3T20A

Crystal structure of pseudomonas aeruginosa occk5 (opdh)
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
391
structure length
362
Chain Sequence
AGFLEDSKASLETRNFYMNRDFRKREEWAQGFILNLQSGYTQGTVGFGLDAMGMLGVKLDSPDTYSKLGLTAKVKVSQSELKVGTLIPKLPSVQPNNGRIFPQIFEGALLTSKEIKDLGFTAGRLEKTKIDSEDLALNDKNGRFAGVSADHFDLGGLDYKLTDQLTASYHYSNLQDVYRQHFVGLLHSWPIGPGELTSDLRFARSTDSGSAKAGGIDNKSLNGMFTYSLGNHAFGAAWQRMNGDDAFPYLEGSNPYLVNFVQVNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRYVKGDNVELAGQGEGREWERNTELQYVFQSGALKNLGIRWRNATFRSNFTRDIDENRLIVSYTLPIW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Cis-aconitate porin OpdH
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 95
structure length 362
sequence length 391
ec nomenclature
pdb deposition date 2011-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3t20A01
2PORA 1BT9A 4LSEA 2XE2A 4FT6A 2FGQX 4GCQA 5JDPA 4LSHA 3A2SX 1GFQA 3WI5A 3VZWX 2QTKA 3T0SA 5DL8A 4LSFA 3SYBA 4D65A 5PRNA 3VY8X 2Y0HA 1E54A 3PORA 3VZTX 2PRNA 2J1NA 3SZVA 4JFBA 1GFOA 1OPFA 4FOZA 3T20A 3HW9A 1GFMA 4RJWA 5DL6A 2O4VA 3JTYA 3NSGA 3SY7A 7PRNA 1PRNA 4GCSA 1PHOA 2ZLDA 4LSIA 2XE1A 2ODJA 4GCPA 3SYSA 2XE3A 5DL7A 4KR4A 2ZFGA 2Y0KA 3UPGA 3VZUX 4C69X 3WI4A 3SZDA 1GFNA 3VY9X 3UU2A 1HXUA 2FGRA 4D64A 4BUMX 3SY9A 1OSMA 3FYXA 4FSOA 2XE5A 1HXXA 2Y0LA 4KR8A 4FMSA 2XG6A 6PRNA 2K4TA 3POXA 4AUIA 5DL5A 8PRNA 2J4UP 1GFPA 5FVNA 3O0EA 3POQA 4KRAA 3PRNA 2Y2XA 3POUA 3HWBA 4RJXA 4FSPA 1HXTA 1MPFA 4D5UA 3EMNX 3K19A 1H6S1 4FRXA 4FRTA 2OMFA 1BH3A 3T24A
chains in the Genus database with same CATH superfamily
2AXTO 1BT9A 2PORA 3AAEA 4GHBA 4K3CA 2LHFA 2XE2A 4LSEA 5B66O 4PUXA 4FT6A 3LK41 2WVPA 3NJTA 2FGQX 5G38A 2W80C 4AYID 4GCQA 5IYUA 5JDPA 3PGSA 4LSHA 3DWOX 3A0BO 4G75A 3PQSA 3A2SX 1BXWA 4F4BA 5AFUK 4G76A 1G90A 3G7GA 1GFQA 2Y7SA 3AA6B 3KVDD 4U9CA 2F1TA 2JQYA 2KC0A 2QTKA 3VZWX 4C00A 3T20A 2KXPA 2W81C 3T0SA 5DL8A 1T1LA 2YPVA 4LSFA 3SYBA 3PGRA 4AKMA 4D65A 5H2FO 4RLCA 5G26A 3V8UA 5PRNA 3WU2O 3VY8X 3RBHA 4AYMC 4FUVA 5KAIO 1T16A 3GP6A 5GTIO 2WJQA 2Y0HA 1ZHYA 3AAEB 1E54A 3PORA 1IZNA 3VZTX 2M06A 2PRNA 3PF1A 2F1CX 2J1NA 2XTQA 3SZVA 4JFBA 1GFOA 1QJ9A 5ADXL 3QRCA 3QRAA 2YNKA 7PRNA 4B61A 4Z3TA 2N2MA 2F1VA 4N75A 1OPFA 3AAAA 4FOZA 2WJRA 2XTRA 1GFMA 3HW9A 3LK42 4N58A 4RJWA 3C5OA 1YS5A 3PQUA 4JCHA 5DL6A 