4LSIA

Ion selectivity of ompf porin soaked in 0.3m kbr
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
334
structure length
334
Chain Sequence
DGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Escherichia coli
publication title A structural study of ion permeation in OmpF porin from anomalous X-ray diffraction and molecular dynamics simulations.
pubmed doi rcsb
molecule keywords Outer membrane protein F
total genus 100
structure length 334
sequence length 334
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4lsiA00
2Y0KA 2J4UP 1GFMA 3POXA 3PORA 1HXTA 3T20A 3UPGA 2PRNA 2J1NA 3T0SA 1GFPA 3PRNA 2Y2XA 1BH3A 4JFBA 5DL7A 1GFOA 1E54A 4D5UA 4LSFA 2XG6A 3VY9X 2OMFA 4FMSA 3SZDA 1PRNA 3UU2A 2FGRA 4D65A 4FRXA 5DL5A 1OSMA 2Y0LA 1HXUA 4KRAA 3SZVA 4FRTA 3WI4A 2FGQX 4FSPA 3VZTX 3SY7A 6PRNA 2XE5A 3WI5A 3SY9A 8PRNA 2ZLDA 2K4TA 4GCSA 5PRNA 3NSGA 2Y0HA 4LSIA 3K19A 5FVNA 4KR8A 4FOZA 3O0EA 2O4VA 3HWBA 1H6S1 4RJXA 3VZUX 5JDPA 4GCQA 3POUA 3SYBA 4FT6A 3EMNX 4RJWA 3A2SX 3JTYA 3T24A 1PHOA 3SYSA 2XE3A 4FSOA 1HXXA 2XE1A 2PORA 4C69X 4KR4A 2ZFGA 4GCPA 3HW9A 1GFQA 1GFNA 2ODJA 1OPFA 3VY8X 4D64A 4LSEA 1MPFA 7PRNA 4AUIA 4BUMX 3VZWX 3FYXA 2XE2A 3POQA 5DL8A 2QTKA 1BT9A 4LSHA 5DL6A
chains in the Genus database with same CATH superfamily
2Y0KA 5DL6A 2J4UP 1GFMA 5E79O 3PGSA 1QJ8A 1G90A 4AYMC 4XNKA 3POXA 1Q9GA 3PORA 1HXTA 2IWVA 2KC0A 3T20A 4AZLA 3PGUA 3UPGA 2PRNA 2J1NA 3PF1A 3T0SA 3WU2O 1GFPA 1THQA 3PRNA 5B66O 2Y2XA 1S5LO 1ORMA 2M06A 2F1TA 3LK42 5G26A 5G3AA 1BH3A 2JMMA 3LK3A 3LK2A 3AA1A 3AA0B 3AA6A 3AAAA 4JFBA 2F1VA 4UB6O 5DL7A 1GFOA 4LSHA 2JQYA 1E54A 4AFKA 4D5UA 3HOEA 4FQEA 4C4VB 4AKRB 4U9CA 4LSFA 5GTIO 3DA3A 2XG6A 4GHBA 3VY9X 1ZHTA 2OMFA 4AYNA 1MM4A 4FMSA 1IZNA 2WVPA 2WJRA 3SZDA 1PRNA 3BS0A 3PQSA 3UU2A 5B5EO 2FGRA 5KAIO 4D65A 4O3ZA 2X27X 4FRXA 5DL5A 4IL6O 4JCHA 3GP6A 1OSMA 2Y0LA 1HXUA 5H2FO 3A0BO 3PGRA 3KZIO 4KRAA 1T1LA 3SZVA 4K3CA 5ADXL 4FRTA 3RBHA 4K3BA 4UB8O 5AFUK 4CTDA 3LK2B 3WI4A 4E1TA 2FGQX 3AA1B 2GE4A 3AA7B 3QRCA 4FSPA 3VZTX 2K0LA 1ZHZA 2F1CX 3DWOX 3SY7A 3AAEA 6PRNA 2XE5A 3WI5A 3SY9A 4FZMA 2LHFA 4PR7A 2R4OA 2R4LA 4B61A 8PRNA 5GTHO 2ZLDA 4RLCA 2K4TA 4GCSA 5PRNA 3NSGA 2KXPB 2M07A 3QRAA 4O3WA 4PUXA 2Y0HA 4GF4A 4RLBA 4QQ1A 4O3XB 