA 2XE2A 4FSPA 2PRNA 4FT6A 3VZTX 3SY7A 4FRXA 3VZWX 4GCQA 4FRTA 5FVNA 3HWBA 4LSFA 3O0EA 4C69X 1GFMA 4FMSA 3K19A 4AUIA 5DL7A 4LSEA 1OPFA 1PRNA 1BT9A 3HW9A 4LSHA 3WI4A 3WI5A 1PHOA 5JDPA 3VY8X 3VZUX 4RJWA 3SZVA 4FOZA 4BUMX 4JFBA 2FGQX 1GFPA 2OMFA 3UU2A 1GFNA 2XE3A 3VY9X 3T20A 2Y0HA 1HXTA 2FGRA 2XE1A 1GFOA 5DL5A 2O4VA 4GCSA 1HXXA 4LSIA 3T24A 1BH3A 4D65A 6PRNA 3POUA 1GFQA 2J1NA 3A2SX 4KR8A
chains in the Genus database with same CATH superfamily
4O49A 1BXWA 3KZIO 2IWWA 2XE5A 2R88A 5G26A 4Z3TA 3UPGA 1IZNB 1E54A 3A0BO 1OSMA 2F1VA 2R4OA 2W81C 3AA6A 4N74A 4XNKA 3TZGA 4F4BA 5E79O 3LK2A 2KC0A 3HOLA 5KAFO 4O3XB 1H6S1 1QJ9A 2JQYA 2X9KA 3VE2A 2R8AA 1IZNA 2WVPA 3JTYA 4G75A 4UB8O 2MHLA 3SYSA 2QTKA 3DWNA 4N58A 2JMMA 5PRNA 2YNKA 4GCPA 2Y0KA 5DL8A 5GTIO 2LFUA 2YPVA 2N2MA 2Y2XA 4FZMA 5DL6A 3T0SA 2ZFGA 4PR7A 5G39A 4AKMA 4RJXA 3QRAA 4K3CA 4O4XA 2ODJA 5ADXL 2XG6A 3V8UA 4GHBA 1HXUA 4K3BA 4RLCA 3PQSA 2F1TA 3BRYA 2GE4A 3UAQA 3VE1A 4AYEC 5AFUL 4C4VB 2WJQA 4AFKA 4KR4A 4XNLA 2IWVA 4FZNA 2R4LA 3AA1B 4D5UA 4C00A 3AA0B 1Q9FA 1Q9GA 3EMNX 5D5DA 2WJRA 1ZHZA 3LK41 4C4VA 4FUVA 4RL9A 1MM4A 3DA4A 3NSGA 4D64A 4IL6O 1ZHYA 3A0HO 3AA1A 3PORA 3PRNA 3SY9A 4RLBA 1MPFA 3AA0A 1G90A 7PRNA 4AYID 2J4UP 5IYUA 5GV0A 4N75A 2PORA 3POXA 3PGRA 3G7GA 2Y0LA 2KXPB 3BRZA 3POQA 4FSOA 4AZLA 4KRAA 3SZDA 8PRNA 2LHFA 3FYXA 3SYBA 2ZLDA 3AAAB 4PJ0O 3NJTA 2R4PA 4AYDC 2K4TA 2XE2A 2KXPA 3AA6B 2XTQA 4FSPA 2PRNA 2MNHA 1T16A 4FT6A 4GF4A 3SY7A 2ERVA 3C5OA 3VZTX 4CTDA 1ZHXA 5TISO 4FRXA 3VZWX 4GCQA 3AAAA 2N2LA 4FRTA 4FZLA 4AYNA 1MM5A 3GP6A 2W80C 3DZMA 4G76A 5FVNA 3HWBA 5ADXK 3HOEA 2M07A 4LSFA 3O0EA 4QQ1A 3QRCA 4C69X 1GFMA 4FMSA 3K19A 5AFUK 5KAIO 4AUIA 5DL7A 4B61A 4LSEA 1OPFA 4UB6O 4E1SA 2Y7SA 4O4UA 4PUXA 4E1TA 3BS0A 3WU2O 1PRNA 1BT9A 2KZ7B 3HW9A 2X27X 4LSHA 1ORMA 4FESA 1QJPA 3AA7B 3LK3B 5EE2A 3WI4A 3WI5A 1PHOA 5GTHO 5B5EO 5JDPA 4U9CA 3VY8X 3VZUX 4RJWA 4JCHA 3SZVA 2KZ7A 1P4TA 4AYMC 1S5LO 3JCUO 4FOZA 4BUMX 3AA7A 3LK3A 2K0LA 2XMXA 3DWOX 4FQEA 5G3AA 2R89A 2KDYA 4JFBA 4O3ZA 2FGQX 1GFPA 2OMFA 3KVDD 1GFNA 2XE3A 3UU2A 2AXTO 3VY9X 1THQA 3T20A 2Y0HA 2XTRA 1HXTA 3PGUA 2FGRA 3DA3A 3AAEB 1YS5A 2F1CX 2XE1A 5T5FA 3LK42 4AKRB 1GFOA 4O3WA 1T1LA 5DL5A 2O4VA 4GCSA 1HXXA 4O3YA 4LSIA 2R4NA 3PGSA 5H2FO 3AAEA 3PF1A 1QJ8A 3PQUA 3T24A 1ZHWA 1BH3A 1ZHTA 5G38A 4AKRA 4D65A 6PRNA 3POUA 4N59A 3RBHA 1GFQA 2J1NA 3A2SX 4KR8A 5B66O 2M06A 3LK2B
