2ZFGA

Structure of ompf porin
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
340
structure length
339
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein F
publication title Crystal structures of the OmpF porin: function in a colicin translocon.
pubmed doi rcsb
source organism Escherichia coli
total genus 106
structure length 339
sequence length 340
ec nomenclature
pdb deposition date 2008-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2zfgA00
1GFPA 1PHOA 2Y0HA 1GFMA 3K19A 4LSHA 3HWBA 3NSGA 3HW9A 4KR4A 4GCPA 3UU2A 5DL7A 4KRAA 4FOZA 1BT9A 3SYSA 3SZDA 2O4VA 3JTYA 4FT6A 1HXTA 4FSOA 3VZTX 3WI5A 4LSFA 4D65A 3PORA 5PRNA 1H6S1 4RJWA 3UPGA 5DL6A 3WI4A 5DL5A 5DL8A 4GCSA 2Y2XA 2QTKA 3VY9X 1GFNA 1MPFA 4D64A 1HXXA 3POXA 4AUIA 4GCQA 1BH3A 1OPFA 3EMNX 4FMSA 2Y0KA 2ODJA 5JDPA 3O0EA 2XE5A 3PRNA 3A2SX 1HXUA 1GFOA 3VY8X 1GFQA 2XE2A 3VZUX 4LSEA 2J4UP 2ZLDA 3T20A 3T0SA 3SY9A 4JFBA 3POUA 3FYXA 4FRTA 4KR8A 6PRNA 2XE1A 2ZFGA 4FRXA 1OSMA 3VZWX 3SY7A 2PORA 4RJXA 4BUMX 5FVNA 4FSPA 3T24A 3SZVA 2OMFA 3POQA 3SYBA 7PRNA 2FGQX 2XG6A 1PRNA 2XE3A 2FGRA 4LSIA 1E54A 4D5UA 2Y0LA 8PRNA 4C69X 2PRNA 2K4TA 2J1NA
chains in the Genus database with same CATH superfamily
2MHLA 5G38A 3AA0B 3AAAB 1GFPA 1PHOA 2X9KA 2Y0HA 1GFMA 3K19A 4G76A 4LSHA 5TISO 2Y7SA 2X27X 4GF4A 3LK3B 1QJ9A 3HWBA 1P4TA 4K3CA 5G3AA 4RLCA 4AKRA 3NSGA 3BS0A 3HW9A 3DWNA 4KR4A 4GCPA 3UU2A 1IZNB 2KC0A 1QJ8A 2JQYA 2M07A 4KRAA 4O3YA 4IL6O 4O3WA 4FOZA 5DL7A 3VE2A 3LK2A 1BT9A 4PUXA 4UB8O 2KDYA 3SYSA 3V8UA 4AKMA 2W80C 3SZDA 4JCHA 2O4VA 3JTYA 4PJ0O 5G39A 4FT6A 1HXTA 3AAEA 4AZLA 3C5OA 4FSOA 2R4NA 1ZHXA 2KZ7B 3DWOX 3VE1A 3VZTX 3JCUO 3AA6A 5T5FA 3WI5A 2R89A 4Z3TA 5AFUL 4LSFA 4RL9A 1ZHYA 3TZGA 5B5EO 2F1TA 3HOEA 4XNKA 4D65A 2XTQA 1ZHWA 3PORA 3QRCA 5PRNA 4O3XB 2IWVA 3LK41 5ADXK 3BRYA 1H6S1 4RJWA 3UPGA 5DL6A 3PQSA 3WI4A 1QJPA 5DL5A 2KZ7A 5H2FO 5E79O 5DL8A 4F4BA 4GCSA 5D5DA 2Y2XA 2LHFA 2QTKA 4FESA 4N75A 4RLBA 4C4VA 5IYUA 4G75A 3VY9X 1GFNA 1MPFA 1YS5A 4D64A 3A0HO 3HOLA 1HXXA 4U9CA 3POXA 4O3ZA 4AUIA 3AA0A 3RBHA 2XMXA 3AAAA 4GCQA 1BH3A 1OPFA 4FZLA 2YPVA 3EMNX 3DA4A 2WVPA 2GE4A 1Q9FA 2ODJA 2Y0KA 1MM4A 3O0EA 4FMSA 2XE5A 4FUVA 3WU2O 5JDPA 3LK3A 2K0LA 3PRNA 4CTDA 2WJQA 2IWWA 3KZIO 