4RLCA

Crystal structure of the n-terminal beta-barrel domain of pseudomonas aeruginosa oprf
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
160
structure length
135
Chain Sequence
QGQNSVEIEAFGKRYFADLYGGSIGYFLTDDVELALSYGEYHDVVHGNLTSLDAIYHFGTPGVGLRPYVSAGLAHQNITNINSDSQGRQQMTMANIGAGLKYYFTENFFAKASLDGQYGLEKGEWMAGLGVGFNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Pseudomonas aeruginosa
publication title Small-Molecule Transport by CarO, an Abundant Eight-Stranded beta-Barrel Outer Membrane Protein from Acinetobacter baumannii.
pubmed doi rcsb
molecule keywords Outer membrane porin F
total genus 36
structure length 135
sequence length 160
ec nomenclature
pdb deposition date 2014-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 4rlcA00
2M06A 1QJ9A 1QJ8A 1THQA 2ERVA 2K0LA 4PUXA 2M07A 1Q9GA 2F1TA 2LHFA 1MM5A 2MNHA 4RLCA 1G90A 2GE4A 3QRCA 2N2LA 3QRAA 1ORMA 2MHLA 2N2MA 1P4TA 1BXWA 1Q9FA 3G7GA 2F1VA 1QJPA 1MM4A 3GP6A 3C5OA 2JMMA 2X27X
chains in the Genus database with same CATH superfamily
2R8AA 5AFUL 3HOEA 3T20A 1QJ9A 2XE2A 4RLBA 3SY7A 1HXUA 4O49A 2K0LA 5DL8A 4O3WA 1S5LO 4PUXA 3A0BO 3VE1A 3AA6A 2F1TA 2LFUA 2R4OA 3HWBA 4O3YA 5TISO 1BT9A 1GFQA 4QQ1A 1IZNA 2R4LA 3AA0A 3LK42 4N58A 4RLCA 3RBHA 4AYNA 4D64A 4E1SA 4E1TA 4FQEA 4FOZA 4PJ0O 1E54A 3AAAB 5EE2A 5ADXK 3PQUA 4C4VB 8PRNA 3SZDA 5GV0A 4UB6O 2Y0KA 3DWNA 2WJQA 3DA4A 3TZGA 1ORMA 3HW9A 2J1NA 1BXWA 3JTYA 3A2SX 2O4VA 4GCPA 4K3BA 4O4XA 4RJXA 5H2FO 5E79O 1OPFA 2J4UP 3EMNX 3C5OA 4C00A 3POXA 4LSFA 1PRNA 3BS0A 4AYDC 5B66O 2KC0A 2JQYA 1THQA 4KRAA 4FESA 3VZTX 4AUIA 4AYID 6PRNA 5GTHO 2R4NA 3AAEA 4N75A 5IYUA 2KZ7B 2PORA 3JCUO 1YS5A 4FZLA 2M07A 2AXTO 2OMFA 3K19A 4XNKA 7PRNA 3WU2O 4O3ZA 2W80C 3KVDD 3UPGA 3AAAA 4FUVA 1G90A 5DL6A 4KR4A 5DL5A 4C4VA 2F1CX 4FMSA 3AA7B 2GE4A 1ZHYA 3PQSA 2N2LA 3QRAA 4G75A 5ADXL 3V8UA 4AKRB 4AYEC 2PRNA 2MHLA 3PGUA 2KXPB 3POUA 4RJWA 4FZNA 1BH3A 3GP6A 3LK41 3LK3B 4AFKA 2R4PA 4Z3TA 2XE3A 4FRTA 2ZLDA 3VZUX 1T1LA 4KR8A 1QJ8A 2ERVA 4GHBA 3PRNA 4PR7A 2KDYA 4UB8O 1MPFA 4AZLA 4N59A 