chains in the Genus database with same CATH topology
4O49A 1BXWA 2XE5A 5G26A 4Z3TA 3UPGA 1IZNB 1E54A 3TZGA 1OSMA 2F1VA 2W81C 4XNKA 3AA6A 4F4BA 3LK2A 2KC0A 3HOLA 4O3XB 1H6S1 1QJ9A 3VE2A 4G75A 1IZNA 3JTYA 3SYSA 2MHLA 2QTKA 5PRNA 4N58A 2JMMA 2YNKA 4GCPA 2Y0KA 5DL8A 4AYID 2LFUA 2YPVA 2N2MA 2Y2XA 4FZMA 5DL6A 3T0SA 2ZFGA 4AKMA 4RJXA 3QRAA 4O4XA 2ODJA 5ADXL 2XG6A 3V8UA 4GHBA 1HXUA 4RLCA 3PQSA 2F1TA 2GE4A 3UAQA 3VE1A 4AYEC 5AFUL 4AFKA 4KR4A 4XNLA 4FZNA 3AA1B 4D5UA 3AA0B 1Q9FA 1Q9GA 3EMNX 5D5DA 1ZHZA 3LK41 4FUVA 4RL9A 1MM4A 3DA4A 3NSGA 4D64A 1ZHYA 3PORA 3AA1A 3PRNA 3SY9A 4RLBA 1MPFA 3AA0A 1G90A 7PRNA 2J4UP 5IYUA 5GV0A 2PORA 3POXA 3G7GA 2Y0LA 2KXPB 4FSOA 3POQA 4AZLA 4KRAA 3SZDA 8PRNA 2LHFA 3FYXA 3SYBA 2ZLDA 3AAAB 4AYDC 2K4TA 2XE2A 2KXPA 3AA6B 2XTQA 4FSPA 2PRNA 2MNHA 4FT6A 4GF4A 3VZTX 3SY7A 2ERVA 3C5OA 1ZHXA 4FRXA 3VZWX 4GCQA 3AAAA 2N2LA 4FRTA 4FZLA 4AYNA 1MM5A 3GP6A 2W80C 4G76A 5FVNA 3HWBA 5ADXK 3HOEA 2M07A 4LSFA 3O0EA 4QQ1A 3QRCA 4C69X 1GFMA 4FMSA 3K19A 5AFUK 4AUIA 5DL7A 4B61A 4LSEA 1OPFA 4E1SA 2Y7SA 4O4UA 4PUXA 4E1TA 1PRNA 1BT9A 2KZ7B 3HW9A 2X27X 4LSHA 1ORMA 4FESA 1QJPA 3AA7B 3LK3B 5EE2A 3WI4A 3WI5A 1PHOA 5JDPA 4U9CA 3VY8X 3VZUX 4RJWA 4JCHA 3SZVA 2KZ7A 1P4TA 4AYMC 4FOZA 4BUMX 3AA7A 3LK3A 2K0LA 2XMXA 2KDYA 4JFBA 4O3ZA 2FGQX 1GFPA 2OMFA 3KVDD 1GFNA 2XE3A 3UU2A 3VY9X 3T20A 1THQA 2Y0HA 2XTRA 1HXTA 2FGRA 3DA3A 3AAEB 1YS5A 2XE1A 5T5FA 3LK42 4AKRB 1GFOA 4O3WA 5DL5A 2O4VA 4GCSA 1HXXA 4O3YA 4LSIA 3AAEA 3PQUA 1QJ8A 3T24A 1ZHWA 1BH3A 1ZHTA 4D65A 4AKRA 6PRNA 3POUA 4N59A 3RBHA 1GFQA 2J1NA 3A2SX 4KR8A 2M06A 3LK2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE5 A;  3UPG A;  1E54 A;  1OSM A;  1H6S 1;  3JTY A;  3SYS A;  2QTK A;  5PRN A;  4GCP A;  5DL8 A;  2Y0K A;  3T0S A;  2Y2X A;  5DL6 A;  2ZFG A;  