3SZDA

Crystal structure of pseudomonas aeruginosa occk2 (opdf)
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
392
structure length
368
Chain Sequence
b'GQGFLEDAKASLTARNFHLHRNFVGGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGRFDENRLIVSYPLSLL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords porin
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
total genus 96
structure length 368
sequence length 392
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szdA01
4GCQA 2K4TA 3T24A 1GFNA 4RJXA 1E54A 3SY7A 4KRAA 3POUA 4FRTA 4D65A 3FYXA 2FGRA 5DL8A 3POXA 2XE5A 2XE2A 2Y0HA 4LSEA 6PRNA 2PRNA 1GFPA 3UU2A 1OSMA 1MPFA 1GFQA 5PRNA 4KR8A 5DL6A 2OMFA 2PORA 3T0SA 4FOZA 4FRXA 3SZVA 1GFMA 2Y0LA 2ZFGA 3SYSA 1PHOA 3PORA 1HXUA 1OPFA 3PRNA 3VZTX 2XE1A 4KR4A 2QTKA 5FVNA 4GCPA 2J1NA 7PRNA 5DL5A 1HXTA 2O4VA 3VY9X 3HW9A 4LSFA 4C69X 3HWBA 3WI4A 4FSPA 1GFOA 2XE3A 3JTYA 4BUMX 3NSGA 2Y0KA 4D64A 3SYBA 3K19A 4FSOA 2ZLDA 4GCSA 2XG6A 3WI5A 3VY8X 3UPGA 1BT9A 1PRNA 4FT6A 3VZWX 3EMNX 3SZDA 2FGQX 3A2SX 1HXXA 5DL7A 4AUIA 3VZUX 8PRNA 4D5UA 2ODJA 3POQA 2Y2XA 4RJWA 4LSHA 5JDPA 4JFBA 4LSIA 1H6S1 4FMSA 3T20A 2J4UP 1BH3A 3O0EA 3SY9A
chains in the Genus database with same CATH superfamily
3LK3B 4JCHA 3HOEA 5G3AA 4GCQA 2N2LA 5EE2A 2R4OA 2K4TA 4O3WA 3T24A 1GFNA 1G90A 4F4BA 4N58A 4RJXA 1E54A 3WU2O 2W81C 4Z3TA 3A0BO 2KZ7A 4AKRB 3PGSA 4AYID 4O3YA 4FZLA 3SY7A 4KRAA 1S5LO 4XNKA 3POUA 4FRTA 4IL6O 2F1CX 3LK42 1MM4A 4D65A 4AYEC 3FYXA 4G76A 2FGRA 4N59A 5DL8A 4O3ZA 3POXA 4FZMA 3AAEA 3VE2A 1ZHWA 1T1LA 2KZ7B 2XE5A 4AYNA 2KXPA 2XE2A 2Y0HA 4LSEA 4C00A 4O49A 6PRNA 2JMMA 3AA0A 3KZIO 2PRNA 1GFPA 3A0HO 3AAEB 4K3BA 1OSMA 2R4LA 4FUVA 3UU2A 1MPFA 1GFQA 5PRNA 4KR8A 2KXPB 5D5DA 1Q9FA 5DL6A 2R4PA 2X27X 2M07A 5GV0A 3AA6A 3AA0B 3LK41 5GTIO 2IWWA 2OMFA 2GE4A 2PORA 3T0SA 3BRYA 3DWOX 4FOZA 4B61A 4FRXA 4FZNA 1IZNA 4AFKA 3SZVA 3PGUA 1GFMA 5E79O 4AYDC 2F1VA 1YS5A 2Y0LA 3AA6B 5B5EO 1QJ9A 2ZFGA 3QRCA 4O3XB 5T5FA 3SYSA 1PHOA 4UB6O 2ERVA 3PORA 4O4XA 1HXUA 4E1SA 1OPFA 3BS0A 3PRNA 3VZTX 2W80C 5KAFO 1IZNB 2XE1A 4KR4A 1ZHYA 2QTKA 2XTQA 3PQUA 2JQYA 3QRAA 4GCPA 5FVNA 1Q9GA 2KDYA 2YPVA 4UB8O 1P4TA 3NJTA 5G38A 2J1NA 4O4UA 2Y7SA 5TISO 3G7GA 7PRNA 3DA3A 5DL5A 1HXTA 2O4VA 