3SZDA

Crystal structure of pseudomonas aeruginosa occk2 (opdf)
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
392
structure length
368
Chain Sequence
GQGFLEDAKASLTARNFHLHRNFVGGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGRFDENRLIVSYPLSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords porin
total genus 96
structure length 368
sequence length 392
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szdA01
8PRNA 1PHOA 4KR4A 1BT9A 1H6S1 1BH3A 4BUMX 3T20A 4GCPA 3VZTX 4LSHA 3EMNX 3FYXA 4RJXA 4KR8A 3WI4A 5DL7A 2XE2A 2XE1A 3K19A 3SY7A 4KRAA 3A2SX 2PRNA 4D65A 1GFMA 3SZDA 1OPFA 4C69X 5JDPA 4FSOA 4FMSA 7PRNA 1HXXA 4AUIA 1GFOA 5PRNA 3UU2A 3WI5A 1MPFA 4LSEA 2ZLDA 2FGQX 2OMFA 2Y2XA 3SYBA 2FGRA 3POQA 3SY9A 4FOZA 3JTYA 4JFBA 2J4UP 3NSGA 2O4VA 3VY8X 3O0EA 2Y0KA 3HW9A 3PRNA 6PRNA 2ODJA 4FRTA 1GFQA 1GFNA 4GCSA 3POUA 1E54A 2XE3A 4D64A 4D5UA 3UPGA 3T0SA 3PORA 2XG6A 3VZWX 2Y0LA 1GFPA 2J1NA 4GCQA 4LSFA 5DL5A 1PRNA 2XE5A 5DL6A 3SZVA 3HWBA 4FRXA 5FVNA 3T24A 2Y0HA 2PORA 2QTKA 3SYSA 3VZUX 2ZFGA 4LSIA 3POXA 3VY9X 1OSMA 1HXTA 4FSPA 2K4TA 4RJWA 4FT6A 5DL8A 1HXUA
chains in the Genus database with same CATH superfamily
8PRNA 1BXWA 1PHOA 2X9KA 4KR4A 3DWOX 1BT9A 1H6S1 1MM5A 3AAAB 4FZMA 1BH3A 5IYUA 4O3XB 4K3CA 4BUMX 2AXTO 4XNLA 5ADXK 4Z3TA 3T20A 4GCPA 5GTIO 3VZTX 3RBHA 4LSHA 3DA4A 4AYID 4AKMA 3EMNX 3FYXA 5G26A 1QJ8A 4RJXA 4C4VA 4CTDA 3LK3A 1Q9GA 1T1LA 2IWVA 2KDYA 1QJPA 2JMMA 4FUVA 4KR8A 2F1TA 2F1CX 3LK3B 5DL7A 3WI4A 3A0BO 5H2FO 2XE2A 2XE1A 2MNHA 4E1SA 3K19A 3AAEA 3PGSA 3HOEA 4C4VB 3SY7A 4KRAA 4C00A 3A2SX 2PRNA 1S5LO 4D65A 2X27X 4RLCA 4QQ1A 1GFMA 4FQEA 2XMXA 3AA1B 3KVDD 3AA7A 3SZDA 1OPFA 5ADXL 4N58A 5E79O 1ZHXA 4C69X 3BRZA 2R4LA 2R4NA 3PGRA 4FSOA 4FMSA 7PRNA 1HXXA 5GV0A 5JDPA 1MM4A 3NJTA 4AUIA 2GE4A 1GFOA 4UB8O 5PRNA 3UU2A 4XNKA 1YS5A 3DWNA 3WI5A 5TISO 3LK42 3PQUA 1MPFA 4LSEA 5B5EO 2W81C 1ZHZA 3AA0B 2ZLDA 1ZHYA 2ERVA 2FGQX 4U9CA 4G76A 2OMFA 2Y2XA 1THQA 4G75A 3SYBA 4O3YA 2FGRA 2XTRA 3POQA 1IZNA 3SY9A 3AAAA 4AYNA 4FOZA 3JTYA 4JFBA 3KZIO 2YNKA 2K0LA 2M06A 4AYDC 2KZ7B 2N2LA 2J4UP 3NSGA 5KAIO 1Q9FA 2O4VA 2WJRA 3GP6A 3VY8X 2W80C 5EE2A 4N59A 3O0EA 2Y0KA 4GHBA 2KZ7A 2R89A 3V8UA 3HW9A 3PRNA 6PRNA 1P4TA 2ODJA 