4KR4A

Salmonella typhi ompf complex with ampicillin
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
341
structure length
339
Chain Sequence
MEIYNKDNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Salmonella typhi OmpF complex with Ampicillin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
molecule keywords Outer membrane protein F
total genus 55
structure length 339
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr4A00
8PRNA 1BT9A 4LSIA 5DL8A 2O4VA 3SZVA 4LSHA 3SZDA 1E54A 3SYBA 1PRNA 3HW9A 1GFOA 3PORA 3T0SA 3T24A 2Y0KA 4FT6A 2XE5A 4KR4A 5PRNA 4D64A 3SY7A 2FGQX 1HXUA 5DL7A 3POUA 4FSPA 2XG6A 5JDPA 2PORA 3JTYA 3SYSA 3POXA 1BH3A 2PRNA 3WI4A 1H6S1 1OPFA 4RJWA 3VZWX 7PRNA 4FRTA 3VY9X 4BUMX 1GFNA 4RJXA 2Y0HA 4GCPA 2J1NA 3UPGA 4KRAA 1GFQA 2OMFA 1OSMA 5FVNA 3FYXA 2XE3A 4FSOA 3EMNX 4JFBA 4D5UA 4LSEA 4FMSA 3POQA 1GFMA 2QTKA 6PRNA 1HXTA 4LSFA 1GFPA 3SY9A 3VZUX 2J4UP 3VZTX 2ZFGA 2FGRA 2XE2A 4FRXA 3UU2A 5DL5A 2K4TA 2XE1A 4AUIA 3WI5A 1PHOA 3PRNA 2ODJA 3NSGA 4GCSA 4KR8A 3VY8X 4GCQA 5DL6A 1HXXA 2ZLDA 3HWBA 4FOZA 3T20A 4C69X 3O0EA 2Y0LA 4D65A 1MPFA 3K19A 3A2SX 2Y2XA
chains in the Genus database with same CATH superfamily
8PRNA 1BT9A 4LSIA 2R4PA 4FUVA 5DL8A 2O4VA 4K3BA 4AYMC 2Y7SA 3SZVA 2X9KA 3DZMA 3DA4A 4LSHA 2WJQA 1E54A 4XNLA 3SZDA 1QJ9A 3G7GA 4O3ZA 4FESA 1PRNA 3SYBA 2X27X 3HW9A 1GFOA 3PORA 3HOLA 4O3YA 4RLBA 3T0SA 3T24A 3AAAB 2Y0KA 3LK42 4FT6A 4AKMA 4FZNA 4IL6O 2XE5A 3PGUA 4KR4A 5PRNA 4AKRB 4D64A 3SY7A 2FGQX 1HXUA 5B66O 4AFKA 3AA1B 3NJTA 4K3CA 5DL7A 3POUA 4FSPA 1T1LA 2M06A 2XG6A 5JDPA 2LHFA 3PF1A 3AA7B 2PORA 3JTYA 3SYSA 4QQ1A 4N59A 3VE2A 3A0BO 4AYID 5TISO 1IZNA 4AYNA 3TZGA 3POXA 3PGSA 1BH3A 3AA1A 3DWOX 4AZLA 4AYEC 5H2FO 3GP6A 2PRNA 2KZ7B 1MM5A 3WI4A 2M07A 3AAAA 1H6S1 2R89A 5G26A 1OPFA 2XMXA 4G76A 4O3WA 4RJWA 5KAIO 3VZWX 7PRNA 4FRTA 3KZIO 4O3XB 5GTIO 1T16A 3VY9X 4BUMX 4PR7A 3DA3A 3A0HO 5GV0A 3WU2O 3KVDD 2N2LA 1GFNA 4RJXA 2Y0HA 4GHBA 4GCPA 2J1NA 2KC0A 3JCUO 4KRAA 3RBHA 3VE1A 1ZHTA 3UPGA 1GFQA 2OMFA 1OSMA 4O49A 3FYXA 5FVNA 2F1VA 4Z3TA 2YPVA 2IWVA 3QRCA 2R4LA 2XE3A 2W80C 4FSOA 2GE4A 4U9CA 3C5OA 3EMNX 4JFBA 4D5UA 4LSEA 3HOEA 4FMSA 3POQA 2KXPA 1GFMA 4AKRA 2KXPB 1P4TA 2W81C 3V8UA 5B5EO 2LFUA 5EE2A 