4KR4A

Salmonella typhi ompf complex with ampicillin
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
341
structure length
339
Chain Sequence
MEIYNKDNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Ampicillin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
total genus 55
structure length 339
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr4A00
3O0EA 6PRNA 2Y0HA 3SY7A 4GCQA 3VY8X 2Y0KA 1GFPA 2O4VA 2J4UP 1MPFA 1H6S1 5JDPA 3POXA 4JFBA 4D5UA 1PHOA 2ZFGA 3EMNX 4FSPA 2FGQX 7PRNA 3VZUX 4C69X 8PRNA 1GFQA 3POQA 2XE3A 5PRNA 2J1NA 2XE2A 4RJXA 3SYSA 4FSOA 1HXUA 1HXTA 3SZDA 4D65A 4FRXA 4KR4A 2OMFA 2Y0LA 3FYXA 2PORA 5DL7A 4D64A 3NSGA 4FMSA 5DL5A 3HWBA 4FOZA 2Y2XA 3HW9A 3A2SX 3K19A 4AUIA 3WI4A 2XG6A 1BT9A 1GFOA 4FRTA 2ODJA 1HXXA 3VY9X 3PORA 2FGRA 4KR8A 3PRNA 3SY9A 3T24A 4LSFA 2K4TA 3T20A 3SZVA 3VZWX 5DL8A 2XE1A 3POUA 3UU2A 1E54A 1GFNA 5FVNA 3SYBA 4GCPA 4RJWA 2QTKA 1OSMA 1BH3A 2XE5A 4LSIA 3WI5A 3UPGA 2PRNA 2ZLDA 3VZTX 4FT6A 1GFMA 4GCSA 4BUMX 4LSEA 5DL6A 3T0SA 1OPFA 4LSHA 4KRAA 3JTYA 1PRNA
chains in the Genus database with same CATH superfamily
4G76A 3AA6A 5AFUK 1ZHWA 3O0EA 1Q9FA 5B5EO 6PRNA 2GE4A 4E1TA 2XTRA 2Y0HA 4E1SA 3KVDD 1T16A 3SY7A 2X27X 4GCQA 4PJ0O 5ADXL 4Z3TA 3VY8X 4XNLA 4AYNA 2Y0KA 5D5DA 4AKRA 4N59A 4AKRB 1GFPA 3BS0A 1ZHTA 2O4VA 2R8AA 4U9CA 2K0LA 2WJQA 5GTIO 2R88A 3LK2B 3LK2A 2J4UP 1MPFA 3DA3A 1H6S1 5JDPA 2IWVA 5GTHO 3POXA 1ZHXA 4JFBA 4D5UA 1PHOA 2ZFGA 3EMNX 4FSPA 5G26A 2FGQX 2JMMA 4G75A 2W80C 3A0BO 3BRZA 1G90A 4FZNA 4K3BA 4AYMC 3AAAB 7PRNA 2N2MA 2R4PA 3VZUX 4CTDA 1IZNA 2F1TA 4C69X 2KDYA 8PRNA 1GFQA 3POQA 2XE3A 5G3AA 4FESA 3C5OA 5PRNA 2J1NA 2N2LA 3AAEA 1P4TA 5E79O 3AA6B 2XE2A 4RJXA 4N74A 3SYSA 4C00A 4FSOA 1HXUA 1HXTA 3SZDA 5EE2A 3VE2A 4D65A 2XTQA 3AA0A 2KXPA 2R4NA 2YNKA 3AA0B 3HOEA 3LK41 4FRXA 4KR4A 3LK3B 3LK3A 1ZHZA 3HOLA 2OMFA 1BXWA 2F1VA 2R4LA 2F1CX 2R89A 5G38A 2Y0LA 3FYXA 4N75A 2PORA 4FZMA 5DL7A 4D64A 3NSGA 4FMSA 3PQSA 1QJ8A 2WVPA 5DL5A 5ADXK 2AXTO 3HWBA 4QQ1A 4FOZA 2Y2XA 2KC0A 1Q9GA 3HW9A 3A2SX 3K19A 4XNKA 4O3WA 4AUIA 3VE1A 4RLBA 3WI4A 2XG6A 1BT9A 3WU2O 4O3XB 4UB6O 4RL9A 1GFOA 5GV0A 2LFUA 2XMXA 4FRTA 3PF1A 2ODJA 4O49A 1HXXA 4O4UA 2WJRA 5KAFO 1IZNB 