4RLCA

Crystal structure of the n-terminal beta-barrel domain of pseudomonas aeruginosa oprf
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
160
structure length
135
Chain Sequence
QGQNSVEIEAFGKRYFADLYGGSIGYFLTDDVELALSYGEYHDVVHGNLTSLDAIYHFGTPGVGLRPYVSAGLAHQNITNINSDSQGRQQMTMANIGAGLKYYFTENFFAKASLDGQYGLEKGEWMAGLGVGFNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Outer membrane porin F
publication title Small-Molecule Transport by CarO, an Abundant Eight-Stranded beta-Barrel Outer Membrane Protein from Acinetobacter baumannii.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 36
structure length 135
sequence length 160
ec nomenclature
pdb deposition date 2014-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 4rlcA00
2LHFA 2JMMA 2N2MA 1G90A 2M06A 1P4TA 1QJ8A 3QRCA 3GP6A 1QJ9A 2MNHA 2F1VA 1BXWA 2M07A 4PUXA 1Q9FA 1MM4A 2ERVA 2N2LA 1ORMA 1QJPA 3QRAA 3G7GA 1Q9GA 2GE4A 2X27X 2MHLA 4RLCA 1MM5A 3C5OA 2K0LA 1THQA 2F1TA
chains in the Genus database with same CATH superfamily
3WI4A 1YS5A 3DWNA 2JQYA 4XNKA 4FSOA 3AA0B 5DL8A 1E54A 1OPFA 2KZ7A 4AKRB 2YPVA 3SY7A 3T0SA 4AYMC 3PORA 5G26A 4GHBA 2F1VA 3BRYA 1BXWA 5D5DA 5B66O 2M07A 2Y2XA 4PUXA 3SYBA 5H2FO 3A0HO 5T5FA 3PQUA 1IZNB 1OSMA 3LK3A 2XE3A 5PRNA 4AYEC 3BS0A 5AFUL 3KVDD 1BH3A 2KDYA 2X9KA 3K19A 1GFMA 2W81C 3DZMA 3POQA 4K3CA 4RL9A 5E79O 3G7GA 2GE4A 2WJRA 4FMSA 4C00A 4D5UA 5AFUK 3A0BO 3RBHA 1ZHZA 5DL5A 4E1SA 3AA7A 3WI5A 3AAAB 1H6S1 3VE1A 4O49A 3A2SX 4PR7A 2N2MA 3AAAA 5G39A 4B61A 5ADXL 2M06A 3POUA 1G90A 4RJWA 3AAEA 4KRAA 2K4TA 2KZ7B 2F1CX 3JCUO 3LK2A 4GCPA 5KAFO 3VE2A 3O0EA 2R4OA 4N59A 3SY9A 4FZNA 2FGQX 3VZUX 3HWBA 1ZHXA 2MNHA 3NSGA 4AYNA 3AA6B 5KAIO 4O3ZA 1Q9FA 4LSFA 5DL7A 1ZHWA 4O4UA 1MM4A 1S5LO 3PGUA 5EE2A 3DWOX 4LSIA 1HXXA 1ORMA 1QJPA 1ZHTA 2YNKA 2ZLDA 4FRTA 4FZMA 4JFBA 4N75A 3SYSA 5ADXK 2WJQA 2Y7SA 4XNLA 5GTIO 2XE5A 5IYUA 3SZDA 2KXPA 4FESA 4O3YA 3V8UA 