3VY9X 3HW9A 3VE1A 4LSFA 4C69X 3HWBA 3V8UA 2R88A 3WI4A 4FSPA 2N2MA 3BRZA 1GFOA 4E1TA 2R8AA 2LHFA 2M06A 3DA4A 3JCUO 2XE3A 4FESA 2MNHA 4XNLA 5KAIO 3JTYA 1THQA 2WJQA 2XTRA 4BUMX 3AAAB 3GP6A 3NSGA 4PJ0O 4RLCA 2Y0KA 4AKMA 3DZMA 4D64A 4QQ1A 3SYBA 5IYUA 3K19A 3DWNA 2WJRA 1ZHXA 3PF1A 1QJ8A 4FQEA 1T16A 2AXTO 3HOLA 2ZLDA 4FSOA 4AZLA 4GCSA 2MHLA 2XG6A 4GF4A 3VY8X 3UAQA 3WI5A 1BT9A 3UPGA 5H2FO 5GTHO 4PR7A 1PRNA 2F1TA 3KVDD 4FT6A 4N75A 3VZWX 3EMNX 5B66O 2R4NA 5ADXL 2IWVA 3AA7A 4N74A 3RBHA 3SZDA 3LK2A 1ZHTA 2FGQX 3A2SX 1HXXA 3AAAA 5DL7A 4AUIA 1ZHZA 3VZUX 2K0LA 5AFUL 8PRNA 2X9KA 5G39A 4PUXA 4D5UA 2ODJA 3POQA 3AA7B 2WVPA 2YNKA 2Y2XA 2XMXA 3LK2B 4C4VA 3PGRA 4GHBA 4RL9A 4K3CA 4RJWA 4LSHA 3AA1A 5G26A 4CTDA 2KC0A 5JDPA 3LK3A 4G75A 5ADXK 4JFBA 4LSIA 2R89A 2LFUA 3C5OA 1H6S1 1QJPA 4FMSA 4AYMC 3T20A 3AA1B 3TZGA 4C4VB 3PQSA 1BXWA 1MM5A 4RLBA 4AKRA 2J4UP 1BH3A 3O0EA 3SY9A 4U9CA 1ORMA 5AFUK
chains in the Genus database with same CATH topology
3LK3B 4JCHA 3HOEA 4GCQA 2N2LA 5EE2A 2K4TA 4O3WA 3T24A 1GFNA 1G90A 4F4BA 4N58A 4RJXA 1E54A 4Z3TA 2W81C 2KZ7A 4AKRB 4AYID 4O3YA 4FZLA 3SY7A 4KRAA 4XNKA 3POUA 4FRTA 3LK42 1MM4A 4D65A 4AYEC 3FYXA 4G76A 2FGRA 4N59A 5DL8A 4O3ZA 3POXA 4FZMA 3AAEA 1ZHWA 2KZ7B 2XE5A 4AYNA 2KXPA 2XE2A 2Y0HA 4LSEA 4O49A 6PRNA 2JMMA 3AA0A 2PRNA 1GFPA 3AAEB 3UU2A 1OSMA 4FUVA 1MPFA 1GFQA 5PRNA 4KR8A 2KXPB 5D5DA 1Q9FA 5DL6A 2X27X 2M07A 5GV0A 3AA6A 3AA0B 3LK41 2OMFA 2GE4A 2PORA 3T0SA 4FOZA 4B61A 4FRXA 4FZNA 1IZNA 4AFKA 3SZVA 4AYDC 1GFMA 2F1VA 1YS5A 2Y0LA 3AA6B 1QJ9A 2ZFGA 3QRCA 4O3XB 5T5FA 3SYSA 1PHOA 2ERVA 3PORA 4O4XA 1HXUA 4E1SA 1OPFA 3PRNA 3VZTX 2W80C 1IZNB 2XE1A 4KR4A 1ZHYA 2QTKA 2XTQA 3PQUA 5FVNA 3QRAA 4GCPA 3VE2A 1Q9GA 2KDYA 2YPVA 1P4TA 2J1NA 4O4UA 2Y7SA 3G7GA 7PRNA 3DA3A 5DL5A 1HXTA 2O4VA 3VY9X 3HW9A 4LSFA 4C69X 3HWBA 3V8UA 3WI4A 4FSPA 2N2MA 1GFOA 2LHFA 2M06A 3DA4A 4FESA 2XE3A 4XNLA 2MNHA 3JTYA 1THQA 2XTRA 4BUMX 3AAAB 3GP6A 3NSGA 4AKMA 4RLCA 2Y0KA 4D64A 4QQ1A 3SYBA 5IYUA 3K19A 3VE1A 1ZHXA 1QJ8A 4FSOA 4AZLA 3HOLA 4E1TA 2ZLDA 4GCSA 2MHLA 2XG6A 4GF4A 3VY8X 3UAQA 3WI5A 1BT9A 3UPGA 1PRNA 2F1TA 3KVDD 4FT6A 5ADXL 3VZWX 3EMNX 3AA7A 3SZDA 3RBHA 3LK2A 1ZHTA 2FGQX 3A2SX 1HXXA 3AAAA 5DL7A 4AUIA 1ZHZA 3VZUX 2K0LA 5AFUL 8PRNA 4PUXA 