4AYNA 2O4VA 3LK3A 2X27X 3JTYA 3LK2B 4AKRA 3NSGA 3AA7A 4FESA 1PRNA 4GCSA 5T5FA 2N2LA 1PHOA 2R4LA 2ZLDA 2KXPB 3UAQA 3DA3A 4QQ1A 2ERVA 5KAFO 4LSIA 3AA0A 2XE1A 2ODJA 4GCPA 4O4XA 3SYSA 5ADXK 2XE3A 4N74A 5DL7A 4KR4A 3AA1B 2ZFGA 4AYDC 2Y0KA 3BRZA 3PGUA 4GF4A 1ZHZA 5B5EO 5D5DA 3UPGA 4O3YA 4RL9A 3VZUX 4C69X 3WI4A 2X9KA 4FQEA 4FZMA 4E1SA 1S5LO 2IWVA 1GFNA 3DWNA 2XMXA 3DZMA 3JCUO 4FZLA 3SZDA 4AZLA 3VE2A 2M07A 2K0LA 4PR7A 3VY9X 3UU2A 1HXUA 1Q9GA 2FGRA 2R88A 2MHLA 2R89A 4BUMX 4D64A 2R4OA 4XNKA 2R8AA 3SY9A 1OSMA 4O4UA 3AA6A 3FYXA 3A0HO 4FSOA 4FZNA 4AKRB 3DA4A 2XE5A 5G39A 1HXXA 3TZGA 2Y0LA 2IWWA 4XNLA 2R4NA 3SY7A 3BS0A 4RLBA 4AYEC 2KZ7A 4KR8A 3AA0B 4FMSA 4CTDA 2XG6A 4C4VB 6PRNA 3HOLA 2K4TA 3POXA 1MM4A 5EE2A 3KZIO 4AUIA 5DL5A 4AFKA 1QJ8A 1GFPA 1IZNB 2R4PA 5FVNA 8PRNA 2J4UP 2MNHA 5GTHO 5E79O 4O49A 2GE4A 4IL6O 4O3XB 3O0EA 3POQA 4KRAA 4PJ0O 4E1TA 1ZHTA 3PRNA 1ORMA 1Q9FA 2Y2XA 1ZHXA 3HWBA 3POUA 1THQA 3AAAB 4RJXA 4FSPA 1MM5A 1HXTA 3VE1A 3LK2A 4UB8O 3WI5A 5TISO 3LK3B 1MPFA 3BRYA 1QJPA 4O3ZA 3HOEA 2LFUA 4K3BA 4D5UA 3AA7B 4O3WA 2KDYA 5GV0A 4UB6O 4C4VA 3EMNX 3K19A 2JMMA 4N59A 2KZ7B 1H6S1 5G3AA 1P4TA 4FRXA 3AA1A 4FRTA 5AFUL 2OMFA 1BH3A 1ZHWA 3T24A
chains in the Genus database with same CATH topology
2PORA 1BT9A 3AAEA 4GHBA 4LSEA 2LHFA 2XE2A 4PUXA 4FT6A 3LK41 2FGQX 2W80C 4AYID 4GCQA 5IYUA 5JDPA 4LSHA 4G75A 3PQSA 3A2SX 1BXWA 4F4BA 5AFUK 4G76A 1G90A 3G7GA 1GFQA 2Y7SA 3AA6B 3KVDD 4U9CA 2F1TA 2KC0A 3VZWX 2QTKA 3WI5A 3T20A 2KXPA 2W81C 3T0SA 5DL8A 4LSFA 2YPVA 3SYBA 4AKMA 4D65A 4RLCA 5G26A 3V8UA 5PRNA 3VY8X 3RBHA 4AYMC 4FUVA 3GP6A 2Y0HA 1ZHYA 3AAEB 1E54A 3PORA 1IZNA 3VZTX 2M06A 2PRNA 2J1NA 3SZVA 2XTQA 4JFBA 1GFOA 1QJ9A 5ADXL 3QRCA 3QRAA 2YNKA 4B61A 4Z3TA 2N2MA 2F1VA 1OPFA 3AAAA 4FOZA 3HW9A 2XTRA 1GFMA 3LK42 4N58A 5T5FA 4RJWA 3C5OA 1YS5A 3PQUA 4JCHA 5DL6A 4AYNA 2O4VA 3LK3A 2X27X 3JTYA 3LK2B 4AKRA 3NSGA 3AA7A 4FESA 1PRNA 4GCSA 3SY7A 2N2LA 1PHOA 7PRNA 2ZLDA 2KXPB 3UAQA 3DA3A 4QQ1A 2ERVA 4LSIA 3AA0A 2XE1A 2ODJA 4GCPA 4O4XA 3SYSA 5ADXK 2XE3A 5DL7A 4KR4A 3AA1B 2ZFGA 4AYDC 2Y0KA 4GF4A 1ZHZA 3UPGA 5D5DA 4O3YA 4RL9A 3VZUX 4C69X 3WI4A 4E1SA 4FZMA 3SZDA 1GFNA 2XMXA 4FZLA 4AZLA 3VE2A 2M07A 2K0LA 3VY9X 3UU2A 1HXUA 1Q9GA 2FGRA 4D64A 2MHLA 4BUMX 4XNKA 3SY9A 1OSMA 4O4UA 3AA6A 3FYXA 4FSOA 4FZNA 4AKRB 3DA4A 2XE5A 3TZGA 