4KR4A

Salmonella typhi ompf complex with ampicillin
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
341
structure length
339
Chain Sequence
MEIYNKDNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Salmonella typhi OmpF complex with Ampicillin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
molecule keywords Outer membrane protein F
total genus 55
structure length 339
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr4A00
3SY7A 1GFOA 3UU2A 3T24A 4KR8A 4RJXA 3O0EA 4GCPA 2FGRA 3VY8X 3POXA 3WI5A 2Y0KA 4LSFA 4LSHA 2Y0LA 4C69X 4KRAA 1PHOA 5DL6A 3FYXA 3POQA 1HXUA 5DL5A 3SY9A 3K19A 3JTYA 2J1NA 3POUA 3NSGA 3WI4A 1OSMA 3VZWX 4LSEA 3UPGA 2ZFGA 1PRNA 4FMSA 3PRNA 5JDPA 2K4TA 3SZDA 2QTKA 4FOZA 5PRNA 1HXXA 3SZVA 2PORA 2FGQX 4JFBA 1GFMA 2XE3A 7PRNA 2ODJA 3T0SA 4FSPA 2Y2XA 3T20A 3SYSA 5FVNA 1HXTA 1BH3A 4RJWA 2OMFA 2J4UP 4FRXA 4D64A 4LSIA 4KR4A 1GFQA 4AUIA 4FT6A 4GCSA 1OPFA 3HW9A 1BT9A 3HWBA 1E54A 4GCQA 3VZTX 2O4VA 2XG6A 3SYBA 8PRNA 3EMNX 4D5UA 1MPFA 2ZLDA 4FSOA 1H6S1 6PRNA 3A2SX 5DL8A 3PORA 2XE2A 5DL7A 3VZUX 1GFPA 2Y0HA 4FRTA 2XE5A 4BUMX 1GFNA 2XE1A 4D65A 3VY9X 2PRNA
chains in the Genus database with same CATH superfamily
3SY7A 2MNHA 3PQUA 1THQA 2F1VA 1Q9FA 4IL6O 2KDYA 1GFOA 2JQYA 5GTIO 3UU2A 3PGUA 3T24A 4KR8A 4RJXA 3O0EA 4AYEC 1ZHZA 4GCPA 2FGRA 4K3CA 4O4UA 5D5DA 3VY8X 5IYUA 3POXA 3WI5A 2Y0KA 4N75A 4LSFA 2LHFA 4FQEA 4RLCA 5T5FA 4AYNA 3AA1B 1G90A 4O3YA 3G7GA 4LSHA 4UB8O 1QJPA 2Y0LA 4C69X 4KRAA 4C00A 2ERVA 1PHOA 2R4NA 5DL6A 4AYID 5G3AA 4AZLA 1S5LO 3FYXA 5G39A 2KZ7A 1HXUA 1ZHTA 2KXPB 3POQA 4K3BA 4O49A 3K19A 5DL5A 3AAAA 3SY9A 3AA7A 5H2FO 4N59A 3JTYA 2J1NA 4AFKA 3POUA 6PRNA 3DWNA 4F4BA 2N2LA 3NSGA 5G26A 2M06A 4AYMC 3BRYA 3AA1A 3PF1A 2F1TA 3JCUO 5TISO 3AAEB 3WI4A 1OSMA 3BRZA 3VZWX 2GE4A 4GHBA 3DA3A 4LSEA 5G38A 5GV0A 3UPGA 2ZFGA 1PRNA 4FMSA 4FZLA 4O3XB 3TZGA 4AKRA 2IWVA 2R89A 3PRNA 3AA6B 5JDPA 2K4TA 1ORMA 3SZDA 1P4TA 2QTKA 3A0BO 4FOZA 1HXXA 4FUVA 3LK3A 2PORA 5PRNA 3SZVA 1MM4A 4JCHA 4N58A 4RLBA 5AFUL 4G75A 2Y7SA 3LK2A 1ZHYA 2FGQX 1YS5A 4JFBA 3AA0A 5KAIO 1GFMA 2XE3A 3A0HO 3UAQA 3DWOX 7PRNA 2ODJA 3AA0B 4O3WA 3T0SA 3HOLA 2XTQA 2Y2XA 4FSPA 3VE1A 5ADXK 3SYSA 4GF4A 3T20A 3AAEA 2X27X 5AFUK 1QJ9A 3LK3B 4PR7A 