5DL6A

Crystal structure of acinetobacter baumannii occab2
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
399
structure length
395
Chain Sequence
EGSFIDNSSVELTTRNFYFDRDYQYPAAKDWTQGFILKANSGYTEGTIGFGLDVLATAGFKLDADAEHGGTGNLPRDTRTNEPADSYGEIGVTAKAKMSQTELRIGTLMPMNPVLVASPARLLPQTYRGISLTSKDIKDFDLQAAYLDKVNHRDSTNYEKIKISGVNGRFKGAETDGLYYLGGNYQFNPALKLTAFYMDVDDLYNQTMVGALHQYKINDTTNFSSQLRYYRSRDDGQAKAGLVDNDLYHAHFELKHQNHKFIFGTFQHHGDTAFPYLTGGETGLLIDTWPGEFLNPKEKAYSFRYEYDFKEYVPGLCFMTRYTTGHNIYAPNLGGTNLKERETDFDLGYTVQSGWLKNLGLRARYAIYDNNMLSTANIKPVNETRINIDYTWKFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative porin for vanillate trafficking (VanP)
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
molecule tags Membrane protein
total genus 101
structure length 395
sequence length 399
ec nomenclature
pdb deposition date 2015-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl6A00
4FSOA 4KR4A 4FRTA 4GCQA 3VZUX 1HXXA 2XE1A 2K4TA 4LSIA 3A2SX 3WI5A 2J1NA 1GFPA 3O0EA 4JFBA 2ODJA 4RJXA 3T24A 1MPFA 2Y0HA 4AUIA 1PHOA 2Y0LA 8PRNA 2ZFGA 5DL7A 2Y2XA 4KR8A 1GFNA 2Y0KA 2FGQX 2PORA 1GFQA 2O4VA 6PRNA 1OSMA 5DL6A 2FGRA 3JTYA 4KRAA 3SY9A 2XE3A 4D64A 3SYSA 3HWBA 2XE5A 1BH3A 3UU2A 3POXA 3SZDA 1PRNA 4LSFA 1H6S1 3VY8X 4BUMX 4GCPA 3SZVA 3UPGA 1HXUA 3NSGA 4RJWA 3K19A 3SYBA 2J4UP 1OPFA 1E54A 1BT9A 7PRNA 4LSHA 2XG6A 4D65A 2PRNA 5FVNA 2XE2A 5JDPA 3WI4A 3PRNA 3VZTX 3T20A 4FSPA 4FT6A 3FYXA 1GFOA 4FOZA 4FRXA 3VY9X 3HW9A 4GCSA 4FMSA 2ZLDA 2QTKA 4C69X 3POQA 3T0SA 4D5UA 1GFMA 3SY7A 3PORA 1HXTA 3VZWX 3POUA 5DL5A 3EMNX 5PRNA 5DL8A 4LSEA 2OMFA
chains in the Genus database with same CATH superfamily
