5IYUA

Alge_cim
Total Genus 125
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
454
structure length
429
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Alginate production protein AlgE
publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Membrane protein
total genus 125
structure length 429
sequence length 454
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5iyuA00
3RBHA 4AZLA 4AFKA 4B61A 4XNKA 5IYUA 5D5DA 4XNLA
chains in the Genus database with same CATH superfamily
4BUMX 5ADXK 2W80C 2R4LA 3LK3A 4AKRB 1GFNA 5KAFO 2F1VA 3BRYA 3HOEA 4C00A 6PRNA 3AA7A 4FMSA 4CTDA 4GHBA 3G7GA 3WU2O 2IWWA 1PRNA 4AFKA 1ORMA 2XE1A 4IL6O 3POXA 4N75A 1ZHXA 3C5OA 3DWOX 5DL6A 4FRTA 2Y0HA 4O49A 1GFOA 3VY8X 4RLCA 3FYXA 1THQA 2AXTO 4AYEC 5JDPA 1BT9A 1OSMA 2F1CX 4G76A 4PUXA 5B66O 1GFPA 4N74A 5G3AA 2R88A 2R4OA 2XE5A 3LK3B 2ZFGA 4U9CA 3UU2A 1T16A 7PRNA 2K4TA 4FOZA 4FZNA 2O4VA 5B5EO 2XE2A 3AA7B 3UPGA 4FZLA 3WI5A 2R8AA 5EE2A 2Y7SA 2PRNA 4FZMA 3UAQA 2XTQA 3HWBA 2K0LA 3A2SX 5FVNA 2X27X 3POUA 3SY7A 4RLBA 3DA3A 3SZDA 2R4PA 4LSEA 3T24A 1HXXA 4D64A 4PJ0O 3POQA 5DL7A 4GCQA 4K3BA 3DA4A 2LHFA 2Y0LA 4FSOA 2OMFA 2LFUA 3VY9X 4XNKA 4FUVA 3LK2A 2FGRA 2KZ7A 4PR7A 3RBHA 4GCPA 1QJPA 3QRAA 2WVPA 2ERVA 3HW9A 4O4XA 4LSFA 1ZHTA 4FSPA 4O3ZA 4AUIA 4JCHA 4RJWA 1QJ9A 2QTKA 2X9KA 2YNKA 1BXWA 1MM4A 3PRNA 4QQ1A 5TISO 5GTIO 1IZNA 2JQYA 3AAAA 2KC0A 2KXPA 3AA6A 8PRNA 3AAEA 3KZIO 4RJXA 4AZLA 1MPFA 2XE3A 4JFBA 4KR4A 2F1TA 1ZHYA 5T5FA 3EMNX 2FGQX 1S5LO 2JMMA 2Y0KA 3DWNA 3LK2B 3AA1A 2KZ7B 2MHLA 3PQSA 4C4VA 1HXUA 2W81C 3BS0A 1Q9FA 2J1NA 1G90A 4B61A 3LK41 1BH3A 5GV0A 3JTYA 4Z3TA 4D5UA 4FESA 2YPVA 4O3XB 3SYSA 4C69X 5GTHO 1QJ8A 3DZMA 4KRAA 4O3YA 4XNLA 4UB6O 4AYNA 3TZGA 2R4NA 3A0BO 3VE2A 4GCSA 4O4UA 1IZNB 5PRNA 3AAAB 4N58A 5DL8A 2N2LA 2KXPB 3AA6B 3O0EA 3AAEB 5AFUL 3PGUA 3VZWX 1ZHZA 3BRZA 1E54A 2ODJA 3JCUO 1ZHWA 3WI4A 3PORA 4FT6A 4FRXA 3AA0A 4G75A 3NSGA 2XMXA 3SY9A 3AA1B 4F4BA 3PGRA 4C4VB 2PORA 4K3CA 4LSIA 2J4UP 5KAIO 1H6S1 2GE4A 2MNHA 1PHOA 1GFMA 4N59A 1Q9GA 3VE1A 1P4TA 3NJTA 4D65A 4KR8A 3GP6A 5IYUA 1GFQA 2ZLDA 4FQEA 3T0SA 4E1SA 1T1LA 4GF4A 4AKRA 3PGSA 5G38A 3V8UA 3A0HO 3VZTX 2XG6A 2M07A 4O3WA 1OPFA 1YS5A 2WJRA 2IWVA 5D5DA 2Y2XA 5DL5A 5G39A 3SYBA 4E1TA 4AYID 3AA0B 2KDYA 3PF1A 3QRCA 2WJQA 1MM5A 4UB8O 3K19A 5G26A 2R89A 5E79O 3VZUX 5H2FO 3LK42 3SZVA 3T20A 3HOLA 2N2MA 4AKMA 4AYDC 4RL9A 5AFUK 3PQUA 4LSHA 1HXTA 2XTRA 4AYMC 5ADXL 3KVDD 2M06A