1HXTA 2R8AA 5FVNA 3VE2A 1BH3A 4RJWA 2OMFA 2WJRA 4O3ZA 2J4UP 1BXWA 4FRXA 3GP6A 4D64A 2JMMA 5ADXL 2LFUA 2XTRA 2AXTO 1ZHWA 4LSIA 4UB6O 3V8UA 4FZNA 1ZHXA 4KR4A 4Z3TA 5KAFO 2YPVA 1GFQA 5E79O 4RL9A 3BS0A 3QRCA 4AUIA 4FT6A 2K0LA 4XNLA 3RBHA 4AYDC 4GCSA 1OPFA 3HW9A 3NJTA 1BT9A 3DA4A 3HWBA 4U9CA 1E54A 4GCQA 3VZTX 4E1TA 2O4VA 2M07A 2XG6A 3SYBA 8PRNA 2KXPA 3PGRA 3AAAB 2XMXA 3EMNX 4PUXA 3WU2O 4E1SA 4D5UA 4CTDA 5GTHO 1MPFA 2R4PA 3DZMA 1T1LA 2ZLDA 5B66O 3LK42 1Q9GA 4QQ1A 3AA6A 3C5OA 3LK41 1IZNA 2R4LA 1H6S1 4FSOA 3AA7B 3PQSA 2KC0A 2W80C 4N74A 2WVPA 4B61A 3A2SX 4AKRB 4G76A 5B5EO 1IZNB 1T16A 4XNKA 3LK2B 3HOEA 3PGSA 2KZ7B 5DL8A 2R4OA 4C4VB 3PORA 2XE2A 5DL7A 1QJ8A 3KZIO 4AKMA 3VZUX 2WJQA 1GFPA 2Y0HA 4FRTA 2XE5A 4FESA 4BUMX 2X9KA 2MHLA 4C4VA 2W81C 4O4XA 1MM5A 5EE2A 4PJ0O 1GFNA 3QRAA 2XE1A 3KVDD 4D65A 2YNKA 2IWWA 2N2MA 3VY9X 4FZMA 2R88A 2PRNA 2F1CX
chains in the Genus database with same CATH topology
3SY7A 2MNHA 3PQUA 1THQA 2F1VA 1Q9FA 2KDYA 1GFOA 3UU2A 3T24A 4KR8A 4RJXA 3O0EA 4AYEC 1ZHZA 4GCPA 2FGRA 4O4UA 5D5DA 3VY8X 5IYUA 3POXA 3WI5A 2Y0KA 4LSFA 2LHFA 4RLCA 5T5FA 4AYNA 1G90A 3AA1B 4O3YA 3G7GA 4LSHA 1QJPA 2Y0LA 4C69X 4KRAA 2ERVA 1PHOA 5DL6A 4AYID 4AZLA 3FYXA 2KZ7A 1HXUA 1ZHTA 2KXPB 3POQA 4O49A 5DL5A 3K19A 3SY9A 3AAAA 3AA7A 4N59A 3JTYA 2J1NA 4AFKA 3POUA 4F4BA 2N2LA 3NSGA 5G26A 2M06A 4AYMC 3AA1A 2F1TA 3AAEB 3WI4A 1OSMA 3VZWX 2GE4A 4GHBA 3DA3A 4LSEA 5GV0A 3UPGA 2ZFGA 1PRNA 4FMSA 4FZLA 4O3XB 3TZGA 4AKRA 3PRNA 3AA6B 5JDPA 2K4TA 1ORMA 3SZDA 1P4TA 2QTKA 4FOZA 1HXXA 4FUVA 3LK3A 2PORA 5PRNA 3SZVA 1MM4A 4JCHA 4N58A 4RLBA 5AFUL 4G75A 2Y7SA 3LK2A 1ZHYA 2FGQX 1YS5A 4JFBA 3AA0A 1GFMA 2XE3A 3UAQA 7PRNA 2ODJA 3AA0B 4O3WA 3T0SA 3HOLA 2XTQA 2Y2XA 4FSPA 3VE1A 5ADXK 3SYSA 4GF4A 3T20A 3AAEA 2X27X 5AFUK 1QJ9A 3LK3B 5FVNA 1HXTA 3VE2A 1BH3A 4RJWA 2OMFA 4O3ZA 2J4UP 1BXWA 4FRXA 3GP6A 4D64A 2JMMA 5ADXL 2LFUA 2XTRA 1ZHWA 4LSIA 3V8UA 4FZNA 1ZHXA 4KR4A 4Z3TA 2YPVA 1GFQA 4RL9A 3QRCA 4AUIA 4FT6A 2K0LA 4XNLA 3RBHA 4AYDC 4GCSA 1OPFA 3HW9A 1BT9A 3DA4A 3HWBA 4U9CA 1E54A 4GCQA 3VZTX 4E1TA 2O4VA 2M07A 2XG6A 3SYBA 8PRNA 2KXPA 3AAAB 2XMXA 3EMNX 4PUXA 4E1SA 4D5UA 1MPFA 2ZLDA 3LK42 1Q9GA 4QQ1A 3AA6A 3C5OA 3LK41 1IZNA 4FSOA 1H6S1 4B61A 3AA7B 3PQSA 2KC0A 