4KR4A

Salmonella typhi ompf complex with ampicillin
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
341
structure length
339
Chain Sequence
MEIYNKDNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Ampicillin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 55
structure length 339
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr4A00
5DL5A 4D65A 3WI4A 5DL8A 4GCSA 5JDPA 2ZLDA 2XE5A 3A2SX 3VY8X 1HXUA 1PHOA 5FVNA 4LSFA 3WI5A 3NSGA 4LSIA 4LSHA 3HWBA 3JTYA 3VZUX 2XE3A 4RJWA 3SYSA 3T24A 4LSEA 1GFQA 2O4VA 3O0EA 3POXA 3PRNA 3UU2A 1OSMA 4D64A 1MPFA 4JFBA 4AUIA 3SY9A 2QTKA 2FGRA 3K19A 2XG6A 3SZVA 4C69X 1GFMA 8PRNA 4GCQA 2XE2A 2K4TA 2PORA 6PRNA 4FOZA 4RJXA 2Y0HA 3SYBA 1HXTA 4FMSA 3T20A 3EMNX 2Y0LA 2J1NA 3SY7A 3SZDA 1GFOA 4FT6A 1GFPA 3HW9A 3FYXA 4BUMX 2ZFGA 1BH3A 1H6S1 5PRNA 3POQA 2FGQX 4KR8A 4KRAA 1E54A 2Y0KA 1BT9A 2XE1A 1GFNA 4FSPA 4GCPA 3PORA 4FRTA 3VY9X 1PRNA 4FSOA 7PRNA 2OMFA 2J4UP 2ODJA 4D5UA 1OPFA 5DL7A 3VZTX 3POUA 3VZWX 5DL6A 3UPGA 1HXXA 3T0SA 4FRXA 2Y2XA 4KR4A 2PRNA
chains in the Genus database with same CATH superfamily
3KVDD 2WVPA 4N59A 1THQA 4PJ0O 3PQUA 2JMMA 4O3WA 1ORMA 3AA7B 5DL5A 4D65A 4IL6O 1QJPA 3DA3A 5EE2A 3WI4A 3HOEA 5DL8A 3C5OA 2IWWA 4GCSA 2R89A 2M06A 4O3YA 5JDPA 2ZLDA 5E79O 2YPVA 2XE5A 2R88A 3A2SX 5G38A 3VY8X 1HXUA 1PHOA 3AAAA 4C4VB 3QRAA 1ZHYA 2LHFA 2XTRA 4LSFA 1T16A 2R4LA 5FVNA 5G39A 3NSGA 3WI5A 5AFUL 1ZHWA 4AKRB 4LSIA 2LFUA 4LSHA 4N58A 1Q9GA 4G75A 3HWBA 4E1SA 5G26A 3JTYA 3DZMA 3VZUX 2XMXA 3A0HO 3DWOX 2X27X 2XE3A 4RJWA 2R4NA 3QRCA 4RLBA 3SYSA 4LSEA 3T24A 2WJRA 4GF4A 1GFQA 1MM5A 5G3AA 2KC0A 3UAQA 4C00A 2O4VA 5IYUA 3O0EA 3POXA 1QJ9A 3G7GA 3PRNA 4O3ZA 5GTIO 3UU2A 4AKMA 2W81C 5H2FO 1OSMA 4D64A 1MPFA 4JFBA 4AUIA 1ZHTA 4FESA 4JCHA 2JQYA 2QTKA 4K3CA 4O4UA 3SY9A 1ZHZA 1QJ8A 2FGRA 2YNKA 4UB8O 2KXPB 3LK41 4AYDC 3K19A 4RL9A 3AAAB 2XG6A 4N74A 3SZVA 4AYEC 5B5EO 1T1LA 4C69X 2KXPA 5AFUK 1GFMA 3V8UA 8PRNA 3LK2A 2XE2A 4GCQA 3BRYA 2GE4A 2K4TA 2PORA 3VE1A 4N75A 4AYNA 6PRNA 1IZNB 4RLCA 4UB6O 4FZLA 2KDYA 4FOZA 4RJXA 2Y0HA 3SYBA 1HXTA 3LK3B 3AA1B 4FMSA 4QQ1A 2F1TA 3EMNX 1IZNA 3T20A 2Y0LA 2J1NA 3SY7A 3AA6A 3LK3A 4FZNA 3AA1A 2MNHA 2ERVA 3PGUA 1ZHXA 4FQEA 4AYID 3PF1A 3SZDA 