1MM4A

Solution nmr structure of the outer membrane enzyme pagp in dpc micelles
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
170
structure length
170
Chain Sequence
MNADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQFLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Escherichia coli
publication title Solution Structure and Dynamics of the Outer Membrane Enzyme PagP by NMR
pubmed doi rcsb
molecule keywords CrcA protein
total genus 19
structure length 170
sequence length 170
ec nomenclature ec 2.3.1.251: Lipid IV(A) palmitoyltransferase.
pdb deposition date 2002-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07017 PagP Antimicrobial peptide resistance and lipid A acylation protein PagP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1mm4A00
1MM5A 4RLCA 2F1TA 2X27X 2M07A 3G7GA 1Q9GA 3GP6A 1Q9FA 4PUXA 1BXWA 2N2LA 1THQA 2LHFA 1QJPA 2N2MA 2MNHA 1G90A 2MHLA 1QJ9A 2M06A 2JMMA 1MM4A 2ERVA 2GE4A 2F1VA 3C5OA 1ORMA 2K0LA 3QRAA 3QRCA 1QJ8A 1P4TA
chains in the Genus database with same CATH superfamily
1PHOA 5B5EO 1MPFA 3UPGA 4UB8O 4FUVA 3G7GA 3GP6A 4AKRA 3T0SA 3HOLA 1Q9FA 3VE2A 3DWNA 3SYBA 4KRAA 2WJQA 3UAQA 1BXWA 4RLBA 1ZHYA 4AYMC 1THQA 5ADXL 2WVPA 3POQA 3RBHA 2KZ7A 2R4PA 4AYDC 4KR4A 4C4VB 1QJPA 4FRTA 4PR7A 5DL5A 3SZDA 3AA1A 3SZVA 5JDPA 4N58A 3WU2O 3JCUO 2KXPB 2PRNA 4C69X 2XE3A 3AAAB 1OSMA 3DWOX 1GFOA 2JMMA 3AAEA 1MM4A 3SY9A 3VZWX 4LSIA 5DL7A 2YNKA 2ODJA 4PJ0O 5GTIO 2R4NA 2XMXA 2ZFGA 2K0LA 4FRXA 4AZLA 5ADXK 2JQYA 4AKMA 3BRYA 2OMFA 4O3ZA 4G76A 4FOZA 1T16A 4G75A 2F1CX 2ZLDA 2M07A 4CTDA 1Q9GA 2Y0HA 3LK2A 3NJTA 4E1SA 2XE5A 4PUXA 3DA4A 1IZNB 3BRZA 3HW9A 3O0EA 4O4XA 3VZTX 3AA6B 1HXXA 3PF1A 5TISO 1HXUA 3JTYA 5AFUK 3LK3B 3PQUA 1ZHWA 4U9CA 3KVDD 2XTRA 4C00A 1OPFA 3HOEA 3A0HO 3POXA 5PRNA 3KZIO 3VY8X 4AFKA 2KDYA 2KZ7B 3AA0B 2ERVA 2F1VA 4KR8A 2Y2XA 4JCHA 4B61A 2X9KA 5G39A 2Y7SA 3QRCA 1QJ8A 2PORA 3LK41 3LK42 3PGSA 4O49A 4XNKA 2J1NA 2XE2A 1E54A 4K3BA 4AUIA 5AFUL 5DL6A 3V8UA 8PRNA 2XE1A 4FZLA 4C4VA 1HXTA 3AA7B 1ZHZA 4RLCA 4FZNA 4N75A 4RJWA 