3SZDA

Crystal structure of pseudomonas aeruginosa occk2 (opdf)
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
392
structure length
368
Chain Sequence
GQGFLEDAKASLTARNFHLHRNFVGGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGRFDENRLIVSYPLSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords porin
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 96
structure length 368
sequence length 392
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szdA01
2PORA 2Y2XA 2ZLDA 3PORA 4GCSA 3POXA 4RJXA 5PRNA 3VY8X 4GCQA 3SYSA 2ODJA 3VZUX 3POQA 4BUMX 1OPFA 1HXXA 2Y0HA 2OMFA 4FSPA 4LSEA 1BH3A 3PRNA 2J1NA 3SYBA 1OSMA 3UU2A 3NSGA 5DL8A 3A2SX 4KRAA 2FGQX 2Y0LA 4AUIA 1GFMA 2J4UP 2FGRA 3FYXA 5FVNA 1E54A 2K4TA 4D65A 1HXUA 3O0EA 5JDPA 2XE3A 1HXTA 1GFPA 4LSFA 1MPFA 2QTKA 2PRNA 3SY7A 3WI5A 2XG6A 7PRNA 1GFNA 4D5UA 3VZTX 3SZVA 6PRNA 3T20A 2ZFGA 4FRXA 3VZWX 1GFOA 3SY9A 2Y0KA 3HW9A 2XE2A 3T0SA 3WI4A 4LSIA 4FOZA 2XE5A 4KR8A 3T24A 1H6S1 5DL5A 4FRTA 3JTYA 5DL6A 4D64A 3POUA 3SZDA 5DL7A 4KR4A 1GFQA 1PRNA 8PRNA 4FSOA 1BT9A 3EMNX 4FMSA 3VY9X 4LSHA 3HWBA 4FT6A 4RJWA 1PHOA 3K19A 4JFBA 2XE1A 3UPGA 4C69X 4GCPA 2O4VA
chains in the Genus database with same CATH superfamily
2PORA 4QQ1A 2R4OA 3AA7B 5GTHO 4GHBA 3RBHA 2K0LA 4FZLA 1ZHYA 4RL9A 2Y2XA 2W80C 2ZLDA 1QJPA 4C4VA 3PORA 4GCSA 3POXA 4N59A 2JQYA 2MNHA 2R8AA 3C5OA 1QJ9A 4RJXA 3HOEA 5PRNA 3V8UA 4K3BA 3VY8X 2IWWA 4AFKA 1MM5A 2F1VA 2MHLA 3DWNA 4FZMA 4GCQA 4U9CA 2AXTO 3SYSA 2ODJA 4B61A 4CTDA 2GE4A 2M06A 3VZUX 3POQA 4AYID 5GV0A 5JDPA 4BUMX 1OPFA 1HXXA 3AA7A 2Y0HA 5G3AA 2OMFA 1G90A 4FSPA 4AKMA 5H2FO 4N75A 4E1TA 4PJ0O 4LSEA 3KVDD 1BH3A 3PQUA 3PRNA 2J1NA 3SYBA 4F4BA 5D5DA 5AFUL 1OSMA 1T16A 2YNKA 4FZNA 3UU2A 3NSGA 5DL8A 3A2SX 4KRAA 2FGQX 4AKRB 4Z3TA 4G76A 2Y0LA 2XTRA 4IL6O 5AFUK 4AUIA 4C00A 1GFMA 2WVPA 3WU2O 3DA4A 1QJ8A 2J4UP 3TZGA 3DWOX 2FGRA 3FYXA 4O3ZA 2R4LA 5FVNA 1E54A 2K4TA 3A0BO 4D65A 1HXUA 1P4TA 3O0EA 2XE3A 1ZHXA 1HXTA 2KZ7A 1GFPA 4O3YA 3JCUO 4LSFA 5G39A 1MPFA 2QTKA 2YPVA 5T5FA 2PRNA 4PUXA 2XMXA 3SY7A 4AYNA 2WJRA 3WI5A 2XG6A 2ERVA 5KAIO 3GP6A 1Q9FA 3G7GA 4N58A 4AKRA 7PRNA 5G26A 3PGRA 4GF4A 2R4PA 4K3CA 2KZ7B 1GFNA 1YS5A 3VE2A 1ZHWA 4D5UA 3QRCA 2W81C 3A0HO 5TISO 3VZTX 2KC0A 