4RJX A;  2ODJ A;  2XG6 A;  1HXU A;  4KR4 A;  4D5U A;  3EMN X;  3NSG A;  4D64 A;  3POR A;  3PRN A;  3SY9 A;  1MPF A;  7PRN A;  2J4U P;  2POR A;  3POX A;  2Y0L A;  4FSO A;  3POQ A;  4KRA A;  3SZD A;  8PRN A;  3SYB A;  3FYX A;  2ZLD A;  2K4T A;  2XE2 A;  4FSP A;  2PRN A;  4FT6 A;  3VZT X;  3SY7 A;  4FRX A;  3VZW X;  4GCQ A;  4FRT A;  5FVN A;  3HWB A;  4LSF A;  3O0E A;  4C69 X;  1GFM A;  4FMS A;  3K19 A;  4AUI A;  5DL7 A;  4LSE A;  1OPF A;  1PRN A;  1BT9 A;  3HW9 A;  4LSH A;  3WI4 A;  3WI5 A;  1PHO A;  5JDP A;  3VY8 X;  3VZU X;  4RJW A;  3SZV A;  4FOZ A;  4BUM X;  4JFB A;  2FGQ X;  1GFP A;  2OMF A;  3UU2 A;  1GFN A;  2XE3 A;  3VY9 X;  3T20 A;  2Y0H A;  1HXT A;  2FGR A;  2XE1 A;  1GFO A;  5DL5 A;  2O4V A;  4GCS A;  1HXX A;  4LSI A;  3T24 A;  1BH3 A;  4D65 A;  6PRN A;  3POU A;  1GFQ A;  2J1N A;  3A2S X;  4KR8 A; 
#chains in the Genus database with same CATH topology
 4O49 A;  1BXW A;  3KZI O;  2IWW A;  2XE5 A;  2R88 A;  5G26 A;  4Z3T A;  3UPG A;  1IZN B;  1E54 A;  3A0B O;  1OSM A;  2F1V A;  2R4O A;  2W81 C;  3AA6 A;  4N74 A;  4XNK A;  3TZG A;  4F4B A;  5E79 O;  3LK2 A;  2KC0 A;  3HOL A;  5KAF O;  4O3X B;  1H6S 1;  1QJ9 A;  2JQY A;  2X9K A;  3VE2 A;  2R8A A;  1IZN A;  2WVP A;  3JTY A;  4G75 A;  4UB8 O;  2MHL A;  3SYS A;  2QTK A;  3DWN A;  4N58 A;  2JMM A;  5PRN A;  2YNK A;  4GCP A;  2Y0K A;  5DL8 A;  5GTI O;  2LFU A;  2YPV A;  2N2M A;  2Y2X A;  4FZM A;  5DL6 A;  3T0S A;  2ZFG A;  4PR7 A;  5G39 A;  4AKM A;  4RJX A;  3QRA A;  4K3C A;  4O4X A;  2ODJ A;  5ADX L;  2XG6 A;  3V8U A;  4GHB A;  1HXU A;  4K3B A;  4RLC A;  3PQS A;  2F1T A;  3BRY A;  2GE4 A;  3UAQ A;  3VE1 A;  4AYE C;  5AFU L;  4C4V B;  2WJQ A;  4AFK A;  4KR4 A;  4XNL A;  2IWV A;  4FZN A;  2R4L A;  3AA1 B;  4D5U A;  4C00 A;  3AA0 B;  1Q9F A;  1Q9G A;  3EMN X;  5D5D A;  2WJR A;  1ZHZ A;  3LK4 1;  4C4V A;  4FUV A;  4RL9 A;  1MM4 A;  3DA4 A;  3NSG A;  4D64 A;  4IL6 O;  1ZHY A;  3A0H O;  3AA1 A;  3POR A;  3PRN A;  3SY9 A;  4RLB A;  1MPF A;  3AA0 A;  1G90 A;  7PRN A;  4AYI D;  2J4U P;  5IYU A;  5GV0 A;  4N75 A;  