5DL6A

Crystal structure of acinetobacter baumannii occab2
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
399
structure length
395
Chain Sequence
EGSFIDNSSVELTTRNFYFDRDYQYPAAKDWTQGFILKANSGYTEGTIGFGLDVLATAGFKLDADAEHGGTGNLPRDTRTNEPADSYGEIGVTAKAKMSQTELRIGTLMPMNPVLVASPARLLPQTYRGISLTSKDIKDFDLQAAYLDKVNHRDSTNYEKIKISGVNGRFKGAETDGLYYLGGNYQFNPALKLTAFYMDVDDLYNQTMVGALHQYKINDTTNFSSQLRYYRSRDDGQAKAGLVDNDLYHAHFELKHQNHKFIFGTFQHHGDTAFPYLTGGETGLLIDTWPGEFLNPKEKAYSFRYEYDFKEYVPGLCFMTRYTTGHNIYAPNLGGTNLKERETDFDLGYTVQSGWLKNLGLRARYAIYDNNMLSTANIKPVNETRINIDYTWKFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Putative porin for vanillate trafficking (VanP)
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
total genus 101
structure length 395
sequence length 399
ec nomenclature
pdb deposition date 2015-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl6A00
4RJWA 3POUA 2XE5A 3T0SA 2XE2A 3UU2A 1GFNA 3POXA 4GCQA 1OPFA 2OMFA 2FGQX 4LSHA 3UPGA 1PRNA 3SY7A 3PORA 2J1NA 1BH3A 1HXTA 2O4VA 3T24A 1PHOA 2J4UP 2K4TA 2ZLDA 2Y0KA 1OSMA 4KR8A 3VZTX 3K19A 4D64A 3WI5A 4BUMX 3EMNX 3SY9A 6PRNA 5FVNA 3WI4A 4KR4A 1GFOA 4RJXA 4FRXA 3A2SX 2PORA 2XE1A 4GCPA 1MPFA 4FSOA 4D65A 3VZWX 5PRNA 3VY9X 3HWBA 1GFQA 3SZDA 3VY8X 3POQA 3JTYA 7PRNA 4D5UA 4GCSA 3SZVA 2XG6A 2XE3A 3NSGA 3PRNA 3SYSA 4JFBA 4AUIA 3HW9A 4FT6A 2PRNA 2ODJA 4C69X 1GFPA 3O0EA 8PRNA 4FRTA 5DL8A 2QTKA 2Y2XA 5DL5A 3SYBA 4KRAA 4LSEA 2Y0HA 1H6S1 2Y0LA 4FMSA 4FSPA 1E54A 2FGRA 4LSIA 1BT9A 5DL6A 3T20A 4LSFA 3FYXA 1HXUA 3VZUX 2ZFGA 1GFMA 5DL7A 1HXXA 4FOZA 5JDPA
chains in the Genus database with same CATH superfamily
4RJWA 3BS0A 2WJRA 3POUA 4O3YA 4PJ0O 4O3ZA 4XNLA 5G3AA 2JQYA 1IZNB 5D5DA 4N59A 2XE5A 4G75A 3T0SA 4FZMA 3QRAA 1IZNA 2XE2A 4F4BA 3UU2A 4E1TA 5AFUL 1GFNA 3AA7B 3POXA 4GCQA 4CTDA 1OPFA 3C5OA 2OMFA 4C4VB 2FGQX 4IL6O 4E1SA 3AA7A 4LSHA 3UPGA 3HOEA 1PRNA 3SY7A 3LK42 3PORA 2J1NA 1BH3A 1HXTA 2O4VA 