2YPVA 2JQYA 1ORMA 3QRAA 3DZMA 3VY9X 3QRCA 4GF4A 3PORA 3AAEB 5T5FA 5B66O 3LK42 2MNHA 3TZGA 2FGRA 1YS5A 2KZ7A 5H2FO 5G39A 4FZLA 5KAIO 3GP6A 4KR8A 1ZHYA 2KXPB 3PRNA 3SY9A 3DWOX 1QJPA 2R4OA 3T24A 4LSFA 2K4TA 3NJTA 3T20A 1S5LO 3PQUA 5IYUA 3SZVA 4F4BA 3PGRA 3VZWX 4RLCA 4JCHA 4O3ZA 2XE1A 3POUA 5DL8A 4B61A 4AFKA 3UU2A 1E54A 1GFNA 2LHFA 1QJ9A 3DA4A 3KZIO 3AA1B 3AA1A 3JCUO 3PGUA 5FVNA 3SYBA 2Y7SA 4GCPA 4RJWA 3G7GA 4AYEC 2QTKA 3PGSA 1OSMA 1BH3A 2XE5A 3V8UA 5TISO 4LSIA 1T1LA 3WI5A 4PR7A 4AKMA 4C4VB 3BRYA 4C4VA 2IWWA 2M06A 1MM5A 3UPGA 2ERVA 3A0HO 3RBHA 2PRNA 2KZ7B 4FUVA 2ZLDA 4PUXA 3VZTX 4AYDC 4IL6O 3UAQA 4AYID 4FQEA 4FT6A 1GFMA 4GCSA 4UB8O 4BUMX 2MHLA 2M07A 2W81C 4AZLA 1MM4A 4LSEA 5DL6A 3T0SA 4K3CA 5AFUL 3DWNA 4GHBA 3AAAA 1THQA 1OPFA 2X9KA 3AA7B 3AA7A 4N58A 4O4XA 4LSHA 4O3YA 4KRAA 3JTYA 1PRNA
chains in the Genus database with same CATH topology
4G76A 3AA6A 5AFUK 1ZHWA 3O0EA 1Q9FA 6PRNA 2GE4A 4E1TA 2XTRA 2Y0HA 4E1SA 3KVDD 3SY7A 2X27X 4GCQA 5ADXL 4Z3TA 3VY8X 4XNLA 4AYNA 2Y0KA 5D5DA 4AKRA 4N59A 4AKRB 1GFPA 1ZHTA 2O4VA 4U9CA 2K0LA 3LK2B 3LK2A 2J4UP 1MPFA 3DA3A 1H6S1 5JDPA 3POXA 1ZHXA 4JFBA 4D5UA 1PHOA 2ZFGA 3EMNX 4FSPA 5G26A 2FGQX 2JMMA 4G75A 2W80C 4FZNA 4AYMC 3AAAB 7PRNA 2N2MA 3VZUX 1IZNA 2F1TA 4C69X 2KDYA 8PRNA 1GFQA 3POQA 2XE3A 4FESA 3C5OA 5PRNA 2J1NA 2N2LA 3AAEA 1P4TA 3AA6B 2XE2A 4RJXA 3SYSA 4FSOA 1HXUA 1HXTA 3SZDA 5EE2A 3VE2A 4D65A 2XTQA 3AA0A 2KXPA 2YNKA 3AA0B 3HOEA 3LK41 4FRXA 4KR4A 3LK3B 3LK3A 1ZHZA 3HOLA 2OMFA 1BXWA 2F1VA 2Y0LA 3FYXA 2PORA 4FZMA 5DL7A 4D64A 3NSGA 4FMSA 3PQSA 1QJ8A 5DL5A 5ADXK 3HWBA 4QQ1A 4FOZA 2Y2XA 2KC0A 1Q9GA 3HW9A 3A2SX 3K19A 4XNKA 4O3WA 4AUIA 3VE1A 4RLBA 3WI4A 2XG6A 1BT9A 5GV0A 4O3XB 1G90A 4RL9A 1GFOA 2LFUA 2XMXA 4FRTA 2ODJA 4O49A 1HXXA 4O4UA 1IZNB 2YPVA 1ORMA 3QRAA 3VY9X 3QRCA 4GF4A 3PORA 3AAEB 5T5FA 3LK42 2MNHA 3TZGA 2FGRA 1YS5A 2KZ7A 4FZLA 3GP6A 4KR8A 1ZHYA 2KXPB 3PRNA 3SY9A 1QJPA 3T24A 4LSFA 2K4TA 3T20A 3PQUA 5IYUA 3SZVA 4F4BA 3VZWX 4RLCA 4JCHA 4O3ZA 2XE1A 3POUA 5DL8A 4B61A 4AFKA 3UU2A 1E54A 1GFNA 2LHFA 1QJ9A 3DA4A 3AA1B 3AA1A 5FVNA 3SYBA 2Y7SA 4GCPA 4RJWA 3G7GA 4AYEC 2QTKA 1OSMA 1BH3A 2XE5A 3V8UA 4LSIA 3WI5A 4AKMA 2M06A 1MM5A 3UPGA 2ERVA 3RBHA 2PRNA 