4O49A 3QRAA 4K3BA 4FZNA 4N59A 2KXPB 4AYMC 2R4OA 1IZNA 3LK42 4C00A 3A2SX 3GP6A 3PGRA 1HXUA 1GFOA 2MNHA 3VY8X 1T1LA 1GFQA 2F1CX 4N74A 2XE2A 3VZUX 4AYEC 1G90A 4LSEA 2WJRA 1ORMA 4O4UA 1T16A 1Q9GA 2R8AA 2J4UP 3PGUA 4AFKA 2ZLDA 2W81C 1ZHTA 3G7GA 1ZHZA 3DZMA 3NJTA 3PF1A 4O4XA 1S5LO 4QQ1A 5KAFO 5KAIO 3SY9A 1BXWA 3T0SA 3AA7B 4AKRB 4JFBA 4N58A 3POUA 3FYXA 5GTHO 4FRTA 4KR8A 5AFUK 4PR7A 6PRNA 3T20A 4FZMA 2M06A 3LK2B 2XE1A 3BRZA 3KVDD 2ZFGA 4FRXA 4XNLA 1OSMA 5GTIO 3UAQA 3VZWX 4AYNA 3SY7A 5B66O 2YNKA 2PORA 2JMMA 3AAEB 4RJXA 4BUMX 5FVNA 4FSPA 2R4PA 4UB6O 3T24A 3AA6B 3SZVA 5ADXL 2OMFA 4GHBA 2F1VA 3POQA 3AA7A 3SYBA 3AA1B 2FGQX 2XG6A 7PRNA 2N2LA 5G26A 1PRNA 2XE3A 2FGRA 5GV0A 4LSIA 1E54A 4D5UA 1MM5A 3PQUA 4FQEA 4B61A 4E1TA 2KXPA 3PGSA 3DA3A 2AXTO 2LFUA 2Y0LA 3A0BO 5EE2A 4E1SA 2N2MA 4AYDC 4C4VB 1THQA 8PRNA 2ERVA 2XTRA 2R4LA 4AYID 2PRNA 2K4TA 3AA1A 2R88A 4C69X 2J1NA
chains in the Genus database with same CATH topology
2MHLA 3AA0B 3AAAB 1GFPA 1PHOA 2Y0HA 1GFMA 3K19A 4G76A 4LSHA 2Y7SA 2X27X 4GF4A 3LK3B 1QJ9A 3HWBA 1P4TA 4RLCA 4AKRA 3NSGA 3HW9A 4KR4A 4GCPA 3UU2A 1IZNB 2KC0A 1QJ8A 2M07A 4O3YA 4KRAA 5DL7A 3VE2A 4O3WA 4FOZA 3LK2A 1BT9A 4PUXA 3V8UA 2KDYA 3SYSA 4AKMA 2W80C 3SZDA 4JCHA 2O4VA 3JTYA 4FT6A 1HXTA 3AAEA 4AZLA 3C5OA 4FSOA 3VE1A 1ZHXA 2KZ7B 3VZTX 3AA6A 5T5FA 3WI5A 5AFUL 4Z3TA 4LSFA 4RL9A 1ZHYA 3TZGA 2F1TA 3HOEA 4XNKA 4D65A 2XTQA 1ZHWA 3PORA 3QRCA 5PRNA 4O3XB 3LK41 5ADXK 1H6S1 4RJWA 3UPGA 5DL6A 3PQSA 3WI4A 1QJPA 5DL5A 2KZ7A 5DL8A 4F4BA 4GCSA 5D5DA 2Y2XA 2LHFA 2QTKA 4FESA 5IYUA 4RLBA 4G75A 3VY9X 1GFNA 1MPFA 1YS5A 4D64A 3HOLA 1HXXA 4U9CA 3POXA 4O3ZA 4AUIA 3AA0A 3RBHA 2XMXA 3AAAA 4GCQA 1BH3A 1OPFA 4FZLA 2YPVA 3EMNX 3DA4A 4FMSA 2GE4A 1Q9FA 2ODJA 2Y0KA 1MM4A 3O0EA 4FUVA 2XE5A 5JDPA 3LK3A 2K0LA 3PRNA 4O49A 3QRAA 4FZNA 4N59A 2KXPB 4AYMC 1IZNA 3LK42 3A2SX 3GP6A 1HXUA 1GFOA 2MNHA 3VY8X 1GFQA 2XE2A 3VZUX 4AYEC 1G90A 4LSEA 1ORMA 4O4UA 1Q9GA 2J4UP 4AFKA 2ZLDA 2W81C 1ZHTA 3G7GA 1ZHZA 4O4XA 3T20A 3T0SA 4QQ1A 3SY9A 4AKRB 1BXWA 3AA7B 4JFBA 4N58A 3POUA 3FYXA 4FRTA 4KR8A 5AFUK 6PRNA 4FZMA 2M06A 3LK2B 2XE1A 3KVDD 4XNLA 2ZFGA 4FRXA 4AYNA 1OSMA 3UAQA 3VZWX 3SY7A 2YNKA 2PORA 2JMMA 3AAEB 4RJXA 4BUMX 5FVNA 4FSPA 3T24A 3AA6B 3SZVA 5ADXL 2OMFA 