2R4LA 3T24A 1PHOA 2N2LA 3RBHA 5ADXK 1THQA 2K4TA 5B5EO 2J4UP 2ERVA 2KC0A 2ZLDA 1ZHZA 2Y0KA 4G76A 3BRYA 4GHBA 1OSMA 2F1TA 4KR8A 4O49A 2X27X 4AYNA 3VZTX 3KZIO 4UB8O 4QQ1A 5B66O 3PF1A 3V8UA 3AA1B 3K19A 4D64A 4AYDC 3AA1A 2N2MA 1MM4A 2KDYA 3WI5A 4BUMX 3GP6A 4FZLA 4AKMA 5G39A 2LFUA 3EMNX 1S5LO 3SY9A 3G7GA 4RLBA 6PRNA 3DA4A 1G90A 5FVNA 5T5FA 3WI4A 1ORMA 1ZHXA 4N74A 4FQEA 4K3BA 4KR4A 3UAQA 3LK41 4GF4A 3WU2O 1GFOA 5G38A 1ZHTA 4AZLA 4C4VA 5GTHO 4RJXA 5E79O 4Z3TA 3NJTA 3PGSA 1QJ8A 4FRXA 2R4OA 3PQSA 5G26A 3A2SX 2PORA 4N58A 2XE1A 4GCPA 2M06A 2YNKA 1MPFA 3BRZA 3LK3B 1QJPA 4FSOA 4RLCA 3VZWX 4D65A 1MM5A 3AAAB 3LK3A 5PRNA 3VY9X 3HWBA 1GFQA 4AKRB 3DA3A 3AAAA 3SZDA 3VY8X 3POQA 3JTYA 2IWWA 3AA0B 7PRNA 2R4NA 2WJQA 2XMXA 4AKRA 3PGRA 4RL9A 4B61A 2MHLA 3AA0A 4PR7A 2F1CX 1Q9FA 4O4UA 4O4XA 4D5UA 5GTIO 3DZMA 3TZGA 4GCSA 3A0BO 3SZVA 5GV0A 2XG6A 2XE3A 5ADXL 2AXTO 3NSGA 3PRNA 5H2FO 3SYSA 4JFBA 2GE4A 4AUIA 4C00A 3HW9A 4JCHA 5EE2A 5AFUK 2KZ7B 4FT6A 2XTRA 2PRNA 2YPVA 4AFKA 2ODJA 4N75A 2KZ7A 4O3WA 1T1LA 4C69X 1GFPA 3O0EA 4FESA 1ZHYA 8PRNA 4AYMC 2K0LA 4FRTA 2R88A 3DWNA 3PGUA 5DL8A 2Y7SA 2QTKA 2X9KA 2Y2XA 2KXPB 2M07A 4PUXA 1QJ9A 2R4PA 5DL5A 3SYBA 3PQUA 4KRAA 2KXPA 2Y0HA 4LSEA 4UB6O 1H6S1 2IWVA 3LK2B 4AYEC 3KVDD 2Y0LA 1BXWA 1P4TA 3LK2A 5JDPA 3T20A 4FMSA 4AYID 3HOLA 2W80C 4FSPA 4FUVA 1E54A 2FGRA 3A0HO 1BT9A 3JCUO 4LSIA 3QRCA 4O3XB 2W81C 2XTQA 5DL6A 5KAIO 1Q9GA 2R8AA 2F1VA 4K3CA 1T16A 4XNKA 3VE2A 2R89A 4LSFA 3AAEB 3DWOX 3FYXA 2LHFA 1ZHWA 1HXUA 4U9CA 3AA6B 3VZUX 5IYUA 2ZFGA 1YS5A 2WVPA 2MNHA 3AAEA 3AA6A 3VE1A 1GFMA 5DL7A 1HXXA 2JMMA 5TISO 4FOZA 4FZNA 5KAFO
chains in the Genus database with same CATH topology
