5IYUA

Alge_cim
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
454
structure length
429
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Pseudomonas aeruginosa pao1
publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
molecule keywords Alginate production protein AlgE
total genus 125
structure length 429
sequence length 454
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 5iyuA00
4B61A 4XNLA 3RBHA 5IYUA 4AFKA 4AZLA 5D5DA 4XNKA
chains in the Genus database with same CATH superfamily
4O4XA 3O0EA 3TZGA 4FRXA 3WU2O 4JFBA 4K3CA 1OSMA 1GFMA 5FVNA 3VE2A 4FT6A 3UPGA 5EE2A 4C4VB 3LK2B 3PQUA 4RLBA 1BXWA 1Q9FA 1ZHTA 2FGQX 2J1NA 4AFKA 1MM5A 8PRNA 2Y0KA 1P4TA 4C69X 3T20A 4GHBA 3A0HO 3WI5A 4O3WA 2R4LA 2JQYA 5T5FA 2GE4A 3LK41 2K4TA 2IWWA 1OPFA 3DA3A 3POXA 3VZWX 2XTQA 3SYSA 1MM4A 1Q9GA 2R88A 3QRCA 3AA6B 1GFOA 1ZHZA 2FGRA 4O4UA 4AKRB 3PORA 3SY7A 2R89A 2LHFA 5AFUL 2PORA 2PRNA 2IWVA 2LFUA 1T1LA 2MHLA 2OMFA 3SZVA 4KR8A 4O3XB 3PGSA 4AUIA 3AA0B 3LK2A 4FOZA 1HXXA 5B66O 3WI4A 3EMNX 4K3BA 4RJXA 5G3AA 3VY9X 1ZHXA 4FMSA 3UU2A 5GTIO 4FSPA 2M06A 4FSOA 2QTKA 1THQA 3PF1A 3NSGA 2ERVA 2X9KA 2Y0LA 3C5OA 3HWBA 3QRAA 5G39A 3G7GA 1GFQA 2YNKA 3JCUO 3T24A 4AYEC 4UB6O 4KR4A 1QJ8A 3AA6A 4AKRA 2ODJA 4RJWA 4KRAA 4XNLA 2XE1A 4UB8O 3BS0A 4FZMA 2O4VA 1T16A 2Y7SA 3FYXA 3DZMA 3SY9A 4FESA 3DWOX 4E1TA 4RLCA 2XG6A 2WVPA 3LK42 5PRNA 4AKMA 4B61A 3AA0A 3AAEA 5GV0A 4AYMC 4IL6O 4QQ1A 3DA4A 5ADXK 4N58A 4O49A 3BRYA 4FUVA 3AA7B 3PQSA 4N59A 4E1SA 3AAEB 4O3ZA 3HOEA 4AYDC 2KDYA 2Y0HA 5D5DA 4AYID 2R4PA 4N74A 3KVDD 3POQA 3V8UA 1GFPA 2XE5A 2N2LA 4GCQA 3AAAA 3HW9A 4GCSA 3T0SA 2ZFGA 1YS5A 2MNHA 2W80C 5GTHO 5AFUK 1HXUA 3A2SX 1G90A 3SZDA 1HXTA 1QJ9A 3JTYA 5G38A 4CTDA 2XE2A 3AAAB 1PHOA 3NJTA 4FRTA 4LSHA 4FZLA 4PJ0O 5KAIO 2W81C 1BH3A 4D64A 5ADXL 3VZTX 1GFNA 4C00A 3LK3B 4BUMX 3AA7A 5DL8A 5DL7A 5B5EO 3VE1A 2N2MA 4RL9A 4G75A 5E79O 5JDPA 2AXTO 2JMMA 4U9CA 3VY8X 2F1TA 2WJRA 3AA1A 1QJPA 3PGUA 4G76A 3RBHA 2F1VA 2M07A 4PR7A 1IZNA 5DL6A 5KAFO 2XE3A 5DL5A 6PRNA 2X27X 2KC0A 2J4UP 3GP6A 4FQEA 4PUXA 2F1CX 1BT9A 2ZLDA 2Y2XA 1ZHYA 3AA1B 3KZIO 2R8AA 1ORMA 2KXPA 7PRNA 5IYUA 4F4BA 1ZHWA 3A0BO 1IZNB 2YPVA 4GF4A 3UAQA 4AYNA 3VZUX 2WJQA 3DWNA 3LK3A 4D65A 1S5LO 4LSEA 2R4NA 4D5UA 1PRNA 4LSIA 2KZ7A 4AZLA 2KXPB 5TISO 1H6S1 2XMXA 4GCPA 5H2FO 3PGRA 4Z3TA 3POUA 2K0LA 4FZNA 1MPFA 3SYBA 3PRNA 3HOLA 4O3YA 3K19A 4N75A 2KZ7B 1E54A 2R4OA 2XTRA 3BRZA 4JCHA 5G26A 4LSFA 4XNKA 4C4VA