1HXXA 2Y0LA 4XNLA 4RLBA 4AYEC 2KZ7A 4KR8A 3AA0B 4FMSA 2XG6A 6PRNA 3HOLA 2K4TA 3POXA 1MM4A 5EE2A 4AUIA 5DL5A 4AFKA 1QJ8A 1GFPA 1IZNB 5FVNA 8PRNA 2J4UP 2MNHA 4O49A 2GE4A 4O3XB 3O0EA 3POQA 4KRAA 4E1TA 1ZHTA 3PRNA 1ORMA 1Q9FA 2Y2XA 1ZHXA 3HWBA 3POUA 1THQA 3AAAB 4RJXA 4FSPA 1MM5A 1HXTA 3VE1A 3LK2A 3LK3B 1MPFA 1QJPA 4O3ZA 3HOEA 2LFUA 4D5UA 3AA7B 4O3WA 2KDYA 5GV0A 3EMNX 3K19A 2JMMA 4N59A 2KZ7B 1H6S1 1P4TA 4FRXA 3AA1A 4FRTA 5AFUL 2OMFA 1BH3A 1ZHWA 3T24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2POR A;  1BT9 A;  4LSE A;  2XE2 A;  4FT6 A;  2FGQ X;  4GCQ A;  5JDP A;  4LSH A;  3A2S X;  1GFQ A;  3WI5 A;  3VZW X;  2QTK A;  3T0S A;  5DL8 A;  4LSF A;  3SYB A;  4D65 A;  5PRN A;  3VY8 X;  2Y0H A;  1E54 A;  3POR A;  3VZT X;  2PRN A;  2J1N A;  3SZV A;  4JFB A;  1GFO A;  1OPF A;  4FOZ A;  3T20 A;  3HW9 A;  1GFM A;  4RJW A;  5DL6 A;  2O4V A;  3JTY A;  3NSG A;  3SY7 A;  7PRN A;  1PRN A;  4GCS A;  1PHO A;  2ZLD A;  4LSI A;  2XE1 A;  2ODJ A;  4GCP A;  3SYS A;  2XE3 A;  5DL7 A;  4KR4 A;  2ZFG A;  2Y0K A;  3UPG A;  3VZU X;  4C69 X;  3WI4 A;  3SZD A;  1GFN A;  3VY9 X;  3UU2 A;  1HXU A;  2FGR A;  4D64 A;  4BUM X;  3SY9 A;  1OSM A;  3FYX A;  4FSO A;  2XE5 A;  1HXX A;  2Y0L A;  4KR8 A;  4FMS A;  2XG6 A;  6PRN A;  2K4T A;  3POX A;  4AUI A;  5DL5 A;  8PRN A;  2J4U P;  1GFP A;  5FVN A;  3O0E A;  3POQ A;  4KRA A;  3PRN A;  2Y2X A;  3POU A;  3HWB A;  4RJX A;  4FSP A;  1HXT A;  1MPF A;  4D5U A;  3EMN X;  3K19 A;  1H6S 1;  4FRX A;  4FRT A;  2OMF A;  1BH3 A;  3T24 A; 
#chains in the Genus database with same CATH topology
 2AXT O;  1BT9 A;  2POR A;  3AAE A;  4GHB A;  4K3C A;  2LHF A;  2XE2 A;  4LSE A;  5B66 O;  4PUX A;  4FT6 A;  3LK4 1;  2WVP A;  3NJT A;  2FGQ X;  5G38 A;  2W80 C;  4AYI D;  4GCQ A;  5IYU A;  5JDP A;  3PGS A;  4LSH A;  3DWO X;  3A0B O;  4G75 A;  3PQS A;  3A2S X;  1BXW A;  4F4B A;  5AFU K;  4G76 A;  1G90 A;  3G7G A;  1GFQ A;  2Y7S A;  3AA6 B;  3KVD D;  4U9C A;  2F1T A;  2JQY A;  2KC0 A;  2QTK A;  3VZW X;  4C00 A;  3T20 A;  2KXP A;  2W81 C;  3T0S A;  5DL8 A;  1T1L A;  2YPV A;  4LSF A;  3SYB A;  3PGR A;  4AKM A;  4D65 A;  5H2F O;  4RLC A;  5G26 A;  3V8U A;  5PRN A;  3WU2 O;  3VY8 X;  3RBH A;  4AYM C;  4FUV A;  5KAI O;  1T16 A;  3GP6 A;  5GTI O;  2WJQ A;  2Y0H A;  1ZHY A;  3AAE B;  