2PORA 1HXTA 3SZVA 4C4VB 3DA3A 4K3BA 4AYDC 4F4BA 3HW9A 2KC0A 1THQA 1GFNA 4UB6O 4C69X 4LSHA 2JMMA 3LK41 4UB8O 4D64A 4Z3TA 3LK2B 2XE2A 4AUIA 4AZLA 1PHOA 4GCQA 3GP6A 2Y0KA 3UAQA 2XTQA 3PGRA 3PRNA 1QJ9A 2QTKA 3AA1A 8PRNA 4FQEA 6PRNA 1BT9A 1IZNA 2IWVA 2XG6A 4GCSA 1PRNA 2J4UP 3LK42 2ERVA 3PQSA 5GV0A 4U9CA 2N2LA 2ODJA 4N58A 5DL6A 3LK3B 1MPFA 4RJXA 5G38A 3TZGA 3VY9X 4AYID 2IWWA 1T16A 4JCHA 4KR8A 5GTHO 2X27X 3HOEA 2KXPB 2R88A 3PF1A 4GF4A 3DA4A 3EMNX 4O3XB 2MHLA 4RLCA 3UU2A 3VY8X 3VZWX 4N74A 2R89A 2W80C 3AA7B 3HOLA 2K0LA 4BUMX 4D65A 2F1TA 2LHFA 2WVPA 4AFKA 2R4LA 2R4NA 4IL6O 2R4PA 3AAEB 1P4TA 1QJ8A 3AA0A 3FYXA 4E1TA 2O4VA 2XMXA 3QRCA 4G75A 4AKRA 1GFPA 4O3WA 4FSPA 3AA1B 1T1LA 2OMFA 3AA6A 3JTYA 4FT6A 4RLBA 1HXUA 2J1NA 2R8AA 1GFQA 2XE1A 3PGSA 4O4XA 5FVNA 3UPGA 2Y0LA 4PJ0O 4QQ1A 5B5EO 7PRNA 4AKMA 2PRNA 3QRAA 4FZLA 3BRZA 4FOZA 4G76A 4LSEA 4CTDA 3T20A 1Q9GA 3T24A 3NJTA 2XTRA 4FRXA 5G3AA 2ZFGA 2Y0HA 3KZIO 1MM5A 3POXA 3WU2O 3VZTX 2LFUA 3C5OA 4C4VA 2FGRA 5JDPA 4FUVA 4KR4A 5TISO 1ZHYA 2AXTO 1GFOA
chains in the Genus database with same CATH topology
3WI4A 1YS5A 4XNKA 5DL8A 4FSOA 3AA0B 1E54A 1OPFA 2KZ7A 4AKRB 2YPVA 3SY7A 3T0SA 4AYMC 3PORA 5G26A 4GHBA 2F1VA 5D5DA 1BXWA 2M07A 2Y2XA 4PUXA 3SYBA 5T5FA 3PQUA 1IZNB 1OSMA 3LK3A 2XE3A 5PRNA 4AYEC 5AFUL 6PRNA 3KVDD 1BH3A 2KDYA 3K19A 1GFMA 2W81C 3POQA 4RL9A 3G7GA 2GE4A 5AFUK 4FMSA 4D5UA 3RBHA 1ZHZA 5DL5A 4E1SA 3AA7A 3AAAB 1H6S1 3VE1A 4O49A 3A2SX 2N2MA 3AAAA 4B61A 5ADXL 1G90A 2M06A 3POUA 4RJWA 3AAEA 4KRAA 2K4TA 2KZ7B 3LK2A 4GCPA 3VE2A 3O0EA 4N59A 3SY9A 4FZNA 2FGQX 3VZUX 3HWBA 1ZHXA 2MNHA 3NSGA 4AYNA 3AA6B 4O3ZA 1Q9FA 4LSFA 1ZHWA 4O4UA 1MM4A 5EE2A 4LSIA 1HXXA 1ORMA 1QJPA 1ZHTA 2YNKA 2ZLDA 4FRTA 4FZMA 4JFBA 5DL7A 3SYSA 5ADXK 2Y7SA 4XNLA 2XE5A 5IYUA 3SZDA 2KXPA 4FESA 4O3YA 3V8UA 2PORA 1HXTA 3SZVA 3DA3A 4AYDC 4F4BA 3HW9A 2KC0A 1THQA 1GFNA 4C69X 4LSHA 2JMMA 3LK41 4D64A 4Z3TA 3LK2B 2XE2A 4AUIA 