3A0HO 4FRTA 3AA6B 2LHFA 5KAFO 2KXPA 4AYMC 1QJ9A 2MHLA 2LFUA 2WJQA 3WU2O 1GFQA 1GFNA 3BS0A 4GCSA 1ZHWA 4GF4A 4IL6O 3POUA 4AYEC 2R88A 3QRAA 3UAQA 3LK2A 3AAEB 4O3WA 5DL8A 2KXPB 5GTHO 3AA6A 1E54A 3DZMA 3LK2B 2XE3A 4F4BA 4D64A 3VE2A 2R8AA 4D5UA 2JQYA 4N75A 3UPGA 4O4XA 4AFKA 1T16A 4FESA 2XG6A 2WVPA 3G7GA 3PORA 3T0SA 2Y0LA 3PF1A 2M07A 3VZWX 5AFUK 5AFUL 4FZLA 1GFPA 2J1NA 4GCQA 4LSFA 3HOLA 4RL9A 5DL5A 1IZNB 2YPVA 1PRNA 2XE5A 1G90A 5DL6A 3AA7B 5D5DA 5G39A 3SZVA 4RLBA 3AA1A 3HWBA 4AZLA 4O4UA 3LK41 1ORMA 4B61A 3BRYA 4FRXA 5FVNA 2Y7SA 2Y0HA 3C5OA 4PJ0O 3T24A 3AA0A 2PORA 4PR7A 2QTKA 4E1TA 4N74A 5B66O 4JCHA 3SYSA 3VZUX 2ZFGA 2KC0A 1ZHTA 2N2MA 4LSIA 3DA3A 3POXA 3QRCA 4O49A 4UB6O 3VY9X 1OSMA 4AKRB 3VE1A 2R4PA 3PQSA 2XTQA 2F1VA 4K3BA 3JCUO 1HXTA 5T5FA 4FSPA 3TZGA 4AKRA 2K4TA 4O3ZA 5G38A 4FZNA 4RJWA 2R4OA 4PUXA 4FT6A 5G3AA 3PGUA 1HXUA 2IWWA
chains in the Genus database with same CATH topology
8PRNA 1BXWA 1PHOA 4KR4A 1BT9A 1H6S1 1MM5A 3AAAB 4FZMA 1BH3A 5IYUA 4O3XB 4BUMX 4XNLA 5ADXK 4Z3TA 3T20A 4GCPA 3VZTX 4AYID 3RBHA 4LSHA 3DA4A 4AKMA 3EMNX 3FYXA 5G26A 1QJ8A 4RJXA 3LK3A 1Q9GA 2KDYA 4FUVA 1QJPA 2JMMA 4KR8A 2F1TA 3WI4A 3LK3B 5DL7A 2XE2A 2XE1A 2MNHA 4E1SA 3K19A 3AAEA 3HOEA 3SY7A 4KRAA 3A2SX 2PRNA 4D65A 2X27X 4RLCA 4QQ1A 1GFMA 2XMXA 3AA1B 3KVDD 3AA7A 3SZDA 1OPFA 5ADXL 4N58A 1ZHXA 4C69X 5JDPA 4FSOA 4FMSA 7PRNA 1HXXA 5GV0A 1MM4A 4AUIA 2GE4A 1GFOA 5PRNA 3UU2A 4XNKA 1YS5A 3WI5A 3LK42 3PQUA 1MPFA 4LSEA 2W81C 1ZHZA 3AA0B 2ZLDA 1ZHYA 2ERVA 2FGQX 4U9CA 4G76A 2OMFA 2Y2XA 1THQA 4G75A 3SYBA 4O3YA 2FGRA 2XTRA 3POQA 1IZNA 3SY9A 3AAAA 4AYNA 4FOZA 3JTYA 4JFBA 2YNKA 2K0LA 2M06A 4AYDC 2KZ7B 2N2LA 2J4UP 3NSGA 1Q9FA 2O4VA 3GP6A 3VY8X 2W80C 5EE2A 4N59A 3O0EA 2Y0KA 4GHBA 2KZ7A 3V8UA 3HW9A 3PRNA 6PRNA 1P4TA 2ODJA 4FRTA 3AA6B 2LHFA 2KXPA 4AYMC 1QJ9A 2MHLA 2LFUA 1GFQA 1GFNA 4GCSA 4GF4A 1ZHWA 4AYEC 3POUA 3QRAA 3UAQA 3LK2A 3AAEB 4O3WA 5DL8A 2KXPB 3AA6A 1E54A 3LK2B 2XE3A 4F4BA 4D64A 3VE2A 4D5UA 3UPGA 4O4XA 4AFKA 4FESA 2XG6A 3G7GA 3PORA 3T0SA 3VZWX 2Y0LA 5AFUK 2M07A 5AFUL 4FZLA 1GFPA 2J1NA 4GCQA 4LSFA 3HOLA 4RL9A 5DL5A 1IZNB 2YPVA 1PRNA 2XE5A 1G90A 5DL6A 3AA7B 5D5DA 3SZVA 4RLBA 3AA1A 3HWBA 4AZLA 4O4UA 3LK41 1ORMA 4B61A 4FRXA 5FVNA 3T24A 2Y7SA 