2QTKA 1ZHYA 6PRNA 1HXTA 1MM4A 2R88A 4JCHA 2JMMA 1ZHZA 4G75A 3PQSA 3PQUA 4RLCA 5G38A 2IWWA 4O4XA 4C4VA 4CTDA 4LSFA 4PUXA 5E79O 1GFPA 4F4BA 2WVPA 3SY9A 1ORMA 2N2MA 5KAFO 2KDYA 3VZUX 3VZTX 2ZFGA 4C00A 4E1SA 2FGRA 2J4UP 2XE2A 4FRXA 1G90A 2K0LA 3UU2A 4FQEA 5DL5A 4C4VB 4B61A 4O4UA 5GTHO 2K4TA 2XE1A 3AA0B 3LK3A 3AA0A 3AA6B 2R4NA 3BRZA 1Q9GA 3LK2B 1QJPA 2KZ7A 3LK3B 3WI5A 4AUIA 1PHOA 3PGRA 4N58A 2XTRA 1QJ8A 3PRNA 2ODJA 1IZNB 3NSGA 4GCSA 3AAEB 5AFUL 5IYUA 5AFUK 2F1CX 2F1TA 4KR8A 4FZLA 3LK2A 1THQA 4N74A 1BXWA 1ZHXA 1ZHWA 3AA6A 3BRYA 4UB8O 5G3AA 3UAQA 4GCQA 3VY8X 2WJRA 1YS5A 3DWNA 5DL6A 1HXXA 4E1TA 2R4OA 4XNKA 3AAEA 5G39A 2ZLDA 3HWBA 3LK41 4GF4A 5ADXL 4PJ0O 2ERVA 4FOZA 3T20A 2R8AA 1Q9FA 2JQYA 2Y2XA 4C69X 3AA7A 3QRAA 4AYDC 5T5FA 4N75A 4UB6O 5D5DA 2YNKA 2Y0LA 3O0EA 2MNHA 5ADXK 4D65A 1MPFA 3K19A 3A2SX 2XTQA 4FZMA 4RL9A 1S5LO 2MHLA 3BS0A 2AXTO
chains in the Genus database with same CATH topology
8PRNA 1BT9A 4LSIA 4FUVA 5DL8A 2O4VA 4AYMC 2Y7SA 3SZVA 3DA4A 4LSHA 3SZDA 1E54A 4XNLA 1QJ9A 3G7GA 4O3ZA 4FESA 1PRNA 3SYBA 2X27X 3HW9A 1GFOA 3PORA 3HOLA 4O3YA 4RLBA 3T0SA 3T24A 3AAAB 2Y0KA 3LK42 4FT6A 4AKMA 4FZNA 2XE5A 4KR4A 5PRNA 4AKRB 4D64A 3SY7A 2FGQX 1HXUA 4AFKA 3AA1B 5DL7A 3POUA 4FSPA 2M06A 2XG6A 5JDPA 2LHFA 3AA7B 2PORA 3JTYA 3SYSA 4QQ1A 4N59A 3VE2A 4AYID 4AYNA 1IZNA 3TZGA 3POXA 1BH3A 3AA1A 4AZLA 4AYEC 3GP6A 2PRNA 2KZ7B 1MM5A 3WI4A 2M07A 3AAAA 1H6S1 5G26A 1OPFA 2XMXA 4G76A 4O3WA 4RJWA 3VZWX 7PRNA 4FRTA 4O3XB 3VY9X 4BUMX 5GV0A 3DA3A 3KVDD 2N2LA 1GFNA 4RJXA 2Y0HA 4GHBA 4GCPA 2J1NA 2KC0A 3RBHA 4KRAA 3UPGA 3VE1A 1ZHTA 1GFQA 2OMFA 1OSMA 5FVNA 3FYXA 2F1VA 4Z3TA 2YPVA 3QRCA 2XE3A 2W80C 4FSOA 2GE4A 4U9CA 3C5OA 3EMNX 4JFBA 4D5UA 4LSEA 3HOEA 4FMSA 3POQA 2KXPA 1GFMA 4AKRA 2KXPB 1P4TA 2W81C 3V8UA 2LFUA 5EE2A 2QTKA 1ZHYA 6PRNA 1HXTA 1MM4A 4JCHA 2JMMA 1ZHZA 4G75A 3PQSA 3PQUA 4RLCA 4O4XA 4LSFA 4PUXA 1GFPA 4F4BA 3SY9A 1ORMA 2N2MA 2KDYA 3VZUX 3VZTX 2ZFGA 4E1SA 2J4UP 2FGRA 1G90A 2XE2A 4FRXA 2K0LA 3UU2A 5DL5A 4B61A 4O4UA 2K4TA 2XE1A 3AA0B 3LK3A 3AA0A 3AA6B 3LK3B 4AUIA 1Q9GA 3LK2B 1QJPA 2KZ7A 3WI5A 1PHOA 4N58A 2XTRA 1QJ8A 3PRNA 2ODJA 1IZNB 3NSGA 4GCSA 3AAEB 5AFUL 5IYUA 5AFUK 2F1TA 4KR8A 3LK2A 1THQA 1BXWA 1ZHXA 1ZHWA 3AA6A 3UAQA 3VY8X 