5IYUA

Alge_cim
Total Genus 125
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
454
structure length
429
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Alginate production protein AlgE
publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
total genus 125
structure length 429
sequence length 454
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5iyuA00
4XNLA 3RBHA 5IYUA 4AFKA 4B61A 4AZLA 4XNKA 5D5DA
chains in the Genus database with same CATH superfamily
3T24A 2R4LA 4JFBA 3SYBA 1HXUA 2K0LA 5FVNA 5G39A 1GFOA 3NJTA 2Y7SA 5G3AA 1GFQA 5E79O 5GV0A 1ZHXA 2X9KA 3KZIO 4FMSA 4K3BA 4PUXA 5DL8A 4GCQA 1ZHYA 1ZHTA 2R4OA 4O3WA 3UAQA 4FRXA 2W80C 4C69X 3VY9X 5GTIO 1ZHWA 4U9CA 4C4VB 1THQA 3SYSA 3AAAB 4N59A 4N75A 4FSPA 3SZVA 1GFNA 4FZNA 4BUMX 1H6S1 5KAFO 3EMNX 4E1TA 4D64A 4FZLA 5DL5A 3FYXA 4N74A 6PRNA 3DA3A 2WJQA 2IWVA 2O4VA 5IYUA 2KXPA 1HXTA 3JTYA 4KR4A 4AKRB 3AA0A 2X27X 3WI5A 2XE3A 4PR7A 3NSGA 3DA4A 3QRCA 4AKRA 3G7GA 2KZ7A 2MNHA 1Q9FA 2F1CX 2LFUA 2PORA 2XE5A 1T1LA 3V8UA 2M07A 4XNLA 2XE2A 3TZGA 4RL9A 4RLBA 4KR8A 4G76A 2YNKA 5B5EO 1OSMA 3T0SA 3UPGA 3PRNA 3BRYA 3LK2A 3PF1A 7PRNA 3VZWX 1ZHZA 3HWBA 3LK3A 1QJ9A 3KVDD 3SY9A 3A0HO 3AAEA 4FRTA 3A0BO 3O0EA 2Y0HA 2ERVA 2ZLDA 3JCUO 3PQUA 4AYDC 4E1SA 5JDPA 5D5DA 4O3ZA 4PJ0O 3LK41 3AA7A 2J4UP 4GF4A 3POQA 4FESA 4O4XA 2J1NA 3POXA 4LSEA 1IZNA 2FGQX 3AA1A 5T5FA 2WVPA 4K3CA 1P4TA 1YS5A 2N2MA 3HW9A 2ODJA 4FQEA 4AFKA 4N58A 2W81C 3DWNA 5G38A 2KXPB 2LHFA 5PRNA 3C5OA 5TISO 4FZMA 4QQ1A 2F1VA 4AKMA 3AA0B 4O3XB 5KAIO 3VE2A 2IWWA 2XTQA 2XMXA 3SZDA 3WI4A 3AA6A 1MPFA 2KZ7B 3QRAA 1QJ8A 3A2SX 1MM4A 5AFUL 1GFPA 2MHLA 4FOZA 4D5UA 4GHBA 3PGRA 2KDYA 4FSOA 5H2FO 3HOLA 4RJWA 4AYID 3BRZA 1T16A 2PRNA 4JCHA 5AFUK 4CTDA 4RLCA 3LK2B 4RJXA 2FGRA 3PQSA 2GE4A 4GCSA 4IL6O 4UB8O 4AYNA 2ZFGA 4KRAA 3RBHA 1PRNA 3LK3B 4AYEC 4D65A 4FT6A 2OMFA 4LSHA 3POUA 3AAEB 1BT9A 1MM5A 2M06A 4O4UA 2R88A 5DL7A 5B66O 2YPVA 3PORA 1BH3A 3AA7B 3PGSA 1E54A 2R4PA 2R4NA 4C4VA 5ADXK 4UB6O 3AAAA 2QTKA 3K19A 2N2LA 1ORMA 3LK42 1IZNB 2JMMA 2KC0A 2Y2XA 3AA1B 4Z3TA 1G90A 4C00A 4G75A 3VZTX 4F4BA 1QJPA 1OPFA 4LSIA 1PHOA 3BS0A 4O49A 2R89A 1Q9GA 3DWOX 3GP6A 4LSFA 1GFMA 2XE1A 3HOEA 2JQYA 3DZMA 3VY8X 2Y0LA 4AYMC 3VZUX 2K4TA 4FUVA 4XNKA 3AA6B 5ADXL 1HXXA 1S5LO 2WJRA 2R8AA 5G26A 2Y0KA 4GCPA 5EE2A 3SY7A 4O3YA 3VE1A 5GTHO 2AXTO 2XG6A 8PRNA 5DL6A 2XTRA 4B61A 4AUIA 4AZLA 3T20A 2F1TA 1BXWA 3WU2O 3PGUA 3UU2A