1E54 A;  3POR A;  1IZN A;  3VZT X;  2M06 A;  2PRN A;  3PF1 A;  2F1C X;  2J1N A;  2XTQ A;  3SZV A;  4JFB A;  1GFO A;  1QJ9 A;  5ADX L;  3QRC A;  3QRA A;  2YNK A;  7PRN A;  4B61 A;  4Z3T A;  2N2M A;  2F1V A;  4N75 A;  1OPF A;  3AAA A;  4FOZ A;  2WJR A;  2XTR A;  1GFM A;  3HW9 A;  3LK4 2;  4N58 A;  4RJW A;  3C5O A;  1YS5 A;  3PQU A;  4JCH A;  5DL6 A;  4AYN A;  2O4V A;  3LK3 A;  2X27 X;  3JTY A;  3LK2 B;  4AKR A;  3NSG A;  3AA7 A;  4FES A;  1PRN A;  4GCS A;  5T5F A;  2N2L A;  1PHO A;  2R4L A;  2ZLD A;  2KXP B;  3UAQ A;  3DA3 A;  4QQ1 A;  2ERV A;  5KAF O;  4LSI A;  3AA0 A;  2XE1 A;  2ODJ A;  4GCP A;  4O4X A;  3SYS A;  5ADX K;  2XE3 A;  4N74 A;  5DL7 A;  4KR4 A;  3AA1 B;  2ZFG A;  4AYD C;  2Y0K A;  3BRZ A;  3PGU A;  4GF4 A;  1ZHZ A;  5B5E O;  5D5D A;  3UPG A;  4O3Y A;  4RL9 A;  3VZU X;  4C69 X;  3WI4 A;  2X9K A;  4FQE A;  4FZM A;  4E1S A;  1S5L O;  2IWV A;  1GFN A;  3DWN A;  2XMX A;  3DZM A;  3JCU O;  4FZL A;  3SZD A;  4AZL A;  3VE2 A;  2M07 A;  2K0L A;  4PR7 A;  3VY9 X;  3UU2 A;  1HXU A;  1Q9G A;  2FGR A;  2R88 A;  2MHL A;  2R89 A;  4BUM X;  4D64 A;  2R4O A;  4XNK A;  2R8A A;  3SY9 A;  1OSM A;  4O4U A;  3AA6 A;  3FYX A;  3A0H O;  4FSO A;  4FZN A;  4AKR B;  3DA4 A;  2XE5 A;  5G39 A;  1HXX A;  3TZG A;  2Y0L A;  2IWW A;  4XNL A;  2R4N A;  3SY7 A;  3BS0 A;  4RLB A;  4AYE C;  2KZ7 A;  4KR8 A;  3AA0 B;  4FMS A;  4CTD A;  2XG6 A;  4C4V B;  6PRN A;  3HOL A;  2K4T A;  3POX A;  1MM4 A;  5EE2 A;  3KZI O;  4AUI A;  5DL5 A;  4AFK A;  1QJ8 A;  1GFP A;  1IZN B;  2R4P A;  5FVN A;  8PRN A;  2J4U P;  2MNH A;  5GTH O;  5E79 O;  4O49 A;  2GE4 A;  4IL6 O;  4O3X B;  3O0E A;  3POQ A;  4KRA A;  4PJ0 O;  4E1T A;  1ZHT A;  3PRN A;  1ORM A;  1Q9F A;  2Y2X A;  1ZHX A;  3HWB A;  3POU A;  1THQ A;  3AAA B;  4RJX A;  4FSP A;  1MM5 A;  1HXT A;  3VE1 A;  3LK2 A;  4UB8 O;  3WI5 A;  5TIS O;  3LK3 B;  1MPF A;  3BRY A;  1QJP A;  4O3Z A;  3HOE A;  2LFU A;  4K3B A;  4D5U A;  3AA7 B;  4O3W A;  2KDY A;  5GV0 A;  4UB6 O;  4C4V A;  3EMN X;  3K19 A;  2JMM A;  4N59 A;  2KZ7 B;  1H6S 1;  5G3A A;  1P4T A;  4FRX A;  3AA1 A;  4FRT A;  5AFU L;  2OMF A;  1BH3 A;  1ZHW A;  3T24 A; 
#chains in the Genus database with same CATH homology