4C00A 3JCUO 4FZNA 4LSIA 4G76A 3A0HO 3K19A 5FVNA 4KR8A 3C5OA 4O4XA 2WJQA 4FOZA 3O0EA 1QJ9A 5D5DA 3LK41 2O4VA 4AYEC 3HWBA 2W81C 1H6S1 4AYDC 2KZ7A 2YPVA 1YS5A 2X9KA 4RJXA 4G75A 5TISO 2KDYA 2R4NA 3VZUX 5JDPA 2IWWA 5KAFO 3LK3B 4GCQA 3POUA 4N58A 4O3YA 4O4UA 3SYBA 5IYUA 3AA6B 3AAAB 3EMNX 4FT6A 4F4BA 4C4VA 4AKRA 4AYID 1BXWA 4RJWA 5EE2A 1QJPA 4N59A 2XTQA 3A2SX 3JTYA 3T24A 1PHOA 3SYSA 3UAQA 4AKMA 2ERVA 4RL9A 2XE3A 4FSOA 4FUVA 4E1SA 1MM5A 1HXXA 2XE1A 2PORA 2YNKA 4C69X 4FZLA 3HOLA 4KR4A 2ZFGA 5T5FA 2MHLA 2Y7SA 4GCPA 2R88A 3VE1A 3HW9A 1GFQA 1GFNA 1ZHYA 1IZNB 4XNLA 2ODJA 3AAEB 1OPFA 3PQUA 3VY8X 4O49A 3BRYA 4LSEA 4D64A 1MPFA 4N75A 7PRNA 1ZHWA 5ADXK 2AXTO 2R89A 4FESA 4AUIA 4PJ0O 4BUMX 1Q9FA 2W80C 1P4TA 3AA0A 2XTRA 3AA7A 3FYXA 1T16A 3KVDD 2KZ7B 5G39A 3VZWX 3BRZA 3TZGA 3VE2A 5GV0A 3DA4A 4N74A 1ZHXA 2XE2A 3V8UA 2N2MA 3POQA 5G38A 5AFUL 2R4PA 2XMXA 3NJTA 5DL8A 3G7GA 3DWNA 2QTKA 2R8AA 2MNHA 4Z3TA 1BT9A 3DZMA 2N2LA 2LFUA 2KXPA
chains in the Genus database with same CATH topology
2Y0KA 5DL6A 2J4UP 1GFMA 1QJ8A 1G90A 4AYMC 4XNKA 3POXA 1Q9GA 3PORA 1HXTA 3T20A 2KC0A 4AZLA 3UPGA 2PRNA 2J1NA 3T0SA 1GFPA 1THQA 3PRNA 2Y2XA 1ORMA 2M06A 2F1TA 3LK42 5G26A 1BH3A 2JMMA 3LK3A 3LK2A 3AA1A 3AA0B 3AA6A 3AAAA 4JFBA 2F1VA 5DL7A 1GFOA 4LSHA 1E54A 4AFKA 4D5UA 3HOEA 4AKRB 4U9CA 4LSFA 3DA3A 2XG6A 4GHBA 3VY9X 1ZHTA 2OMFA 4AYNA 1MM4A 4FMSA 1IZNA 3SZDA 1PRNA 3PQSA 3UU2A 2FGRA 4D65A 4O3ZA 2X27X 4FRXA 5DL5A 4JCHA 3GP6A 1OSMA 2Y0LA 1HXUA 4KRAA 3SZVA 5ADXL 4FRTA 3RBHA 5AFUK 3LK2B 3WI4A 4E1TA 2FGQX 3AA1B 2GE4A 3AA7B 3QRCA 4FSPA 3VZTX 2K0LA 1ZHZA 3SY7A 3AAEA 6PRNA 2XE5A 3WI5A 3SY9A 4FZMA 2LHFA 4B61A 8PRNA 2ZLDA 4RLCA 2K4TA 4GCSA 5PRNA 3NSGA 2KXPB 2M07A 3QRAA 4O3WA 4PUXA 2Y0HA 4GF4A 4RLBA 4QQ1A 4O3XB 4FZNA 4LSIA 4G76A 3K19A 5FVNA 4KR8A 3C5OA 4O4XA 4FOZA 3O0EA 1QJ9A 5D5DA 3LK41 2O4VA 4AYEC 3HWBA 2W81C 1H6S1 4AYDC 2KZ7A 2YPVA 1YS5A 4RJXA 4G75A 2KDYA 3VZUX 5JDPA 3LK3B 4GCQA 3POUA 4N58A 4O3YA 4O4UA 3SYBA 5IYUA 3AA6B 3AAAB 3EMNX 4FT6A 4F4BA 4AKRA 4AYID 1BXWA 4RJWA 5EE2A 1QJPA 4N59A 2XTQA 3A2SX 3JTYA 3T24A 1PHOA 3SYSA 3UAQA 4AKMA 2ERVA 4RL9A 2XE3A 4FSOA 4FUVA 4E1SA 1MM5A 1HXXA 2XE1A 2PORA 2YNKA 4C69X 4FZLA 3HOLA 4KR4A 2ZFGA 5T5FA 2MHLA 2Y7SA 4GCPA 3VE1A 3HW9A 1GFQA 1GFNA 1ZHYA 