5IYUA 3PGSA 4O4XA 5ADXK 4FESA 2Y7SA 3SZVA 1ZHTA 4FQEA 1THQA 2M07A 6PRNA 3PF1A 3BS0A 2R4NA 1IZNB 2ZFGA 4RLCA 4O3XB 4FRXA 4AYDC 3T20A 5KAFO 2F1CX 3VZWX 1ZHZA 3AAAA 1GFOA 3SY9A 2KDYA 2X27X 4UB6O 2Y0KA 4O3WA 2WJQA 3HW9A 3LK41 5GTIO 2XE2A 1MM4A 3LK2B 3T0SA 3AA1B 3WI4A 4LSIA 4FOZA 1S5LO 2XE5A 4KR8A 3T24A 5B66O 2JMMA 3LK3B 1Q9GA 2XTQA 4PR7A 3VE1A 2N2LA 1BXWA 1H6S1 3AAAB 4FRTA 5DL5A 3JTYA 4O49A 5DL6A 3UAQA 2X9KA 3DZMA 5ADXL 3AA0B 3BRYA 4D64A 4FUVA 1IZNA 2IWVA 3POUA 3BRZA 3AAEB 4AYMC 3QRAA 3SZDA 5DL7A 4KR4A 2KXPB 1GFQA 2R88A 1PRNA 8PRNA 4N74A 3PGUA 3HOLA 4FSOA 1BT9A 3EMNX 3LK2A 3AA1A 4FMSA 2N2MA 4LSHA 3VY9X 3PQSA 4JCHA 5G38A 5EE2A 1T1LA 3HWBA 3LK3A 3AA6A 5E79O 4AYEC 4FT6A 4RJWA 4XNLA 2LHFA 4C4VB 1PHOA 3K19A 3KZIO 2F1TA 3AA0A 4JFBA 4AZLA 2XE1A 4RLBA 4XNKA 5B5EO 3UPGA 3AAEA 4UB8O 1ORMA 4O4UA 4C69X 2KXPA 4GCPA 2LFUA 3NJTA 3AA6B 4G75A 3DA3A 2O4VA 2R89A 3LK42 4E1SA
chains in the Genus database with same CATH topology
2PORA 4QQ1A 3AA7B 4GHBA 3RBHA 2K0LA 4FZLA 1ZHYA 4RL9A 2Y2XA 2W80C 2ZLDA 1QJPA 3PORA 4GCSA 3POXA 4N59A 2MNHA 3C5OA 1QJ9A 4RJXA 3HOEA 5PRNA 3V8UA 3VY8X 4AFKA 1MM5A 2F1VA 2MHLA 4FZMA 4GCQA 4U9CA 3SYSA 4B61A 2ODJA 2GE4A 2M06A 3VZUX 3POQA 4AYID 5GV0A 4BUMX 1OPFA 1HXXA 3AA7A 2Y0HA 2OMFA 1G90A 4FSPA 4AKMA 4E1TA 4LSEA 3KVDD 1BH3A 3PQUA 3PRNA 2J1NA 3SYBA 4F4BA 5D5DA 5AFUL 1OSMA 2YNKA 4FZNA 3UU2A 3NSGA 5DL8A 3A2SX 4KRAA 2FGQX 4AKRB 4Z3TA 4G76A 2Y0LA 2XTRA 5AFUK 4AUIA 1GFMA 2J4UP 3DA4A 1QJ8A 3TZGA 2FGRA 3FYXA 4O3ZA 5FVNA 1E54A 2K4TA 4D65A 1HXUA 1P4TA 3O0EA 2XE3A 1ZHXA 1HXTA 2KZ7A 1GFPA 4O3YA 4LSFA 5JDPA 1MPFA 2QTKA 2YPVA 5T5FA 2PRNA 4PUXA 2XMXA 3SY7A 4AYNA 3WI5A 2XG6A 2ERVA 3GP6A 1Q9FA 3G7GA 4N58A 4AKRA 7PRNA 5G26A 4GF4A 2KZ7B 1GFNA 1YS5A 3VE2A 1ZHWA 4D5UA 3QRCA 2W81C 3VZTX 2KC0A 5IYUA 4O4XA 5ADXK 4FESA 2Y7SA 3SZVA 1ZHTA 1THQA 2M07A 6PRNA 3T20A 1IZNB 2ZFGA 4RLCA 4O3XB 4FRXA 4AYDC 3VZWX 1ZHZA 3AAAA 1GFOA 3SY9A 2KDYA 2X27X 2Y0KA 4O3WA 3HW9A 3LK41 2XE2A 1MM4A 3LK2B 3T0SA 3AA1B 3WI4A 4LSIA 4FOZA 2XE5A 4KR8A 3T24A 2JMMA 3LK3B 1Q9GA 2XTQA 3VE1A 2N2LA 1BXWA 1H6S1 3AAAB 4FRTA 5DL5A 3JTYA 4O49A 5DL6A 3UAQA 5ADXL 3AA0B 4D64A 4FUVA 1IZNA 3POUA 3AAEB 4AYMC 3QRAA 3SZDA 5DL7A 4KR4A 2KXPB 1GFQA 1PRNA 8PRNA 3HOLA 4FSOA 1BT9A 