1MM4A 5T5FA 4B61A 1GFOA 3AAEB 1G90A 4FT6A 1GFPA 2M07A 3HW9A 3FYXA 2R4PA 3PQSA 5ADXK 1S5LO 3AAEA 3LK2B 4BUMX 2ZFGA 1BH3A 2WJQA 5B66O 5KAIO 5KAFO 5ADXL 1H6S1 2IWVA 5PRNA 3POQA 2X9KA 3AA0B 3BRZA 3PGRA 4PR7A 2FGQX 4KR8A 3RBHA 4KRAA 1E54A 2Y0KA 4FUVA 3AA6B 3AA0A 1BT9A 4GHBA 3VE2A 3NJTA 4U9CA 2XE1A 1GFNA 3HOLA 3JCUO 4FSPA 4K3BA 4O4XA 4GCPA 5GV0A 3PORA 5TISO 4CTDA 4FRTA 3VY9X 4AYMC 1PRNA 4FSOA 7PRNA 2OMFA 4PUXA 2XTQA 2J4UP 3WU2O 5D5DA 4FZMA 2W80C 1YS5A 1Q9FA 2KZ7B 2N2MA 4F4BA 2ODJA 4D5UA 3AA7A 1OPFA 4XNLA 4G76A 2F1CX 2KZ7A 2MHLA 3GP6A 5DL7A 3VZTX 2F1VA 4AZLA 5GTHO 4KR4A 1BXWA 3A0BO 3POUA 3VZWX 3BS0A 3DA4A 5DL6A 4O3XB 3UPGA 4C4VA 1HXXA 2Y7SA 2R4OA 4AKRA 4E1TA 3T0SA 4O49A 4FRXA 3TZGA 3LK42 3KZIO 3DWNA 2K0LA 2N2LA 4AFKA 2AXTO 3PGSA 2Y2XA 2R8AA 4XNKA 4Z3TA 1P4TA 2PRNA
chains in the Genus database with same CATH topology
3KVDD 4N59A 1THQA 3PQUA 2JMMA 4O3WA 1ORMA 3AA7B 5DL5A 4D65A 5EE2A 1QJPA 3DA3A 3WI4A 3HOEA 5DL8A 3C5OA 4GCSA 4O3YA 2M06A 5JDPA 2ZLDA 2YPVA 2XE5A 3A2SX 3VY8X 1HXUA 1PHOA 3AAAA 3QRAA 1ZHYA 2LHFA 2XTRA 4LSFA 5FVNA 3WI5A 3NSGA 5AFUL 1ZHWA 4AKRB 4LSIA 2LFUA 4LSHA 4N58A 1Q9GA 4G75A 3HWBA 4E1SA 5G26A 3JTYA 3VZUX 2XMXA 2XE3A 4RJWA 4RLBA 3SYSA 3QRCA 3T24A 4LSEA 4GF4A 1GFQA 1MM5A 2KC0A 3UAQA 2O4VA 5IYUA 3O0EA 3POXA 1QJ9A 3G7GA 3PRNA 4O3ZA 4AKMA 3UU2A 2W81C 1OSMA 4D64A 1MPFA 4JFBA 4AUIA 1ZHTA 4FESA 4JCHA 4O4UA 2QTKA 3SY9A 1ZHZA 1QJ8A 2FGRA 2YNKA 2KXPB 3LK41 4AYDC 3K19A 4RL9A 3AAAB 2XG6A 4AYEC 3SZVA 4C69X 2KXPA 5AFUK 1GFMA 3V8UA 8PRNA 3LK2A 2XE2A 4GCQA 3VE1A 2GE4A 2K4TA 2PORA 4AYNA 6PRNA 1IZNB 4RLCA 4FZLA 2KDYA 4FOZA 4RJXA 2Y0HA 3SYBA 1HXTA 3LK3B 3AA1B 4FMSA 4QQ1A 2F1TA 3EMNX 1IZNA 3T20A 2Y0LA 2J1NA 3SY7A 3AA6A 3LK3A 4FZNA 3AA1A 2MNHA 2ERVA 1ZHXA 4AYID 3SZDA 1MM4A 5T5FA 4B61A 1GFOA 3AAEB 1G90A 4FT6A 1GFPA 2M07A 3HW9A 3FYXA 3PQSA 5ADXK 3AAEA 3LK2B 4BUMX 2ZFGA 1BH3A 5ADXL 1H6S1 5PRNA 3POQA 3AA0B 2FGQX 4KR8A 3RBHA 4KRAA 1E54A 2Y0KA 4FUVA 3AA6B 3AA0A 1BT9A 4GHBA 3VE2A 4U9CA 2XE1A 1GFNA 3HOLA 4FSPA 4O4XA 4GCPA 5GV0A 3PORA 4FRTA 3VY9X 4AYMC 1PRNA 4FSOA 7PRNA 2OMFA 4PUXA 2XTQA 2J4UP 5D5DA 4FZMA 2W80C 1YS5A 1Q9FA 2KZ7B 2N2MA 4F4BA 2ODJA 4D5UA 3AA7A 1OPFA 4XNLA 4G76A 2KZ7A 2MHLA 5DL7A 3GP6A 