4RJWA 3POUA 4O3YA 4O3ZA 4XNLA 1IZNB 5D5DA 4N59A 2XE5A 4G75A 3T0SA 4FZMA 3QRAA 1IZNA 2XE2A 4F4BA 3UU2A 4E1TA 5AFUL 1GFNA 3AA7B 3POXA 4GCQA 4E1SA 1OPFA 3C5OA 2OMFA 2FGQX 3AA7A 4LSHA 3UPGA 3HOEA 1PRNA 3SY7A 3LK42 3PORA 2J1NA 1BH3A 1HXTA 2O4VA 3T24A 1PHOA 2N2LA 3RBHA 5ADXK 1THQA 2K4TA 2J4UP 2ERVA 2KC0A 2ZLDA 1ZHZA 2Y0KA 4G76A 4GHBA 1OSMA 2F1TA 4KR8A 4O49A 2X27X 4AYNA 3VZTX 4QQ1A 3V8UA 3AA1B 3K19A 4D64A 4AYDC 3AA1A 2N2MA 1MM4A 2KDYA 3WI5A 4BUMX 3GP6A 4FZLA 4AKMA 2LFUA 3EMNX 3SY9A 3G7GA 4RLBA 6PRNA 3DA4A 1G90A 5FVNA 5T5FA 3WI4A 1ORMA 1ZHXA 3UAQA 4KR4A 3LK41 4GF4A 1GFOA 1ZHTA 4RJXA 4Z3TA 1QJ8A 4FRXA 3PQSA 5G26A 3A2SX 2PORA 4N58A 2XE1A 4GCPA 2M06A 2YNKA 1MPFA 3LK3B 4FSOA 1QJPA 4RLCA 3VZWX 4D65A 1MM5A 3AAAB 3LK3A 5PRNA 3VY9X 3HWBA 1GFQA 4AKRB 3DA3A 3AAAA 3SZDA 3VY8X 3POQA 3JTYA 3AA0B 7PRNA 2XMXA 4AKRA 4RL9A 4B61A 2MHLA 3AA0A 1Q9FA 4O4UA 4O4XA 4D5UA 3TZGA 4GCSA 3SZVA 5GV0A 2XG6A 2XE3A 5ADXL 3NSGA 3PRNA 3SYSA 4JFBA 2GE4A 4AUIA 3HW9A 4JCHA 5EE2A 5AFUK 2KZ7B 4FT6A 2XTRA 2PRNA 2YPVA 4AFKA 2ODJA 2KZ7A 4O3WA 4C69X 1GFPA 3O0EA 4FESA 1ZHYA 8PRNA 4AYMC 2K0LA 4FRTA 5DL8A 2Y7SA 2QTKA 2Y2XA 2KXPB 2M07A 4PUXA 1QJ9A 5DL5A 3SYBA 3PQUA 4KRAA 2KXPA 2Y0HA 4LSEA 1H6S1 3LK2B 4AYEC 3KVDD 2Y0LA 1BXWA 1P4TA 3LK2A 5JDPA 4FMSA 4AYID 3HOLA 2W80C 4FSPA 4FUVA 1E54A 2FGRA 4LSIA 1BT9A 5DL6A 4AZLA 3QRCA 4O3XB 2W81C 2XTQA 3T20A 1Q9GA 2F1VA 4XNKA 3VE2A 4LSFA 3AAEB 3FYXA 2LHFA 1ZHWA 1HXUA 4U9CA 3AA6B 3VZUX 5IYUA 2ZFGA 1YS5A 2MNHA 3AAEA 3AA6A 3VE1A 1GFMA 5DL7A 1HXXA 2JMMA 4FOZA 4FZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RJW A;  3POU A;  2XE5 A;  3T0S A;  2XE2 A;  3UU2 A;  1GFN A;  3POX A;  4GCQ A;  1OPF A;  2OMF A;  2FGQ X;  4LSH A;  3UPG A;  1PRN A;  3SY7 A;  3POR A;  2J1N A;  1BH3 A;  1HXT A;  2O4V A;  3T24 A;  1PHO A;  2J4U P;  2K4T A;  2ZLD A;  2Y0K A;  1OSM A;  4KR8 A;  3VZT X;  3K19 A;  4D64 A;  3WI5 A;  4BUM X;  3EMN X;  3SY9 A;  6PRN A;  5FVN A;  3WI4 A;  4KR4 A;  1GFO A;  4RJX A;  4FRX A;  3A2S X;  2POR A;  2XE1 A;  4GCP A;  1MPF A;  4FSO A;  4D65 A;  3VZW X;  5PRN A;  3VY9 X;  3HWB A;  1GFQ A;  3SZD A;  3VY8 X;  3POQ A;  3JTY A;  7PRN A;  4D5U A;  4GCS A;  3SZV A;  2XG6 A;  2XE3 