chains in the Genus database with same CATH topology
4O4XA 3O0EA 3TZGA 4FRXA 4JFBA 5FVNA 1OSMA 1GFMA 3VE2A 4FT6A 3UPGA 5EE2A 3LK2B 3PQUA 4RLBA 1BXWA 1Q9FA 1ZHTA 2FGQX 2J1NA 4AFKA 1MM5A 8PRNA 2Y0KA 1P4TA 4C69X 3T20A 4GHBA 3WI5A 4O3WA 5T5FA 2GE4A 3LK41 2K4TA 1OPFA 3DA3A 3POXA 3VZWX 2XTQA 3SYSA 1MM4A 1Q9GA 3QRCA 5JDPA 3AA6B 1GFOA 1ZHZA 2FGRA 4O4UA 4AKRB 3PORA 3SY7A 5AFUL 2LHFA 2PORA 2PRNA 2LFUA 2MHLA 2OMFA 3SZVA 4KR8A 4O3XB 4AUIA 3AA0B 3LK2A 4FOZA 1HXXA 3WI4A 3EMNX 3VY9X 4RJXA 1ZHXA 4FMSA 3UU2A 4FSPA 2M06A 4FSOA 2QTKA 1THQA 3NSGA 2ERVA 2Y0LA 3HWBA 3C5OA 3QRAA 3G7GA 1GFQA 2YNKA 3T24A 4AYEC 4KR4A 1QJ8A 3AA6A 4AKRA 2ODJA 4RJWA 4KRAA 4XNLA 2XE1A 4FZMA 2O4VA 2Y7SA 3FYXA 3SY9A 4FESA 4E1TA 4RLCA 2XG6A 3LK42 4B61A 5PRNA 3AA0A 3AAEA 5GV0A 4AYMC 4QQ1A 3DA4A 5ADXK 4N58A 4O49A 4FUVA 3AA7B 3PQSA 4N59A 4E1SA 3AAEB 4O3ZA 3HOEA 4AYDC 2KDYA 2Y0HA 5D5DA 4AYID 3KVDD 3POQA 3V8UA 1GFPA 2XE5A 2N2LA 4GCQA 3AAAA 3HW9A 4GCSA 3T0SA 2ZFGA 1YS5A 2MNHA 2W80C 5AFUK 1HXUA 3A2SX 1G90A 3SZDA 1HXTA 1QJ9A 3JTYA 2XE2A 3AAAB 1PHOA 4D64A 4FRTA 4LSHA 4FZLA 5ADXL 2W81C 1BH3A 3VZTX 1GFNA 3LK3B 4BUMX 3AA7A 5DL8A 5DL7A 3VE1A 2N2MA 4RL9A 4G75A 2JMMA 4U9CA 3VY8X 2F1TA 3AA1A 1QJPA 4G76A 3RBHA 2F1VA 2M07A 5DL6A 1IZNA 2XE3A 5DL5A 6PRNA 2X27X 2KC0A 2J4UP 3GP6A 4PUXA 1BT9A 2ZLDA 2Y2XA 1ZHYA 3AA1B 1ORMA 2KXPA 7PRNA 5IYUA 4F4BA 1ZHWA 1IZNB 2YPVA 4GF4A 3UAQA 4AYNA 3VZUX 3LK3A 4D65A 4LSEA 4D5UA 1PRNA 4LSIA 2KZ7A 4AZLA 2KXPB 1H6S1 2XMXA 4GCPA 4Z3TA 3POUA 2K0LA 4FZNA 1MPFA 3SYBA 3PRNA 3HOLA 4O3YA 3K19A 2KZ7B 1E54A 2XTRA 4JCHA 5G26A 4AKMA 4LSFA 4XNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B61 A;  4XNL A;  3RBH A;  5IYU A;  4AFK A;  4AZL A;  5D5D A;  4XNK A; 
#chains in the Genus database with same CATH topology
 4O4X A;  3O0E A;  3TZG A;  4FRX A;  3WU2 O;  4JFB A;  4K3C A;  1OSM A;  1GFM A;  5FVN A;  3VE2 A;  4FT6 A;  3UPG A;  5EE2 A;  4C4V B;  3LK2 B;  3PQU A;  4RLB A;  1BXW A;  1Q9F A;  1ZHT A;  2FGQ X;  2J1N A;  4AFK A;  1MM5 A;  8PRN A;  2Y0K A;  1P4T A;  4C69 X;  3T20 A;  4GHB A;  3A0H O;  3WI5 A;  4O3W A;  2R4L A;  2JQY A;  5T5F A;  2GE4 A;  3LK4 1;  2K4T A;  2IWW A;  1OPF A;  3DA3 A;  3POX A;  3VZW X;  2XTQ A;  3SYS A;  1MM4 A;  1Q9G A;  2R88 A;  3QRC A;  3AA6 B;  1GFO A;  1ZHZ A;  2FGR A;  4O4U A;  4AKR B;  3POR A;  3SY7 A;  