3EMNX 3LK2A 3AA1A 4FMSA 2N2MA 4LSHA 3VY9X 3PQSA 4JCHA 5EE2A 3HWBA 3LK3A 3AA6A 4AYEC 4FT6A 4RJWA 4XNLA 2LHFA 1PHOA 3K19A 4JFBA 2F1TA 3AA0A 4AZLA 2XE1A 4RLBA 4XNKA 3UPGA 3AAEA 1ORMA 4O4UA 4C69X 2KXPA 4GCPA 2LFUA 4G75A 3AA6B 3DA3A 2O4VA 3LK42 4E1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2POR A;  2Y2X A;  2ZLD A;  3POR A;  4GCS A;  3POX A;  4RJX A;  5PRN A;  3VY8 X;  4GCQ A;  3SYS A;  2ODJ A;  3VZU X;  3POQ A;  4BUM X;  1OPF A;  1HXX A;  2Y0H A;  2OMF A;  4FSP A;  4LSE A;  1BH3 A;  3PRN A;  2J1N A;  3SYB A;  1OSM A;  3UU2 A;  3NSG A;  5DL8 A;  3A2S X;  4KRA A;  2FGQ X;  2Y0L A;  4AUI A;  1GFM A;  2J4U P;  2FGR A;  3FYX A;  5FVN A;  1E54 A;  2K4T A;  4D65 A;  1HXU A;  3O0E A;  5JDP A;  2XE3 A;  1HXT A;  1GFP A;  4LSF A;  1MPF A;  2QTK A;  2PRN A;  3SY7 A;  3WI5 A;  2XG6 A;  7PRN A;  1GFN A;  4D5U A;  3VZT X;  3SZV A;  6PRN A;  3T20 A;  2ZFG A;  4FRX A;  3VZW X;  1GFO A;  3SY9 A;  2Y0K A;  3HW9 A;  2XE2 A;  3T0S A;  3WI4 A;  4LSI A;  4FOZ A;  2XE5 A;  4KR8 A;  3T24 A;  1H6S 1;  5DL5 A;  4FRT A;  3JTY A;  5DL6 A;  4D64 A;  3POU A;  3SZD A;  5DL7 A;  4KR4 A;  1GFQ A;  1PRN A;  8PRN A;  4FSO A;  1BT9 A;  3EMN X;  4FMS A;  3VY9 X;  4LSH A;  3HWB A;  4FT6 A;  4RJW A;  1PHO A;  3K19 A;  4JFB A;  2XE1 A;  3UPG A;  4C69 X;  4GCP A;  2O4V A; 
#chains in the Genus database with same CATH topology
 2POR A;  4QQ1 A;  2R4O A;  3AA7 B;  5GTH O;  4GHB A;  3RBH A;  2K0L A;  4FZL A;  1ZHY A;  4RL9 A;  2Y2X A;  2W80 C;  2ZLD A;  1QJP A;  4C4V A;  3POR A;  4GCS A;  3POX A;  4N59 A;  2JQY A;  2MNH A;  2R8A A;  3C5O A;  1QJ9 A;  4RJX A;  3HOE A;  5PRN A;  3V8U A;  4K3B A;  3VY8 X;  2IWW A;  4AFK A;  1MM5 A;  2F1V A;  2MHL A;  3DWN A;  4FZM A;  4GCQ A;  4U9C A;  2AXT O;  3SYS A;  2ODJ A;  4B61 A;  4CTD A;  2GE4 A;  2M06 A;  3VZU X;  3POQ A;  4AYI D;  5GV0 A;  5JDP A;  4BUM X;  1OPF A;  1HXX A;  3AA7 A;  2Y0H A;  5G3A A;  2OMF A;  1G90 A;  4FSP A;  4AKM A;  5H2F O;  4N75 A;  4E1T A;  4PJ0 O;  4LSE A;  3KVD D;  1BH3 A;  3PQU A;  3PRN A;  2J1N A;  3SYB A;  4F4B A;  5D5D A;  5AFU L;  1OSM A;  1T16 A;  2YNK A;  4FZN A;  3UU2 A;  3NSG A;  5DL8 A;  3A2S X;  4KRA A;  2FGQ X;  4AKR B;  4Z3T A;  4G76 A;  2Y0L A;  2XTR A;  4IL6 