chains in the Genus database with same CATH topology
3T24A 4JFBA 3SYBA 1HXUA 2K0LA 5FVNA 1GFOA 2Y7SA 1GFQA 5GV0A 1ZHXA 4PUXA 4FMSA 5DL8A 4GCQA 1ZHYA 1ZHTA 4O3WA 3UAQA 4FRXA 2W80C 4C69X 3VY9X 1ZHWA 4U9CA 1THQA 3SYSA 3AAAB 4N59A 3SZVA 4FSPA 1GFNA 4FZNA 4BUMX 1H6S1 4E1TA 3EMNX 4D64A 4FZLA 5DL5A 3FYXA 6PRNA 3DA3A 2O4VA 5IYUA 2KXPA 1HXTA 3JTYA 4KR4A 4AKRB 3AA0A 2X27X 3WI5A 2XE3A 3NSGA 3DA4A 3QRCA 3G7GA 2KZ7A 2MNHA 1Q9FA 2LFUA 2PORA 2XE5A 3V8UA 2M07A 4XNLA 2XE2A 3TZGA 4RL9A 4RLBA 4KR8A 4G76A 2YNKA 1OSMA 3T0SA 3UPGA 3PRNA 3LK2A 7PRNA 3VZWX 1ZHZA 3HWBA 3LK3A 1QJ9A 3KVDD 3SY9A 4FRTA 3AAEA 3O0EA 2Y0HA 2ERVA 2ZLDA 4E1SA 3PQUA 4AYDC 5JDPA 2J4UP 5D5DA 4O3ZA 3LK41 3AA7A 4GF4A 3POQA 4FESA 4O4XA 2J1NA 3POXA 4LSEA 1IZNA 2FGQX 3AA1A 5T5FA 1P4TA 1YS5A 2N2MA 3HW9A 2ODJA 4AFKA 4N58A 2W81C 5PRNA 2KXPB 2LHFA 3C5OA 4FZMA 4QQ1A 2F1VA 4AKMA 3AA0B 4O3XB 3VE2A 2XTQA 2XMXA 3SZDA 3WI4A 3AA6A 1MPFA 2KZ7B 3QRAA 1QJ8A 3A2SX 1MM4A 5AFUL 1GFPA 2MHLA 4FOZA 4D5UA 4GHBA 2KDYA 4FSOA 3HOLA 4RJWA 4AYID 2PRNA 4JCHA 5AFUK 4RLCA 3LK2B 4RJXA 2FGRA 3PQSA 2GE4A 4GCSA 4AYNA 2ZFGA 4KRAA 3RBHA 1PRNA 3LK3B 4AYEC 4D65A 4FT6A 2OMFA 4LSHA 3POUA 3AAEB 1BT9A 1MM5A 2M06A 4O4UA 5DL7A 2YPVA 3PORA 1BH3A 3AA7B 1E54A 5ADXK 3AAAA 2QTKA 3K19A 2N2LA 1ORMA 3LK42 1IZNB 2JMMA 2KC0A 2Y2XA 3AA1B 4Z3TA 1G90A 4G75A 3VZTX 4F4BA 1QJPA 1OPFA 4LSIA 1PHOA 4O49A 1Q9GA 3GP6A 4LSFA 1GFMA 2XE1A 3HOEA 3VY8X 2Y0LA 4AYMC 3VZUX 2K4TA 4FUVA 4XNKA 3AA6B 5ADXL 1HXXA 4AKRA 5G26A 2Y0KA 4GCPA 5EE2A 3SY7A 4O3YA 3VE1A 2XG6A 8PRNA 5DL6A 2XTRA 4B61A 4AUIA 4AZLA 3T20A 2F1TA 1BXWA 3UU2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNL A;  3RBH A;  5IYU A;  4AFK A;  4B61 A;  4AZL A;  4XNK A;  5D5D A; 
#chains in the Genus database with same CATH topology
 3T24 A;  2R4L A;  4JFB A;  3SYB A;  1HXU A;  2K0L A;  5FVN A;  5G39 A;  1GFO A;  3NJT A;  2Y7S A;  5G3A A;  1GFQ A;  5E79 O;  5GV0 A;  1ZHX A;  2X9K A;  3KZI O;  4FMS A;  4K3B A;  4PUX A;  5DL8 A;  4GCQ A;  1ZHY A;  1ZHT A;  2R4O A;  4O3W A;  3UAQ A;  4FRX A;  2W80 C;  4C69 X;  3VY9 X;  5GTI O;  1ZHW A;  4U9C A;  4C4V B;  1THQ A;  3SYS A;  3AAA B;  4N59 A;  4N75 A;  4FSP A;  3SZV A;  1GFN A;  4FZN A;  4BUM X;  1H6S 1;  5KAF O;  3EMN X;  4E1T A;  4D64 A;  4FZL A;  5DL5 A;  3FYX A;  4N74 A;  6PRN A;  3DA3 A;  2WJQ A;  