4GCQA 1YS5A 5DL6A 1HXXA 4E1TA 4XNKA 3AAEA 2ZLDA 3HWBA 3LK41 4GF4A 5ADXL 2ERVA 4FOZA 3T20A 1Q9FA 4C69X 3AA7A 3QRAA 4AYDC 5T5FA 5D5DA 2YNKA 2Y0LA 3O0EA 2MNHA 5ADXK 4D65A 1MPFA 3K19A 3A2SX 2XTQA 4FZMA 4RL9A 4FZLA 2MHLA 4O49A 2Y2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 8PRN A;  1BT9 A;  4LSI A;  5DL8 A;  2O4V A;  3SZV A;  4LSH A;  3SZD A;  1E54 A;  3SYB A;  1PRN A;  3HW9 A;  1GFO A;  3POR A;  3T0S A;  3T24 A;  2Y0K A;  4FT6 A;  2XE5 A;  4KR4 A;  5PRN A;  4D64 A;  3SY7 A;  2FGQ X;  1HXU A;  5DL7 A;  3POU A;  4FSP A;  2XG6 A;  5JDP A;  2POR A;  3JTY A;  3SYS A;  3POX A;  1BH3 A;  2PRN A;  3WI4 A;  1H6S 1;  1OPF A;  4RJW A;  3VZW X;  7PRN A;  4FRT A;  3VY9 X;  4BUM X;  1GFN A;  4RJX A;  2Y0H A;  4GCP A;  2J1N A;  3UPG A;  4KRA A;  1GFQ A;  2OMF A;  1OSM A;  5FVN A;  3FYX A;  2XE3 A;  4FSO A;  3EMN X;  4JFB A;  4D5U A;  4LSE A;  4FMS A;  3POQ A;  1GFM A;  2QTK A;  6PRN A;  1HXT A;  4LSF A;  1GFP A;  3SY9 A;  3VZU X;  2J4U P;  3VZT X;  2ZFG A;  2FGR A;  2XE2 A;  4FRX A;  3UU2 A;  5DL5 A;  2K4T A;  2XE1 A;  4AUI A;  3WI5 A;  1PHO A;  3PRN A;  2ODJ A;  3NSG A;  4GCS A;  4KR8 A;  3VY8 X;  4GCQ A;  5DL6 A;  1HXX A;  2ZLD A;  3HWB A;  4FOZ A;  3T20 A;  4C69 X;  3O0E A;  2Y0L A;  4D65 A;  1MPF A;  3K19 A;  3A2S X;  2Y2X A; 
#chains in the Genus database with same CATH topology
 8PRN A;  1BT9 A;  4LSI A;  2R4P A;  4FUV A;  5DL8 A;  2O4V A;  4K3B A;  4AYM C;  2Y7S A;  3SZV A;  2X9K A;  3DZM A;  3DA4 A;  4LSH A;  2WJQ A;  1E54 A;  4XNL A;  3SZD A;  1QJ9 A;  3G7G A;  4O3Z A;  4FES A;  1PRN A;  3SYB A;  2X27 X;  3HW9 A;  1GFO A;  3POR A;  3HOL A;  4O3Y A;  4RLB A;  3T0S A;  3T24 A;  3AAA B;  2Y0K A;  3LK4 2;  4FT6 A;  4AKM A;  4FZN A;  4IL6 O;  2XE5 A;  3PGU A;  4KR4 A;  5PRN A;  4AKR B;  4D64 A;  3SY7 A;  2FGQ X;  1HXU A;  5B66 O;  4AFK A;  3AA1 B;  3NJT A;  4K3C A;  5DL7 A;  3POU A;  4FSP A;  1T1L A;  2M06 A;  2XG6 A;  5JDP A;  2LHF A;  3PF1 A;  3AA7 B;  2POR A;  3JTY A;  3SYS A;  4QQ1 A;  4N59 A;  3VE2 A;  3A0B O;  4AYI D;  5TIS O;  1IZN A;  4AYN A;  3TZG A;  3POX A;  3PGS A;  1BH3 A;  3AA1 A;  3DWO X;  4AZL A;  4AYE C;  5H2F O;  3GP6 A;  2PRN A;  2KZ7 B;  1MM5 A;  3WI4 A;  2M07 A;  3AAA A;  1H6S 