5IYUA

Alge_cim
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
454
structure length
429
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
molecule keywords Alginate production protein AlgE
total genus 125
structure length 429
sequence length 454
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5iyuA00
5IYUA 4AFKA 4B61A 4AZLA 5D5DA 3RBHA 4XNKA 4XNLA
chains in the Genus database with same CATH superfamily
3WI5A 2R8AA 3DZMA 1T1LA 1BH3A 2GE4A 3PF1A 4N74A 2X27X 3LK3B 4O3ZA 4RJWA 4FSOA 4JFBA 2Y7SA 2J4UP 4N58A 5KAFO 3POUA 3AA7A 4FZLA 4AYMC 3NSGA 2KXPA 2MNHA 4FRTA 3PQSA 4GCQA 4AYNA 1PHOA 4E1SA 2F1TA 3A0HO 3LK2A 4F4BA 2FGRA 3A2SX 4AKRB 5B66O 3VZTX 4PUXA 4G75A 4LSIA 4XNKA 4IL6O 2JMMA 4QQ1A 1HXUA 4G76A 1E54A 5AFUL 4D5UA 5JDPA 1THQA 4LSHA 4LSFA 1HXXA 2Y0KA 2Y2XA 3G7GA 4O4UA 3HOLA 2N2MA 2ODJA 3LK42 4JCHA 4UB6O 2FGQX 2R4OA 3AA7B 4U9CA 5GTIO 3VY9X 1Q9FA 3T24A 4AKRA 3AAAB 3JTYA 4N59A 1QJ8A 1ZHXA 1HXTA 2KDYA 5G39A 3DWNA 4E1TA 2O4VA 8PRNA 2LHFA 3VE1A 3HOEA 3HWBA 4FZMA 3KVDD 4LSEA 4C69X 3SYBA 3QRCA 1ZHYA 3LK3A 3RBHA 1GFNA 3VE2A 3PQUA 3BRYA 2M07A 2XTRA 5FVNA 3PGSA 3SZDA 3WI4A 3FYXA 2IWVA 4PJ0O 4RJXA 4O3YA 4AUIA 3LK41 3SYSA 5IYUA 2J1NA 2KXPB 4RLCA 2K4TA 1ZHZA 4O4XA 1ZHWA 3AA0A 5KAIO 2OMFA 2LFUA 2PRNA 1GFPA 2WJQA 1ZHTA 4FRXA 4FZNA 5B5EO 5GTHO 3SZVA 3DA3A 4AFKA 3SY9A 3PGRA 4FESA 3O0EA 3TZGA 4GCSA 4O3XB 1GFOA 4AKMA 3QRAA 5GV0A 3KZIO 2R88A 2X9KA 4CTDA 5G38A 3WU2O 2M06A 3DWOX 6PRNA 1MPFA 3POXA 4Z3TA 3DA4A 4KRAA 2R89A 5H2FO 1G90A 2KZ7B 3NJTA 5D5DA 2XE2A 4O49A 3K19A 5EE2A 4N75A 4K3CA 4D65A 3AA1A 2Y0HA 2N2LA 4RL9A 4B61A 1GFMA 1QJPA 2QTKA 2K0LA 1S5LO 4RLBA 4AYID 1BXWA 4FSPA 5PRNA 4K3BA 1QJ9A 4FT6A 5TISO 3C5OA 3PORA 1BT9A 1MM5A 1T16A 3T0SA 4AZLA 2KC0A 2W81C 4C4VB 2W80C 3AA6B 2F1VA 5G3AA 5AFUK 7PRNA 3AAEB 4UB8O 3UAQA 5ADXK 2XE5A 2XE1A 2Y0LA 4FOZA 3POQA 2XE3A 1GFQA 3AA0B 4FMSA 1YS5A 3BRZA 4AYDC 3AA1B 2XTQA 3AAEA 3LK2B 1P4TA 2R4LA 2YNKA 3T20A 3EMNX 2XG6A 1IZNA 4FUVA 2PORA 4BUMX 1PRNA 3PRNA 2IWWA 2WJRA 2ZLDA 4XNLA 5T5FA 3V8UA 4C4VA 1Q9GA 1OPFA 3A0BO 4C00A 4PR7A 1OSMA 3PGUA 4O3WA 3HW9A 5DL7A 5DL8A 3VZUX 4D64A 2ZFGA 4GF4A 4KR8A 3GP6A 4KR4A 1ORMA 2R4NA 3AAAA 2JQYA 1IZNB 3VY8X 3UU2A 2MHLA 2R4PA 2XMXA 2KZ7A 5DL6A 4FQEA 1H6S1 2F1CX 3SY7A 5ADXL 4GHBA 2YPVA 4AYEC 5G26A 3AA6A 2ERVA 3BS0A 3VZWX 2WVPA 3JCUO 5DL5A 5E79O 2AXTO 1MM4A 3UPGA 4GCPA