chains in the Genus database with same CATH topology
4BUMX 5ADXK 2W80C 3LK3A 4AKRB 1GFNA 2F1VA 3HOEA 6PRNA 3AA7A 4FMSA 4GHBA 3G7GA 1PRNA 4AFKA 1ORMA 2XE1A 3POXA 5DL6A 1ZHXA 3C5OA 4FRTA 2Y0HA 4O49A 1GFOA 3VY8X 4RLCA 3FYXA 1THQA 4AYEC 5JDPA 1BT9A 1OSMA 4G76A 4PUXA 1GFPA 3LK3B 4U9CA 2XE5A 2ZFGA 3UU2A 7PRNA 2K4TA 4FOZA 4FZNA 2O4VA 3UPGA 2XE2A 3AA7B 4FZLA 3WI5A 5EE2A 2Y7SA 2PRNA 4FZMA 3UAQA 2XTQA 3HWBA 2K0LA 3A2SX 5FVNA 2X27X 3POUA 3SY7A 4RLBA 3DA3A 3SZDA 4LSEA 3T24A 1HXXA 4D64A 3POQA 5DL7A 4GCQA 3DA4A 2LHFA 2Y0LA 4FSOA 2OMFA 2LFUA 3VY9X 4XNKA 4FUVA 3LK2A 2FGRA 2KZ7A 3RBHA 4GCPA 1QJPA 3QRAA 2ERVA 3HW9A 4O4XA 4LSFA 1ZHTA 4FSPA 4O3ZA 4AUIA 4JCHA 4RJWA 1QJ9A 2QTKA 2YNKA 4QQ1A 1BXWA 1MM4A 3PRNA 1IZNA 3AAAA 2KC0A 2KXPA 3AA6A 8PRNA 3AAEA 4RJXA 4AZLA 1MPFA 2XE3A 4JFBA 4KR4A 2F1TA 1ZHYA 5T5FA 3EMNX 2FGQX 2JMMA 2Y0KA 3LK2B 3AA1A 2KZ7B 2MHLA 3PQSA 1HXUA 2W81C 1Q9FA 2J1NA 1G90A 4B61A 3LK41 1BH3A 5GV0A 3JTYA 4Z3TA 4D5UA 4FESA 2YPVA 4O3XB 3SYSA 4C69X 1QJ8A 4KRAA 4XNLA 4O3YA 4AYNA 3TZGA 3VE2A 4GCSA 4O4UA 1IZNB 5PRNA 3AAAB 4N58A 5DL8A 2N2LA 2KXPB 3AA6B 3O0EA 3AAEB 5AFUL 3VZWX 1ZHZA 1E54A 2ODJA 1ZHWA 3WI4A 3PORA 4FT6A 4FRXA 3AA0A 4G75A 3NSGA 2XMXA 3SY9A 3AA1B 4F4BA 2PORA 4LSIA 2J4UP 1H6S1 2GE4A 2MNHA 1PHOA 1GFMA 4N59A 1Q9GA 3VE1A 1P4TA 4D65A 4KR8A 3GP6A 5IYUA 1GFQA 2ZLDA 3T0SA 4E1SA 4GF4A 4AKRA 3V8UA 3VZTX 2XG6A 2M07A 4O3WA 1OPFA 1YS5A 5D5DA 4E1TA 2Y2XA 5DL5A 3SYBA 4AYID 3AA0B 2KDYA 3QRCA 1MM5A 5G26A 3K19A 3VZUX 3LK42 3SZVA 3T20A 3HOLA 2N2MA 4AKMA 4AYDC 4RL9A 5AFUK 3PQUA 4LSHA 1HXTA 2XTRA 4AYMC 5ADXL 3KVDD 2M06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RBH A;  4AZL A;  4AFK A;  4B61 A;  4XNK A;  5IYU A;  5D5D A;  4XNL A; 
#chains in the Genus database with same CATH topology
 4BUM X;  5ADX K;  2W80 C;  2R4L A;  3LK3 A;  4AKR B;  1GFN A;  5KAF O;  2F1V A;  3BRY A;  3HOE A;  4C00 A;  6PRN A;  3AA7 A;  4FMS A;  4CTD A;  4GHB A;  3G7G A;  3WU2 O;  2IWW A;  1PRN A;  4AFK A;  1ORM A;  2XE1 A;  4IL6 O;  3POX A;  4N75 A;  1ZHX A;  3C5O A;  3DWO X;  5DL6 A;  4FRT A;  2Y0H A;  4O49 A;  1GFO A;  3VY8 X;  4RLC A;  3FYX A;  1THQ A;  2AXT O;  4AYE C;  5JDP A;  1BT9 A;  1OSM A;  2F1C X;  4G76 A;  4PUX A;  5B66 O;  1GFP A;  4N74 A;  5G3A A;  2R88 A;  2R4O A;  2XE5 A;  3LK3 B;  2ZFG A;  4U9C A;  