1IZNB 4XNLA 2ODJA 3AAEB 1OPFA 3PQUA 3VY8X 4O49A 4D64A 4LSEA 1MPFA 7PRNA 5ADXK 1ZHWA 4AUIA 4BUMX 4FESA 1Q9FA 2W80C 1P4TA 3AA0A 2XTRA 3AA7A 3FYXA 3VZWX 2KZ7B 3TZGA 3VE2A 5GV0A 3DA4A 1ZHXA 2XE2A 3V8UA 2N2MA 3POQA 5AFUL 2XMXA 5DL8A 3G7GA 2QTKA 2MNHA 4Z3TA 1BT9A 3KVDD 2N2LA 2LFUA 2KXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0K A;  2J4U P;  1GFM A;  3POX A;  3POR A;  1HXT A;  3T20 A;  3UPG A;  2PRN A;  2J1N A;  3T0S A;  1GFP A;  3PRN A;  2Y2X A;  1BH3 A;  4JFB A;  5DL7 A;  1GFO A;  1E54 A;  4D5U A;  4LSF A;  2XG6 A;  3VY9 X;  2OMF A;  4FMS A;  3SZD A;  1PRN A;  3UU2 A;  2FGR A;  4D65 A;  4FRX A;  5DL5 A;  1OSM A;  2Y0L A;  1HXU A;  4KRA A;  3SZV A;  4FRT A;  3WI4 A;  2FGQ X;  4FSP A;  3VZT X;  3SY7 A;  6PRN A;  2XE5 A;  3WI5 A;  3SY9 A;  8PRN A;  2ZLD A;  2K4T A;  4GCS A;  5PRN A;  3NSG A;  2Y0H A;  4LSI A;  3K19 A;  5FVN A;  4KR8 A;  4FOZ A;  3O0E A;  2O4V A;  3HWB A;  1H6S 1;  4RJX A;  3VZU X;  5JDP A;  4GCQ A;  3POU A;  3SYB A;  4FT6 A;  3EMN X;  4RJW A;  3A2S X;  3JTY A;  3T24 A;  1PHO A;  3SYS A;  2XE3 A;  4FSO A;  1HXX A;  2XE1 A;  2POR A;  4C69 X;  4KR4 A;  2ZFG A;  4GCP A;  3HW9 A;  1GFQ A;  1GFN A;  2ODJ A;  1OPF A;  3VY8 X;  4D64 A;  4LSE A;  1MPF A;  7PRN A;  4AUI A;  4BUM X;  3VZW X;  3FYX A;  2XE2 A;  3POQ A;  5DL8 A;  2QTK A;  1BT9 A;  4LSH A;  5DL6 A; 
#chains in the Genus database with same CATH topology
 2Y0K A;  5DL6 A;  2J4U P;  1GFM A;  5E79 O;  3PGS A;  1QJ8 A;  1G90 A;  4AYM C;  4XNK A;  3POX A;  1Q9G A;  3POR A;  1HXT A;  2IWV A;  2KC0 A;  3T20 A;  4AZL A;  3PGU A;  3UPG A;  2PRN A;  2J1N A;  3PF1 A;  3T0S A;  3WU2 O;  1GFP A;  1THQ A;  3PRN A;  5B66 O;  2Y2X A;  1S5L O;  1ORM A;  2M06 A;  2F1T A;  3LK4 2;  5G26 A;  5G3A A;  1BH3 A;  2JMM A;  3LK3 A;  3LK2 A;  3AA1 A;  3AA0 B;  3AA6 A;  3AAA A;  4JFB A;  2F1V A;  4UB6 O;  5DL7 A;  1GFO A;  4LSH A;  2JQY A;  1E54 A;  4AFK A;  4D5U A;  3HOE A;  4FQE A;  4C4V B;  4AKR B;  4U9C A;  4LSF A;  5GTI O;  3DA3 A;  2XG6 A;  4GHB A;  3VY9 X;  1ZHT A;  2OMF A;  4AYN A;  1MM4 A;  4FMS A;  1IZN A;  2WVP A;  2WJR A;  3SZD A;  1PRN A;  3BS0 A;  3PQS A;  3UU2 A;  5B5E O;  2FGR A;  5KAI O;  4D65 A;  4O3Z A;  2X27 X;  4FRX A;  5DL5 A;  4IL6 O;  4JCH