chains in the Genus database with same CATH topology
3WI5A 4RJWA 2GE4A 1BH3A 4O3ZA 2X27X 3LK3B 4FSOA 4JFBA 2Y7SA 2J4UP 4N58A 3POUA 3AA7A 4FZLA 4AYMC 3NSGA 2KXPA 2MNHA 4FRTA 3PQSA 4GCQA 4AYNA 1PHOA 4E1SA 2F1TA 3LK2A 4F4BA 2FGRA 3A2SX 4AKRB 3VZTX 4PUXA 4G75A 4LSIA 4XNKA 2JMMA 4QQ1A 1HXUA 4G76A 1E54A 5AFUL 4D5UA 5JDPA 1THQA 4LSHA 4LSFA 1HXXA 2Y0KA 2Y2XA 3G7GA 4O4UA 3HOLA 2N2MA 2ODJA 3LK42 4JCHA 2FGQX 3AA7B 4U9CA 3VY9X 4AKRA 1Q9FA 3T24A 3AAAB 3JTYA 4N59A 1QJ8A 1ZHXA 1HXTA 2KDYA 4E1TA 2O4VA 8PRNA 2LHFA 3VE1A 3HOEA 3HWBA 4FZMA 3KVDD 4LSEA 4C69X 3SYBA 3QRCA 1ZHYA 3LK3A 3RBHA 1GFNA 3VE2A 3PQUA 2M07A 5FVNA 3SZDA 3WI4A 3FYXA 4RJXA 4O3YA 4AUIA 3LK41 3SYSA 5IYUA 2J1NA 2KXPB 4RLCA 2K4TA 1ZHZA 4O4XA 1ZHWA 3AA0A 2OMFA 2LFUA 2PRNA 1GFPA 4FRXA 1ZHTA 4FZNA 3SZVA 3DA3A 4AFKA 3SY9A 4FESA 3O0EA 3TZGA 4GCSA 4O3XB 1GFOA 4AKMA 3QRAA 5GV0A 2M06A 6PRNA 1G90A 1MPFA 3POXA 4Z3TA 3DA4A 4KRAA 2KZ7B 5D5DA 2XE2A 4O49A 3K19A 5EE2A 4D65A 3AA1A 2Y0HA 2N2LA 4RL9A 4B61A 1GFMA 1QJPA 2QTKA 2K0LA 4RLBA 4AYID 1BXWA 4FSPA 5PRNA 1QJ9A 4FT6A 3C5OA 3PORA 1BT9A 1MM5A 3T0SA 4AZLA 2KC0A 2W81C 1MM4A 2W80C 3AA6B 2F1VA 5AFUK 7PRNA 5ADXK 3AAEB 3UAQA 2XE5A 2XE1A 2Y0LA 4FOZA 3POQA 2XE3A 1GFQA 3AA0B 4FMSA 1YS5A 4AYDC 3AA1B 2XTQA 3AAEA 3LK2B 1P4TA 2YNKA 3T20A 3EMNX 2XG6A 1IZNA 4FUVA 2PORA 4BUMX 1PRNA 3PRNA 2ZLDA 4XNLA 5T5FA 3V8UA 1Q9GA 1OPFA 1OSMA 4O3WA 3HW9A 5DL7A 5DL8A 3VZUX 4D64A 4GF4A 4KR8A 3GP6A 4KR4A 1ORMA 3AAAA 1IZNB 3VY8X 3UU2A 2MHLA 2XMXA 2KZ7A 5DL6A 1H6S1 3SY7A 5ADXL 4GHBA 2YPVA 4AYEC 5G26A 3AA6A 2ERVA 3VZWX 5DL5A 2XTRA 2ZFGA 3UPGA 4GCPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYU A;  4AFK A;  4B61 A;  4AZL A;  5D5D A;  3RBH A;  4XNK A;  4XNL A; 
#chains in the Genus database with same CATH topology
 3WI5 A;  2R8A A;  3DZM A;  1T1L A;  1BH3 A;  2GE4 A;  3PF1 A;  4N74 A;  2X27 X;  3LK3 B;  4O3Z A;  4RJW A;  4FSO A;  4JFB A;  2Y7S A;  2J4U P;  4N58 A;  5KAF O;  3POU A;  3AA7 A;  4FZL A;  4AYM C;  3NSG A;  2KXP A;  2MNH A;  4FRT A;  3PQS A;  4GCQ A;  4AYN A;  1PHO A;  4E1S A;  2F1T A;  3A0H O;  3LK2 A;  4F4B A;  2FGR A;  3A2S X;  4AKR B;  5B66 O;  3VZT X;  4PUX A;  4G75 A;  4LSI A;  4XNK A;  4IL6 O;  2JMM A;  4QQ1 A;  1HXU A;  4G76 A;  1E54 A;  5AFU L;  4D5U A;  5JDP A;  1THQ A;  4LSH A;  4LSF A;  1HXX A;  2Y0K A;  2Y2X A;  3G7G A;  4O4U A;  3HOL A;  2N2M A;  2ODJ A;  