2R89 A;  2LHF A;  5AFU L;  2POR A;  2PRN A;  2IWV A;  2LFU A;  1T1L A;  2MHL A;  2OMF A;  3SZV A;  4KR8 A;  4O3X B;  3PGS A;  4AUI A;  3AA0 B;  3LK2 A;  4FOZ A;  1HXX A;  5B66 O;  3WI4 A;  3EMN X;  4K3B A;  4RJX A;  5G3A A;  3VY9 X;  1ZHX A;  4FMS A;  3UU2 A;  5GTI O;  4FSP A;  2M06 A;  4FSO A;  2QTK A;  1THQ A;  3PF1 A;  3NSG A;  2ERV A;  2X9K A;  2Y0L A;  3C5O A;  3HWB A;  3QRA A;  5G39 A;  3G7G A;  1GFQ A;  2YNK A;  3JCU O;  3T24 A;  4AYE C;  4UB6 O;  4KR4 A;  1QJ8 A;  3AA6 A;  4AKR A;  2ODJ A;  4RJW A;  4KRA A;  4XNL A;  2XE1 A;  4UB8 O;  3BS0 A;  4FZM A;  2O4V A;  1T16 A;  2Y7S A;  3FYX A;  3DZM A;  3SY9 A;  4FES A;  3DWO X;  4E1T A;  4RLC A;  2XG6 A;  2WVP A;  3LK4 2;  5PRN A;  4AKM A;  4B61 A;  3AA0 A;  3AAE A;  5GV0 A;  4AYM C;  4IL6 O;  4QQ1 A;  3DA4 A;  5ADX K;  4N58 A;  4O49 A;  3BRY A;  4FUV A;  3AA7 B;  3PQS A;  4N59 A;  4E1S A;  3AAE B;  4O3Z A;  3HOE A;  4AYD C;  2KDY A;  2Y0H A;  5D5D A;  4AYI D;  2R4P A;  4N74 A;  3KVD D;  3POQ A;  3V8U A;  1GFP A;  2XE5 A;  2N2L A;  4GCQ A;  3AAA A;  3HW9 A;  4GCS A;  3T0S A;  2ZFG A;  1YS5 A;  2MNH A;  2W80 C;  5GTH O;  5AFU K;  1HXU A;  3A2S X;  1G90 A;  3SZD A;  1HXT A;  1QJ9 A;  3JTY A;  5G38 A;  4CTD A;  2XE2 A;  3AAA B;  1PHO A;  3NJT A;  4FRT A;  4LSH A;  4FZL A;  4PJ0 O;  5KAI O;  2W81 C;  1BH3 A;  4D64 A;  5ADX L;  3VZT X;  1GFN A;  4C00 A;  3LK3 B;  4BUM X;  3AA7 A;  5DL8 A;  5DL7 A;  5B5E O;  3VE1 A;  2N2M A;  4RL9 A;  4G75 A;  5E79 O;  5JDP A;  2AXT O;  2JMM A;  4U9C A;  3VY8 X;  2F1T A;  2WJR A;  3AA1 A;  1QJP A;  3PGU A;  4G76 A;  3RBH A;  2F1V A;  2M07 A;  4PR7 A;  1IZN A;  5DL6 A;  5KAF O;  2XE3 A;  5DL5 A;  6PRN A;  2X27 X;  2KC0 A;  2J4U P;  3GP6 A;  4FQE A;  4PUX A;  2F1C X;  1BT9 A;  2ZLD A;  2Y2X A;  1ZHY A;  3AA1 B;  3KZI O;  2R8A A;  1ORM A;  2KXP A;  7PRN A;  5IYU A;  4F4B A;  1ZHW A;  3A0B O;  1IZN B;  2YPV A;  4GF4 A;  3UAQ A;  4AYN A;  3VZU X;  2WJQ A;  3DWN A;  3LK3 A;  4D65 A;  1S5L O;  4LSE A;  2R4N A;  4D5U A;  1PRN A;  4LSI A;  2KZ7 A;  4AZL A;  2KXP B;  5TIS O;  1H6S 1;  2XMX A;  4GCP A;  5H2F O;  3PGR A;  4Z3T A;  3POU A;  2K0L A;  4FZN A;  1MPF A;  3SYB A;  3PRN A;  3HOL A;  4O3Y A;  3K19 A;  4N75 A;  2KZ7 B;  1E54 A;  2R4O A;  2XTR A;  3BRZ A;  4JCH A;  5G26 A;  4LSF A;  4XNK A;  4C4V A; 
#chains in the Genus database with same CATH homology