4O3XB 4FSOA 4KR4A 3BRZA 4AKMA 2R4PA 4FRTA 4GCQA 1ORMA 3BRYA 2JQYA 3PF1A 3LK42 3VZUX 1HXXA 2WJRA 3QRAA 4O3WA 4PJ0O 4RL9A 5AFUK 1QJ8A 2XE1A 3QRCA 2XMXA 2JMMA 2K4TA 2R89A 3DA4A 4O3ZA 1YS5A 5IYUA 2WJQA 5KAIO 2R8AA 3G7GA 3PQUA 3WU2O 2W81C 2KC0A 2LHFA 3DA3A 1THQA 4LSIA 3A2SX 3WI5A 4XNKA 3AA6A 4O4UA 2J1NA 2K0LA 1GFPA 3TZGA 3NJTA 4GF4A 3O0EA 5E79O 4JFBA 2ODJA 4RJXA 5G3AA 1MPFA 3T24A 4K3CA 2Y0HA 4AUIA 3AA6B 1PHOA 2AXTO 2R4NA 2Y0LA 4C00A 2ZFGA 4FZLA 5DL7A 8PRNA 3AAEA 3DWOX 2Y2XA 1IZNA 1GFNA 1T16A 4KR8A 4O4XA 2Y0KA 2FGQX 2PORA 4E1SA 1ZHWA 2KDYA 3PGUA 5ADXK 2IWWA 1GFQA 2O4VA 2XTQA 2YPVA 5EE2A 3AAEB 1OSMA 5DL6A 6PRNA 1IZNB 2FGRA 4K3BA 5B5EO 2X27X 3JTYA 4KRAA 3SY9A 4N75A 1ZHTA 2XE3A 3AAAA 4N74A 4U9CA 5D5DA 4D64A 4AYMC 3GP6A 2R88A 3SYSA 4Z3TA 2MNHA 3HWBA 2XE5A 2KZ7A 1BH3A 1P4TA 3UU2A 2N2LA 3POXA 3PQSA 3SZDA 1PRNA 4FZNA 4C4VA 4LSFA 4RLBA 1H6S1 2KZ7B 3LK2A 4FQEA 3VY8X 5AFUL 1QJPA 3A0BO 4BUMX 4GCPA 3SZVA 4C4VB 3UPGA 1HXUA 3NSGA 3HOLA 3LK2B 3HOEA 4IL6O 4RJWA 2MHLA 3KVDD 4G75A 3VE2A 3K19A 1T1LA 4O3YA 2R4LA 3SYBA 2J4UP 2F1VA 3DZMA 4AYDC 3V8UA 5G38A 2YNKA 4AYID 2KXPA 3AA0A 1OPFA 3A0HO 3C5OA 1BXWA 3PGRA 1E54A 1BT9A 4FZMA 5G26A 7PRNA 4PR7A 4LSHA 4F4BA 2XG6A 3LK41 4QQ1A 4RLCA 3DWNA 4D65A 2N2MA 4AYNA 5GTIO 5ADXL 5GTHO 2PRNA 3AAAB 2XTRA 5FVNA 2XE2A 3LK3A 4N58A 5GV0A 5JDPA 3WI4A 2F1CX 4PUXA 1G90A 3PRNA 3VZTX 3T20A 1MM5A 4FSPA 2M07A 1ZHYA 3LK3B 4FT6A 3RBHA 3FYXA 1GFOA 4FOZA 4FRXA 3VY9X 1QJ9A 3HW9A 5G39A 4FESA 3UAQA 4CTDA 4GCSA 5TISO 4FMSA 2QTKA 2ERVA 2ZLDA 4C69X 1S5LO 2R4OA 2LFUA 3POQA 2IWVA 4JCHA 4XNLA 1MM4A 1ZHXA 4AKRA 2X9KA 1Q9GA 2GE4A 3T0SA 4D5UA 3AA1A 1GFMA 3PGSA 4G76A 1ZHZA 4N59A 4UB6O 4AKRB 3AA7A 2KXPB 3VE1A 3AA0B 2WVPA 3AA1B 3SY7A 3JCUO 4GHBA 2Y7SA 3PORA 3AA7B 4UB8O 4AFKA 1HXTA 4AZLA 5B66O 2W80C 3VZWX 4E1TA 4O49A 1Q9FA 3POUA 5DL5A 2F1TA 5T5FA 3EMNX 3KZIO 5KAFO 4B61A 5PRNA 5H2FO 5DL8A 4FUVA 4LSEA 3BS0A 2OMFA 4AYEC 2M06A
chains in the Genus database with same CATH topology