2IWV A;  2O4V A;  5IYU A;  2KXP A;  1HXT A;  3JTY A;  4KR4 A;  4AKR B;  3AA0 A;  2X27 X;  3WI5 A;  2XE3 A;  4PR7 A;  3NSG A;  3DA4 A;  3QRC A;  4AKR A;  3G7G A;  2KZ7 A;  2MNH A;  1Q9F A;  2F1C X;  2LFU A;  2POR A;  2XE5 A;  1T1L A;  3V8U A;  2M07 A;  4XNL A;  2XE2 A;  3TZG A;  4RL9 A;  4RLB A;  4KR8 A;  4G76 A;  2YNK A;  5B5E O;  1OSM A;  3T0S A;  3UPG A;  3PRN A;  3BRY A;  3LK2 A;  3PF1 A;  7PRN A;  3VZW X;  1ZHZ A;  3HWB A;  3LK3 A;  1QJ9 A;  3KVD D;  3SY9 A;  3A0H O;  3AAE A;  4FRT A;  3A0B O;  3O0E A;  2Y0H A;  2ERV A;  2ZLD A;  3JCU O;  3PQU A;  4AYD C;  4E1S A;  5JDP A;  5D5D A;  4O3Z A;  4PJ0 O;  3LK4 1;  3AA7 A;  2J4U P;  4GF4 A;  3POQ A;  4FES A;  4O4X A;  2J1N A;  3POX A;  4LSE A;  1IZN A;  2FGQ X;  3AA1 A;  5T5F A;  2WVP A;  4K3C A;  1P4T A;  1YS5 A;  2N2M A;  3HW9 A;  2ODJ A;  4FQE A;  4AFK A;  4N58 A;  2W81 C;  3DWN A;  5G38 A;  2KXP B;  2LHF A;  5PRN A;  3C5O A;  5TIS O;  4FZM A;  4QQ1 A;  2F1V A;  4AKM A;  3AA0 B;  4O3X B;  5KAI O;  3VE2 A;  2IWW A;  2XTQ A;  2XMX A;  3SZD A;  3WI4 A;  3AA6 A;  1MPF A;  2KZ7 B;  3QRA A;  1QJ8 A;  3A2S X;  1MM4 A;  5AFU L;  1GFP A;  2MHL A;  4FOZ A;  4D5U A;  4GHB A;  3PGR A;  2KDY A;  4FSO A;  5H2F O;  3HOL A;  4RJW A;  4AYI D;  3BRZ A;  1T16 A;  2PRN A;  4JCH A;  5AFU K;  4CTD A;  4RLC A;  3LK2 B;  4RJX A;  2FGR A;  3PQS A;  2GE4 A;  4GCS A;  4IL6 O;  4UB8 O;  4AYN A;  2ZFG A;  4KRA A;  3RBH A;  1PRN A;  3LK3 B;  4AYE C;  4D65 A;  4FT6 A;  2OMF A;  4LSH A;  3POU A;  3AAE B;  1BT9 A;  1MM5 A;  2M06 A;  4O4U A;  2R88 A;  5DL7 A;  5B66 O;  2YPV A;  3POR A;  1BH3 A;  3AA7 B;  3PGS A;  1E54 A;  2R4P A;  2R4N A;  4C4V A;  5ADX K;  4UB6 O;  3AAA A;  2QTK A;  3K19 A;  2N2L A;  1ORM A;  3LK4 2;  1IZN B;  2JMM A;  2KC0 A;  2Y2X A;  3AA1 B;  4Z3T A;  1G90 A;  4C00 A;  4G75 A;  3VZT X;  4F4B A;  1QJP A;  1OPF A;  4LSI A;  1PHO A;  3BS0 A;  4O49 A;  2R89 A;  1Q9G A;  3DWO X;  3GP6 A;  4LSF A;  1GFM A;  2XE1 A;  3HOE A;  2JQY A;  3DZM A;  3VY8 X;  2Y0L A;  4AYM C;  3VZU X;  2K4T A;  4FUV A;  4XNK A;  3AA6 B;  5ADX L;  1HXX A;  1S5L O;  2WJR A;  2R8A A;  5G26 A;  2Y0K A;  4GCP A;  5EE2 A;  3SY7 A;  4O3Y A;  3VE1 A;  5GTH O;  2AXT O;  2XG6 A;  8PRN A;  5DL6 A;  2XTR A;  4B61 A;  4AUI A;  4AZL A;  3T20 A;  2F1T A;  1BXW A;  3WU2 O;  3PGU A;  3UU2 A; 
#chains in the Genus database with same CATH homology