4GHBA 2F1VA 3POQA 3AA7A 3SYBA 3AA1B 2FGQX 2XG6A 7PRNA 2N2LA 5G26A 1PRNA 2XE3A 2FGRA 5GV0A 4LSIA 1E54A 4D5UA 1MM5A 3PQUA 4B61A 4E1TA 2KXPA 3DA3A 2LFUA 2Y0LA 5EE2A 4E1SA 2N2MA 4AYDC 1THQA 8PRNA 2ERVA 2XTRA 4AYID 4C69X 2PRNA 2K4TA 3AA1A 2J1NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GFP A;  1PHO A;  2Y0H A;  1GFM A;  3K19 A;  4LSH A;  3HWB A;  3NSG A;  3HW9 A;  4KR4 A;  4GCP A;  3UU2 A;  5DL7 A;  4KRA A;  4FOZ A;  1BT9 A;  3SYS A;  3SZD A;  2O4V A;  3JTY A;  4FT6 A;  1HXT A;  4FSO A;  3VZT X;  3WI5 A;  4LSF A;  4D65 A;  3POR A;  5PRN A;  1H6S 1;  4RJW A;  3UPG A;  5DL6 A;  3WI4 A;  5DL5 A;  5DL8 A;  4GCS A;  2Y2X A;  2QTK A;  3VY9 X;  1GFN A;  1MPF A;  4D64 A;  1HXX A;  3POX A;  4AUI A;  4GCQ A;  1BH3 A;  1OPF A;  3EMN X;  4FMS A;  2Y0K A;  2ODJ A;  5JDP A;  3O0E A;  2XE5 A;  3PRN A;  3A2S X;  1HXU A;  1GFO A;  3VY8 X;  1GFQ A;  2XE2 A;  3VZU X;  4LSE A;  2J4U P;  2ZLD A;  3T20 A;  3T0S A;  3SY9 A;  4JFB A;  3POU A;  3FYX A;  4FRT A;  4KR8 A;  6PRN A;  2XE1 A;  2ZFG A;  4FRX A;  1OSM A;  3VZW X;  3SY7 A;  2POR A;  4RJX A;  4BUM X;  5FVN A;  4FSP A;  3T24 A;  3SZV A;  2OMF A;  3POQ A;  3SYB A;  7PRN A;  2FGQ X;  2XG6 A;  1PRN A;  2XE3 A;  2FGR A;  4LSI A;  1E54 A;  4D5U A;  2Y0L A;  8PRN A;  4C69 X;  2PRN A;  2K4T A;  2J1N A; 
#chains in the Genus database with same CATH topology
 2MHL A;  5G38 A;  3AA0 B;  3AAA B;  1GFP A;  1PHO A;  2X9K A;  2Y0H A;  1GFM A;  3K19 A;  4G76 A;  4LSH A;  5TIS O;  2Y7S A;  2X27 X;  4GF4 A;  3LK3 B;  1QJ9 A;  3HWB A;  1P4T A;  4K3C A;  5G3A A;  4RLC A;  4AKR A;  3NSG A;  3BS0 A;  3HW9 A;  3DWN A;  4KR4 A;  4GCP A;  3UU2 A;  1IZN B;  2KC0 A;  1QJ8 A;  2JQY A;  2M07 A;  4KRA A;  4O3Y A;  4IL6 O;  4O3W A;  4FOZ A;  5DL7 A;  3VE2 A;  3LK2 A;  1BT9 A;  4PUX A;  4UB8 O;  2KDY A;  3SYS A;  3V8U A;  4AKM A;  2W80 C;  3SZD A;  4JCH A;  2O4V A;  3JTY A;  4PJ0 O;  5G39 A;  4FT6 A;  1HXT A;  3AAE A;  4AZL A;  3C5O A;  4FSO A;  2R4N A;  1ZHX A;  2KZ7 B;  3DWO X;  3VE1 A;  3VZT X;  3JCU O;  3AA6 A;  5T5F A;  3WI5 A;  2R89 A;  4Z3T A;  5AFU L;  4LSF A;  4RL9 A;  1ZHY A;  3TZG A;  5B5E O;  2F1T A;  3HOE A;  4XNK A;  4D65 A;  2XTQ A;  1ZHW A;  3POR A;  3QRC A;  5PRN A;  4O3X B;  