4O3XB 4FSOA 4KR4A 4AKMA 4FRTA 4GCQA 1ORMA 3LK42 3VZUX 1HXXA 3QRAA 4O3WA 4RL9A 5AFUK 1QJ8A 2XE1A 3QRCA 2XMXA 2JMMA 2K4TA 3DA4A 4O3ZA 1YS5A 3G7GA 3PQUA 2W81C 2KC0A 2LHFA 3DA3A 1THQA 4LSIA 3A2SX 3WI5A 4XNKA 3AA6A 4O4UA 2J1NA 2K0LA 1GFPA 3TZGA 5IYUA 4GF4A 3O0EA 4JFBA 2ODJA 4RJXA 3T24A 1MPFA 2Y0HA 4AUIA 3AA6B 1PHOA 2Y0LA 8PRNA 2ZFGA 4FZLA 5DL7A 3AAEA 2Y2XA 1IZNA 1GFNA 4KR8A 4O4XA 2Y0KA 2FGQX 2PORA 4E1SA 1ZHWA 2KDYA 5ADXK 1GFQA 2O4VA 2XTQA 2YPVA 5EE2A 3AAEB 1OSMA 5DL6A 6PRNA 1IZNB 2FGRA 2X27X 3JTYA 4KRAA 3SY9A 1ZHTA 2XE3A 3AAAA 4U9CA 5D5DA 4D64A 4AYMC 3GP6A 3SYSA 4Z3TA 2MNHA 3HWBA 2XE5A 2KZ7A 1BH3A 1P4TA 3UU2A 2N2LA 3POXA 3PQSA 3SZDA 1PRNA 4FZNA 4LSFA 4RLBA 1H6S1 2KZ7B 3LK2A 3VY8X 5AFUL 1QJPA 4BUMX 4GCPA 3SZVA 3UPGA 1HXUA 3NSGA 3HOLA 3LK2B 3HOEA 4RJWA 3VE2A 2MHLA 3KVDD 4G75A 3K19A 4O3YA 3SYBA 2J4UP 2F1VA 4AYDC 3V8UA 2YNKA 4AYID 2KXPA 3AA0A 1OPFA 3C5OA 1BXWA 1E54A 1BT9A 4FZMA 5G26A 7PRNA 4F4BA 4LSHA 2XG6A 3LK41 4QQ1A 4RLCA 4D65A 2N2MA 4AYNA 5ADXL 2PRNA 3AAAB 2XTRA 5FVNA 2XE2A 3LK3A 4N58A 5GV0A 5JDPA 3WI4A 1G90A 4PUXA 3PRNA 3VZTX 3T20A 1MM5A 4FSPA 2M07A 1ZHYA 3LK3B 4FT6A 3RBHA 3FYXA 1GFOA 4FOZA 4FRXA 3VY9X 1QJ9A 3HW9A 3UAQA 4FESA 4GCSA 4FMSA 2QTKA 2ERVA 2ZLDA 4C69X 2LFUA 3POQA 4JCHA 4XNLA 1MM4A 1ZHXA 4AKRA 1Q9GA 2GE4A 3T0SA 4D5UA 3AA1A 1GFMA 4N59A 4G76A 1ZHZA 4AKRB 3AA7A 2KXPB 3VE1A 3AA0B 3AA1B 3SY7A 4GHBA 2Y7SA 3PORA 3AA7B 4AFKA 1HXTA 4AZLA 2W80C 3VZWX 4E1TA 4O49A 1Q9FA 3POUA 5DL5A 2F1TA 5T5FA 3EMNX 4B61A 5PRNA 5DL8A 4FUVA 4LSEA 2OMFA 4AYEC 2M06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FSO A;  4KR4 A;  4FRT A;  4GCQ A;  3VZU X;  1HXX A;  2XE1 A;  2K4T A;  4LSI A;  3A2S X;  3WI5 A;  2J1N A;  1GFP A;  3O0E A;  4JFB A;  2ODJ A;  4RJX A;  3T24 A;  1MPF A;  2Y0H A;  4AUI A;  1PHO A;  2Y0L A;  8PRN A;  2ZFG A;  5DL7 A;  2Y2X A;  4KR8 A;  1GFN A;  2Y0K A;  2FGQ X;  2POR A;  1GFQ A;  2O4V A;  6PRN A;  1OSM A;  5DL6 A;  2FGR A;  3JTY A;  4KRA A;  3SY9 A;  2XE3 A;  4D64 A;  3SYS A;  3HWB A;  2XE5 A;  1BH3 A;  3UU2 A;  3POX A;  3SZD A;  1PRN A;  4LSF A;  1H6S 1;  3VY8 X;  4BUM X;  4GCP A;  3SZV A;  3UPG A;  1HXU A;  3NSG A;  4RJW A;  3K19 A;  3SYB A;  