2R89A 3SYSA 5AFUK 3SY9A 3HOLA 5G39A 3T24A 4B61A 3UAQA 4FRXA 3WI5A 2IWWA 3PGRA 5GTIO 3AA7A 1MM5A 2XE5A 2XG6A 4GF4A 4D65A 4JFBA 2Y7SA 4IL6O 4AKRA 1GFNA 3PF1A 5T5FA 4BUMX 3UU2A 2FGQX 2R88A 2KXPA 3AA1B 4F4BA 3PGSA 1HXTA 2N2MA 2YPVA 3LK3A 3NJTA 4FT6A 2XMXA 5KAFO 3POQA 3G7GA 1H6S1 2IWVA 1QJPA 1ZHWA 4XNLA 4O3XB 3VY8X 4GCSA 2X27X 2M06A 4JCHA 2Y0LA 4U9CA 3KZIO 3FYXA 4GCQA 5G3AA 5B5EO 1OSMA 4D5UA 2KZ7A 4O4UA 3LK2B 5G38A 3SYBA 5G26A 5JDPA 3AAEB 3VY9X 4AKMA 4K3CA 4C69X 1Q9GA 3BRZA 2LHFA 4FZMA 2XTRA 1GFMA 5PRNA 2MNHA 2WVPA 3AA6B 5D5DA 1GFOA 3BRYA 2K4TA 3DZMA 4LSHA 1T16A 4CTDA 3WI4A 2YNKA 3AA1A 1IZNB 1HXXA 1ZHTA 2QTKA 2FGRA 3AA0B 5DL7A 2Y0HA 3QRCA 3SZVA 1PHOA 3VZWX 2WJRA 2X9KA 1ZHXA 2Y2XA 3PORA 2ZFGA 4FSOA 4N74A 4AYMC 4G76A 3DA3A 1P4TA 4LSEA 3A0HO 3T0SA 3VE2A 1GFPA 1Q9FA 1ZHZA 2F1VA 2XE1A 3DWOX 2ODJA 2XTQA 3NSGA 1MM4A 3O0EA 4FSPA 4LSIA 4RL9A 5FVNA 2W81C 5KAIO 3LK2A 2JMMA
chains in the Genus database with same CATH topology
5AFUL 3HOEA 3T20A 1QJ9A 2XE2A 4RLBA 3SY7A 1HXUA 4O49A 2K0LA 5DL8A 4O3WA 4PUXA 3VE1A 3AA6A 2F1TA 2LFUA 3HWBA 4O3YA 1BT9A 1GFQA 4QQ1A 1IZNA 3LK42 3AA0A 4N58A 4RLCA 3RBHA 4AYNA 4D64A 4E1SA 4E1TA 4FOZA 1E54A 3AAAB 5EE2A 5ADXK 3PQUA 8PRNA 3SZDA 5GV0A 2Y0KA 3DA4A 3TZGA 1ORMA 3HW9A 2J1NA 1BXWA 3JTYA 3A2SX 2O4VA 4GCPA 4O4XA 4RJXA 1OPFA 2J4UP 3EMNX 3C5OA 3POXA 4LSFA 1PRNA 4AYDC 2KC0A 4KRAA 1THQA 4AUIA 4FESA 3VZTX 4AYID 6PRNA 3AAEA 5IYUA 2KZ7B 2PORA 1YS5A 4FZLA 2M07A 4XNKA 2OMFA 3K19A 7PRNA 4O3ZA 2W80C 3KVDD 3UPGA 3AAAA 4FUVA 1G90A 5DL6A 4KR4A 5DL5A 4FMSA 3AA7B 2GE4A 1ZHYA 3PQSA 2N2LA 3QRAA 4G75A 5ADXL 3V8UA 4AKRB 4AYEC 2PRNA 2MHLA 2KXPB 3POUA 4RJWA 4FZNA 1BH3A 3GP6A 3LK41 3LK3B 4AFKA 4Z3TA 2XE3A 4FRTA 2ZLDA 3VZUX 4KR8A 1QJ8A 2ERVA 4GHBA 3PRNA 2KDYA 1MPFA 4AZLA 4N59A 3SYSA 5AFUK 3SY9A 3HOLA 3T24A 4B61A 3UAQA 4FRXA 3WI5A 3AA7A 1MM5A 2XE5A 2XG6A 4GF4A 4D65A 4JFBA 2Y7SA 4AKRA 1GFNA 5T5FA 4BUMX 3UU2A 2FGQX 2KXPA 3AA1B 4F4BA 1HXTA 2N2MA 2YPVA 3LK3A 4FT6A 2XMXA 3POQA 3G7GA 1H6S1 1QJPA 1ZHWA 4XNLA 4O3XB 3VY8X 4GCSA 2X27X 2M06A 4JCHA 2Y0LA 4U9CA 3FYXA 