4D5UA 2ODJA 3POQA 3AA7B 2YNKA 2Y2XA 2XMXA 3LK2B 4GHBA 4RL9A 4RJWA 4LSHA 3AA1A 5G26A 2KC0A 5JDPA 3LK3A 4G75A 5ADXK 4JFBA 4LSIA 2LFUA 3C5OA 1H6S1 1QJPA 4FMSA 4AYMC 3T20A 3AA1B 3TZGA 3PQSA 1BXWA 1MM5A 4RLBA 4AKRA 2J4UP 1BH3A 3O0EA 3SY9A 4U9CA 1ORMA 5AFUK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GCQ A;  2K4T A;  3T24 A;  1GFN A;  4RJX A;  1E54 A;  3SY7 A;  4KRA A;  3POU A;  4FRT A;  4D65 A;  3FYX A;  2FGR A;  5DL8 A;  3POX A;  2XE5 A;  2XE2 A;  2Y0H A;  4LSE A;  6PRN A;  2PRN A;  1GFP A;  3UU2 A;  1OSM A;  1MPF A;  1GFQ A;  5PRN A;  4KR8 A;  5DL6 A;  2OMF A;  2POR A;  3T0S A;  4FOZ A;  4FRX A;  3SZV A;  1GFM A;  2Y0L A;  2ZFG A;  3SYS A;  1PHO A;  3POR A;  1HXU A;  1OPF A;  3PRN A;  3VZT X;  2XE1 A;  4KR4 A;  2QTK A;  5FVN A;  4GCP A;  2J1N A;  7PRN A;  5DL5 A;  1HXT A;  2O4V A;  3VY9 X;  3HW9 A;  4LSF A;  4C69 X;  3HWB A;  3WI4 A;  4FSP A;  1GFO A;  2XE3 A;  3JTY A;  4BUM X;  3NSG A;  2Y0K A;  4D64 A;  3SYB A;  3K19 A;  4FSO A;  2ZLD A;  4GCS A;  2XG6 A;  3WI5 A;  3VY8 X;  3UPG A;  1BT9 A;  1PRN A;  4FT6 A;  3VZW X;  3EMN X;  3SZD A;  2FGQ X;  3A2S X;  1HXX A;  5DL7 A;  4AUI A;  3VZU X;  8PRN A;  4D5U A;  2ODJ A;  3POQ A;  2Y2X A;  4RJW A;  4LSH A;  5JDP A;  4JFB A;  4LSI A;  1H6S 1;  4FMS A;  3T20 A;  2J4U P;  1BH3 A;  3O0E A;  3SY9 A; 
#chains in the Genus database with same CATH topology
 3LK3 B;  4JCH A;  3HOE A;  5G3A A;  4GCQ A;  2N2L A;  5EE2 A;  2R4O A;  2K4T A;  4O3W A;  3T24 A;  1GFN A;  1G90 A;  4F4B A;  4N58 A;  4RJX A;  1E54 A;  3WU2 O;  2W81 C;  4Z3T A;  3A0B O;  2KZ7 A;  4AKR B;  3PGS A;  4AYI D;  4O3Y A;  4FZL A;  3SY7 A;  4KRA A;  1S5L O;  4XNK A;  3POU A;  4FRT A;  4IL6 O;  2F1C X;  3LK4 2;  1MM4 A;  4D65 A;  4AYE C;  3FYX A;  4G76 A;  2FGR A;  4N59 A;  5DL8 A;  4O3Z A;  3POX A;  4FZM A;  3AAE A;  3VE2 A;  1ZHW A;  1T1L A;  2KZ7 B;  2XE5 A;  4AYN A;  2KXP A;  2XE2 A;  2Y0H A;  4LSE A;  4C00 A;  4O49 A;  6PRN A;  2JMM A;  3AA0 A;  3KZI O;  2PRN A;  1GFP A;  3A0H O;  3AAE B;  4K3B A;  1OSM A;  2R4L A;  4FUV A;  3UU2 A;  1MPF A;  1GFQ A;  5PRN A;  4KR8 A;  2KXP B;  5D5D A;  1Q9F A;  5DL6 A;  2R4P A;  2X27 X;  2M07 A;  5GV0 A;  3AA6 A;  3AA0 B;  3LK4 1;  5GTI O;  2IWW A;  2OMF A;  