2J4U P;  1OPF A;  1E54 A;  1BT9 A;  7PRN A;  4LSH A;  2XG6 A;  4D65 A;  2PRN A;  5FVN A;  2XE2 A;  5JDP A;  3WI4 A;  3PRN A;  3VZT X;  3T20 A;  4FSP A;  4FT6 A;  3FYX A;  1GFO A;  4FOZ A;  4FRX A;  3VY9 X;  3HW9 A;  4GCS A;  4FMS A;  2ZLD A;  2QTK A;  4C69 X;  3POQ A;  3T0S A;  4D5U A;  1GFM A;  3SY7 A;  3POR A;  1HXT A;  3VZW X;  3POU A;  5DL5 A;  3EMN X;  5PRN A;  5DL8 A;  4LSE A;  2OMF A; 
#chains in the Genus database with same CATH topology
 4O3X B;  4FSO A;  4KR4 A;  3BRZ A;  4AKM A;  2R4P A;  4FRT A;  4GCQ A;  1ORM A;  3BRY A;  2JQY A;  3PF1 A;  3LK4 2;  3VZU X;  1HXX A;  2WJR A;  3QRA A;  4O3W A;  4PJ0 O;  4RL9 A;  5AFU K;  1QJ8 A;  2XE1 A;  3QRC A;  2XMX A;  2JMM A;  2K4T A;  2R89 A;  3DA4 A;  4O3Z A;  1YS5 A;  5IYU A;  2WJQ A;  5KAI O;  2R8A A;  3G7G A;  3PQU A;  3WU2 O;  2W81 C;  2KC0 A;  2LHF A;  3DA3 A;  1THQ A;  4LSI A;  3A2S X;  3WI5 A;  4XNK A;  3AA6 A;  4O4U A;  2J1N A;  2K0L A;  1GFP A;  3TZG A;  3NJT A;  4GF4 A;  3O0E A;  5E79 O;  4JFB A;  2ODJ A;  4RJX A;  5G3A A;  1MPF A;  3T24 A;  4K3C A;  2Y0H A;  4AUI A;  3AA6 B;  1PHO A;  2AXT O;  2R4N A;  2Y0L A;  4C00 A;  2ZFG A;  4FZL A;  5DL7 A;  8PRN A;  3AAE A;  3DWO X;  2Y2X A;  1IZN A;  1GFN A;  1T16 A;  4KR8 A;  4O4X A;  2Y0K A;  2FGQ X;  2POR A;  4E1S A;  1ZHW A;  2KDY A;  3PGU A;  5ADX K;  2IWW A;  1GFQ A;  2O4V A;  2XTQ A;  2YPV A;  5EE2 A;  3AAE B;  1OSM A;  5DL6 A;  6PRN A;  1IZN B;  2FGR A;  4K3B A;  5B5E O;  2X27 X;  3JTY A;  4KRA A;  3SY9 A;  4N75 A;  1ZHT A;  2XE3 A;  3AAA A;  4N74 A;  4U9C A;  5D5D A;  4D64 A;  4AYM C;  3GP6 A;  2R88 A;  3SYS A;  4Z3T A;  2MNH A;  3HWB A;  2XE5 A;  2KZ7 A;  1BH3 A;  1P4T A;  3UU2 A;  2N2L A;  3POX A;  3PQS A;  3SZD A;  1PRN A;  4FZN A;  4C4V A;  4LSF A;  4RLB A;  1H6S 1;  2KZ7 B;  3LK2 A;  4FQE A;  3VY8 X;  5AFU L;  1QJP A;  3A0B O;  4BUM X;  4GCP A;  3SZV A;  4C4V B;  3UPG A;  1HXU A;  3NSG A;  3HOL A;  3LK2 