3LK4 2;  4JCH A;  4UB6 O;  2FGQ X;  2R4O A;  3AA7 B;  4U9C A;  5GTI O;  3VY9 X;  1Q9F A;  3T24 A;  4AKR A;  3AAA B;  3JTY A;  4N59 A;  1QJ8 A;  1ZHX A;  1HXT A;  2KDY A;  5G39 A;  3DWN A;  4E1T A;  2O4V A;  8PRN A;  2LHF A;  3VE1 A;  3HOE A;  3HWB A;  4FZM A;  3KVD D;  4LSE A;  4C69 X;  3SYB A;  3QRC A;  1ZHY A;  3LK3 A;  3RBH A;  1GFN A;  3VE2 A;  3PQU A;  3BRY A;  2M07 A;  2XTR A;  5FVN A;  3PGS A;  3SZD A;  3WI4 A;  3FYX A;  2IWV A;  4PJ0 O;  4RJX A;  4O3Y A;  4AUI A;  3LK4 1;  3SYS A;  5IYU A;  2J1N A;  2KXP B;  4RLC A;  2K4T A;  1ZHZ A;  4O4X A;  1ZHW A;  3AA0 A;  5KAI O;  2OMF A;  2LFU A;  2PRN A;  1GFP A;  2WJQ A;  1ZHT A;  4FRX A;  4FZN A;  5B5E O;  5GTH O;  3SZV A;  3DA3 A;  4AFK A;  3SY9 A;  3PGR A;  4FES A;  3O0E A;  3TZG A;  4GCS A;  4O3X B;  1GFO A;  4AKM A;  3QRA A;  5GV0 A;  3KZI O;  2R88 A;  2X9K A;  4CTD A;  5G38 A;  3WU2 O;  2M06 A;  3DWO X;  6PRN A;  1MPF A;  3POX A;  4Z3T A;  3DA4 A;  4KRA A;  2R89 A;  5H2F O;  1G90 A;  2KZ7 B;  3NJT A;  5D5D A;  2XE2 A;  4O49 A;  3K19 A;  5EE2 A;  4N75 A;  4K3C A;  4D65 A;  3AA1 A;  2Y0H A;  2N2L A;  4RL9 A;  4B61 A;  1GFM A;  1QJP A;  2QTK A;  2K0L A;  1S5L O;  4RLB A;  4AYI D;  1BXW A;  4FSP A;  5PRN A;  4K3B A;  1QJ9 A;  4FT6 A;  5TIS O;  3C5O A;  3POR A;  1BT9 A;  1MM5 A;  1T16 A;  3T0S A;  4AZL A;  2KC0 A;  2W81 C;  4C4V B;  2W80 C;  3AA6 B;  2F1V A;  5G3A A;  5AFU K;  7PRN A;  3AAE B;  4UB8 O;  3UAQ A;  5ADX K;  2XE5 A;  2XE1 A;  2Y0L A;  4FOZ A;  3POQ A;  2XE3 A;  1GFQ A;  3AA0 B;  4FMS A;  1YS5 A;  3BRZ A;  4AYD C;  3AA1 B;  2XTQ A;  3AAE A;  3LK2 B;  1P4T A;  2R4L A;  2YNK A;  3T20 A;  3EMN X;  2XG6 A;  1IZN A;  4FUV A;  2POR A;  4BUM X;  1PRN A;  3PRN A;  2IWW A;  2WJR A;  2ZLD A;  4XNL A;  5T5F A;  3V8U A;  4C4V A;  1Q9G A;  1OPF A;  3A0B O;  4C00 A;  4PR7 A;  1OSM A;  3PGU A;  4O3W A;  3HW9 A;  5DL7 A;  5DL8 A;  3VZU X;  4D64 A;  2ZFG A;  4GF4 A;  4KR8 A;  3GP6 A;  4KR4 A;  1ORM A;  2R4N A;  3AAA A;  2JQY A;  1IZN B;  3VY8 X;  3UU2 A;  2MHL A;  2R4P A;  2XMX A;  2KZ7 A;  5DL6 A;  4FQE A;  1H6S 1;  2F1C X;  3SY7 A;  5ADX L;  4GHB A;  2YPV A;  4AYE C;  5G26 A;  3AA6 A;  2ERV A;  3BS0 A;  3VZW X;  2WVP A;  3JCU O;  5DL5 A;  5E79 O;  2AXT O;  1MM4 A;  3UPG A;  4GCP A; 
#chains in the Genus database with same CATH homology