2Y0HA 3C5OA 3AA0A 2PORA 2QTKA 4E1TA 4JCHA 3SYSA 3VZUX 2ZFGA 2KC0A 1ZHTA 2N2MA 4LSIA 3DA3A 3POXA 3QRCA 3VY9X 1OSMA 4AKRB 3VE1A 3PQSA 2XTQA 2F1VA 1HXTA 5T5FA 4FSPA 3TZGA 4AKRA 2K4TA 4O3ZA 4FZNA 4RJWA 4PUXA 4FT6A 4O49A 1HXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 8PRN A;  1PHO A;  4KR4 A;  1BT9 A;  1H6S 1;  1BH3 A;  4BUM X;  3T20 A;  4GCP A;  3VZT X;  4LSH A;  3EMN X;  3FYX A;  4RJX A;  4KR8 A;  3WI4 A;  5DL7 A;  2XE2 A;  2XE1 A;  3K19 A;  3SY7 A;  4KRA A;  3A2S X;  2PRN A;  4D65 A;  1GFM A;  3SZD A;  1OPF A;  4C69 X;  5JDP A;  4FSO A;  4FMS A;  7PRN A;  1HXX A;  4AUI A;  1GFO A;  5PRN A;  3UU2 A;  3WI5 A;  1MPF A;  4LSE A;  2ZLD A;  2FGQ X;  2OMF A;  2Y2X A;  3SYB A;  2FGR A;  3POQ A;  3SY9 A;  4FOZ A;  3JTY A;  4JFB A;  2J4U P;  3NSG A;  2O4V A;  3VY8 X;  3O0E A;  2Y0K A;  3HW9 A;  3PRN A;  6PRN A;  2ODJ A;  4FRT A;  1GFQ A;  1GFN A;  4GCS A;  3POU A;  1E54 A;  2XE3 A;  4D64 A;  4D5U A;  3UPG A;  3T0S A;  3POR A;  2XG6 A;  3VZW X;  2Y0L A;  1GFP A;  2J1N A;  4GCQ A;  4LSF A;  5DL5 A;  1PRN A;  2XE5 A;  5DL6 A;  3SZV A;  3HWB A;  4FRX A;  5FVN A;  3T24 A;  2Y0H A;  2POR A;  2QTK A;  3SYS A;  3VZU X;  2ZFG A;  4LSI A;  3POX A;  3VY9 X;  1OSM A;  1HXT A;  4FSP A;  2K4T A;  4RJW A;  4FT6 A;  5DL8 A;  1HXU A; 
#chains in the Genus database with same CATH topology
 8PRN A;  1BXW A;  1PHO A;  2X9K A;  4KR4 A;  3DWO X;  1BT9 A;  1H6S 1;  1MM5 A;  3AAA B;  4FZM A;  1BH3 A;  5IYU A;  4O3X B;  4K3C A;  4BUM X;  2AXT O;  4XNL A;  5ADX K;  4Z3T A;  3T20 A;  4GCP A;  5GTI O;  3VZT X;  3RBH A;  4LSH A;  3DA4 A;  4AYI D;  4AKM A;  3EMN X;  3FYX A;  5G26 A;  1QJ8 A;  4RJX A;  4C4V A;  4CTD A;  3LK3 A;  1Q9G A;  1T1L A;  2IWV A;  2KDY A;  1QJP A;  2JMM A;  4FUV A;  4KR8 A;  2F1T A;  2F1C X;  3LK3 B;  5DL7 A;  3WI4 A;  3A0B O;  5H2F O;  2XE2 A;  2XE1 A;  2MNH A;  4E1S A;  3K19 A;  3AAE A;  3PGS A;  3HOE A;  4C4V B;  3SY7 A;  4KRA A;  4C00 A;  3A2S X;  2PRN A;  1S5L O;  4D65 A;  2X27 X;  4RLC A;  4QQ1 A;  1GFM A;  4FQE A;  2XMX A;  3AA1 B;  3KVD D;  3AA7 A;  3SZD A;  1OPF A;  5ADX L;  4N58 A;  5E79 O;  1ZHX A;  4C69 X;  3BRZ A;  2R4L A;  2R4N A;  3PGR A;  4FSO A;  4FMS A;  7PRN A;  1HXX A;  5GV0 A;  