A;  3NSG A;  3PRN A;  3SYS A;  4JFB A;  4AUI A;  3HW9 A;  4FT6 A;  2PRN A;  2ODJ A;  4C69 X;  1GFP A;  3O0E A;  8PRN A;  4FRT A;  5DL8 A;  2QTK A;  2Y2X A;  5DL5 A;  3SYB A;  4KRA A;  4LSE A;  2Y0H A;  1H6S 1;  2Y0L A;  4FMS A;  4FSP A;  1E54 A;  2FGR A;  4LSI A;  1BT9 A;  5DL6 A;  3T20 A;  4LSF A;  3FYX A;  1HXU A;  3VZU X;  2ZFG A;  1GFM A;  5DL7 A;  1HXX A;  4FOZ A;  5JDP A; 
#chains in the Genus database with same CATH topology
 4RJW A;  3BS0 A;  2WJR A;  3POU A;  4O3Y A;  4PJ0 O;  4O3Z A;  4XNL A;  5G3A A;  2JQY A;  1IZN B;  5D5D A;  4N59 A;  2XE5 A;  4G75 A;  3T0S A;  4FZM A;  3QRA A;  1IZN A;  2XE2 A;  4F4B A;  3UU2 A;  4E1T A;  5AFU L;  1GFN A;  3AA7 B;  3POX A;  4GCQ A;  4CTD A;  1OPF A;  3C5O A;  2OMF A;  4C4V B;  2FGQ X;  4IL6 O;  4E1S A;  3AA7 A;  4LSH A;  3UPG A;  3HOE A;  1PRN A;  3SY7 A;  3LK4 2;  3POR A;  2J1N A;  1BH3 A;  1HXT A;  2O4V A;  2R4L A;  3T24 A;  1PHO A;  2N2L A;  3RBH A;  5ADX K;  1THQ A;  2K4T A;  5B5E O;  2J4U P;  2ERV A;  2KC0 A;  2ZLD A;  1ZHZ A;  2Y0K A;  4G76 A;  3BRY A;  4GHB A;  1OSM A;  2F1T A;  4KR8 A;  4O49 A;  2X27 X;  4AYN A;  3VZT X;  3KZI O;  4UB8 O;  4QQ1 A;  5B66 O;  3PF1 A;  3V8U A;  3AA1 B;  3K19 A;  4D64 A;  4AYD C;  3AA1 A;  2N2M A;  1MM4 A;  2KDY A;  3WI5 A;  4BUM X;  3GP6 A;  4FZL A;  4AKM A;  5G39 A;  2LFU A;  3EMN X;  1S5L O;  3SY9 A;  3G7G A;  4RLB A;  6PRN A;  3DA4 A;  1G90 A;  5FVN A;  5T5F A;  3WI4 A;  1ORM A;  1ZHX A;  4N74 A;  4FQE A;  4K3B A;  4KR4 A;  3UAQ A;  3LK4 1;  4GF4 A;  3WU2 O;  1GFO A;  5G38 A;  1ZHT A;  4AZL A;  4C4V A;  5GTH O;  4RJX A;  5E79 O;  4Z3T A;  3NJT A;  3PGS A;  1QJ8 A;  4FRX A;  2R4O A;  3PQS A;  5G26 A;  3A2S X;  2POR A;  4N58 A;  2XE1 A;  4GCP A;  2M06 A;  2YNK A;  1MPF A;  3BRZ A;  3LK3 B;  1QJP A;  4FSO A;  4RLC A;  3VZW X;  4D65 A;  1MM5 A;  3AAA B;  3LK3 A;  5PRN A;  3VY9 X;  3HWB A;  1GFQ A;  4AKR B;  3DA3 A;  3AAA A;  3SZD