3UU2 A;  1T16 A;  7PRN A;  2K4T A;  4FOZ A;  4FZN A;  2O4V A;  5B5E O;  2XE2 A;  3AA7 B;  3UPG A;  4FZL A;  3WI5 A;  2R8A A;  5EE2 A;  2Y7S A;  2PRN A;  4FZM A;  3UAQ A;  2XTQ A;  3HWB A;  2K0L A;  3A2S X;  5FVN A;  2X27 X;  3POU A;  3SY7 A;  4RLB A;  3DA3 A;  3SZD A;  2R4P A;  4LSE A;  3T24 A;  1HXX A;  4D64 A;  4PJ0 O;  3POQ A;  5DL7 A;  4GCQ A;  4K3B A;  3DA4 A;  2LHF A;  2Y0L A;  4FSO A;  2OMF A;  2LFU A;  3VY9 X;  4XNK A;  4FUV A;  3LK2 A;  2FGR A;  2KZ7 A;  4PR7 A;  3RBH A;  4GCP A;  1QJP A;  3QRA A;  2WVP A;  2ERV A;  3HW9 A;  4O4X A;  4LSF A;  1ZHT A;  4FSP A;  4O3Z A;  4AUI A;  4JCH A;  4RJW A;  1QJ9 A;  2QTK A;  2X9K A;  2YNK A;  1BXW A;  1MM4 A;  3PRN A;  4QQ1 A;  5TIS O;  5GTI O;  1IZN A;  2JQY A;  3AAA A;  2KC0 A;  2KXP A;  3AA6 A;  8PRN A;  3AAE A;  3KZI O;  4RJX A;  4AZL A;  1MPF A;  2XE3 A;  4JFB A;  4KR4 A;  2F1T A;  1ZHY A;  5T5F A;  3EMN X;  2FGQ X;  1S5L O;  2JMM A;  2Y0K A;  3DWN A;  3LK2 B;  3AA1 A;  2KZ7 B;  2MHL A;  3PQS A;  4C4V A;  1HXU A;  2W81 C;  3BS0 A;  1Q9F A;  2J1N A;  1G90 A;  4B61 A;  3LK4 1;  1BH3 A;  5GV0 A;  3JTY A;  4Z3T A;  4D5U A;  4FES A;  2YPV A;  4O3X B;  3SYS A;  4C69 X;  5GTH O;  1QJ8 A;  3DZM A;  4KRA A;  4O3Y A;  4XNL A;  4UB6 O;  4AYN A;  3TZG A;  2R4N A;  3A0B O;  3VE2 A;  4GCS A;  4O4U A;  1IZN B;  5PRN A;  3AAA B;  4N58 A;  5DL8 A;  2N2L A;  2KXP B;  3AA6 B;  3O0E A;  3AAE B;  5AFU L;  3PGU A;  3VZW X;  1ZHZ A;  3BRZ A;  1E54 A;  2ODJ A;  3JCU O;  1ZHW A;  3WI4 A;  3POR A;  4FT6 A;  4FRX A;  3AA0 A;  4G75 A;  3NSG A;  2XMX A;  3SY9 A;  3AA1 B;  4F4B A;  3PGR A;  4C4V B;  2POR A;  4K3C A;  4LSI A;  2J4U P;  5KAI O;  1H6S 1;  2GE4 A;  2MNH A;  1PHO A;  1GFM A;  4N59 A;  1Q9G A;  3VE1 A;  1P4T A;  3NJT A;  4D65 A;  4KR8 A;  3GP6 A;  5IYU A;  1GFQ A;  2ZLD A;  4FQE A;  3T0S A;  4E1S A;  1T1L A;  4GF4 A;  4AKR A;  3PGS A;  5G38 A;  3V8U A;  3A0H O;  3VZT X;  2XG6 A;  2M07 A;  4O3W A;  1OPF A;  1YS5 A;  2WJR A;  2IWV A;  5D5D A;  2Y2X A;  5DL5 A;  5G39 A;  3SYB A;  4E1T A;  4AYI D;  3AA0 B;  2KDY A;  3PF1 A;  3QRC A;  2WJQ A;  1MM5 A;  4UB8 O;  3K19 A;  5G26 A;  2R89 A;  5E79 O;  3VZU X;  5H2F O;  3LK4 2;  3SZV A;  3T20 A;  3HOL A;  2N2M A;  4AKM A;  4AYD C;  4RL9 A;  5AFU K;  3PQU A;  4LSH A;  1HXT A;  2XTR A;  4AYM C;  5ADX L;  3KVD D;  2M06 A; 
#chains in the Genus database with same CATH homology