 2POR A;  1BT9 A;  3AAE A;  4GHB A;  4LSE A;  2LHF A;  2XE2 A;  4PUX A;  4FT6 A;  3LK4 1;  2FGQ X;  2W80 C;  4AYI D;  4GCQ A;  5IYU A;  5JDP A;  4LSH A;  4G75 A;  3PQS A;  3A2S X;  1BXW A;  4F4B A;  5AFU K;  4G76 A;  1G90 A;  3G7G A;  1GFQ A;  2Y7S A;  3AA6 B;  3KVD D;  4U9C A;  2F1T A;  2KC0 A;  3VZW X;  2QTK A;  3WI5 A;  3T20 A;  2KXP A;  2W81 C;  3T0S A;  5DL8 A;  4LSF A;  2YPV A;  3SYB A;  4AKM A;  4D65 A;  4RLC A;  5G26 A;  3V8U A;  5PRN A;  3VY8 X;  3RBH A;  4AYM C;  4FUV A;  3GP6 A;  2Y0H A;  1ZHY A;  3AAE B;  1E54 A;  3POR A;  1IZN A;  3VZT X;  2M06 A;  2PRN A;  2J1N A;  3SZV A;  2XTQ A;  4JFB A;  1GFO A;  1QJ9 A;  5ADX L;  3QRC A;  3QRA A;  2YNK A;  4B61 A;  4Z3T A;  2N2M A;  2F1V A;  1OPF A;  3AAA A;  4FOZ A;  3HW9 A;  2XTR A;  1GFM A;  3LK4 2;  4N58 A;  5T5F A;  4RJW A;  3C5O A;  1YS5 A;  3PQU A;  4JCH A;  5DL6 A;  4AYN A;  2O4V A;  3LK3 A;  2X27 X;  3JTY A;  3LK2 B;  4AKR A;  3NSG A;  3AA7 A;  4FES A;  1PRN A;  4GCS A;  3SY7 A;  2N2L A;  1PHO A;  7PRN A;  2ZLD A;  2KXP B;  3UAQ A;  3DA3 A;  4QQ1 A;  2ERV A;  4LSI A;  3AA0 A;  2XE1 A;  2ODJ A;  4GCP A;  4O4X A;  3SYS A;  5ADX K;  2XE3 A;  5DL7 A;  4KR4 A;  3AA1 B;  2ZFG A;  4AYD C;  2Y0K A;  4GF4 A;  1ZHZ A;  3UPG A;  5D5D A;  4O3Y A;  4RL9 A;  3VZU X;  4C69 X;  3WI4 A;  4E1S A;  4FZM A;  3SZD A;  1GFN A;  2XMX A;  4FZL A;  4AZL A;  3VE2 A;  2M07 A;  2K0L A;  3VY9 X;  3UU2 A;  1HXU A;  1Q9G A;  2FGR A;  4D64 A;  2MHL A;  4BUM X;  4XNK A;  3SY9 A;  1OSM A;  4O4U A;  3AA6 A;  3FYX A;  4FSO A;  4FZN A;  4AKR B;  3DA4 A;  2XE5 A;  3TZG A;  1HXX A;  2Y0L A;  4XNL A;  4RLB A;  4AYE C;  2KZ7 A;  4KR8 A;  3AA0 B;  4FMS A;  2XG6 A;  6PRN A;  3HOL A;  2K4T A;  3POX A;  1MM4 A;  5EE2 A;  4AUI A;  5DL5 A;  4AFK A;  1QJ8 A;  1GFP A;  1IZN B;  5FVN A;  8PRN A;  2J4U P;  2MNH A;  4O49 A;  2GE4 A;  4O3X B;  3O0E A;  3POQ A;  4KRA A;  4E1T A;  1ZHT A;  3PRN A;  1ORM A;  1Q9F A;  2Y2X A;  1ZHX A;  3HWB A;  3POU A;  1THQ A;  3AAA B;  4RJX A;  4FSP A;  1MM5 A;  1HXT A;  3VE1 A;  3LK2 A;  3LK3 B;  1MPF A;  1QJP A;  4O3Z A;  3HOE A;  2LFU A;  4D5U A;  3AA7 B;  4O3W A;  2KDY A;  5GV0 A;  3EMN X;  3K19 A;  2JMM A;  4N59 A;  2KZ7 B;  1H6S 1;  1P4T A;  4FRX A;  3AA1 A;  4FRT A;  5AFU L;  2OMF A;  1BH3 A;  1ZHW A;  3T24 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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