5KAIO 3VZUX 3WI5A 2QTKA 4QQ1A 2KXPA 4D65A 2IWVA 2R8AA 3AAAA 1GFPA 2LFUA 2KC0A 3HWBA 4LSHA 4BUMX 3FYXA 4Z3TA 4GF4A 5T5FA 4LSEA 5EE2A 2LHFA 2IWWA 4GCPA 2XTQA 3PGUA 4UB6O 3A0BO 3BS0A 2N2MA 2Y0LA 2MNHA 2R4LA 2K4TA 2WJRA 3A2SX 4FQEA 4FSOA 4LSFA 1GFQA 4O3WA 4AKRB 4AYID 4F4BA 3DZMA 1GFMA 2R4OA 4FESA 3EMNX 4IL6O 2MHLA 4GHBA 3VY9X 1G90A 1QJ9A 1ZHTA 1ZHXA 4O3YA 1BH3A 4E1TA 1T1LA 2GE4A 4GCQA 1ORMA 4FT6A 3AA1B 5G38A 3TZGA 2W80C 1IZNA 4O4UA 1P4TA 2FGQX 3PGRA 4D64A 3UU2A 3SYSA 3AA6A 2R89A 2YPVA 1MM5A 3PORA 3PQSA 3NSGA 4FMSA 2F1TA 3AAEB 3LK3A 7PRNA 2FGRA 2X27X 3SY7A 2W81C 4AYEC 5GTHO 5KAFO 4K3CA 3POUA 4D5UA 2N2LA 3AA0A 2Y0KA 1BT9A 3PRNA 4JFBA 1YS5A 5G26A 5GV0A 2J4UP 3VE1A 6PRNA 2O4VA 4RL9A 5E79O 5D5DA 1S5LO 4O3XB 3LK2B 5FVNA 4FZMA 5H2FO 2AXTO 1H6S1 2M06A 3AA7A 4GCSA 4N74A 5IYUA 5B66O 4FSPA 1PRNA 4XNLA 3DA3A 3K19A 5DL8A 3C5OA 4RJXA 1GFNA 3QRAA 2R88A 5G3AA 4AYNA 4N59A 3T24A 3WI4A 2XG6A 3T20A
chains in the Genus database with same CATH topology
1PHOA 1MPFA 3UPGA 4FUVA 3G7GA 3GP6A 4AKRA 3T0SA 3HOLA 1Q9FA 3VE2A 3SYBA 4KRAA 3UAQA 1BXWA 4RLBA 1ZHYA 4AYMC 1THQA 5ADXL 3POQA 3RBHA 2KZ7A 4AYDC 4KR4A 1QJPA 4FRTA 5DL5A 3SZDA 3AA1A 3SZVA 5JDPA 4N58A 2KXPB 2PRNA 4C69X 2XE3A 3AAAB 1OSMA 1GFOA 2JMMA 3AAEA 1MM4A 3SY9A 3VZWX 4LSIA 5DL7A 2YNKA 2ODJA 2XMXA 2ZFGA 2K0LA 4FRXA 4AZLA 5ADXK 4AKMA 2OMFA 4O3ZA 4G76A 4FOZA 4G75A 2ZLDA 2M07A 1Q9GA 2Y0HA 3LK2A 4E1SA 2XE5A 4PUXA 3DA4A 1IZNB 3O0EA 3HW9A 4O4XA 3VZTX 3AA6B 1HXXA 1HXUA 3JTYA 5AFUK 3LK3B 3PQUA 1ZHWA 4U9CA 3KVDD 2XTRA 1OPFA 3HOEA 3POXA 5PRNA 3VY8X 4AFKA 2KDYA 2KZ7B 3AA0B 2ERVA 2F1VA 4KR8A 2Y2XA 4JCHA 4B61A 2Y7SA 3QRCA 1QJ8A 2PORA 3LK41 3LK42 4O49A 4XNKA 4AUIA 2J1NA 2XE2A 1E54A 5AFUL 5DL6A 3V8UA 8PRNA 2XE1A 4FZLA 1HXTA 3AA7B 1ZHZA 4RLCA 4FZNA 4RJWA 3WI5A 3VZUX 2QTKA 4QQ1A 2KXPA 4D65A 3AAAA 3HWBA 1GFPA 2LFUA 2KC0A 4LSHA 4Z3TA 4BUMX 3FYXA 4GF4A 5T5FA 4LSEA 5EE2A 2LHFA 4GCPA 2XTQA 2N2MA 2Y0LA 2MNHA 3A2SX 2K4TA 4FSOA 4LSFA 4AKRB 1GFQA 4O3WA 4AYID 4F4BA 4FESA 1GFMA 1G90A 3EMNX 3VY9X 2MHLA 4GHBA 1QJ9A 1ZHTA 1ZHXA 4O3YA 1BH3A 4E1TA 2GE4A 