4GCQA 1OSMA 4D5UA 2KZ7A 4O4UA 3LK2B 3SYBA 5G26A 5JDPA 3AAEB 3VY9X 4AKMA 4C69X 1Q9GA 4FZMA 2LHFA 2XTRA 1GFMA 5PRNA 2MNHA 3AA6B 5D5DA 1GFOA 2K4TA 4LSHA 3WI4A 2YNKA 3AA1A 1IZNB 1HXXA 1ZHTA 2QTKA 2FGRA 3AA0B 5DL7A 2Y0HA 3QRCA 3SZVA 1PHOA 3VZWX 2Y2XA 1ZHXA 3PORA 2ZFGA 4FSOA 4AYMC 4G76A 3DA3A 1P4TA 4LSEA 3T0SA 3VE2A 1GFPA 2XE1A 1Q9FA 1ZHZA 2F1VA 3NSGA 2ODJA 2XTQA 3O0EA 1MM4A 4FSPA 4LSIA 4RL9A 5FVNA 2W81C 3LK2A 2JMMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M06 A;  1QJ9 A;  1QJ8 A;  1THQ A;  2ERV A;  2K0L A;  4PUX A;  2M07 A;  1Q9G A;  2F1T A;  2LHF A;  1MM5 A;  2MNH A;  4RLC A;  1G90 A;  2GE4 A;  3QRC A;  2N2L A;  3QRA A;  1ORM A;  2MHL A;  2N2M A;  1P4T A;  1BXW A;  1Q9F A;  3G7G A;  2F1V A;  1QJP A;  1MM4 A;  3GP6 A;  3C5O A;  2JMM A;  2X27 X; 
#chains in the Genus database with same CATH topology
 2R8A A;  5AFU L;  3HOE A;  3T20 A;  1QJ9 A;  2XE2 A;  4RLB A;  3SY7 A;  1HXU A;  4O49 A;  2K0L A;  5DL8 A;  4O3W A;  1S5L O;  4PUX A;  3A0B O;  3VE1 A;  3AA6 A;  2F1T A;  2LFU A;  2R4O A;  3HWB A;  4O3Y A;  5TIS O;  1BT9 A;  1GFQ A;  4QQ1 A;  1IZN A;  2R4L A;  3AA0 A;  3LK4 2;  4N58 A;  4RLC A;  3RBH A;  4AYN A;  4D64 A;  4E1S A;  4E1T A;  4FQE A;  4FOZ A;  4PJ0 O;  1E54 A;  3AAA B;  5EE2 A;  5ADX K;  3PQU A;  4C4V B;  8PRN A;  3SZD A;  5GV0 A;  4UB6 O;  2Y0K A;  3DWN A;  2WJQ A;  3DA4 A;  3TZG A;  1ORM A;  3HW9 A;  2J1N A;  1BXW A;  3JTY A;  3A2S X;  2O4V A;  4GCP A;  4K3B A;  4O4X A;  4RJX A;  5H2F O;  5E79 O;  1OPF A;  2J4U P;  3EMN X;  3C5O A;  4C00 A;  3POX A;  4LSF A;  1PRN A;  3BS0 A;  4AYD C;  5B66 O;  2KC0 A;  2JQY A;  1THQ A;  4KRA A;  4FES A;  3VZT X;  4AUI A;  4AYI D;  6PRN A;  5GTH O;  2R4N A;  3AAE A;  4N75 A;  5IYU A;  2KZ7 B;  2POR A;  3JCU O;  1YS5 A;  4FZL A;  2M07 A;  2AXT O;  2OMF A;  3K19 A;  4XNK A;  7PRN A;  3WU2 O;  4O3Z A;  2W80 C;  3KVD D;  3UPG A;  3AAA A;  4FUV A;  1G90 A;  5DL6 A;  4KR4 A;  5DL5 A;  4C4V A;  2F1C X;  4FMS A;  3AA7 B;  2GE4 A;  1ZHY A;  3PQS A;  2N2L A;  3QRA A;  4G75 A;  5ADX L;  3V8U A;  