 3WI5 A;  4RJW A;  2GE4 A;  1BH3 A;  4O3Z A;  2X27 X;  3LK3 B;  4FSO A;  4JFB A;  2Y7S A;  2J4U P;  4N58 A;  3POU A;  3AA7 A;  4FZL A;  4AYM C;  3NSG A;  2KXP A;  2MNH A;  4FRT A;  3PQS A;  4GCQ A;  4AYN A;  1PHO A;  4E1S A;  2F1T A;  3LK2 A;  4F4B A;  2FGR A;  3A2S X;  4AKR B;  3VZT X;  4PUX A;  4G75 A;  4LSI A;  4XNK A;  2JMM A;  4QQ1 A;  1HXU A;  4G76 A;  1E54 A;  5AFU L;  4D5U A;  5JDP A;  1THQ A;  4LSH A;  4LSF A;  1HXX A;  2Y0K A;  2Y2X A;  3G7G A;  4O4U A;  3HOL A;  2N2M A;  2ODJ A;  3LK4 2;  4JCH A;  2FGQ X;  3AA7 B;  4U9C A;  3VY9 X;  4AKR A;  1Q9F A;  3T24 A;  3AAA B;  3JTY A;  4N59 A;  1QJ8 A;  1ZHX A;  1HXT A;  2KDY A;  4E1T A;  2O4V A;  8PRN A;  2LHF A;  3VE1 A;  3HOE A;  3HWB A;  4FZM A;  3KVD D;  4LSE A;  4C69 X;  3SYB A;  3QRC A;  1ZHY A;  3LK3 A;  3RBH A;  1GFN A;  3VE2 A;  3PQU A;  2M07 A;  5FVN A;  3SZD A;  3WI4 A;  3FYX A;  4RJX A;  4O3Y A;  4AUI A;  3LK4 1;  3SYS A;  5IYU A;  2J1N A;  2KXP B;  4RLC A;  2K4T A;  1ZHZ A;  4O4X A;  1ZHW A;  3AA0 A;  2OMF A;  2LFU A;  2PRN A;  1GFP A;  4FRX A;  1ZHT A;  4FZN A;  3SZV A;  3DA3 A;  4AFK A;  3SY9 A;  4FES A;  3O0E A;  3TZG A;  4GCS A;  4O3X B;  1GFO A;  4AKM A;  3QRA A;  5GV0 A;  2M06 A;  6PRN A;  1G90 A;  1MPF A;  3POX A;  4Z3T A;  3DA4 A;  4KRA A;  2KZ7 B;  5D5D A;  2XE2 A;  4O49 A;  3K19 A;  5EE2 A;  4D65 A;  3AA1 A;  2Y0H A;  2N2L A;  4RL9 A;  4B61 A;  1GFM A;  1QJP A;  2QTK A;  2K0L A;  4RLB A;  4AYI D;  1BXW A;  4FSP A;  5PRN A;  1QJ9 A;  4FT6 A;  3C5O A;  3POR A;  1BT9 A;  1MM5 A;  3T0S A;  4AZL A;  2KC0 A;  2W81 C;  1MM4 A;  2W80 C;  3AA6 B;  2F1V A;  5AFU K;  7PRN A;  5ADX K;  3AAE B;  3UAQ A;  2XE5 A;  2XE1 A;  2Y0L A;  4FOZ A;  3POQ A;  2XE3 A;  1GFQ A;  3AA0 B;  4FMS A;  1YS5 A;  4AYD C;  3AA1 B;  2XTQ A;  3AAE A;  3LK2 B;  1P4T A;  2YNK A;  3T20 A;  3EMN X;  2XG6 A;  1IZN A;  4FUV A;  2POR A;  4BUM X;  1PRN A;  3PRN A;  2ZLD A;  4XNL A;  5T5F A;  3V8U A;  1Q9G A;  1OPF A;  1OSM A;  4O3W A;  3HW9 A;  5DL7 A;  5DL8 A;  3VZU X;  4D64 A;  4GF4 A;  4KR8 A;  3GP6 A;  4KR4 A;  1ORM A;  3AAA A;  1IZN B;  3VY8 X;  3UU2 A;  2MHL A;  2XMX A;  2KZ7 A;  5DL6 A;  1H6S 1;  3SY7 A;  5ADX L;  4GHB A;  2YPV A;  4AYE C;  5G26 A;  3AA6 A;  2ERV A;  3VZW X;  5DL5 A;  2XTR A;  2ZFG A;  3UPG A;  4GCP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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