2KZ7B 4FUVA 2ZLDA 4PUXA 3VZTX 4AYDC 3UAQA 4AYID 4FT6A 1GFMA 4GCSA 4BUMX 2MHLA 2M07A 2W81C 4AZLA 1MM4A 4LSEA 5DL6A 3T0SA 5AFUL 4GHBA 3AAAA 1THQA 1OPFA 3AA7B 3AA7A 4N58A 4O4XA 4LSHA 4O3YA 4KRAA 3JTYA 1PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O0E A;  6PRN A;  2Y0H A;  3SY7 A;  4GCQ A;  3VY8 X;  2Y0K A;  1GFP A;  2O4V A;  2J4U P;  1MPF A;  1H6S 1;  5JDP A;  3POX A;  4JFB A;  4D5U A;  1PHO A;  2ZFG A;  3EMN X;  4FSP A;  2FGQ X;  7PRN A;  3VZU X;  4C69 X;  8PRN A;  1GFQ A;  3POQ A;  2XE3 A;  5PRN A;  2J1N A;  2XE2 A;  4RJX A;  3SYS A;  4FSO A;  1HXU A;  1HXT A;  3SZD A;  4D65 A;  4FRX A;  4KR4 A;  2OMF A;  2Y0L A;  3FYX A;  2POR A;  5DL7 A;  4D64 A;  3NSG A;  4FMS A;  5DL5 A;  3HWB A;  4FOZ A;  2Y2X A;  3HW9 A;  3A2S X;  3K19 A;  4AUI A;  3WI4 A;  2XG6 A;  1BT9 A;  1GFO A;  4FRT A;  2ODJ A;  1HXX A;  3VY9 X;  3POR A;  2FGR A;  4KR8 A;  3PRN A;  3SY9 A;  3T24 A;  4LSF A;  2K4T A;  3T20 A;  3SZV A;  3VZW X;  5DL8 A;  2XE1 A;  3POU A;  3UU2 A;  1E54 A;  1GFN A;  5FVN A;  3SYB A;  4GCP A;  4RJW A;  2QTK A;  1OSM A;  1BH3 A;  2XE5 A;  4LSI A;  3WI5 A;  3UPG A;  2PRN A;  2ZLD A;  3VZT X;  4FT6 A;  1GFM A;  4GCS A;  4BUM X;  4LSE A;  5DL6 A;  3T0S A;  1OPF A;  4LSH A;  4KRA A;  3JTY A;  1PRN A; 
#chains in the Genus database with same CATH topology
 4G76 A;  3AA6 A;  5AFU K;  1ZHW A;  3O0E A;  1Q9F A;  5B5E O;  6PRN A;  2GE4 A;  4E1T A;  2XTR A;  2Y0H A;  4E1S A;  3KVD D;  1T16 A;  3SY7 A;  2X27 X;  4GCQ A;  4PJ0 O;  5ADX L;  4Z3T A;  3VY8 X;  4XNL A;  4AYN A;  2Y0K A;  5D5D A;  4AKR A;  4N59 A;  4AKR B;  1GFP A;  3BS0 A;  1ZHT A;  2O4V A;  2R8A A;  4U9C A;  2K0L A;  2WJQ A;  5GTI O;  2R88 A;  3LK2 B;  3LK2 A;  2J4U P;  1MPF A;  3DA3 A;  1H6S 1;  5JDP A;  2IWV A;  5GTH O;  3POX A;  1ZHX A;  4JFB A;  4D5U A;  1PHO A;  2ZFG A;  3EMN X;  4FSP A;  5G26 A;  2FGQ X;  2JMM A;  4G75 A;  2W80 C;  3A0B O;  3BRZ A;  1G90 A;  4FZN A;  4K3B A;  4AYM C;  3AAA B;  7PRN A;  2N2M A;  2R4P A;  3VZU X;  4CTD A;  1IZN A;  2F1T A;  4C69 X;  2KDY A;  8PRN A;  1GFQ A;  3POQ A;  2XE3 A;  5G3A A;  4FES A;  3C5O A;  5PRN A;  2J1N A;  2N2L A;  3AAE A;  1P4T A;  5E79 O;  3AA6 B;  2XE2 A;  4RJX A;  