4AKR B;  4AYE C;  2PRN A;  2MHL A;  3PGU A;  2KXP B;  3POU A;  4RJW A;  4FZN A;  1BH3 A;  3GP6 A;  3LK4 1;  3LK3 B;  4AFK A;  2R4P A;  4Z3T A;  2XE3 A;  4FRT A;  2ZLD A;  3VZU X;  1T1L A;  4KR8 A;  1QJ8 A;  2ERV A;  4GHB A;  3PRN A;  4PR7 A;  2KDY A;  4UB8 O;  1MPF A;  4AZL A;  4N59 A;  2R89 A;  3SYS A;  5AFU K;  3SY9 A;  3HOL A;  5G39 A;  3T24 A;  4B61 A;  3UAQ A;  4FRX A;  3WI5 A;  2IWW A;  3PGR A;  5GTI O;  3AA7 A;  1MM5 A;  2XE5 A;  2XG6 A;  4GF4 A;  4D65 A;  4JFB A;  2Y7S A;  4IL6 O;  4AKR A;  1GFN A;  3PF1 A;  5T5F A;  4BUM X;  3UU2 A;  2FGQ X;  2R88 A;  2KXP A;  3AA1 B;  4F4B A;  3PGS A;  1HXT A;  2N2M A;  2YPV A;  3LK3 A;  3NJT A;  4FT6 A;  2XMX A;  5KAF O;  3POQ A;  3G7G A;  1H6S 1;  2IWV A;  1QJP A;  1ZHW A;  4XNL A;  4O3X B;  3VY8 X;  4GCS A;  2X27 X;  2M06 A;  4JCH A;  2Y0L A;  4U9C A;  3KZI O;  3FYX A;  4GCQ A;  5G3A A;  5B5E O;  1OSM A;  4D5U A;  2KZ7 A;  4O4U A;  3LK2 B;  5G38 A;  3SYB A;  5G26 A;  5JDP A;  3AAE B;  3VY9 X;  4AKM A;  4K3C A;  4C69 X;  1Q9G A;  3BRZ A;  2LHF A;  4FZM A;  2XTR A;  1GFM A;  5PRN A;  2MNH A;  2WVP A;  3AA6 B;  5D5D A;  1GFO A;  3BRY A;  2K4T A;  3DZM A;  4LSH A;  1T16 A;  4CTD A;  3WI4 A;  2YNK A;  3AA1 A;  1IZN B;  1HXX A;  1ZHT A;  2QTK A;  2FGR A;  3AA0 B;  5DL7 A;  2Y0H A;  3QRC A;  3SZV A;  1PHO A;  3VZW X;  2WJR A;  2X9K A;  1ZHX A;  2Y2X A;  3POR A;  2ZFG A;  4FSO A;  4N74 A;  4AYM C;  4G76 A;  3DA3 A;  1P4T A;  4LSE A;  3A0H O;  3T0S A;  3VE2 A;  1GFP A;  1Q9F A;  1ZHZ A;  2F1V A;  2XE1 A;  3DWO X;  2ODJ A;  2XTQ A;  3NSG A;  1MM4 A;  3O0E A;  4FSP A;  4LSI A;  4RL9 A;  5FVN A;  2W81 C;  5KAI O;  3LK2 A;  2JMM A; 
#chains in the Genus database with same CATH homology
 5AFU L;  3HOE A;  3T20 A;  1QJ9 A;  2XE2 A;  4RLB A;  3SY7 A;  1HXU A;  4O49 A;  2K0L A;  5DL8 A;  4O3W A;  4PUX A;  3VE1 A;  3AA6 A;  2F1T A;  2LFU A;  3HWB A;  4O3Y A;  1BT9 A;  1GFQ A;  4QQ1 A;  1IZN A;  3LK4 2;  3AA0 A;  4N58 A;  4RLC A;  3RBH A;  4AYN A;  4D64 A;  4E1S A;  4E1T A;  4FOZ A;  1E54 A;  3AAA B;  5EE2 A;  