B;  3HOE A;  4IL6 O;  4RJW A;  2MHL A;  3KVD D;  4G75 A;  3VE2 A;  3K19 A;  1T1L A;  4O3Y A;  2R4L A;  3SYB A;  2J4U P;  2F1V A;  3DZM A;  4AYD C;  3V8U A;  5G38 A;  2YNK A;  4AYI D;  2KXP A;  3AA0 A;  1OPF A;  3A0H O;  3C5O A;  1BXW A;  3PGR A;  1E54 A;  1BT9 A;  4FZM A;  5G26 A;  7PRN A;  4PR7 A;  4LSH A;  4F4B A;  2XG6 A;  3LK4 1;  4QQ1 A;  4RLC A;  3DWN A;  4D65 A;  2N2M A;  4AYN A;  5GTI O;  5ADX L;  5GTH O;  2PRN A;  3AAA B;  2XTR A;  5FVN A;  2XE2 A;  3LK3 A;  4N58 A;  5GV0 A;  5JDP A;  3WI4 A;  2F1C X;  4PUX A;  1G90 A;  3PRN A;  3VZT X;  3T20 A;  1MM5 A;  4FSP A;  2M07 A;  1ZHY A;  3LK3 B;  4FT6 A;  3RBH A;  3FYX A;  1GFO A;  4FOZ A;  4FRX A;  3VY9 X;  1QJ9 A;  3HW9 A;  5G39 A;  4FES A;  3UAQ A;  4CTD A;  4GCS A;  5TIS O;  4FMS A;  2QTK A;  2ERV A;  2ZLD A;  4C69 X;  1S5L O;  2R4O A;  2LFU A;  3POQ A;  2IWV A;  4JCH A;  4XNL A;  1MM4 A;  1ZHX A;  4AKR A;  2X9K A;  1Q9G A;  2GE4 A;  3T0S A;  4D5U A;  3AA1 A;  1GFM A;  3PGS A;  4G76 A;  1ZHZ A;  4N59 A;  4UB6 O;  4AKR B;  3AA7 A;  2KXP B;  3VE1 A;  3AA0 B;  2WVP A;  3AA1 B;  3SY7 A;  3JCU O;  4GHB A;  2Y7S A;  3POR A;  3AA7 B;  4UB8 O;  4AFK A;  1HXT A;  4AZL A;  5B66 O;  2W80 C;  3VZW X;  4E1T A;  4O49 A;  1Q9F A;  3POU A;  5DL5 A;  2F1T A;  5T5F A;  3EMN X;  3KZI O;  5KAF O;  4B61 A;  5PRN A;  5H2F O;  5DL8 A;  4FUV A;  4LSE A;  3BS0 A;  2OMF A;  4AYE C;  2M06 A; 
#chains in the Genus database with same CATH homology
 4O3X B;  4FSO A;  4KR4 A;  4AKM A;  4FRT A;  4GCQ A;  1ORM A;  3LK4 2;  3VZU X;  1HXX A;  3QRA A;  4O3W A;  4RL9 A;  5AFU K;  1QJ8 A;  2XE1 A;  3QRC A;  2XMX A;  2JMM A;  2K4T A;  3DA4 A;  4O3Z A;  1YS5 A;  3G7G A;  3PQU A;  2W81 C;  2KC0 A;  2LHF A;  3DA3 A;  1THQ A;  4LSI A;  3A2S X;  3WI5 A;  4XNK A;  3AA6 A;  4O4U A;  2J1N A;  2K0L A;  1GFP A;  3TZG A;  5IYU A;  4GF4 A;  3O0E A;  4JFB A;  2ODJ A;  4RJX A;  3T24 A;  1MPF A;  2Y0H A;  4AUI