 4BUM X;  5ADX K;  2W80 C;  3LK3 A;  4AKR B;  1GFN A;  2F1V A;  3HOE A;  6PRN A;  3AA7 A;  4FMS A;  4GHB A;  3G7G A;  1PRN A;  4AFK A;  1ORM A;  2XE1 A;  3POX A;  5DL6 A;  1ZHX A;  3C5O A;  4FRT A;  2Y0H A;  4O49 A;  1GFO A;  3VY8 X;  4RLC A;  3FYX A;  1THQ A;  4AYE C;  5JDP A;  1BT9 A;  1OSM A;  4G76 A;  4PUX A;  1GFP A;  3LK3 B;  4U9C A;  2XE5 A;  2ZFG A;  3UU2 A;  7PRN A;  2K4T A;  4FOZ A;  4FZN A;  2O4V A;  3UPG A;  2XE2 A;  3AA7 B;  4FZL A;  3WI5 A;  5EE2 A;  2Y7S A;  2PRN A;  4FZM A;  3UAQ A;  2XTQ A;  3HWB A;  2K0L A;  3A2S X;  5FVN A;  2X27 X;  3POU A;  3SY7 A;  4RLB A;  3DA3 A;  3SZD A;  4LSE A;  3T24 A;  1HXX A;  4D64 A;  3POQ A;  5DL7 A;  4GCQ A;  3DA4 A;  2LHF A;  2Y0L A;  4FSO A;  2OMF A;  2LFU A;  3VY9 X;  4XNK A;  4FUV A;  3LK2 A;  2FGR A;  2KZ7 A;  3RBH A;  4GCP A;  1QJP A;  3QRA A;  2ERV A;  3HW9 A;  4O4X A;  4LSF A;  1ZHT A;  4FSP A;  4O3Z A;  4AUI A;  4JCH A;  4RJW A;  1QJ9 A;  2QTK A;  2YNK A;  4QQ1 A;  1BXW A;  1MM4 A;  3PRN A;  1IZN A;  3AAA A;  2KC0 A;  2KXP A;  3AA6 A;  8PRN A;  3AAE A;  4RJX A;  4AZL A;  1MPF A;  2XE3 A;  4JFB A;  4KR4 A;  2F1T A;  1ZHY A;  5T5F A;  3EMN X;  2FGQ X;  2JMM A;  2Y0K A;  3LK2 B;  3AA1 A;  2KZ7 B;  2MHL A;  3PQS A;  1HXU A;  2W81 C;  1Q9F A;  2J1N A;  1G90 A;  4B61 A;  3LK4 1;  1BH3 A;  5GV0 A;  3JTY A;  4Z3T A;  4D5U A;  4FES A;  2YPV A;  4O3X B;  3SYS A;  4C69 X;  1QJ8 A;  4KRA A;  4XNL A;  4O3Y A;  4AYN A;  3TZG A;  3VE2 A;  4GCS A;  4O4U A;  1IZN B;  5PRN A;  3AAA B;  4N58 A;  5DL8 A;  2N2L A;  2KXP B;  3AA6 B;  3O0E A;  3AAE B;  5AFU L;  3VZW X;  1ZHZ A;  1E54 A;  2ODJ A;  1ZHW A;  3WI4 A;  3POR A;  4FT6 A;  4FRX A;  3AA0 A;  4G75 A;  3NSG A;  2XMX A;  3SY9 A;  3AA1 B;  4F4B A;  2POR A;  4LSI A;  2J4U P;  1H6S 1;  2GE4 A;  2MNH A;  1PHO A;  1GFM A;  4N59 A;  1Q9G A;  3VE1 A;  1P4T A;  4D65 A;  4KR8 A;  3GP6 A;  5IYU A;  1GFQ A;  2ZLD A;  3T0S A;  4E1S A;  4GF4 A;  4AKR A;  3V8U A;  3VZT X;  2XG6 A;  2M07 A;  4O3W A;  1OPF A;  1YS5 A;  5D5D A;  4E1T A;  2Y2X A;  5DL5 A;  3SYB A;  4AYI D;  3AA0 B;  2KDY A;  3QRC A;  1MM5 A;  5G26 A;  3K19 A;  3VZU X;  3LK4 2;  3SZV A;  3T20 A;  3HOL A;  2N2M A;  4AKM A;  4AYD C;  4RL9 A;  5AFU K;  3PQU A;  4LSH A;  1HXT A;  2XTR A;  4AYM C;  5ADX L;  3KVD D;  2M06 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...