5ADX K;  3PQU A;  8PRN A;  3SZD A;  5GV0 A;  2Y0K A;  3DA4 A;  3TZG A;  1ORM A;  3HW9 A;  2J1N A;  1BXW A;  3JTY A;  3A2S X;  2O4V A;  4GCP A;  4O4X A;  4RJX A;  1OPF A;  2J4U P;  3EMN X;  3C5O A;  3POX A;  4LSF A;  1PRN A;  4AYD C;  2KC0 A;  4KRA A;  1THQ A;  4AUI A;  4FES A;  3VZT X;  4AYI D;  6PRN A;  3AAE A;  5IYU A;  2KZ7 B;  2POR A;  1YS5 A;  4FZL A;  2M07 A;  4XNK A;  2OMF A;  3K19 A;  7PRN A;  4O3Z A;  2W80 C;  3KVD D;  3UPG A;  3AAA A;  4FUV A;  1G90 A;  5DL6 A;  4KR4 A;  5DL5 A;  4FMS A;  3AA7 B;  2GE4 A;  1ZHY A;  3PQS A;  2N2L A;  3QRA A;  4G75 A;  5ADX L;  3V8U A;  4AKR B;  4AYE C;  2PRN A;  2MHL A;  2KXP B;  3POU A;  4RJW A;  4FZN A;  1BH3 A;  3GP6 A;  3LK4 1;  3LK3 B;  4AFK A;  4Z3T A;  2XE3 A;  4FRT A;  2ZLD A;  3VZU X;  4KR8 A;  1QJ8 A;  2ERV A;  4GHB A;  3PRN A;  2KDY A;  1MPF A;  4AZL A;  4N59 A;  3SYS A;  5AFU K;  3SY9 A;  3HOL A;  3T24 A;  4B61 A;  3UAQ A;  4FRX A;  3WI5 A;  3AA7 A;  1MM5 A;  2XE5 A;  2XG6 A;  4GF4 A;  4D65 A;  4JFB A;  2Y7S A;  4AKR A;  1GFN A;  5T5F A;  4BUM X;  3UU2 A;  2FGQ X;  2KXP A;  3AA1 B;  4F4B A;  1HXT A;  2N2M A;  2YPV A;  3LK3 A;  4FT6 A;  2XMX A;  3POQ A;  3G7G A;  1H6S 1;  1QJP A;  1ZHW A;  4XNL A;  4O3X B;  3VY8 X;  4GCS A;  2X27 X;  2M06 A;  4JCH A;  2Y0L A;  4U9C A;  3FYX A;  4GCQ A;  1OSM A;  4D5U A;  2KZ7 A;  4O4U A;  3LK2 B;  3SYB A;  5G26 A;  5JDP A;  3AAE B;  3VY9 X;  4AKM A;  4C69 X;  1Q9G A;  4FZM A;  2LHF A;  2XTR A;  1GFM A;  5PRN A;  2MNH A;  3AA6 B;  5D5D A;  1GFO A;  2K4T A;  4LSH A;  3WI4 A;  2YNK A;  3AA1 A;  1IZN B;  1HXX A;  1ZHT A;  2QTK A;  2FGR A;  3AA0 B;  5DL7 A;  2Y0H A;  3QRC A;  3SZV A;  1PHO A;  3VZW X;  2Y2X A;  1ZHX A;  3POR A;  2ZFG A;  4FSO A;  4AYM C;  4G76 A;  3DA3 A;  1P4T A;  4LSE A;  3T0S A;  3VE2 A;  1GFP A;  2XE1 A;  1Q9F A;  1ZHZ A;  2F1V A;  3NSG A;  2ODJ A;  2XTQ A;  3O0E A;  1MM4 A;  4FSP A;  4LSI A;  4RL9 A;  5FVN A;  2W81 C;  3LK2 A;  2JMM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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