O;  5AFU K;  4AUI A;  4C00 A;  1GFM A;  2WVP A;  3WU2 O;  3DA4 A;  1QJ8 A;  2J4U P;  3TZG A;  3DWO X;  2FGR A;  3FYX A;  4O3Z A;  2R4L A;  5FVN A;  1E54 A;  2K4T A;  3A0B O;  4D65 A;  1HXU A;  1P4T A;  3O0E A;  2XE3 A;  1ZHX A;  1HXT A;  2KZ7 A;  1GFP A;  4O3Y A;  3JCU O;  4LSF A;  5G39 A;  1MPF A;  2QTK A;  2YPV A;  5T5F A;  2PRN A;  4PUX A;  2XMX A;  3SY7 A;  4AYN A;  2WJR A;  3WI5 A;  2XG6 A;  2ERV A;  5KAI O;  3GP6 A;  1Q9F A;  3G7G A;  4N58 A;  4AKR A;  7PRN A;  5G26 A;  3PGR A;  4GF4 A;  2R4P A;  4K3C A;  2KZ7 B;  1GFN A;  1YS5 A;  3VE2 A;  1ZHW A;  4D5U A;  3QRC A;  2W81 C;  3A0H O;  5TIS O;  3VZT X;  2KC0 A;  5IYU A;  3PGS A;  4O4X A;  5ADX K;  4FES A;  2Y7S A;  3SZV A;  1ZHT A;  4FQE A;  1THQ A;  2M07 A;  6PRN A;  3PF1 A;  3BS0 A;  2R4N A;  1IZN B;  2ZFG A;  4RLC A;  4O3X B;  4FRX A;  4AYD C;  3T20 A;  5KAF O;  2F1C X;  3VZW X;  1ZHZ A;  3AAA A;  1GFO A;  3SY9 A;  2KDY A;  2X27 X;  4UB6 O;  2Y0K A;  4O3W A;  2WJQ A;  3HW9 A;  3LK4 1;  5GTI O;  2XE2 A;  1MM4 A;  3LK2 B;  3T0S A;  3AA1 B;  3WI4 A;  4LSI A;  4FOZ A;  1S5L O;  2XE5 A;  4KR8 A;  3T24 A;  5B66 O;  2JMM A;  3LK3 B;  1Q9G A;  2XTQ A;  4PR7 A;  3VE1 A;  2N2L A;  1BXW A;  1H6S 1;  3AAA B;  4FRT A;  5DL5 A;  3JTY A;  4O49 A;  5DL6 A;  3UAQ A;  2X9K A;  3DZM A;  5ADX L;  3AA0 B;  3BRY A;  4D64 A;  4FUV A;  1IZN A;  2IWV A;  3POU A;  3BRZ A;  3AAE B;  4AYM C;  3QRA A;  3SZD A;  5DL7 A;  4KR4 A;  2KXP B;  1GFQ A;  2R88 A;  1PRN A;  8PRN A;  4N74 A;  3PGU A;  3HOL A;  4FSO A;  1BT9 A;  3EMN X;  3LK2 A;  3AA1 A;  4FMS A;  2N2M A;  4LSH A;  3VY9 X;  3PQS A;  4JCH A;  5G38 A;  5EE2 A;  1T1L A;  3HWB A;  3LK3 A;  3AA6 A;  5E79 O;  4AYE C;  4FT6 A;  4RJW A;  4XNL A;  2LHF A;  4C4V B;  1PHO A;  3K19 A;  3KZI O;  2F1T A;  3AA0 A;  4JFB A;  4AZL A;  2XE1 A;  4RLB A;  4XNK A;  5B5E O;  3UPG A;  3AAE A;  4UB8 O;  1ORM A;  4O4U A;  4C69 X;  2KXP A;  4GCP A;  2LFU A;  3NJT A;  3AA6 B;  4G75 A;  3DA3 A;  2O4V A;  2R89 A;  3LK4 2;  4E1S A; 
#chains in the Genus database with same CATH homology