A;  3VY8 X;  3POQ A;  3JTY A;  2IWW A;  3AA0 B;  7PRN A;  2R4N A;  2WJQ A;  2XMX A;  4AKR A;  3PGR A;  4RL9 A;  4B61 A;  2MHL A;  3AA0 A;  4PR7 A;  2F1C X;  1Q9F A;  4O4U A;  4O4X A;  4D5U A;  5GTI O;  3DZM A;  3TZG A;  4GCS A;  3A0B O;  3SZV A;  5GV0 A;  2XG6 A;  2XE3 A;  5ADX L;  2AXT O;  3NSG A;  3PRN A;  5H2F O;  3SYS A;  4JFB A;  2GE4 A;  4AUI A;  4C00 A;  3HW9 A;  4JCH A;  5EE2 A;  5AFU K;  2KZ7 B;  4FT6 A;  2XTR A;  2PRN A;  2YPV A;  4AFK A;  2ODJ A;  4N75 A;  2KZ7 A;  4O3W A;  1T1L A;  4C69 X;  1GFP A;  3O0E A;  4FES A;  1ZHY A;  8PRN A;  4AYM C;  2K0L A;  4FRT A;  2R88 A;  3DWN A;  3PGU A;  5DL8 A;  2Y7S A;  2QTK A;  2X9K A;  2Y2X A;  2KXP B;  2M07 A;  4PUX A;  1QJ9 A;  2R4P A;  5DL5 A;  3SYB A;  3PQU A;  4KRA A;  2KXP A;  2Y0H A;  4LSE A;  4UB6 O;  1H6S 1;  2IWV A;  3LK2 B;  4AYE C;  3KVD D;  2Y0L A;  1BXW A;  1P4T A;  3LK2 A;  5JDP A;  3T20 A;  4FMS A;  4AYI D;  3HOL A;  2W80 C;  4FSP A;  4FUV A;  1E54 A;  2FGR A;  3A0H O;  1BT9 A;  3JCU O;  4LSI A;  3QRC A;  4O3X B;  2W81 C;  2XTQ A;  5DL6 A;  5KAI O;  1Q9G A;  2R8A A;  2F1V A;  4K3C A;  1T16 A;  4XNK A;  3VE2 A;  2R89 A;  4LSF A;  3AAE B;  3DWO X;  3FYX A;  2LHF A;  1ZHW A;  1HXU A;  4U9C A;  3AA6 B;  3VZU X;  5IYU A;  2ZFG A;  1YS5 A;  2WVP A;  2MNH A;  3AAE A;  3AA6 A;  3VE1 A;  1GFM A;  5DL7 A;  1HXX A;  2JMM A;  5TIS O;  4FOZ A;  4FZN A;  5KAF O; 
#chains in the Genus database with same CATH homology
 4RJW A;  3POU A;  4O3Y A;  4O3Z A;  4XNL A;  1IZN B;  5D5D A;  4N59 A;  2XE5 A;  4G75 A;  3T0S A;  4FZM A;  3QRA A;  1IZN A;  2XE2 A;  4F4B A;  3UU2 A;  4E1T A;  5AFU L;  1GFN A;  3AA7 B;  3POX A;  4GCQ A;  4E1S A;  1OPF A;  3C5O A;  2OMF A;  2FGQ X;  3AA7 A;  4LSH A;  3UPG A;  3HOE A;  1PRN A;  3SY7 A;  3LK4 2;  3POR A;  2J1N A;  1BH3 A;  1HXT A;  2O4V A;  3T24 A;  1PHO A;  2N2L A;  3RBH A;  5ADX K;  1THQ A;  2K4T A;  2J4U P;  2ERV A;  2KC0 A;  