 3T24 A;  4JFB A;  3SYB A;  1HXU A;  2K0L A;  5FVN A;  1GFO A;  2Y7S A;  1GFQ A;  5GV0 A;  1ZHX A;  4PUX A;  4FMS A;  5DL8 A;  4GCQ A;  1ZHY A;  1ZHT A;  4O3W A;  3UAQ A;  4FRX A;  2W80 C;  4C69 X;  3VY9 X;  1ZHW A;  4U9C A;  1THQ A;  3SYS A;  3AAA B;  4N59 A;  3SZV A;  4FSP A;  1GFN A;  4FZN A;  4BUM X;  1H6S 1;  4E1T A;  3EMN X;  4D64 A;  4FZL A;  5DL5 A;  3FYX A;  6PRN A;  3DA3 A;  2O4V A;  5IYU A;  2KXP A;  1HXT A;  3JTY A;  4KR4 A;  4AKR B;  3AA0 A;  2X27 X;  3WI5 A;  2XE3 A;  3NSG A;  3DA4 A;  3QRC A;  3G7G A;  2KZ7 A;  2MNH A;  1Q9F A;  2LFU A;  2POR A;  2XE5 A;  3V8U A;  2M07 A;  4XNL A;  2XE2 A;  3TZG A;  4RL9 A;  4RLB A;  4KR8 A;  4G76 A;  2YNK A;  1OSM A;  3T0S A;  3UPG A;  3PRN A;  3LK2 A;  7PRN A;  3VZW X;  1ZHZ A;  3HWB A;  3LK3 A;  1QJ9 A;  3KVD D;  3SY9 A;  4FRT A;  3AAE A;  3O0E A;  2Y0H A;  2ERV A;  2ZLD A;  4E1S A;  3PQU A;  4AYD C;  5JDP A;  2J4U P;  5D5D A;  4O3Z A;  3LK4 1;  3AA7 A;  4GF4 A;  3POQ A;  4FES A;  4O4X A;  2J1N A;  3POX A;  4LSE A;  1IZN A;  2FGQ X;  3AA1 A;  5T5F A;  1P4T A;  1YS5 A;  2N2M A;  3HW9 A;  2ODJ A;  4AFK A;  4N58 A;  2W81 C;  5PRN A;  2KXP B;  2LHF A;  3C5O A;  4FZM A;  4QQ1 A;  2F1V A;  4AKM A;  3AA0 B;  4O3X B;  3VE2 A;  2XTQ A;  2XMX A;  3SZD A;  3WI4 A;  3AA6 A;  1MPF A;  2KZ7 B;  3QRA A;  1QJ8 A;  3A2S X;  1MM4 A;  5AFU L;  1GFP A;  2MHL A;  4FOZ A;  4D5U A;  4GHB A;  2KDY A;  4FSO A;  3HOL A;  4RJW A;  4AYI D;  2PRN A;  4JCH A;  5AFU K;  4RLC A;  3LK2 B;  4RJX A;  2FGR A;  3PQS A;  2GE4 A;  4GCS A;  4AYN A;  2ZFG A;  4KRA A;  3RBH A;  1PRN A;  3LK3 B;  4AYE C;  4D65 A;  4FT6 A;  2OMF A;  4LSH A;  3POU A;  3AAE B;  1BT9 A;  1MM5 A;  2M06 A;  4O4U A;  5DL7 A;  2YPV A;  3POR A;  1BH3 A;  3AA7 B;  1E54 A;  5ADX K;  3AAA A;  2QTK A;  3K19 A;  2N2L A;  1ORM A;  3LK4 2;  1IZN B;  2JMM A;  2KC0 A;  2Y2X A;  3AA1 B;  4Z3T A;  1G90 A;  4G75 A;  3VZT X;  4F4B A;  1QJP A;  1OPF A;  4LSI A;  1PHO A;  4O49 A;  1Q9G A;  3GP6 A;  4LSF A;  1GFM A;  2XE1 A;  3HOE A;  3VY8 X;  2Y0L A;  4AYM C;  3VZU X;  2K4T A;  4FUV A;  4XNK A;  3AA6 B;  5ADX L;  1HXX A;  4AKR A;  5G26 A;  2Y0K A;  4GCP A;  5EE2 A;  3SY7 A;  4O3Y A;  3VE1 A;  2XG6 A;  8PRN A;  5DL6 A;  2XTR A;  4B61 A;  4AUI A;  4AZL A;  3T20 A;  2F1T A;  1BXW A;  3UU2 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...