2POR A;  3POX A;  3PGR A;  3G7G A;  2Y0L A;  2KXP B;  3BRZ A;  3POQ A;  4FSO A;  4AZL A;  4KRA A;  3SZD A;  8PRN A;  2LHF A;  3FYX A;  3SYB A;  2ZLD A;  3AAA B;  4PJ0 O;  3NJT A;  2R4P A;  4AYD C;  2K4T A;  2XE2 A;  2KXP A;  3AA6 B;  2XTQ A;  4FSP A;  2PRN A;  2MNH A;  1T16 A;  4FT6 A;  4GF4 A;  3SY7 A;  2ERV A;  3C5O A;  3VZT X;  4CTD A;  1ZHX A;  5TIS O;  4FRX A;  3VZW X;  4GCQ A;  3AAA A;  2N2L A;  4FRT A;  4FZL A;  4AYN A;  1MM5 A;  3GP6 A;  2W80 C;  3DZM A;  4G76 A;  5FVN A;  3HWB A;  5ADX K;  3HOE A;  2M07 A;  4LSF A;  3O0E A;  4QQ1 A;  3QRC A;  4C69 X;  1GFM A;  4FMS A;  3K19 A;  5AFU K;  5KAI O;  4AUI A;  5DL7 A;  4B61 A;  4LSE A;  1OPF A;  4UB6 O;  4E1S A;  2Y7S A;  4O4U A;  4PUX A;  4E1T A;  3BS0 A;  3WU2 O;  1PRN A;  1BT9 A;  2KZ7 B;  3HW9 A;  2X27 X;  4LSH A;  1ORM A;  4FES A;  1QJP A;  3AA7 B;  3LK3 B;  5EE2 A;  3WI4 A;  3WI5 A;  1PHO A;  5GTH O;  5B5E O;  5JDP A;  4U9C A;  3VY8 X;  3VZU X;  4RJW A;  4JCH A;  3SZV A;  2KZ7 A;  1P4T A;  4AYM C;  1S5L O;  3JCU O;  4FOZ A;  4BUM X;  3AA7 A;  3LK3 A;  2K0L A;  2XMX A;  3DWO X;  4FQE A;  5G3A A;  2R89 A;  2KDY A;  4JFB A;  4O3Z A;  2FGQ X;  1GFP A;  2OMF A;  3KVD D;  1GFN A;  2XE3 A;  3UU2 A;  2AXT O;  3VY9 X;  1THQ A;  3T20 A;  2Y0H A;  2XTR A;  1HXT A;  3PGU A;  2FGR A;  3DA3 A;  3AAE B;  1YS5 A;  2F1C X;  2XE1 A;  5T5F A;  3LK4 2;  4AKR B;  1GFO A;  4O3W A;  1T1L A;  5DL5 A;  2O4V A;  4GCS A;  1HXX A;  4O3Y A;  4LSI A;  2R4N A;  3PGS A;  5H2F O;  3AAE A;  3PF1 A;  1QJ8 A;  3PQU A;  3T24 A;  1ZHW A;  1BH3 A;  1ZHT A;  5G38 A;  4AKR A;  4D65 A;  6PRN A;  3POU A;  4N59 A;  3RBH A;  1GFQ A;  2J1N A;  3A2S X;  4KR8 A;  5B66 O;  2M06 A;  3LK2 B; 
#chains in the Genus database with same CATH homology
 4O49 A;  1BXW A;  2XE5 A;  5G26 A;  4Z3T A;  3UPG A;  1IZN B;  1E54 A;  3TZG A;  1OSM A;  2F1V A;  2W81 C;  4XNK A;  3AA6 A;  4F4B A;  3LK2 A;  2KC0 A;  3HOL A;  4O3X B;  1H6S 1;  1QJ9 A;  3VE2 A;  4G75 A;  1IZN A;  3JTY A;  3SYS A;  2MHL A;  2QTK A;  5PRN A;  4N58 A;  2JMM A;  2YNK A;  4GCP A;  2Y0K A;  