5JDP A;  1MM4 A;  3NJT A;  4AUI A;  2GE4 A;  1GFO A;  4UB8 O;  5PRN A;  3UU2 A;  4XNK A;  1YS5 A;  3DWN A;  3WI5 A;  5TIS O;  3LK4 2;  3PQU A;  1MPF A;  4LSE A;  5B5E O;  2W81 C;  1ZHZ A;  3AA0 B;  2ZLD A;  1ZHY A;  2ERV A;  2FGQ X;  4U9C A;  4G76 A;  2OMF A;  2Y2X A;  1THQ A;  4G75 A;  3SYB A;  4O3Y A;  2FGR A;  2XTR A;  3POQ A;  1IZN A;  3SY9 A;  3AAA A;  4AYN A;  4FOZ A;  3JTY A;  4JFB A;  3KZI O;  2YNK A;  2K0L A;  2M06 A;  4AYD C;  2KZ7 B;  2N2L A;  2J4U P;  3NSG A;  5KAI O;  1Q9F A;  2O4V A;  2WJR A;  3GP6 A;  3VY8 X;  2W80 C;  5EE2 A;  4N59 A;  3O0E A;  2Y0K A;  4GHB A;  2KZ7 A;  2R89 A;  3V8U A;  3HW9 A;  3PRN A;  6PRN A;  1P4T A;  2ODJ A;  3A0H O;  4FRT A;  3AA6 B;  2LHF A;  5KAF O;  2KXP A;  4AYM C;  1QJ9 A;  2MHL A;  2LFU A;  2WJQ A;  3WU2 O;  1GFQ A;  1GFN A;  3BS0 A;  4GCS A;  1ZHW A;  4GF4 A;  4IL6 O;  3POU A;  4AYE C;  2R88 A;  3QRA A;  3UAQ A;  3LK2 A;  3AAE B;  4O3W A;  5DL8 A;  2KXP B;  5GTH O;  3AA6 A;  1E54 A;  3DZM A;  3LK2 B;  2XE3 A;  4F4B A;  4D64 A;  3VE2 A;  2R8A A;  4D5U A;  2JQY A;  4N75 A;  3UPG A;  4O4X A;  4AFK A;  1T16 A;  4FES A;  2XG6 A;  2WVP A;  3G7G A;  3POR A;  3T0S A;  2Y0L A;  3PF1 A;  2M07 A;  3VZW X;  5AFU K;  5AFU L;  4FZL A;  1GFP A;  2J1N A;  4GCQ A;  4LSF A;  3HOL A;  4RL9 A;  5DL5 A;  1IZN B;  2YPV A;  1PRN A;  2XE5 A;  1G90 A;  5DL6 A;  3AA7 B;  5D5D A;  5G39 A;  3SZV A;  4RLB A;  3AA1 A;  3HWB A;  4AZL A;  4O4U A;  3LK4 1;  1ORM A;  4B61 A;  3BRY A;  4FRX A;  5FVN A;  2Y7S A;  2Y0H A;  3C5O A;  4PJ0 O;  3T24 A;  3AA0 A;  2POR A;  4PR7 A;  2QTK A;  4E1T A;  4N74 A;  5B66 O;  4JCH A;  3SYS A;  3VZU X;  2ZFG A;  2KC0 A;  1ZHT A;  2N2M A;  4LSI A;  3DA3 A;  3POX A;  3QRC A;  4O49 A;  4UB6 O;  3VY9 X;  1OSM A;  4AKR B;  3VE1 A;  2R4P A;  3PQS A;  2XTQ A;  2F1V A;  4K3B A;  3JCU O;  1HXT A;  5T5F A;  4FSP A;  3TZG A;  4AKR A;  2K4T A;  4O3Z A;  5G38 A;  4FZN A;  4RJW A;  2R4O A;  4PUX A;  4FT6 A;  5G3A A;  3PGU A;  1HXU A;  2IWW A; 
#chains in the Genus database with same CATH homology