4N74 A;  3SYS A;  4C00 A;  4FSO A;  1HXU A;  1HXT A;  3SZD A;  5EE2 A;  3VE2 A;  4D65 A;  2XTQ A;  3AA0 A;  2KXP A;  2R4N A;  2YNK A;  3AA0 B;  3HOE A;  3LK4 1;  4FRX A;  4KR4 A;  3LK3 B;  3LK3 A;  1ZHZ A;  3HOL A;  2OMF A;  1BXW A;  2F1V A;  2R4L A;  2F1C X;  2R89 A;  5G38 A;  2Y0L A;  3FYX A;  4N75 A;  2POR A;  4FZM A;  5DL7 A;  4D64 A;  3NSG A;  4FMS A;  3PQS A;  1QJ8 A;  2WVP A;  5DL5 A;  5ADX K;  2AXT O;  3HWB A;  4QQ1 A;  4FOZ A;  2Y2X A;  2KC0 A;  1Q9G A;  3HW9 A;  3A2S X;  3K19 A;  4XNK A;  4O3W A;  4AUI A;  3VE1 A;  4RLB A;  3WI4 A;  2XG6 A;  1BT9 A;  3WU2 O;  4O3X B;  4UB6 O;  4RL9 A;  1GFO A;  5GV0 A;  2LFU A;  2XMX A;  4FRT A;  3PF1 A;  2ODJ A;  4O49 A;  1HXX A;  4O4U A;  2WJR A;  5KAF O;  1IZN B;  2YPV A;  2JQY A;  1ORM A;  3QRA A;  3DZM A;  3VY9 X;  3QRC A;  4GF4 A;  3POR A;  3AAE B;  5T5F A;  5B66 O;  3LK4 2;  2MNH A;  3TZG A;  2FGR A;  1YS5 A;  2KZ7 A;  5H2F O;  5G39 A;  4FZL A;  5KAI O;  3GP6 A;  4KR8 A;  1ZHY A;  2KXP B;  3PRN A;  3SY9 A;  3DWO X;  1QJP A;  2R4O A;  3T24 A;  4LSF A;  2K4T A;  3NJT A;  3T20 A;  1S5L O;  3PQU A;  5IYU A;  3SZV A;  4F4B A;  3PGR A;  3VZW X;  4RLC A;  4JCH A;  4O3Z A;  2XE1 A;  3POU A;  5DL8 A;  4B61 A;  4AFK A;  3UU2 A;  1E54 A;  1GFN A;  2LHF A;  1QJ9 A;  3DA4 A;  3KZI O;  3AA1 B;  3AA1 A;  3JCU O;  3PGU A;  5FVN A;  3SYB A;  2Y7S A;  4GCP A;  4RJW A;  3G7G A;  4AYE C;  2QTK A;  3PGS A;  1OSM A;  1BH3 A;  2XE5 A;  3V8U A;  5TIS O;  4LSI A;  1T1L A;  3WI5 A;  4PR7 A;  4AKM A;  4C4V B;  3BRY A;  4C4V A;  2IWW A;  2M06 A;  1MM5 A;  3UPG A;  2ERV A;  3A0H O;  3RBH A;  2PRN A;  2KZ7 B;  4FUV A;  2ZLD A;  4PUX A;  3VZT X;  4AYD C;  4IL6 O;  3UAQ A;  4AYI D;  4FQE A;  4FT6 A;  1GFM A;  4GCS A;  4UB8 O;  4BUM X;  2MHL A;  2M07 A;  2W81 C;  4AZL A;  1MM4 A;  4LSE A;  5DL6 A;  3T0S A;  4K3C A;  5AFU L;  3DWN A;  4GHB A;  3AAA A;  1THQ A;  1OPF A;  2X9K A;  3AA7 B;  3AA7 A;  4N58 A;  4O4X A;  4LSH A;  4O3Y A;  4KRA A;  3JTY A;  1PRN A; 
#chains in the Genus database with same CATH homology