A;  3GP6 A;  1OSM A;  2Y0L A;  1HXU A;  5H2F O;  3A0B O;  3PGR A;  3KZI O;  4KRA A;  1T1L A;  3SZV A;  4K3C A;  5ADX L;  4FRT A;  3RBH A;  4K3B A;  4UB8 O;  5AFU K;  4CTD A;  3LK2 B;  3WI4 A;  4E1T A;  2FGQ X;  3AA1 B;  2GE4 A;  3AA7 B;  3QRC A;  4FSP A;  3VZT X;  2K0L A;  1ZHZ A;  2F1C X;  3DWO X;  3SY7 A;  3AAE A;  6PRN A;  2XE5 A;  3WI5 A;  3SY9 A;  4FZM A;  2LHF A;  4PR7 A;  2R4O A;  2R4L A;  4B61 A;  8PRN A;  5GTH O;  2ZLD A;  4RLC A;  2K4T A;  4GCS A;  5PRN A;  3NSG A;  2KXP B;  2M07 A;  3QRA A;  4O3W A;  4PUX A;  2Y0H A;  4GF4 A;  4RLB A;  4QQ1 A;  4O3X B;  4C00 A;  3JCU O;  4FZN A;  4LSI A;  4G76 A;  3A0H O;  3K19 A;  5FVN A;  4KR8 A;  3C5O A;  4O4X A;  2WJQ A;  4FOZ A;  3O0E A;  1QJ9 A;  5D5D A;  3LK4 1;  2O4V A;  4AYE C;  3HWB A;  2W81 C;  1H6S 1;  4AYD C;  2KZ7 A;  2YPV A;  1YS5 A;  2X9K A;  4RJX A;  4G75 A;  5TIS O;  2KDY A;  2R4N A;  3VZU X;  5JDP A;  2IWW A;  5KAF O;  3LK3 B;  4GCQ A;  3POU A;  4N58 A;  4O3Y A;  4O4U A;  3SYB A;  5IYU A;  3AA6 B;  3AAA B;  3EMN X;  4FT6 A;  4F4B A;  4C4V A;  4AKR A;  4AYI D;  1BXW A;  4RJW A;  5EE2 A;  1QJP A;  4N59 A;  2XTQ A;  3A2S X;  3JTY A;  3T24 A;  1PHO A;  3SYS A;  3UAQ A;  4AKM A;  2ERV A;  4RL9 A;  2XE3 A;  4FSO A;  4FUV A;  4E1S A;  1MM5 A;  1HXX A;  2XE1 A;  2POR A;  2YNK A;  4C69 X;  4FZL A;  3HOL A;  4KR4 A;  2ZFG A;  5T5F A;  2MHL A;  2Y7S A;  4GCP A;  2R88 A;  3VE1 A;  3HW9 A;  1GFQ A;  1GFN A;  1ZHY A;  1IZN B;  4XNL A;  2ODJ A;  3AAE B;  1OPF A;  3PQU A;  3VY8 X;  4O49 A;  3BRY A;  4LSE A;  4D64 A;  1MPF A;  4N75 A;  7PRN A;  1ZHW A;  5ADX K;  2AXT O;  2R89 A;  4FES A;  4AUI A;  4PJ0 O;  4BUM X;  1Q9F A;  2W80 C;  1P4T A;  3AA0 A;  2XTR A;  3AA7 A;  3FYX A;  1T16 A;  3KVD D;  2KZ7 B;  5G39 A;  3VZW X;  3BRZ A;  3TZG A;  3VE2 A;  5GV0 A;  3DA4 A;  4N74 A;  1ZHX A;  2XE2 A;  3V8U A;  2N2M A;  3POQ A;  5G38 A;  5AFU L;  2R4P A;  2XMX A;  3NJT A;  5DL8 A;  3G7G A;  3DWN A;  2QTK A;  2R8A A;  2MNH A;  4Z3T A;  1BT9 A;  3DZM A;  2N2L A;  2LFU A;  2KXP A; 
#chains in the Genus database with same CATH homology