 2POR A;  4QQ1 A;  3AA7 B;  4GHB A;  3RBH A;  2K0L A;  4FZL A;  1ZHY A;  4RL9 A;  2Y2X A;  2W80 C;  2ZLD A;  1QJP A;  3POR A;  4GCS A;  3POX A;  4N59 A;  2MNH A;  3C5O A;  1QJ9 A;  4RJX A;  3HOE A;  5PRN A;  3V8U A;  3VY8 X;  4AFK A;  1MM5 A;  2F1V A;  2MHL A;  4FZM A;  4GCQ A;  4U9C A;  3SYS A;  4B61 A;  2ODJ A;  2GE4 A;  2M06 A;  3VZU X;  3POQ A;  4AYI D;  5GV0 A;  4BUM X;  1OPF A;  1HXX A;  3AA7 A;  2Y0H A;  2OMF A;  1G90 A;  4FSP A;  4AKM A;  4E1T A;  4LSE A;  3KVD D;  1BH3 A;  3PQU A;  3PRN A;  2J1N A;  3SYB A;  4F4B A;  5D5D A;  5AFU L;  1OSM A;  2YNK A;  4FZN A;  3UU2 A;  3NSG A;  5DL8 A;  3A2S X;  4KRA A;  2FGQ X;  4AKR B;  4Z3T A;  4G76 A;  2Y0L A;  2XTR A;  5AFU K;  4AUI A;  1GFM A;  2J4U P;  3DA4 A;  1QJ8 A;  3TZG A;  2FGR A;  3FYX A;  4O3Z A;  5FVN A;  1E54 A;  2K4T A;  4D65 A;  1HXU A;  1P4T A;  3O0E A;  2XE3 A;  1ZHX A;  1HXT A;  2KZ7 A;  1GFP A;  4O3Y A;  4LSF A;  5JDP A;  1MPF A;  2QTK A;  2YPV A;  5T5F A;  2PRN A;  4PUX A;  2XMX A;  3SY7 A;  4AYN A;  3WI5 A;  2XG6 A;  2ERV A;  3GP6 A;  1Q9F A;  3G7G A;  4N58 A;  4AKR A;  7PRN A;  5G26 A;  4GF4 A;  2KZ7 B;  1GFN A;  1YS5 A;  3VE2 A;  1ZHW A;  4D5U A;  3QRC A;  2W81 C;  3VZT X;  2KC0 A;  5IYU A;  4O4X A;  5ADX K;  4FES A;  2Y7S A;  3SZV A;  1ZHT A;  1THQ A;  2M07 A;  6PRN A;  3T20 A;  1IZN B;  2ZFG A;  4RLC A;  4O3X B;  4FRX A;  4AYD C;  3VZW X;  1ZHZ A;  3AAA A;  1GFO A;  3SY9 A;  2KDY A;  2X27 X;  2Y0K A;  4O3W A;  3HW9 A;  3LK4 1;  2XE2 A;  1MM4 A;  3LK2 B;  3T0S A;  3AA1 B;  3WI4 A;  4LSI A;  4FOZ A;  2XE5 A;  4KR8 A;  3T24 A;  2JMM A;  3LK3 B;  1Q9G A;  2XTQ A;  3VE1 A;  2N2L A;  1BXW A;  1H6S 1;  3AAA B;  4FRT A;  5DL5 A;  3JTY A;  4O49 A;  5DL6 A;  3UAQ A;  5ADX L;  3AA0 B;  4D64 A;  4FUV A;  1IZN A;  3POU A;  3AAE B;  4AYM C;  3QRA A;  3SZD A;  5DL7 A;  4KR4 A;  2KXP B;  1GFQ A;  1PRN A;  8PRN A;  3HOL A;  4FSO A;  1BT9 A;  3EMN X;  3LK2 A;  3AA1 A;  4FMS A;  2N2M A;  4LSH A;  3VY9 X;  3PQS A;  4JCH A;  5EE2 A;  3HWB A;  3LK3 A;  3AA6 A;  4AYE C;  4FT6 A;  4RJW A;  4XNL A;  2LHF A;  1PHO A;  3K19 A;  4JFB A;  2F1T A;  3AA0 A;  4AZL A;  2XE1 A;  4RLB A;  4XNK A;  3UPG A;  3AAE A;  1ORM A;  4O4U A;  4C69 X;  2KXP A;  4GCP A;  2LFU A;  4G75 A;  3AA6 B;  3DA3 A;  2O4V A;  3LK4 2;  4E1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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