2GE4 A;  2POR A;  3T0S A;  3BRY A;  3DWO X;  4FOZ A;  4B61 A;  4FRX A;  4FZN A;  1IZN A;  4AFK A;  3SZV A;  3PGU A;  1GFM A;  5E79 O;  4AYD C;  2F1V A;  1YS5 A;  2Y0L A;  3AA6 B;  5B5E O;  1QJ9 A;  2ZFG A;  3QRC A;  4O3X B;  5T5F A;  3SYS A;  1PHO A;  4UB6 O;  2ERV A;  3POR A;  4O4X A;  1HXU A;  4E1S A;  1OPF A;  3BS0 A;  3PRN A;  3VZT X;  2W80 C;  5KAF O;  1IZN B;  2XE1 A;  4KR4 A;  1ZHY A;  2QTK A;  2XTQ A;  3PQU A;  2JQY A;  3QRA A;  4GCP A;  5FVN A;  1Q9G A;  2KDY A;  2YPV A;  4UB8 O;  1P4T A;  3NJT A;  5G38 A;  2J1N A;  4O4U A;  2Y7S A;  5TIS O;  3G7G A;  7PRN A;  3DA3 A;  5DL5 A;  1HXT A;  2O4V A;  3VY9 X;  3HW9 A;  3VE1 A;  4LSF A;  4C69 X;  3HWB A;  3V8U A;  2R88 A;  3WI4 A;  4FSP A;  2N2M A;  3BRZ A;  1GFO A;  4E1T A;  2R8A A;  2LHF A;  2M06 A;  3DA4 A;  3JCU O;  2XE3 A;  4FES A;  2MNH A;  4XNL A;  5KAI O;  3JTY A;  1THQ A;  2WJQ A;  2XTR A;  4BUM X;  3AAA B;  3GP6 A;  3NSG A;  4PJ0 O;  4RLC A;  2Y0K A;  4AKM A;  3DZM A;  4D64 A;  4QQ1 A;  3SYB A;  5IYU A;  3K19 A;  3DWN A;  2WJR A;  1ZHX A;  3PF1 A;  1QJ8 A;  4FQE A;  1T16 A;  2AXT O;  3HOL A;  2ZLD A;  4FSO A;  4AZL A;  4GCS A;  2MHL A;  2XG6 A;  4GF4 A;  3VY8 X;  3UAQ A;  3WI5 A;  1BT9 A;  3UPG A;  5H2F O;  5GTH O;  4PR7 A;  1PRN A;  2F1T A;  3KVD D;  4FT6 A;  4N75 A;  3VZW X;  3EMN X;  5B66 O;  2R4N A;  5ADX L;  2IWV A;  3AA7 A;  4N74 A;  3RBH A;  3SZD A;  3LK2 A;  1ZHT A;  2FGQ X;  3A2S X;  1HXX A;  3AAA A;  5DL7 A;  4AUI A;  1ZHZ A;  3VZU X;  2K0L A;  5AFU L;  8PRN A;  2X9K A;  5G39 A;  4PUX A;  4D5U A;  2ODJ A;  3POQ A;  3AA7 B;  2WVP A;  2YNK A;  2Y2X A;  2XMX A;  3LK2 B;  4C4V A;  3PGR A;  4GHB A;  4RL9 A;  4K3C A;  4RJW A;  4LSH A;  3AA1 A;  5G26 A;  4CTD A;  2KC0 A;  5JDP A;  3LK3 A;  4G75 A;  5ADX K;  4JFB A;  4LSI A;  2R89 A;  2LFU A;  3C5O A;  1H6S 1;  1QJP A;  4FMS A;  4AYM C;  3T20 A;  3AA1 B;  3TZG A;  4C4V B;  3PQS A;  1BXW A;  1MM5 A;  4RLB A;  4AKR A;  2J4U P;  1BH3 A;  3O0E A;  3SY9 A;  4U9C A;  1ORM A;  5AFU K; 
#chains in the Genus database with same CATH homology