 2Y0K A;  5DL6 A;  2J4U P;  1GFM A;  1QJ8 A;  1G90 A;  4AYM C;  4XNK A;  3POX A;  1Q9G A;  3POR A;  1HXT A;  3T20 A;  2KC0 A;  4AZL A;  3UPG A;  2PRN A;  2J1N A;  3T0S A;  1GFP A;  1THQ A;  3PRN A;  2Y2X A;  1ORM A;  2M06 A;  2F1T A;  3LK4 2;  5G26 A;  1BH3 A;  2JMM A;  3LK3 A;  3LK2 A;  3AA1 A;  3AA0 B;  3AA6 A;  3AAA A;  4JFB A;  2F1V A;  5DL7 A;  1GFO A;  4LSH A;  1E54 A;  4AFK A;  4D5U A;  3HOE A;  4AKR B;  4U9C A;  4LSF A;  3DA3 A;  2XG6 A;  4GHB A;  3VY9 X;  1ZHT A;  2OMF A;  4AYN A;  1MM4 A;  4FMS A;  1IZN A;  3SZD A;  1PRN A;  3PQS A;  3UU2 A;  2FGR A;  4D65 A;  4O3Z A;  2X27 X;  4FRX A;  5DL5 A;  4JCH A;  3GP6 A;  1OSM A;  2Y0L A;  1HXU A;  4KRA A;  3SZV A;  5ADX L;  4FRT A;  3RBH A;  5AFU K;  3LK2 B;  3WI4 A;  4E1T A;  2FGQ X;  3AA1 B;  2GE4 A;  3AA7 B;  3QRC A;  4FSP A;  3VZT X;  2K0L A;  1ZHZ A;  3SY7 A;  3AAE A;  6PRN A;  2XE5 A;  3WI5 A;  3SY9 A;  4FZM A;  2LHF A;  4B61 A;  8PRN A;  2ZLD A;  4RLC A;  2K4T A;  4GCS A;  5PRN A;  3NSG A;  2KXP B;  2M07 A;  3QRA A;  4O3W A;  4PUX A;  2Y0H A;  4GF4 A;  4RLB A;  4QQ1 A;  4O3X B;  4FZN A;  4LSI A;  4G76 A;  3K19 A;  5FVN A;  4KR8 A;  3C5O A;  4O4X A;  4FOZ A;  3O0E A;  1QJ9 A;  5D5D A;  3LK4 1;  2O4V A;  4AYE C;  3HWB A;  2W81 C;  1H6S 1;  4AYD C;  2KZ7 A;  2YPV A;  1YS5 A;  4RJX A;  4G75 A;  2KDY A;  3VZU X;  5JDP A;  3LK3 B;  4GCQ A;  3POU A;  4N58 A;  4O3Y A;  4O4U A;  3SYB A;  5IYU A;  3AA6 B;  3AAA B;  3EMN X;  4FT6 A;  4F4B A;  4AKR A;  4AYI D;  1BXW A;  4RJW A;  5EE2 A;  1QJP A;  4N59 A;  2XTQ A;  3A2S X;  3JTY A;  3T24 A;  1PHO A;  3SYS A;  3UAQ A;  4AKM A;  2ERV A;  4RL9 A;  2XE3 A;  4FSO A;  4FUV A;  4E1S A;  1MM5 A;  1HXX A;  2XE1 A;  2POR A;  2YNK A;  4C69 X;  4FZL A;  3HOL A;  4KR4 A;  2ZFG A;  5T5F A;  2MHL A;  2Y7S A;  4GCP A;  3VE1 A;  3HW9 A;  1GFQ A;  1GFN A;  1ZHY A;  1IZN B;  4XNL A;  2ODJ A;  3AAE B;  1OPF A;  3PQU A;  3VY8 X;  4O49 A;  4D64 A;  4LSE A;  1MPF A;  7PRN A;  5ADX K;  1ZHW A;  4AUI A;  4BUM X;  4FES A;  1Q9F A;  2W80 C;  1P4T A;  3AA0 A;  2XTR A;  3AA7 A;  3FYX A;  3VZW X;  2KZ7 B;  3TZG A;  3VE2 A;  5GV0 A;  3DA4 A;  1ZHX A;  2XE2 A;  3V8U A;  2N2M A;  3POQ A;  5AFU L;  2XMX A;  5DL8 A;  3G7G A;  2QTK A;  2MNH A;  4Z3T A;  1BT9 A;  3KVD D;  2N2L A;  2LFU A;  2KXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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