 4G76 A;  3AA6 A;  5AFU K;  1ZHW A;  3O0E A;  1Q9F A;  6PRN A;  2GE4 A;  4E1T A;  2XTR A;  2Y0H A;  4E1S A;  3KVD D;  3SY7 A;  2X27 X;  4GCQ A;  5ADX L;  4Z3T A;  3VY8 X;  4XNL A;  4AYN A;  2Y0K A;  5D5D A;  4AKR A;  4N59 A;  4AKR B;  1GFP A;  1ZHT A;  2O4V A;  4U9C A;  2K0L A;  3LK2 B;  3LK2 A;  2J4U P;  1MPF A;  3DA3 A;  1H6S 1;  5JDP A;  3POX A;  1ZHX A;  4JFB A;  4D5U A;  1PHO A;  2ZFG A;  3EMN X;  4FSP A;  5G26 A;  2FGQ X;  2JMM A;  4G75 A;  2W80 C;  4FZN A;  4AYM C;  3AAA B;  7PRN A;  2N2M A;  3VZU X;  1IZN A;  2F1T A;  4C69 X;  2KDY A;  8PRN A;  1GFQ A;  3POQ A;  2XE3 A;  4FES A;  3C5O A;  5PRN A;  2J1N A;  2N2L A;  3AAE A;  1P4T A;  3AA6 B;  2XE2 A;  4RJX A;  3SYS A;  4FSO A;  1HXU A;  1HXT A;  3SZD A;  5EE2 A;  3VE2 A;  4D65 A;  2XTQ A;  3AA0 A;  2KXP A;  2YNK A;  3AA0 B;  3HOE A;  3LK4 1;  4FRX A;  4KR4 A;  3LK3 B;  3LK3 A;  1ZHZ A;  3HOL A;  2OMF A;  1BXW A;  2F1V A;  2Y0L A;  3FYX A;  2POR A;  4FZM A;  5DL7 A;  4D64 A;  3NSG A;  4FMS A;  3PQS A;  1QJ8 A;  5DL5 A;  5ADX K;  3HWB A;  4QQ1 A;  4FOZ A;  2Y2X A;  2KC0 A;  1Q9G A;  3HW9 A;  3A2S X;  3K19 A;  4XNK A;  4O3W A;  4AUI A;  3VE1 A;  4RLB A;  3WI4 A;  2XG6 A;  1BT9 A;  5GV0 A;  4O3X B;  1G90 A;  4RL9 A;  1GFO A;  2LFU A;  2XMX A;  4FRT A;  2ODJ A;  4O49 A;  1HXX A;  4O4U A;  1IZN B;  2YPV A;  1ORM A;  3QRA A;  3VY9 X;  3QRC A;  4GF4 A;  3POR A;  3AAE B;  5T5F A;  3LK4 2;  2MNH A;  3TZG A;  2FGR A;  1YS5 A;  2KZ7 A;  4FZL A;  3GP6 A;  4KR8 A;  1ZHY A;  2KXP B;  3PRN A;  3SY9 A;  1QJP A;  3T24 A;  4LSF A;  2K4T A;  3T20 A;  3PQU A;  5IYU A;  3SZV A;  4F4B A;  3VZW X;  4RLC A;  4JCH A;  4O3Z A;  2XE1 A;  3POU A;  5DL8 A;  4B61 A;  4AFK A;  3UU2 A;  1E54 A;  1GFN A;  2LHF A;  1QJ9 A;  3DA4 A;  3AA1 B;  3AA1 A;  5FVN A;  3SYB A;  2Y7S A;  4GCP A;  4RJW A;  3G7G A;  4AYE C;  2QTK A;  1OSM A;  1BH3 A;  2XE5 A;  3V8U A;  4LSI A;  3WI5 A;  4AKM A;  2M06 A;  1MM5 A;  3UPG A;  2ERV A;  3RBH A;  2PRN A;  2KZ7 B;  4FUV A;  2ZLD A;  4PUX A;  3VZT X;  4AYD C;  3UAQ A;  4AYI D;  4FT6 A;  1GFM A;  4GCS A;  4BUM X;  2MHL A;  2M07 A;  2W81 C;  4AZL A;  1MM4 A;  4LSE A;  5DL6 A;  3T0S A;  5AFU L;  4GHB A;  3AAA A;  1THQ A;  1OPF A;  3AA7 B;  3AA7 A;  4N58 A;  4O4X A;  4LSH A;  4O3Y A;  4KRA A;  3JTY A;  1PRN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...