2W80C 6PRNA 3A2SX 4AKRB 4G76A 1IZNB 4XNKA 3LK2B 3HOEA 2KZ7B 5DL8A 3PORA 2XE2A 5DL7A 1QJ8A 4AKMA 3VZUX 1GFPA 2Y0HA 4FRTA 2XE5A 4FESA 4BUMX 2MHLA 2W81C 4O4XA 1MM5A 5EE2A 1GFNA 3QRAA 2XE1A 3KVDD 4D65A 2YNKA 2N2MA 3VY9X 4FZMA 2PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SY7 A;  1GFO A;  3UU2 A;  3T24 A;  4KR8 A;  4RJX A;  3O0E A;  4GCP A;  2FGR A;  3VY8 X;  3POX A;  3WI5 A;  2Y0K A;  4LSF A;  4LSH A;  2Y0L A;  4C69 X;  4KRA A;  1PHO A;  5DL6 A;  3FYX A;  3POQ A;  1HXU A;  5DL5 A;  3SY9 A;  3K19 A;  3JTY A;  2J1N A;  3POU A;  3NSG A;  3WI4 A;  1OSM A;  3VZW X;  4LSE A;  3UPG A;  2ZFG A;  1PRN A;  4FMS A;  3PRN A;  5JDP A;  2K4T A;  3SZD A;  2QTK A;  4FOZ A;  5PRN A;  1HXX A;  3SZV A;  2POR A;  2FGQ X;  4JFB A;  1GFM A;  2XE3 A;  7PRN A;  2ODJ A;  3T0S A;  4FSP A;  2Y2X A;  3T20 A;  3SYS A;  5FVN A;  1HXT A;  1BH3 A;  4RJW A;  2OMF A;  2J4U P;  4FRX A;  4D64 A;  4LSI A;  4KR4 A;  1GFQ A;  4AUI A;  4FT6 A;  4GCS A;  1OPF A;  3HW9 A;  1BT9 A;  3HWB A;  1E54 A;  4GCQ A;  3VZT X;  2O4V A;  2XG6 A;  3SYB A;  8PRN A;  3EMN X;  4D5U A;  1MPF A;  2ZLD A;  4FSO A;  1H6S 1;  6PRN A;  3A2S X;  5DL8 A;  3POR A;  2XE2 A;  5DL7 A;  3VZU X;  1GFP A;  2Y0H A;  4FRT A;  2XE5 A;  4BUM X;  1GFN A;  2XE1 A;  4D65 A;  3VY9 X;  2PRN A; 
#chains in the Genus database with same CATH topology
 3SY7 A;  2MNH A;  3PQU A;  1THQ A;  2F1V A;  1Q9F A;  4IL6 O;  2KDY A;  1GFO A;  2JQY A;  5GTI O;  3UU2 A;  3PGU A;  3T24 A;  4KR8 A;  4RJX A;  3O0E A;  4AYE C;  1ZHZ A;  4GCP A;  2FGR A;  4K3C A;  4O4U A;  5D5D A;  3VY8 X;  5IYU A;  3POX A;  3WI5 A;  2Y0K A;  4N75 A;  4LSF A;  2LHF A;  4FQE A;  4RLC A;  5T5F A;  4AYN A;  3AA1 B;  1G90 A;  4O3Y A;  3G7G A;  4LSH A;  4UB8 O;  1QJP A;  2Y0L A;  4C69 X;  4KRA A;  4C00 A;  2ERV A;  1PHO A;  2R4N A;  5DL6 A;  4AYI D;  5G3A A;  4AZL A;  1S5L O;  3FYX A;  5G39 A;  2KZ7 A;  1HXU A;  1ZHT A;  2KXP B;  3POQ A;  4K3B A;  4O49 A;  3K19 A;  5DL5 A;  3AAA A;  3SY9 A;  3AA7 A;  5H2F O;  4N59 A;  3JTY A;  2J1N A;  4AFK A;  3POU A;  6PRN A;  3DWN A;  4F4B A;  2N2L A;  3NSG A;  5G26 A;  2M06 A;  4AYM C;  3BRY A;  3AA1 A;  3PF1 A;  2F1T A;  3JCU O;  5TIS O;  3AAE B;  3WI4 A;  1OSM A;  3BRZ A;  3VZW X;  2GE4 A;  4GHB A;  3DA3 A;  4LSE A;  5G38 A;  5GV0 A;  3UPG A;  2ZFG A;  1PRN A;  4FMS A;  4FZL A;  4O3X B;  3TZG A;  4AKR A;  2IWV A;  2R89 A;  3PRN A;  3AA6 B;  5JDP A;  2K4T A;  1ORM A;  3SZD A;  1P4T A;  2QTK A;  3A0B O;  4FOZ A;  1HXX A;  4FUV A;  3LK3 A;  2POR A;  5PRN A;  3SZV A;  1MM4 A;  4JCH A;  4N58 A;  4RLB A;  5AFU L;  4G75 A;  2Y7S A;  3LK2 A;  1ZHY A;  2FGQ X;  1YS5 A;  4JFB A;  3AA0 A;  5KAI O;  1GFM A;  2XE3 A;  3A0H O;  3UAQ A;  3DWO X;  7PRN A;  2ODJ A;  3AA0 B;  4O3W A;  3T0S A;  3HOL A;  2XTQ A;  2Y2X A;  4FSP A;  3VE1 A;  5ADX K;  3SYS A;  4GF4 A;  3T20 A;  3AAE A;  2X27 X;  5AFU K;  1QJ9 A;  3LK3 B;  4PR7 A;  1HXT A;  2R8A A;  5FVN A;  3VE2 A;  1BH3 A;  4RJW A;  2OMF A;  2WJR A;  4O3Z A;  2J4U P;  1BXW A;  4FRX A;  3GP6 A;  4D64 A;  2JMM A;  5ADX L;  2LFU A;  2XTR A;  2AXT O;  1ZHW A;  4LSI A;  4UB6 O;  3V8U A;  4FZN A;  1ZHX A;  4KR4 A;  4Z3T A;  5KAF O;  2YPV A;  1GFQ A;  5E79 O;  4RL9 A;  3BS0 A;  3QRC A;  4AUI A;  4FT6 A;  2K0L A;  4XNL A;  3RBH A;  4AYD C;  4GCS A;  1OPF A;  3HW9 A;  3NJT A;  1BT9 A;  3DA4 A;  3HWB A;  4U9C A;  1E54 A;  4GCQ A;  3VZT X;  4E1T A;  2O4V A;  2M07 A;  2XG6 A;  3SYB A;  8PRN A;  2KXP A;  3PGR A;  3AAA B;  2XMX A;  3EMN X;  4PUX A;  3WU2 O;  4E1S A;  4D5U A;  4CTD A;  5GTH O;  1MPF A;  2R4P A;  3DZM A;  1T1L A;  2ZLD A;  5B66 O;  3LK4 2;  1Q9G A;  4QQ1 A;  3AA6 A;  3C5O A;  3LK4 1;  1IZN A;  2R4L A;  1H6S 1;  4FSO A;  3AA7 B;  3PQS A;  2KC0 A;  2W80 C;  4N74 A;  2WVP A;  4B61 A;  3A2S X;  4AKR B;  4G76 A;  5B5E O;  1IZN B;  1T16 A;  4XNK A;  3LK2 B;  3HOE A;  3PGS A;  2KZ7 B;  5DL8 A;  2R4O A;  4C4V B;  3POR A;  2XE2 A;  5DL7 A;  1QJ8 A;  3KZI O;  4AKM A;  3VZU X;  2WJQ A;  1GFP A;  2Y0H A;  4FRT A;  2XE5 A;  4FES A;  4BUM X;  2X9K A;  2MHL A;  4C4V A;  2W81 C;  4O4X A;  1MM5 A;  5EE2 A;  4PJ0 O;  1GFN A;  3QRA A;  2XE1 A;  3KVD D;  4D65 A;  2YNK A;  2IWW A;  2N2M A;  3VY9 X;  4FZM A;  2R88 A;  2PRN A;  2F1C X; 
#chains in the Genus database with same CATH homology