3VZTX 4AZLA 2F1VA 4KR4A 1BXWA 3POUA 3VZWX 3DA4A 5DL6A 4O3XB 3UPGA 1HXXA 2Y7SA 4AKRA 4E1TA 3T0SA 4O49A 4FRXA 3TZGA 3LK42 2K0LA 2N2LA 4AFKA 2Y2XA 2X27X 4XNKA 4Z3TA 1P4TA 2PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DL5 A;  4D65 A;  3WI4 A;  5DL8 A;  4GCS A;  5JDP A;  2ZLD A;  2XE5 A;  3A2S X;  3VY8 X;  1HXU A;  1PHO A;  5FVN A;  4LSF A;  3WI5 A;  3NSG A;  4LSI A;  4LSH A;  3HWB A;  3JTY A;  3VZU X;  2XE3 A;  4RJW A;  3SYS A;  3T24 A;  4LSE A;  1GFQ A;  2O4V A;  3O0E A;  3POX A;  3PRN A;  3UU2 A;  1OSM A;  4D64 A;  1MPF A;  4JFB A;  4AUI A;  3SY9 A;  2QTK A;  2FGR A;  3K19 A;  2XG6 A;  3SZV A;  4C69 X;  1GFM A;  8PRN A;  4GCQ A;  2XE2 A;  2K4T A;  2POR A;  6PRN A;  4FOZ A;  4RJX A;  2Y0H A;  3SYB A;  1HXT A;  4FMS A;  3T20 A;  3EMN X;  2Y0L A;  2J1N A;  3SY7 A;  3SZD A;  1GFO A;  4FT6 A;  1GFP A;  3HW9 A;  3FYX A;  4BUM X;  2ZFG A;  1BH3 A;  1H6S 1;  5PRN A;  3POQ A;  2FGQ X;  4KR8 A;  4KRA A;  1E54 A;  2Y0K A;  1BT9 A;  2XE1 A;  1GFN A;  4FSP A;  4GCP A;  3POR A;  4FRT A;  3VY9 X;  1PRN A;  4FSO A;  7PRN A;  2OMF A;  2J4U P;  2ODJ A;  4D5U A;  1OPF A;  5DL7 A;  3VZT X;  3POU A;  3VZW X;  5DL6 A;  3UPG A;  1HXX A;  3T0S A;  4FRX A;  2Y2X A;  4KR4 A;  2PRN A; 
#chains in the Genus database with same CATH topology
 3KVD D;  2WVP A;  4N59 A;  1THQ A;  4PJ0 O;  3PQU A;  2JMM A;  4O3W A;  1ORM A;  3AA7 B;  5DL5 A;  4D65 A;  4IL6 O;  1QJP A;  3DA3 A;  5EE2 A;  3WI4 A;  3HOE A;  5DL8 A;  3C5O A;  2IWW A;  4GCS A;  2R89 A;  2M06 A;  4O3Y A;  5JDP A;  2ZLD A;  5E79 O;  2YPV A;  2XE5 A;  2R88 A;  3A2S X;  5G38 A;  3VY8 X;  1HXU A;  1PHO A;  3AAA A;  4C4V B;  3QRA A;  1ZHY A;  2LHF A;  2XTR A;  4LSF A;  1T16 A;  2R4L A;  5FVN A;  5G39 A;  3NSG A;  3WI5 A;  5AFU L;  1ZHW A;  4AKR B;  4LSI A;  2LFU A;  4LSH A;  4N58 A;  1Q9G A;  4G75 A;  3HWB A;  4E1S A;  5G26 A;  3JTY A;  3DZM A;  3VZU X;  2XMX A;  3A0H O;  3DWO X;  2X27 X;  2XE3 A;  4RJW A;  2R4N A;  3QRC A;  4RLB A;  3SYS A;  4LSE A;  3T24 A;  2WJR A;  4GF4 A;  1GFQ A;  1MM5 A;  5G3A A;  2KC0 A;  3UAQ A;  4C00 A;  2O4V A;  5IYU A;  3O0E A;  3POX A;  1QJ9 A;  3G7G A;  3PRN A;  4O3Z A;  5GTI O;  3UU2 A;  4AKM A;  2W81 C;  5H2F