The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
103
|
sequence length |
421
|
structure length |
421
|
Chain Sequence |
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRAPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transport protein
|
| source organism |
Escherichia coli
|
| publication title |
Transmembrane passage of hydrophobic compounds through a protein channel wall
pubmed doi rcsb |
| molecule keywords |
Long-chain fatty acid transport protein
|
| total genus |
103
|
| structure length |
421
|
| sequence length |
421
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-08-31 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Outer membrane protein transport protein (OMPP1/FadL/TodX) |
#chains in the Genus database with same CATH superfamily 1T1L A; 3BRY A; 3BS0 A; 3PGR A; 3PGS A; 2R4L A; 3DWN A; 2R4N A; 3BRZ A; 3DWO X; 3PGU A; 1T16 A; 2R89 A; 2R4O A; 3PF1 A; 2R88 A; 2R4P A; 2R8A A; #chains in the Genus database with same CATH topology 3SYS A; 2F1C X; 4K3C A; 5D5D A; 3PRN A; 5GV0 A; 3UPG A; 4D65 A; 1YS5 A; 3SZD A; 5G3A A; 1G90 A; 2KC0 A; 2M06 A; 4JFB A; 4PR7 A; 2JMM A; 4FES A; 3WI4 A; 4PJ0 O; 5ADX L; 4AYM C; 2F1T A; 2R88 A; 1ZHX A; 4GF4 A; 1BXW A; 4O3W A; 4C00 A; 3JCU O; 4F4B A; 4AYE C; 3G7G A; 3AA1 B; 2IWW A; 4N75 A; 3AA6 A; 2PRN A; 2Y0K A; 5GTH O; 1QJ9 A; 3PF1 A; 3HOL A; 2OMF A; 4C69 X; 1QJ8 A; 3AA1 A; 4KR8 A; 2O4V A; 3T24 A; 4O49 A; 5FVN A; 2X9K A; 5T5F A; 3AAA B; 2R89 A; 4G76 A; 3C5O A; 4O3Z A; 5E79 O; 2YPV A; 3VY9 X; 2K4T A; 1P4T A; 3AAA A; 3AA0 B; 4AUI A; 4AYI D; 2KXP B; 4GHB A; 1OSM A; 4N58 A; 5IYU A; 2R8A A; 4PUX A; 2J1N A; 3AA0 A; 3KZI O; 2ODJ A; 4UB6 O; 4Z3T A; 3A0B O; 3VZT X; 2KXP A; 1GFN A; 3AA6 B; 3GP6 A; 1ZHT A; 1S5L O; 5KAI O; 4AFK A; 2Y7S A; 3PGS A; 4AKR A; 2XE2 A; 2LFU A; 4FOZ A; 1HXX A; 3LK2 B; 1QJP A; 4FMS A; 2YNK A; 4FZM A; 4RL9 A; 3VE2 A; 2X27 X; 5AFU K; 5DL8 A; 5GTI O; 2XMX A; 4D64 A; 3T0S A; 3A0H O; 3POU A; 5G26 A; 1GFM A; 2N2M A; 3SY7 A; 2MNH A; 3SZV A; 3LK2 A; 5PRN A; 4FT6 A; 2AXT O; 4E1S A; 4FZL A; 4RLB A; 5JDP A; 1HXU A; 3VY8 X; 2ZLD A; 2FGR A; 3NSG A; 3UU2 A; 2JQY A; 5G39 A; 4N74 A; 2W80 C; 4QQ1 A; 3VZW X; 4D5U A; 3BRY A; 1BT9 A; 4K3B A; 4XNK A; 5DL7 A; 3BRZ A; 3PGU A; 3DZM A; 4FRT A; 4RJW A; 1Q9F A; 3SYB A; 1H6S 1; 1ZHZ A; 4LSH A; 4N59 A; 4FRX A; 4CTD A; 4FQE A; 2ZFG A; 3BS0 A; 3HW9 A; 4RLC A; 2XTQ A; 1MM5 A; 3DWN A; 1OPF A; 3DWO X; 4FSO A; 4G75 A; 2J4U P; 4AKR B; 2XE1 A; 3POR A; 5ADX K; 3EMN X; 2K0L A; 4FSP A; 4U9C A; 1ZHW A; 4LSI A; 3DA4 A; 3AA7 B; 3WI5 A; 4AYD C; 2IWV A; 3PGR A; 4AYN A; 4O3Y A; 3V8U A; 4AKM A; 1Q9G A; 5DL5 A; 3RBH A; 4GCS A; 3VE1 A; 2MHL A; 3AA7 A; 3HOE A; 4LSE A; 2LHF A; 5B5E O; 5DL6 A; 1PRN A; 2XE3 A; 3VZU X; 4FZN A; 3TZG A; 4KR4 A; 1MM4 A; 1ZHY A; 2F1V A; 2WJR A; 3LK4 2; 3LK3 B; 4C4V B; 4KRA A; 7PRN A; 2Y0H A; 2N2L A; 1GFQ A; 4IL6 O; 1HXT A; 1T1L A; 4O4X A; 5H2F O; 1BH3 A; 2KDY A; 2R4L A; 3K19 A; 3LK3 A; 1GFO A; 4AZL A; 4C4V A; 4O4U A; 2QTK A; 2M07 A; 4B61 A; 2R4P A; 2FGQ X; 3POX A; 4RJX A; 2WVP A; 3AAE B; 5B66 O; 5G38 A; 2POR A; 4JCH A; 2R4N A; 4LSF A; 4E1T A; 1T16 A; 2GE4 A; 1E54 A; 1THQ A; 2XE5 A; 3JTY A; 4BUM X; 3SY9 A; 3PQU A; 3AAE A; 2XTR A; 8PRN A; 2XG6 A; 3T20 A; 5AFU L; 1PHO A; 2KZ7 B; 4UB8 O; 3A2S X; 2WJQ A; 1IZN B; 3NJT A; 1ORM A; 2ERV A; 2R4O A; 3FYX A; 3PQS A; 5TIS O; 3QRA A; 4GCP A; 3WU2 O; 3KVD D; 2Y0L A; 2KZ7 A; 1MPF A; 3DA3 A; 3O0E A; 4XNL A; 5EE2 A; 1IZN A; 1GFP A; 3POQ A; 3HWB A; 6PRN A; 2W81 C; 2Y2X A; 3QRC A; 4FUV A; 5KAF O; 3UAQ A; 3LK4 1; 4O3X B; 4GCQ A; #chains in the Genus database with same CATH homology 1T1L A; 3BRY A; 3BS0 A; 3PGR A; 3PGS A; 2R4L A; 3DWN A; 2R4N A; 3BRZ A; 3DWO X; 3PGU A; 1T16 A; 2R89 A; 2R4O A; 3PF1 A; 2R88 A; 2R4P A; 2R8A A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