1;  2R89 A;  5G26 A;  1OPF A;  2XMX A;  4G76 A;  4O3W A;  4RJW A;  5KAI O;  3VZW X;  7PRN A;  4FRT A;  3KZI O;  4O3X B;  5GTI O;  1T16 A;  3VY9 X;  4BUM X;  4PR7 A;  3DA3 A;  3A0H O;  5GV0 A;  3WU2 O;  3KVD D;  2N2L A;  1GFN A;  4RJX A;  2Y0H A;  4GHB A;  4GCP A;  2J1N A;  2KC0 A;  3JCU O;  4KRA A;  3RBH A;  3VE1 A;  1ZHT A;  3UPG A;  1GFQ A;  2OMF A;  1OSM A;  4O49 A;  3FYX A;  5FVN A;  2F1V A;  4Z3T A;  2YPV A;  2IWV A;  3QRC A;  2R4L A;  2XE3 A;  2W80 C;  4FSO A;  2GE4 A;  4U9C A;  3C5O A;  3EMN X;  4JFB A;  4D5U A;  4LSE A;  3HOE A;  4FMS A;  3POQ A;  2KXP A;  1GFM A;  4AKR A;  2KXP B;  1P4T A;  2W81 C;  3V8U A;  5B5E O;  2LFU A;  5EE2 A;  2QTK A;  1ZHY A;  6PRN A;  1HXT A;  1MM4 A;  2R88 A;  4JCH A;  2JMM A;  1ZHZ A;  4G75 A;  3PQS A;  3PQU A;  4RLC A;  5G38 A;  2IWW A;  4O4X A;  4C4V A;  4CTD A;  4LSF A;  4PUX A;  5E79 O;  1GFP A;  4F4B A;  2WVP A;  3SY9 A;  1ORM A;  2N2M A;  5KAF O;  2KDY A;  3VZU X;  3VZT X;  2ZFG A;  4C00 A;  4E1S A;  2FGR A;  2J4U P;  2XE2 A;  4FRX A;  1G90 A;  2K0L A;  3UU2 A;  4FQE A;  5DL5 A;  4C4V B;  4B61 A;  4O4U A;  5GTH O;  2K4T A;  2XE1 A;  3AA0 B;  3LK3 A;  3AA0 A;  3AA6 B;  2R4N A;  3BRZ A;  1Q9G A;  3LK2 B;  1QJP A;  2KZ7 A;  3LK3 B;  3WI5 A;  4AUI A;  1PHO A;  3PGR A;  4N58 A;  2XTR A;  1QJ8 A;  3PRN A;  2ODJ A;  1IZN B;  3NSG A;  4GCS A;  3AAE B;  5AFU L;  5IYU A;  5AFU K;  2F1C X;  2F1T A;  4KR8 A;  4FZL A;  3LK2 A;  1THQ A;  4N74 A;  1BXW A;  1ZHX A;  1ZHW A;  3AA6 A;  3BRY A;  4UB8 O;  5G3A A;  3UAQ A;  4GCQ A;  3VY8 X;  2WJR A;  1YS5 A;  3DWN A;  5DL6 A;  1HXX A;  4E1T A;  2R4O A;  4XNK A;  3AAE A;  5G39 A;  2ZLD A;  3HWB A;  3LK4 1;  4GF4 A;  5ADX L;  4PJ0 O;  2ERV A;  4FOZ A;  3T20 A;  2R8A A;  1Q9F A;  2JQY A;  2Y2X A;  4C69 X;  3AA7 A;  3QRA A;  4AYD C;  5T5F A;  4N75 A;  4UB6 O;  5D5D A;  2YNK A;  2Y0L A;  3O0E A;  2MNH A;  5ADX K;  4D65 A;  1MPF A;  3K19 A;  3A2S X;  2XTQ A;  4FZM A;  4RL9 A;  1S5L O;  2MHL A;  3BS0 A;  2AXT O; 
#chains in the Genus database with same CATH homology