 4O4X A;  3O0E A;  3TZG A;  4FRX A;  4JFB A;  5FVN A;  1OSM A;  1GFM A;  3VE2 A;  4FT6 A;  3UPG A;  5EE2 A;  3LK2 B;  3PQU A;  4RLB A;  1BXW A;  1Q9F A;  1ZHT A;  2FGQ X;  2J1N A;  4AFK A;  1MM5 A;  8PRN A;  2Y0K A;  1P4T A;  4C69 X;  3T20 A;  4GHB A;  3WI5 A;  4O3W A;  5T5F A;  2GE4 A;  3LK4 1;  2K4T A;  1OPF A;  3DA3 A;  3POX A;  3VZW X;  2XTQ A;  3SYS A;  1MM4 A;  1Q9G A;  3QRC A;  5JDP A;  3AA6 B;  1GFO A;  1ZHZ A;  2FGR A;  4O4U A;  4AKR B;  3POR A;  3SY7 A;  5AFU L;  2LHF A;  2POR A;  2PRN A;  2LFU A;  2MHL A;  2OMF A;  3SZV A;  4KR8 A;  4O3X B;  4AUI A;  3AA0 B;  3LK2 A;  4FOZ A;  1HXX A;  3WI4 A;  3EMN X;  3VY9 X;  4RJX A;  1ZHX A;  4FMS A;  3UU2 A;  4FSP A;  2M06 A;  4FSO A;  2QTK A;  1THQ A;  3NSG A;  2ERV A;  2Y0L A;  3HWB A;  3C5O A;  3QRA A;  3G7G A;  1GFQ A;  2YNK A;  3T24 A;  4AYE C;  4KR4 A;  1QJ8 A;  3AA6 A;  4AKR A;  2ODJ A;  4RJW A;  4KRA A;  4XNL A;  2XE1 A;  4FZM A;  2O4V A;  2Y7S A;  3FYX A;  3SY9 A;  4FES A;  4E1T A;  4RLC A;  2XG6 A;  3LK4 2;  4B61 A;  5PRN A;  3AA0 A;  3AAE A;  5GV0 A;  4AYM C;  4QQ1 A;  3DA4 A;  5ADX K;  4N58 A;  4O49 A;  4FUV A;  3AA7 B;  3PQS A;  4N59 A;  4E1S A;  3AAE B;  4O3Z A;  3HOE A;  4AYD C;  2KDY A;  2Y0H A;  5D5D A;  4AYI D;  3KVD D;  3POQ A;  3V8U A;  1GFP A;  2XE5 A;  2N2L A;  4GCQ A;  3AAA A;  3HW9 A;  4GCS A;  3T0S A;  2ZFG A;  1YS5 A;  2MNH A;  2W80 C;  5AFU K;  1HXU A;  3A2S X;  1G90 A;  3SZD A;  1HXT A;  1QJ9 A;  3JTY A;  2XE2 A;  3AAA B;  1PHO A;  4D64 A;  4FRT A;  4LSH A;  4FZL A;  5ADX L;  2W81 C;  1BH3 A;  3VZT X;  1GFN A;  3LK3 B;  4BUM X;  3AA7 A;  5DL8 A;  5DL7 A;  3VE1 A;  2N2M A;  4RL9 A;  4G75 A;  2JMM A;  4U9C A;  3VY8 X;  2F1T A;  3AA1 A;  1QJP A;  4G76 A;  3RBH A;  2F1V A;  2M07 A;  5DL6 A;  1IZN A;  2XE3 A;  5DL5 A;  6PRN A;  2X27 X;  2KC0 A;  2J4U P;  3GP6 A;  4PUX A;  1BT9 A;  2ZLD A;  2Y2X A;  1ZHY A;  3AA1 B;  1ORM A;  2KXP A;  7PRN A;  5IYU A;  4F4B A;  1ZHW A;  1IZN B;  2YPV A;  4GF4 A;  3UAQ A;  4AYN A;  3VZU X;  3LK3 A;  4D65 A;  4LSE A;  4D5U A;  1PRN A;  4LSI A;  2KZ7 A;  4AZL A;  2KXP B;  1H6S 1;  2XMX A;  4GCP A;  4Z3T A;  3POU A;  2K0L A;  4FZN A;  1MPF A;  3SYB A;  3PRN A;  3HOL A;  4O3Y A;  3K19 A;  2KZ7 B;  1E54 A;  2XTR A;  4JCH A;  5G26 A;  4AKM A;  4LSF A;  4XNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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