2ZLD A;  1ZHZ A;  2Y0K A;  4G76 A;  4GHB A;  1OSM A;  2F1T A;  4KR8 A;  4O49 A;  2X27 X;  4AYN A;  3VZT X;  4QQ1 A;  3V8U A;  3AA1 B;  3K19 A;  4D64 A;  4AYD C;  3AA1 A;  2N2M A;  1MM4 A;  2KDY A;  3WI5 A;  4BUM X;  3GP6 A;  4FZL A;  4AKM A;  2LFU A;  3EMN X;  3SY9 A;  3G7G A;  4RLB A;  6PRN A;  3DA4 A;  1G90 A;  5FVN A;  5T5F A;  3WI4 A;  1ORM A;  1ZHX A;  3UAQ A;  4KR4 A;  3LK4 1;  4GF4 A;  1GFO A;  1ZHT A;  4RJX A;  4Z3T A;  1QJ8 A;  4FRX A;  3PQS A;  5G26 A;  3A2S X;  2POR A;  4N58 A;  2XE1 A;  4GCP A;  2M06 A;  2YNK A;  1MPF A;  3LK3 B;  4FSO A;  1QJP A;  4RLC A;  3VZW X;  4D65 A;  1MM5 A;  3AAA B;  3LK3 A;  5PRN A;  3VY9 X;  3HWB A;  1GFQ A;  4AKR B;  3DA3 A;  3AAA A;  3SZD A;  3VY8 X;  3POQ A;  3JTY A;  3AA0 B;  7PRN A;  2XMX A;  4AKR A;  4RL9 A;  4B61 A;  2MHL A;  3AA0 A;  1Q9F A;  4O4U A;  4O4X A;  4D5U A;  3TZG A;  4GCS A;  3SZV A;  5GV0 A;  2XG6 A;  2XE3 A;  5ADX L;  3NSG A;  3PRN A;  3SYS A;  4JFB A;  2GE4 A;  4AUI A;  3HW9 A;  4JCH A;  5EE2 A;  5AFU K;  2KZ7 B;  4FT6 A;  2XTR A;  2PRN A;  2YPV A;  4AFK A;  2ODJ A;  2KZ7 A;  4O3W A;  4C69 X;  1GFP A;  3O0E A;  4FES A;  1ZHY A;  8PRN A;  4AYM C;  2K0L A;  4FRT A;  5DL8 A;  2Y7S A;  2QTK A;  2Y2X A;  2KXP B;  2M07 A;  4PUX A;  1QJ9 A;  5DL5 A;  3SYB A;  3PQU A;  4KRA A;  2KXP A;  2Y0H A;  4LSE A;  1H6S 1;  3LK2 B;  4AYE C;  3KVD D;  2Y0L A;  1BXW A;  1P4T A;  3LK2 A;  5JDP A;  4FMS A;  4AYI D;  3HOL A;  2W80 C;  4FSP A;  4FUV A;  1E54 A;  2FGR A;  4LSI A;  1BT9 A;  5DL6 A;  4AZL A;  3QRC A;  4O3X B;  2W81 C;  2XTQ A;  3T20 A;  1Q9G A;  2F1V A;  4XNK A;  3VE2 A;  4LSF A;  3AAE B;  3FYX A;  2LHF A;  1ZHW A;  1HXU A;  4U9C A;  3AA6 B;  3VZU X;  5IYU A;  2ZFG A;  1YS5 A;  2MNH A;  3AAE A;  3AA6 A;  3VE1 A;  1GFM A;  5DL7 A;  1HXX A;  2JMM A;  4FOZ A;  4FZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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