4GCQA 1ORMA 4FT6A 3AA1B 3TZGA 2W80C 1IZNA 4O4UA 1P4TA 2FGQX 4D64A 3UU2A 3SYSA 3AA6A 2YPVA 1MM5A 3PORA 3PQSA 3NSGA 4FMSA 2F1TA 3AAEB 3LK3A 7PRNA 2FGRA 2X27X 3SY7A 2W81C 4AYEC 3POUA 4D5UA 2N2LA 3AA0A 2Y0KA 1BT9A 3PRNA 4JFBA 1YS5A 5G26A 5GV0A 2J4UP 3VE1A 6PRNA 2O4VA 4RL9A 5D5DA 4O3XB 3LK2B 5FVNA 4FZMA 5IYUA 1H6S1 2M06A 3AA7A 4GCSA 4FSPA 1PRNA 4XNLA 3DA3A 3K19A 5DL8A 3C5OA 4RJXA 1GFNA 3QRAA 4AYNA 4N59A 3T24A 3WI4A 2XG6A 3T20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM5 A;  4RLC A;  2F1T A;  2X27 X;  2M07 A;  3G7G A;  1Q9G A;  3GP6 A;  1Q9F A;  4PUX A;  1BXW A;  2N2L A;  1THQ A;  2LHF A;  1QJP A;  2N2M A;  2MNH A;  1G90 A;  2MHL A;  1QJ9 A;  2M06 A;  2JMM A;  1MM4 A;  2ERV A;  2GE4 A;  2F1V A;  3C5O A;  1ORM A;  2K0L A;  3QRA A;  3QRC A;  1QJ8 A;  1P4T A; 
#chains in the Genus database with same CATH topology
 1PHO A;  5B5E O;  1MPF A;  3UPG A;  4UB8 O;  4FUV A;  3G7G A;  3GP6 A;  4AKR A;  3T0S A;  3HOL A;  1Q9F A;  3VE2 A;  3DWN A;  3SYB A;  4KRA A;  2WJQ A;  3UAQ A;  1BXW A;  4RLB A;  1ZHY A;  4AYM C;  1THQ A;  5ADX L;  2WVP A;  3POQ A;  3RBH A;  2KZ7 A;  2R4P A;  4AYD C;  4KR4 A;  4C4V B;  1QJP A;  4FRT A;  4PR7 A;  5DL5 A;  3SZD A;  3AA1 A;  3SZV A;  5JDP A;  4N58 A;  3WU2 O;  3JCU O;  2KXP B;  2PRN A;  4C69 X;  2XE3 A;  3AAA B;  1OSM A;  3DWO X;  1GFO A;  2JMM A;  3AAE A;  1MM4 A;  3SY9 A;  3VZW X;  4LSI A;  5DL7 A;  2YNK A;  2ODJ A;  4PJ0 O;  5GTI O;  2R4N A;  2XMX A;  2ZFG A;  2K0L A;  4FRX A;  4AZL A;  5ADX K;  2JQY A;  4AKM A;  3BRY A;  2OMF A;  4O3Z A;  4G76 A;  4FOZ A;  1T16 A;  4G75 A;  2F1C X;  2ZLD A;  2M07 A;  4CTD A;  1Q9G A;  2Y0H A;  3LK2 A;  3NJT A;  4E1S A;  2XE5 A;  4PUX A;  3DA4 A;  1IZN B;  3BRZ A;  3HW9 A;  3O0E A;  4O4X A;  3VZT X;  3AA6 B;  1HXX A;  3PF1 A;  5TIS O;  1HXU A;  3JTY A;  5AFU K;  3LK3 B;  3PQU A;  1ZHW A;  4U9C A;  3KVD D;  2XTR A;  4C00 A;  1OPF A;  3HOE A;  3A0H O;  3POX A;  5PRN A;  3KZI O;  3VY8 X;  4AFK A;  2KDY A;  2KZ7 B;  3AA0 B;  2ERV A;  2F1V A;  4KR8 A;  2Y2X A;  4JCH A;  4B61 A;  2X9K