2IWV A;  3LK4 1;  5ADX K;  3BRY A;  1H6S 1;  4RJW A;  3UPG A;  5DL6 A;  3PQS A;  3WI4 A;  1QJP A;  5DL5 A;  2KZ7 A;  5H2F O;  5E79 O;  5DL8 A;  4F4B A;  4GCS A;  5D5D A;  2Y2X A;  2LHF A;  2QTK A;  4FES A;  4N75 A;  4RLB A;  4C4V A;  5IYU A;  4G75 A;  3VY9 X;  1GFN A;  1MPF A;  1YS5 A;  4D64 A;  3A0H O;  3HOL A;  1HXX A;  4U9C A;  3POX A;  4O3Z A;  4AUI A;  3AA0 A;  3RBH A;  2XMX A;  3AAA A;  4GCQ A;  1BH3 A;  1OPF A;  4FZL A;  2YPV A;  3EMN X;  3DA4 A;  2WVP A;  2GE4 A;  1Q9F A;  2ODJ A;  2Y0K A;  1MM4 A;  3O0E A;  4FMS A;  2XE5 A;  4FUV A;  3WU2 O;  5JDP A;  3LK3 A;  2K0L A;  3PRN A;  4CTD A;  2WJQ A;  2IWW A;  3KZI O;  4O49 A;  3QRA A;  4K3B A;  4FZN A;  4N59 A;  2KXP B;  4AYM C;  2R4O A;  1IZN A;  3LK4 2;  4C00 A;  3A2S X;  3GP6 A;  3PGR A;  1HXU A;  1GFO A;  2MNH A;  3VY8 X;  1T1L A;  1GFQ A;  2F1C X;  4N74 A;  2XE2 A;  3VZU X;  4AYE C;  1G90 A;  4LSE A;  2WJR A;  1ORM A;  4O4U A;  1T16 A;  1Q9G A;  2R8A A;  2J4U P;  3PGU A;  4AFK A;  2ZLD A;  2W81 C;  1ZHT A;  3G7G A;  1ZHZ A;  3DZM A;  3NJT A;  3PF1 A;  4O4X A;  1S5L O;  4QQ1 A;  5KAF O;  5KAI O;  3SY9 A;  1BXW A;  3T0S A;  3AA7 B;  4AKR B;  4JFB A;  4N58 A;  3POU A;  3FYX A;  5GTH O;  4FRT A;  4KR8 A;  5AFU K;  4PR7 A;  6PRN A;  3T20 A;  4FZM A;  2M06 A;  3LK2 B;  2XE1 A;  3BRZ A;  3KVD D;  2ZFG A;  4FRX A;  4XNL A;  1OSM A;  5GTI O;  3UAQ A;  3VZW X;  4AYN A;  3SY7 A;  5B66 O;  2YNK A;  2POR A;  2JMM A;  3AAE B;  4RJX A;  4BUM X;  5FVN A;  4FSP A;  2R4P A;  4UB6 O;  3T24 A;  3AA6 B;  3SZV A;  5ADX L;  2OMF A;  4GHB A;  2F1V A;  3POQ A;  3AA7 A;  3SYB A;  3AA1 B;  2FGQ X;  2XG6 A;  7PRN A;  2N2L A;  5G26 A;  1PRN A;  2XE3 A;  2FGR A;  5GV0 A;  4LSI A;  1E54 A;  4D5U A;  1MM5 A;  3PQU A;  4FQE A;  4B61 A;  4E1T A;  2KXP A;  3PGS A;  3DA3 A;  2AXT O;  2LFU A;  2Y0L A;  3A0B O;  5EE2 A;  4E1S A;  2N2M A;  4AYD C;  4C4V B;  1THQ A;  8PRN A;  2ERV A;  2XTR A;  2R4L A;  4AYI D;  2PRN A;  2K4T A;  3AA1 A;  2R88 A;  4C69 X;  2J1N A; 
#chains in the Genus database with same CATH homology