 3SY7 A;  2MNH A;  3PQU A;  1THQ A;  2F1V A;  1Q9F A;  2KDY A;  1GFO A;  3UU2 A;  3T24 A;  4KR8 A;  4RJX A;  3O0E A;  4AYE C;  1ZHZ A;  4GCP A;  2FGR A;  4O4U A;  5D5D A;  3VY8 X;  5IYU A;  3POX A;  3WI5 A;  2Y0K A;  4LSF A;  2LHF A;  4RLC A;  5T5F A;  4AYN A;  1G90 A;  3AA1 B;  4O3Y A;  3G7G A;  4LSH A;  1QJP A;  2Y0L A;  4C69 X;  4KRA A;  2ERV A;  1PHO A;  5DL6 A;  4AYI D;  4AZL A;  3FYX A;  2KZ7 A;  1HXU A;  1ZHT A;  2KXP B;  3POQ A;  4O49 A;  5DL5 A;  3K19 A;  3SY9 A;  3AAA A;  3AA7 A;  4N59 A;  3JTY A;  2J1N A;  4AFK A;  3POU A;  4F4B A;  2N2L A;  3NSG A;  5G26 A;  2M06 A;  4AYM C;  3AA1 A;  2F1T A;  3AAE B;  3WI4 A;  1OSM A;  3VZW X;  2GE4 A;  4GHB A;  3DA3 A;  4LSE A;  5GV0 A;  3UPG A;  2ZFG A;  1PRN A;  4FMS A;  4FZL A;  4O3X B;  3TZG A;  4AKR A;  3PRN A;  3AA6 B;  5JDP A;  2K4T A;  1ORM A;  3SZD A;  1P4T A;  2QTK A;  4FOZ A;  1HXX A;  4FUV A;  3LK3 A;  2POR A;  5PRN A;  3SZV A;  1MM4 A;  4JCH A;  4N58 A;  4RLB A;  5AFU L;  4G75 A;  2Y7S A;  3LK2 A;  1ZHY A;  2FGQ X;  1YS5 A;  4JFB A;  3AA0 A;  1GFM A;  2XE3 A;  3UAQ A;  7PRN A;  2ODJ A;  3AA0 B;  4O3W A;  3T0S A;  3HOL A;  2XTQ A;  2Y2X A;  4FSP A;  3VE1 A;  5ADX K;  3SYS A;  4GF4 A;  3T20 A;  3AAE A;  2X27 X;  5AFU K;  1QJ9 A;  3LK3 B;  5FVN A;  1HXT A;  3VE2 A;  1BH3 A;  4RJW A;  2OMF A;  4O3Z A;  2J4U P;  1BXW A;  4FRX A;  3GP6 A;  4D64 A;  2JMM A;  5ADX L;  2LFU A;  2XTR A;  1ZHW A;  4LSI A;  3V8U A;  4FZN A;  1ZHX A;  4KR4 A;  4Z3T A;  2YPV A;  1GFQ A;  4RL9 A;  3QRC A;  4AUI A;  4FT6 A;  2K0L A;  4XNL A;  3RBH A;  4AYD C;  4GCS A;  1OPF A;  3HW9 A;  1BT9 A;  3DA4 A;  3HWB A;  4U9C A;  1E54 A;  4GCQ A;  3VZT X;  4E1T A;  2O4V A;  2M07 A;  2XG6 A;  3SYB A;  8PRN A;  2KXP A;  3AAA B;  2XMX A;  3EMN X;  4PUX A;  4E1S A;  4D5U A;  1MPF A;  2ZLD A;  3LK4 2;  1Q9G A;  4QQ1 A;  3AA6 A;  3C5O A;  3LK4 1;  1IZN A;  4FSO A;  1H6S 1;  4B61 A;  3AA7 B;  3PQS A;  2KC0 A;  2W80 C;  6PRN A;  3A2S X;  4AKR B;  4G76 A;  1IZN B;  4XNK A;  3LK2 B;  3HOE A;  2KZ7 B;  5DL8 A;  3POR A;  2XE2 A;  5DL7 A;  1QJ8 A;  4AKM A;  3VZU X;  1GFP A;  2Y0H A;  4FRT A;  2XE5 A;  4FES A;  4BUM X;  2MHL A;  2W81 C;  4O4X A;  1MM5 A;  5EE2 A;  1GFN A;  3QRA A;  2XE1 A;  3KVD D;  4D65 A;  2YNK A;  2N2M A;  3VY9 X;  4FZM A;  2PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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