 8PRN A;  1BT9 A;  4LSI A;  4FUV A;  5DL8 A;  2O4V A;  4AYM C;  2Y7S A;  3SZV A;  3DA4 A;  4LSH A;  3SZD A;  1E54 A;  4XNL A;  1QJ9 A;  3G7G A;  4O3Z A;  4FES A;  1PRN A;  3SYB A;  2X27 X;  3HW9 A;  1GFO A;  3POR A;  3HOL A;  4O3Y A;  4RLB A;  3T0S A;  3T24 A;  3AAA B;  2Y0K A;  3LK4 2;  4FT6 A;  4AKM A;  4FZN A;  2XE5 A;  4KR4 A;  5PRN A;  4AKR B;  4D64 A;  3SY7 A;  2FGQ X;  1HXU A;  4AFK A;  3AA1 B;  5DL7 A;  3POU A;  4FSP A;  2M06 A;  2XG6 A;  5JDP A;  2LHF A;  3AA7 B;  2POR A;  3JTY A;  3SYS A;  4QQ1 A;  4N59 A;  3VE2 A;  4AYI D;  4AYN A;  1IZN A;  3TZG A;  3POX A;  1BH3 A;  3AA1 A;  4AZL A;  4AYE C;  3GP6 A;  2PRN A;  2KZ7 B;  1MM5 A;  3WI4 A;  2M07 A;  3AAA A;  1H6S 1;  5G26 A;  1OPF A;  2XMX A;  4G76 A;  4O3W A;  4RJW A;  3VZW X;  7PRN A;  4FRT A;  4O3X B;  3VY9 X;  4BUM X;  5GV0 A;  3DA3 A;  3KVD D;  2N2L A;  1GFN A;  4RJX A;  2Y0H A;  4GHB A;  4GCP A;  2J1N A;  2KC0 A;  3RBH A;  4KRA A;  3UPG A;  3VE1 A;  1ZHT A;  1GFQ A;  2OMF A;  1OSM A;  5FVN A;  3FYX A;  2F1V A;  4Z3T A;  2YPV A;  3QRC A;  2XE3 A;  2W80 C;  4FSO A;  2GE4 A;  4U9C A;  3C5O A;  3EMN X;  4JFB A;  4D5U A;  4LSE A;  3HOE A;  4FMS A;  3POQ A;  2KXP A;  1GFM A;  4AKR A;  2KXP B;  1P4T A;  2W81 C;  3V8U A;  2LFU A;  5EE2 A;  2QTK A;  1ZHY A;  6PRN A;  1HXT A;  1MM4 A;  4JCH A;  2JMM A;  1ZHZ A;  4G75 A;  3PQS A;  3PQU A;  4RLC A;  4O4X A;  4LSF A;  4PUX A;  1GFP A;  4F4B A;  3SY9 A;  1ORM A;  2N2M A;  2KDY A;  3VZU X;  3VZT X;  2ZFG A;  4E1S A;  2J4U P;  2FGR A;  1G90 A;  2XE2 A;  4FRX A;  2K0L A;  3UU2 A;  5DL5 A;  4B61 A;  4O4U A;  2K4T A;  2XE1 A;  3AA0 B;  3LK3 A;  3AA0 A;  3AA6 B;  3LK3 B;  4AUI A;  1Q9G A;  3LK2 B;  1QJP A;  2KZ7 A;  3WI5 A;  1PHO A;  4N58 A;  2XTR A;  1QJ8 A;  3PRN A;  2ODJ A;  1IZN B;  3NSG A;  4GCS A;  3AAE B;  5AFU L;  5IYU A;  5AFU K;  2F1T A;  4KR8 A;  3LK2 A;  1THQ A;  1BXW A;  1ZHX A;  1ZHW A;  3AA6 A;  3UAQ A;  3VY8 X;  4GCQ A;  1YS5 A;  5DL6 A;  1HXX A;  4E1T A;  4XNK A;  3AAE A;  2ZLD A;  3HWB A;  3LK4 1;  4GF4 A;  5ADX L;  2ERV A;  4FOZ A;  3T20 A;  1Q9F A;  4C69 X;  3AA7 A;  3QRA A;  4AYD C;  5T5F A;  5D5D A;  2YNK A;  2Y0L A;  3O0E A;  2MNH A;  5ADX K;  4D65 A;  1MPF A;  3K19 A;  3A2S X;  2XTQ A;  4FZM A;  4RL9 A;  4FZL A;  2MHL A;  4O49 A;  2Y2X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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