O;  1OSM A;  4D64 A;  1MPF A;  4JFB A;  4AUI A;  1ZHT A;  4FES A;  4JCH A;  2JQY A;  2QTK A;  4K3C A;  4O4U A;  3SY9 A;  1ZHZ A;  1QJ8 A;  2FGR A;  2YNK A;  4UB8 O;  2KXP B;  3LK4 1;  4AYD C;  3K19 A;  4RL9 A;  3AAA B;  2XG6 A;  4N74 A;  3SZV A;  4AYE C;  5B5E O;  1T1L A;  4C69 X;  2KXP A;  5AFU K;  1GFM A;  3V8U A;  8PRN A;  3LK2 A;  2XE2 A;  4GCQ A;  3BRY A;  2GE4 A;  2K4T A;  2POR A;  3VE1 A;  4N75 A;  4AYN A;  6PRN A;  1IZN B;  4RLC A;  4UB6 O;  4FZL A;  2KDY A;  4FOZ A;  4RJX A;  2Y0H A;  3SYB A;  1HXT A;  3LK3 B;  3AA1 B;  4FMS A;  4QQ1 A;  2F1T A;  3EMN X;  1IZN A;  3T20 A;  2Y0L A;  2J1N A;  3SY7 A;  3AA6 A;  3LK3 A;  4FZN A;  3AA1 A;  2MNH A;  2ERV A;  3PGU A;  1ZHX A;  4FQE A;  4AYI D;  3PF1 A;  3SZD A;  1MM4 A;  5T5F A;  4B61 A;  1GFO A;  3AAE B;  1G90 A;  4FT6 A;  1GFP A;  2M07 A;  3HW9 A;  3FYX A;  2R4P A;  3PQS A;  5ADX K;  1S5L O;  3AAE A;  3LK2 B;  4BUM X;  2ZFG A;  1BH3 A;  2WJQ A;  5B66 O;  5KAI O;  5KAF O;  5ADX L;  1H6S 1;  2IWV A;  5PRN A;  3POQ A;  2X9K A;  3AA0 B;  3BRZ A;  3PGR A;  4PR7 A;  2FGQ X;  4KR8 A;  3RBH A;  4KRA A;  1E54 A;  2Y0K A;  4FUV A;  3AA6 B;  3AA0 A;  1BT9 A;  4GHB A;  3VE2 A;  3NJT A;  4U9C A;  2XE1 A;  1GFN A;  3HOL A;  3JCU O;  4FSP A;  4K3B A;  4O4X A;  4GCP A;  5GV0 A;  3POR A;  5TIS O;  4CTD A;  4FRT A;  3VY9 X;  4AYM C;  1PRN A;  4FSO A;  7PRN A;  2OMF A;  4PUX A;  2XTQ A;  2J4U P;  3WU2 O;  5D5D A;  4FZM A;  2W80 C;  1YS5 A;  1Q9F A;  2KZ7 B;  2N2M A;  4F4B A;  2ODJ A;  4D5U A;  3AA7 A;  1OPF A;  4XNL A;  4G76 A;  2F1C X;  2KZ7 A;  2MHL A;  3GP6 A;  5DL7 A;  3VZT X;  2F1V A;  4AZL A;  5GTH O;  4KR4 A;  1BXW A;  3A0B O;  3POU A;  3VZW X;  3BS0 A;  3DA4 A;  5DL6 A;  4O3X B;  3UPG A;  4C4V A;  1HXX A;  2Y7S A;  2R4O A;  4AKR A;  4E1T A;  3T0S A;  4O49 A;  4FRX A;  3TZG A;  3LK4 2;  3KZI O;  3DWN A;  2K0L A;  2N2L A;  4AFK A;  2AXT O;  3PGS A;  2Y2X A;  2R8A A;  4XNK A;  4Z3T A;  1P4T A;  2PRN A; 
#chains in the Genus database with same CATH homology