A;  5G39 A;  2Y7S A;  3QRC A;  1QJ8 A;  2POR A;  3LK4 1;  3LK4 2;  3PGS A;  4O49 A;  4XNK A;  2J1N A;  2XE2 A;  1E54 A;  4K3B A;  4AUI A;  5AFU L;  5DL6 A;  3V8U A;  8PRN A;  2XE1 A;  4FZL A;  4C4V A;  1HXT A;  3AA7 B;  1ZHZ A;  4RLC A;  4FZN A;  4N75 A;  4RJW A;  5KAI O;  3VZU X;  3WI5 A;  2QTK A;  4QQ1 A;  2KXP A;  4D65 A;  2IWV A;  2R8A A;  3AAA A;  1GFP A;  2LFU A;  2KC0 A;  3HWB A;  4LSH A;  4BUM X;  3FYX A;  4Z3T A;  4GF4 A;  5T5F A;  4LSE A;  5EE2 A;  2LHF A;  2IWW A;  4GCP A;  2XTQ A;  3PGU A;  4UB6 O;  3A0B O;  3BS0 A;  2N2M A;  2Y0L A;  2MNH A;  2R4L A;  2K4T A;  2WJR A;  3A2S X;  4FQE A;  4FSO A;  4LSF A;  1GFQ A;  4O3W A;  4AKR B;  4AYI D;  4F4B A;  3DZM A;  1GFM A;  2R4O A;  4FES A;  3EMN X;  4IL6 O;  2MHL A;  4GHB A;  3VY9 X;  1G90 A;  1QJ9 A;  1ZHT A;  1ZHX A;  4O3Y A;  1BH3 A;  4E1T A;  1T1L A;  2GE4 A;  4GCQ A;  1ORM A;  4FT6 A;  3AA1 B;  5G38 A;  3TZG A;  2W80 C;  1IZN A;  4O4U A;  1P4T A;  2FGQ X;  3PGR A;  4D64 A;  3UU2 A;  3SYS A;  3AA6 A;  2R89 A;  2YPV A;  1MM5 A;  3POR A;  3PQS A;  3NSG A;  4FMS A;  2F1T A;  3AAE B;  3LK3 A;  7PRN A;  2FGR A;  2X27 X;  3SY7 A;  2W81 C;  4AYE C;  5GTH O;  5KAF O;  4K3C A;  3POU A;  4D5U A;  2N2L A;  3AA0 A;  2Y0K A;  1BT9 A;  3PRN A;  4JFB A;  1YS5 A;  5G26 A;  5GV0 A;  2J4U P;  3VE1 A;  6PRN A;  2O4V A;  4RL9 A;  5E79 O;  5D5D A;  1S5L O;  4O3X B;  3LK2 B;  5FVN A;  4FZM A;  5H2F O;  2AXT O;  1H6S 1;  2M06 A;  3AA7 A;  4GCS A;  4N74 A;  5IYU A;  5B66 O;  4FSP A;  1PRN A;  4XNL A;  3DA3 A;  3K19 A;  5DL8 A;  3C5O A;  4RJX A;  1GFN A;  3QRA A;  2R88 A;  5G3A A;  4AYN A;  4N59 A;  3T24 A;  3WI4 A;  2XG6 A;  3T20 A; 
#chains in the Genus database with same CATH homology
 1PHO A;  1MPF A;  3UPG A;  4FUV A;  3G7G A;  3GP6 A;  4AKR A;  3T0S A;  3HOL A;  1Q9F A;  3VE2 A;  3SYB A;  4KRA A;  3UAQ A;  1BXW A;  4RLB A;  1ZHY A;  4AYM C;  1THQ A;  5ADX L;  3POQ A;  3RBH A;  2KZ7 A;  4AYD C;  4KR4 A;  1QJP A;  4FRT A;  5DL5 A;  3SZD A;  3AA1 A;  3SZV A;  5JDP A;  4N58 A;  2KXP B;  2PRN A;  4C69 