 8PRN A;  1BXW A;  1PHO A;  4KR4 A;  1BT9 A;  1H6S 1;  1MM5 A;  3AAA B;  4FZM A;  1BH3 A;  5IYU A;  4O3X B;  4BUM X;  4XNL A;  5ADX K;  4Z3T A;  3T20 A;  4GCP A;  3VZT X;  4AYI D;  3RBH A;  4LSH A;  3DA4 A;  4AKM A;  3EMN X;  3FYX A;  5G26 A;  1QJ8 A;  4RJX A;  3LK3 A;  1Q9G A;  2KDY A;  4FUV A;  1QJP A;  2JMM A;  4KR8 A;  2F1T A;  3WI4 A;  3LK3 B;  5DL7 A;  2XE2 A;  2XE1 A;  2MNH A;  4E1S A;  3K19 A;  3AAE A;  3HOE A;  3SY7 A;  4KRA A;  3A2S X;  2PRN A;  4D65 A;  2X27 X;  4RLC A;  4QQ1 A;  1GFM A;  2XMX A;  3AA1 B;  3KVD D;  3AA7 A;  3SZD A;  1OPF A;  5ADX L;  4N58 A;  1ZHX A;  4C69 X;  5JDP A;  4FSO A;  4FMS A;  7PRN A;  1HXX A;  5GV0 A;  1MM4 A;  4AUI A;  2GE4 A;  1GFO A;  5PRN A;  3UU2 A;  4XNK A;  1YS5 A;  3WI5 A;  3LK4 2;  3PQU A;  1MPF A;  4LSE A;  2W81 C;  1ZHZ A;  3AA0 B;  2ZLD A;  1ZHY A;  2ERV A;  2FGQ X;  4U9C A;  4G76 A;  2OMF A;  2Y2X A;  1THQ A;  4G75 A;  3SYB A;  4O3Y A;  2FGR A;  2XTR A;  3POQ A;  1IZN A;  3SY9 A;  3AAA A;  4AYN A;  4FOZ A;  3JTY A;  4JFB A;  2YNK A;  2K0L A;  2M06 A;  4AYD C;  2KZ7 B;  2N2L A;  2J4U P;  3NSG A;  1Q9F A;  2O4V A;  3GP6 A;  3VY8 X;  2W80 C;  5EE2 A;  4N59 A;  3O0E A;  2Y0K A;  4GHB A;  2KZ7 A;  3V8U A;  3HW9 A;  3PRN A;  6PRN A;  1P4T A;  2ODJ A;  4FRT A;  3AA6 B;  2LHF A;  2KXP A;  4AYM C;  1QJ9 A;  2MHL A;  2LFU A;  1GFQ A;  1GFN A;  4GCS A;  4GF4 A;  1ZHW A;  4AYE C;  3POU A;  3QRA A;  3UAQ A;  3LK2 A;  3AAE B;  4O3W A;  5DL8 A;  2KXP B;  3AA6 A;  1E54 A;  3LK2 B;  2XE3 A;  4F4B A;  4D64 A;  3VE2 A;  4D5U A;  3UPG A;  4O4X A;  4AFK A;  4FES A;  2XG6 A;  3G7G A;  3POR A;  3T0S A;  3VZW X;  2Y0L A;  5AFU K;  2M07 A;  5AFU L;  4FZL A;  1GFP A;  2J1N A;  4GCQ A;  4LSF A;  3HOL A;  4RL9 A;  5DL5 A;  1IZN B;  2YPV A;  1PRN A;  2XE5 A;  1G90 A;  5DL6 A;  3AA7 B;  5D5D A;  3SZV A;  4RLB A;  3AA1 A;  3HWB A;  4AZL A;  4O4U A;  3LK4 1;  1ORM A;  4B61 A;  4FRX A;  5FVN A;  3T24 A;  2Y7S A;  2Y0H A;  3C5O A;  3AA0 A;  2POR A;  2QTK A;  4E1T A;  4JCH A;  3SYS A;  3VZU X;  2ZFG A;  2KC0 A;  1ZHT A;  2N2M A;  4LSI A;  3DA3 A;  3POX A;  3QRC A;  3VY9 X;  1OSM A;  4AKR B;  3VE1 A;  3PQS A;  2XTQ A;  2F1V A;  1HXT A;  5T5F A;  4FSP A;  3TZG A;  4AKR A;  2K4T A;  4O3Z A;  4FZN A;  4RJW A;  4PUX A;  4FT6 A;  4O49 A;  1HXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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