 2MHL A;  3AA0 B;  3AAA B;  1GFP A;  1PHO A;  2Y0H A;  1GFM A;  3K19 A;  4G76 A;  4LSH A;  2Y7S A;  2X27 X;  4GF4 A;  3LK3 B;  1QJ9 A;  3HWB A;  1P4T A;  4RLC A;  4AKR A;  3NSG A;  3HW9 A;  4KR4 A;  4GCP A;  3UU2 A;  1IZN B;  2KC0 A;  1QJ8 A;  2M07 A;  4O3Y A;  4KRA A;  5DL7 A;  3VE2 A;  4O3W A;  4FOZ A;  3LK2 A;  1BT9 A;  4PUX A;  3V8U A;  2KDY A;  3SYS A;  4AKM A;  2W80 C;  3SZD A;  4JCH A;  2O4V A;  3JTY A;  4FT6 A;  1HXT A;  3AAE A;  4AZL A;  3C5O A;  4FSO A;  3VE1 A;  1ZHX A;  2KZ7 B;  3VZT X;  3AA6 A;  5T5F A;  3WI5 A;  5AFU L;  4Z3T A;  4LSF A;  4RL9 A;  1ZHY A;  3TZG A;  2F1T A;  3HOE A;  4XNK A;  4D65 A;  2XTQ A;  1ZHW A;  3POR A;  3QRC A;  5PRN A;  4O3X B;  3LK4 1;  5ADX K;  1H6S 1;  4RJW A;  3UPG A;  5DL6 A;  3PQS A;  3WI4 A;  1QJP A;  5DL5 A;  2KZ7 A;  5DL8 A;  4F4B A;  4GCS A;  5D5D A;  2Y2X A;  2LHF A;  2QTK A;  4FES A;  5IYU A;  4RLB A;  4G75 A;  3VY9 X;  1GFN A;  1MPF A;  1YS5 A;  4D64 A;  3HOL A;  1HXX A;  4U9C A;  3POX A;  4O3Z A;  4AUI A;  3AA0 A;  3RBH A;  2XMX A;  3AAA A;  4GCQ A;  1BH3 A;  1OPF A;  4FZL A;  2YPV A;  3EMN X;  3DA4 A;  4FMS A;  2GE4 A;  1Q9F A;  2ODJ A;  2Y0K A;  1MM4 A;  3O0E A;  4FUV A;  2XE5 A;  5JDP A;  3LK3 A;  2K0L A;  3PRN A;  4O49 A;  3QRA A;  4FZN A;  4N59 A;  2KXP B;  4AYM C;  1IZN A;  3LK4 2;  3A2S X;  3GP6 A;  1HXU A;  1GFO A;  2MNH A;  3VY8 X;  1GFQ A;  2XE2 A;  3VZU X;  4AYE C;  1G90 A;  4LSE A;  1ORM A;  4O4U A;  1Q9G A;  2J4U P;  4AFK A;  2ZLD A;  2W81 C;  1ZHT A;  3G7G A;  1ZHZ A;  4O4X A;  3T20 A;  3T0S A;  4QQ1 A;  3SY9 A;  4AKR B;  1BXW A;  3AA7 B;  4JFB A;  4N58 A;  3POU A;  3FYX A;  4FRT A;  4KR8 A;  5AFU K;  6PRN A;  4FZM A;  2M06 A;  3LK2 B;  2XE1 A;  3KVD D;  4XNL A;  2ZFG A;  4FRX A;  4AYN A;  1OSM A;  3UAQ A;  3VZW X;  3SY7 A;  2YNK A;  2POR A;  2JMM A;  3AAE B;  4RJX A;  4BUM X;  5FVN A;  4FSP A;  3T24 A;  3AA6 B;  3SZV A;  5ADX L;  2OMF A;  4GHB A;  2F1V A;  3POQ A;  3AA7 A;  3SYB A;  3AA1 B;  2FGQ X;  2XG6 A;  7PRN A;  2N2L A;  5G26 A;  1PRN A;  2XE3 A;  2FGR A;  5GV0 A;  4LSI A;  1E54 A;  4D5U A;  1MM5 A;  3PQU A;  4B61 A;  4E1T A;  2KXP A;  3DA3 A;  2LFU A;  2Y0L A;  5EE2 A;  4E1S A;  2N2M A;  4AYD C;  1THQ A;  8PRN A;  2ERV A;  2XTR A;  4AYI D;  4C69 X;  2PRN A;  2K4T A;  3AA1 A;  2J1N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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