 3LK3 B;  4JCH A;  3HOE A;  4GCQ A;  2N2L A;  5EE2 A;  2K4T A;  4O3W A;  3T24 A;  1GFN A;  1G90 A;  4F4B A;  4N58 A;  4RJX A;  1E54 A;  4Z3T A;  2W81 C;  2KZ7 A;  4AKR B;  4AYI D;  4O3Y A;  4FZL A;  3SY7 A;  4KRA A;  4XNK A;  3POU A;  4FRT A;  3LK4 2;  1MM4 A;  4D65 A;  4AYE C;  3FYX A;  4G76 A;  2FGR A;  4N59 A;  5DL8 A;  4O3Z A;  3POX A;  4FZM A;  3AAE A;  1ZHW A;  2KZ7 B;  2XE5 A;  4AYN A;  2KXP A;  2XE2 A;  2Y0H A;  4LSE A;  4O49 A;  6PRN A;  2JMM A;  3AA0 A;  2PRN A;  1GFP A;  3AAE B;  3UU2 A;  1OSM A;  4FUV A;  1MPF A;  1GFQ A;  5PRN A;  4KR8 A;  2KXP B;  5D5D A;  1Q9F A;  5DL6 A;  2X27 X;  2M07 A;  5GV0 A;  3AA6 A;  3AA0 B;  3LK4 1;  2OMF A;  2GE4 A;  2POR A;  3T0S A;  4FOZ A;  4B61 A;  4FRX A;  4FZN A;  1IZN A;  4AFK A;  3SZV A;  4AYD C;  1GFM A;  2F1V A;  1YS5 A;  2Y0L A;  3AA6 B;  1QJ9 A;  2ZFG A;  3QRC A;  4O3X B;  5T5F A;  3SYS A;  1PHO A;  2ERV A;  3POR A;  4O4X A;  1HXU A;  4E1S A;  1OPF A;  3PRN A;  3VZT X;  2W80 C;  1IZN B;  2XE1 A;  4KR4 A;  1ZHY A;  2QTK A;  2XTQ A;  3PQU A;  5FVN A;  3QRA A;  4GCP A;  3VE2 A;  1Q9G A;  2KDY A;  2YPV A;  1P4T A;  2J1N A;  4O4U A;  2Y7S A;  3G7G A;  7PRN A;  3DA3 A;  5DL5 A;  1HXT A;  2O4V A;  3VY9 X;  3HW9 A;  4LSF A;  4C69 X;  3HWB A;  3V8U A;  3WI4 A;  4FSP A;  2N2M A;  1GFO A;  2LHF A;  2M06 A;  3DA4 A;  4FES A;  2XE3 A;  4XNL A;  2MNH A;  3JTY A;  1THQ A;  2XTR A;  4BUM X;  3AAA B;  3GP6 A;  3NSG A;  4AKM A;  4RLC A;  2Y0K A;  4D64 A;  4QQ1 A;  3SYB A;  5IYU A;  3K19 A;  3VE1 A;  1ZHX A;  1QJ8 A;  4FSO A;  4AZL A;  3HOL A;  4E1T A;  2ZLD A;  4GCS A;  2MHL A;  2XG6 A;  4GF4 A;  3VY8 X;  3UAQ A;  3WI5 A;  1BT9 A;  3UPG A;  1PRN A;  2F1T A;  3KVD D;  4FT6 A;  5ADX L;  3VZW X;  3EMN X;  3AA7 A;  3SZD A;  3RBH A;  3LK2 A;  1ZHT A;  2FGQ X;  3A2S X;  1HXX A;  3AAA A;  5DL7 A;  4AUI A;  1ZHZ A;  3VZU X;  2K0L A;  5AFU L;  8PRN A;  4PUX A;  4D5U A;  2ODJ A;  3POQ A;  3AA7 B;  2YNK A;  2Y2X A;  2XMX A;  3LK2 B;  4GHB A;  4RL9 A;  4RJW A;  4LSH A;  3AA1 A;  5G26 A;  2KC0 A;  5JDP A;  3LK3 A;  4G75 A;  5ADX K;  4JFB A;  4LSI A;  2LFU A;  3C5O A;  1H6S 1;  1QJP A;  4FMS A;  4AYM C;  3T20 A;  3AA1 B;  3TZG A;  3PQS A;  1BXW A;  1MM5 A;  4RLB A;  4AKR A;  2J4U P;  1BH3 A;  3O0E A;  3SY9 A;  4U9C A;  1ORM A;  5AFU K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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