X;  2XE3 A;  3AAA B;  1OSM A;  1GFO A;  2JMM A;  3AAE A;  1MM4 A;  3SY9 A;  3VZW X;  4LSI A;  5DL7 A;  2YNK A;  2ODJ A;  2XMX A;  2ZFG A;  2K0L A;  4FRX A;  4AZL A;  5ADX K;  4AKM A;  2OMF A;  4O3Z A;  4G76 A;  4FOZ A;  4G75 A;  2ZLD A;  2M07 A;  1Q9G A;  2Y0H A;  3LK2 A;  4E1S A;  2XE5 A;  4PUX A;  3DA4 A;  1IZN B;  3O0E A;  3HW9 A;  4O4X A;  3VZT X;  3AA6 B;  1HXX A;  1HXU A;  3JTY A;  5AFU K;  3LK3 B;  3PQU A;  1ZHW A;  4U9C A;  3KVD D;  2XTR A;  1OPF A;  3HOE A;  3POX A;  5PRN A;  3VY8 X;  4AFK A;  2KDY A;  2KZ7 B;  3AA0 B;  2ERV A;  2F1V A;  4KR8 A;  2Y2X A;  4JCH A;  4B61 A;  2Y7S A;  3QRC A;  1QJ8 A;  2POR A;  3LK4 1;  3LK4 2;  4O49 A;  4XNK A;  4AUI A;  2J1N A;  2XE2 A;  1E54 A;  5AFU L;  5DL6 A;  3V8U A;  8PRN A;  2XE1 A;  4FZL A;  1HXT A;  3AA7 B;  1ZHZ A;  4RLC A;  4FZN A;  4RJW A;  3WI5 A;  3VZU X;  2QTK A;  4QQ1 A;  2KXP A;  4D65 A;  3AAA A;  3HWB A;  1GFP A;  2LFU A;  2KC0 A;  4LSH A;  4Z3T A;  4BUM X;  3FYX A;  4GF4 A;  5T5F A;  4LSE A;  5EE2 A;  2LHF A;  4GCP A;  2XTQ A;  2N2M A;  2Y0L A;  2MNH A;  3A2S X;  2K4T A;  4FSO A;  4LSF A;  4AKR B;  1GFQ A;  4O3W A;  4AYI D;  4F4B A;  4FES A;  1GFM A;  1G90 A;  3EMN X;  3VY9 X;  2MHL A;  4GHB A;  1QJ9 A;  1ZHT A;  1ZHX A;  4O3Y A;  1BH3 A;  4E1T A;  2GE4 A;  4GCQ A;  1ORM A;  4FT6 A;  3AA1 B;  3TZG A;  2W80 C;  1IZN A;  4O4U A;  1P4T A;  2FGQ X;  4D64 A;  3UU2 A;  3SYS A;  3AA6 A;  2YPV A;  1MM5 A;  3POR A;  3PQS A;  3NSG A;  4FMS A;  2F1T A;  3AAE B;  3LK3 A;  7PRN A;  2FGR A;  2X27 X;  3SY7 A;  2W81 C;  4AYE C;  3POU A;  4D5U A;  2N2L A;  3AA0 A;  2Y0K A;  1BT9 A;  3PRN A;  4JFB A;  1YS5 A;  5G26 A;  5GV0 A;  2J4U P;  3VE1 A;  6PRN A;  2O4V A;  4RL9 A;  5D5D A;  4O3X B;  3LK2 B;  5FVN A;  4FZM A;  5IYU A;  1H6S 1;  2M06 A;  3AA7 A;  4GCS A;  4FSP A;  1PRN A;  4XNL A;  3DA3 A;  3K19 A;  5DL8 A;  3C5O A;  4RJX A;  1GFN A;  3QRA A;  4AYN A;  4N59 A;  3T24 A;  3WI4 A;  2XG6 A;  3T20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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