A;  3AA6 B;  1PHO A;  2Y0L A;  8PRN A;  2ZFG A;  4FZL A;  5DL7 A;  3AAE A;  2Y2X A;  1IZN A;  1GFN A;  4KR8 A;  4O4X A;  2Y0K A;  2FGQ X;  2POR A;  4E1S A;  1ZHW A;  2KDY A;  5ADX K;  1GFQ A;  2O4V A;  2XTQ A;  2YPV A;  5EE2 A;  3AAE B;  1OSM A;  5DL6 A;  6PRN A;  1IZN B;  2FGR A;  2X27 X;  3JTY A;  4KRA A;  3SY9 A;  1ZHT A;  2XE3 A;  3AAA A;  4U9C A;  5D5D A;  4D64 A;  4AYM C;  3GP6 A;  3SYS A;  4Z3T A;  2MNH A;  3HWB A;  2XE5 A;  2KZ7 A;  1BH3 A;  1P4T A;  3UU2 A;  2N2L A;  3POX A;  3PQS A;  3SZD A;  1PRN A;  4FZN A;  4LSF A;  4RLB A;  1H6S 1;  2KZ7 B;  3LK2 A;  3VY8 X;  5AFU L;  1QJP A;  4BUM X;  4GCP A;  3SZV A;  3UPG A;  1HXU A;  3NSG A;  3HOL A;  3LK2 B;  3HOE A;  4RJW A;  3VE2 A;  2MHL A;  3KVD D;  4G75 A;  3K19 A;  4O3Y A;  3SYB A;  2J4U P;  2F1V A;  4AYD C;  3V8U A;  2YNK A;  4AYI D;  2KXP A;  3AA0 A;  1OPF A;  3C5O A;  1BXW A;  1E54 A;  1BT9 A;  4FZM A;  5G26 A;  7PRN A;  4F4B A;  4LSH A;  2XG6 A;  3LK4 1;  4QQ1 A;  4RLC A;  4D65 A;  2N2M A;  4AYN A;  5ADX L;  2PRN A;  3AAA B;  2XTR A;  5FVN A;  2XE2 A;  3LK3 A;  4N58 A;  5GV0 A;  5JDP A;  3WI4 A;  1G90 A;  4PUX A;  3PRN A;  3VZT X;  3T20 A;  1MM5 A;  4FSP A;  2M07 A;  1ZHY A;  3LK3 B;  4FT6 A;  3RBH A;  3FYX A;  1GFO A;  4FOZ A;  4FRX A;  3VY9 X;  1QJ9 A;  3HW9 A;  3UAQ A;  4FES A;  4GCS A;  4FMS A;  2QTK A;  2ERV A;  2ZLD A;  4C69 X;  2LFU A;  3POQ A;  4JCH A;  4XNL A;  1MM4 A;  1ZHX A;  4AKR A;  1Q9G A;  2GE4 A;  3T0S A;  4D5U A;  3AA1 A;  1GFM A;  4N59 A;  4G76 A;  1ZHZ A;  4AKR B;  3AA7 A;  2KXP B;  3VE1 A;  3AA0 B;  3AA1 B;  3SY7 A;  4GHB A;  2Y7S A;  3POR A;  3AA7 B;  4AFK A;  1HXT A;  4AZL A;  2W80 C;  3VZW X;  4E1T A;  4O49 A;  1Q9F A;  3POU A;  5DL5 A;  2F1T A;  5T5F A;  3EMN X;  4B61 A;  5PRN A;  5DL8 A;  4FUV A;  4LSE A;  2OMF A;  4AYE C;  2M06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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