 3KVD D;  4N59 A;  1THQ A;  3PQU A;  2JMM A;  4O3W A;  1ORM A;  3AA7 B;  5DL5 A;  4D65 A;  5EE2 A;  1QJP A;  3DA3 A;  3WI4 A;  3HOE A;  5DL8 A;  3C5O A;  4GCS A;  4O3Y A;  2M06 A;  5JDP A;  2ZLD A;  2YPV A;  2XE5 A;  3A2S X;  3VY8 X;  1HXU A;  1PHO A;  3AAA A;  3QRA A;  1ZHY A;  2LHF A;  2XTR A;  4LSF A;  5FVN A;  3WI5 A;  3NSG A;  5AFU L;  1ZHW A;  4AKR B;  4LSI A;  2LFU A;  4LSH A;  4N58 A;  1Q9G A;  4G75 A;  3HWB A;  4E1S A;  5G26 A;  3JTY A;  3VZU X;  2XMX A;  2XE3 A;  4RJW A;  4RLB A;  3SYS A;  3QRC A;  3T24 A;  4LSE A;  4GF4 A;  1GFQ A;  1MM5 A;  2KC0 A;  3UAQ A;  2O4V A;  5IYU A;  3O0E A;  3POX A;  1QJ9 A;  3G7G A;  3PRN A;  4O3Z A;  4AKM A;  3UU2 A;  2W81 C;  1OSM A;  4D64 A;  1MPF A;  4JFB A;  4AUI A;  1ZHT A;  4FES A;  4JCH A;  4O4U A;  2QTK A;  3SY9 A;  1ZHZ A;  1QJ8 A;  2FGR A;  2YNK A;  2KXP B;  3LK4 1;  4AYD C;  3K19 A;  4RL9 A;  3AAA B;  2XG6 A;  4AYE C;  3SZV A;  4C69 X;  2KXP A;  5AFU K;  1GFM A;  3V8U A;  8PRN A;  3LK2 A;  2XE2 A;  4GCQ A;  3VE1 A;  2GE4 A;  2K4T A;  2POR A;  4AYN A;  6PRN A;  1IZN B;  4RLC A;  4FZL A;  2KDY A;  4FOZ A;  4RJX A;  2Y0H A;  3SYB A;  1HXT A;  3LK3 B;  3AA1 B;  4FMS A;  4QQ1 A;  2F1T A;  3EMN X;  1IZN A;  3T20 A;  2Y0L A;  2J1N A;  3SY7 A;  3AA6 A;  3LK3 A;  4FZN A;  3AA1 A;  2MNH A;  2ERV A;  1ZHX A;  4AYI D;  3SZD A;  1MM4 A;  5T5F A;  4B61 A;  1GFO A;  3AAE B;  1G90 A;  4FT6 A;  1GFP A;  2M07 A;  3HW9 A;  3FYX A;  3PQS A;  5ADX K;  3AAE A;  3LK2 B;  4BUM X;  2ZFG A;  1BH3 A;  5ADX L;  1H6S 1;  5PRN A;  3POQ A;  3AA0 B;  2FGQ X;  4KR8 A;  3RBH A;  4KRA A;  1E54 A;  2Y0K A;  4FUV A;  3AA6 B;  3AA0 A;  1BT9 A;  4GHB A;  3VE2 A;  4U9C A;  2XE1 A;  1GFN A;  3HOL A;  4FSP A;  4O4X A;  4GCP A;  5GV0 A;  3POR A;  4FRT A;  3VY9 X;  4AYM C;  1PRN A;  4FSO A;  7PRN A;  2OMF A;  4PUX A;  2XTQ A;  2J4U P;  5D5D A;  4FZM A;  2W80 C;  1YS5 A;  1Q9F A;  2KZ7 B;  2N2M A;  4F4B A;  2ODJ A;  4D5U A;  3AA7 A;  1OPF A;  4XNL A;  4G76 A;  2KZ7 A;  2MHL A;  5DL7 A;  3GP6 A;  3VZT X;  4AZL A;  2F1V A;  4KR4 A;  1BXW A;  3POU A;  3VZW X;  3DA4 A;  5DL6 A;  4O3X B;  3UPG A;  1HXX A;  2Y7S A;  4AKR A;  4E1T A;  3T0S A;  4O49 A;  4FRX A;  3TZG A;  3LK4 2;  2K0L A;  2N2L A;  4AFK A;  2Y2X A;  2X27 X;  4XNK A;  4Z3T A;  1P4T A;  2PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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