5DL8 A;  4AYI D;  2LFU A;  2YPV A;  2N2M A;  2Y2X A;  4FZM A;  5DL6 A;  3T0S A;  2ZFG A;  4AKM A;  4RJX A;  3QRA A;  4O4X A;  2ODJ A;  5ADX L;  2XG6 A;  3V8U A;  4GHB A;  1HXU A;  4RLC A;  3PQS A;  2F1T A;  2GE4 A;  3UAQ A;  3VE1 A;  4AYE C;  5AFU L;  4AFK A;  4KR4 A;  4XNL A;  4FZN A;  3AA1 B;  4D5U A;  3AA0 B;  1Q9F A;  1Q9G A;  3EMN X;  5D5D A;  1ZHZ A;  3LK4 1;  4FUV A;  4RL9 A;  1MM4 A;  3DA4 A;  3NSG A;  4D64 A;  1ZHY A;  3POR A;  3AA1 A;  3PRN A;  3SY9 A;  4RLB A;  1MPF A;  3AA0 A;  1G90 A;  7PRN A;  2J4U P;  5IYU A;  5GV0 A;  2POR A;  3POX A;  3G7G A;  2Y0L A;  2KXP B;  4FSO A;  3POQ A;  4AZL A;  4KRA A;  3SZD A;  8PRN A;  2LHF A;  3FYX A;  3SYB A;  2ZLD A;  3AAA B;  4AYD C;  2K4T A;  2XE2 A;  2KXP A;  3AA6 B;  2XTQ A;  4FSP A;  2PRN A;  2MNH A;  4FT6 A;  4GF4 A;  3VZT X;  3SY7 A;  2ERV A;  3C5O A;  1ZHX A;  4FRX A;  3VZW X;  4GCQ A;  3AAA A;  2N2L A;  4FRT A;  4FZL A;  4AYN A;  1MM5 A;  3GP6 A;  2W80 C;  4G76 A;  5FVN A;  3HWB A;  5ADX K;  3HOE A;  2M07 A;  4LSF A;  3O0E A;  4QQ1 A;  3QRC A;  4C69 X;  1GFM A;  4FMS A;  3K19 A;  5AFU K;  4AUI A;  5DL7 A;  4B61 A;  4LSE A;  1OPF A;  4E1S A;  2Y7S A;  4O4U A;  4PUX A;  4E1T A;  1PRN A;  1BT9 A;  2KZ7 B;  3HW9 A;  2X27 X;  4LSH A;  1ORM A;  4FES A;  1QJP A;  3AA7 B;  3LK3 B;  5EE2 A;  3WI4 A;  3WI5 A;  1PHO A;  5JDP A;  4U9C A;  3VY8 X;  3VZU X;  4RJW A;  4JCH A;  3SZV A;  2KZ7 A;  1P4T A;  4AYM C;  4FOZ A;  4BUM X;  3AA7 A;  3LK3 A;  2K0L A;  2XMX A;  2KDY A;  4JFB A;  4O3Z A;  2FGQ X;  1GFP A;  2OMF A;  3KVD D;  1GFN A;  2XE3 A;  3UU2 A;  3VY9 X;  3T20 A;  1THQ A;  2Y0H A;  2XTR A;  1HXT A;  2FGR A;  3DA3 A;  3AAE B;  1YS5 A;  2XE1 A;  5T5F A;  3LK4 2;  4AKR B;  1GFO A;  4O3W A;  5DL5 A;  2O4V A;  4GCS A;  1HXX A;  4O3Y A;  4LSI A;  3AAE A;  3PQU A;  1QJ8 A;  3T24 A;  1ZHW A;  1BH3 A;  1ZHT A;  4D65 A;  4AKR A;  6PRN A;  3POU A;  4N59 A;  3RBH A;  1GFQ A;  2J1N A;  3A2S X;  4KR8 A;  2M06 A;  3LK2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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