4AZLA 1PHOA 4GCQA 3GP6A 2Y0KA 3UAQA 2XTQA 3PRNA 1QJ9A 2QTKA 3AA1A 8PRNA 1BT9A 1IZNA 4GCSA 2XG6A 1PRNA 2J4UP 3LK42 2ERVA 3PQSA 5GV0A 4U9CA 2N2LA 2ODJA 4N58A 5DL6A 3LK3B 1MPFA 4RJXA 3TZGA 3VY9X 3WI5A 4AYID 4JCHA 4KR8A 2X27X 3HOEA 2KXPB 4O3XB 4GF4A 3UU2A 3DA4A 3EMNX 3VY8X 2MHLA 4RLCA 3VZWX 2W80C 3AA7B 3HOLA 2K0LA 4BUMX 4D65A 2F1TA 2LHFA 4AFKA 3AAEB 1P4TA 1QJ8A 3AA0A 3FYXA 4E1TA 2O4VA 2XMXA 3QRCA 4G75A 4AKRA 1GFPA 4O3WA 4FSPA 3AA1B 2OMFA 3AA6A 3JTYA 4FT6A 4RLBA 1HXUA 2J1NA 1GFQA 2XE1A 4O4XA 3UPGA 5FVNA 2Y0LA 4QQ1A 7PRNA 4AKMA 2PRNA 3QRAA 4FZLA 4G76A 4FOZA 4LSEA 3T20A 1Q9GA 3T24A 4FRXA 2XTRA 2ZFGA 2Y0HA 3POXA 1MM5A 3VZTX 2LFUA 3C5OA 2FGRA 5JDPA 4FUVA 4KR4A 1ZHYA 1GFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LHF A;  2JMM A;  2N2M A;  1G90 A;  2M06 A;  1P4T A;  1QJ8 A;  3QRC A;  3GP6 A;  1QJ9 A;  2MNH A;  2F1V A;  1BXW A;  2M07 A;  4PUX A;  1Q9F A;  1MM4 A;  2ERV A;  2N2L A;  1ORM A;  1QJP A;  3QRA A;  3G7G A;  1Q9G A;  2GE4 A;  2X27 X;  2MHL A;  4RLC A;  1MM5 A;  3C5O A;  2K0L A;  1THQ A;  2F1T A; 
#chains in the Genus database with same CATH topology
 3WI4 A;  1YS5 A;  3DWN A;  2JQY A;  4XNK A;  4FSO A;  3AA0 B;  5DL8 A;  1E54 A;  1OPF A;  2KZ7 A;  4AKR B;  2YPV A;  3SY7 A;  3T0S A;  4AYM C;  3POR A;  5G26 A;  4GHB A;  2F1V A;  3BRY A;  1BXW A;  5D5D A;  5B66 O;  2M07 A;  2Y2X A;  4PUX A;  3SYB A;  5H2F O;  3A0H O;  5T5F A;  3PQU A;  1IZN B;  1OSM A;  3LK3 A;  2XE3 A;  5PRN A;  4AYE C;  3BS0 A;  5AFU L;  3KVD D;  1BH3 A;  2KDY A;  2X9K A;  3K19 A;  1GFM A;  2W81 C;  3DZM A;  3POQ A;  4K3C A;  4RL9 A;  5E79 O;  3G7G A;  2GE4 A;  2WJR A;  4FMS A;  4C00 A;  4D5U A;  5AFU K;  3A0B O;  3RBH A;  1ZHZ A;  5DL5 A;  4E1S A;  3AA7 A;  3WI5 A;  3AAA B;  1H6S 1;  3VE1 A;  4O49 A;  3A2S X;  4PR7 A;  2N2M A;  3AAA A;  5G39 A;  4B61 A;  5ADX L;  2M06 A;  3POU A;  1G90 A;  4RJW A;  3AAE A;  4KRA A;  2K4T A;  2KZ7 B;  2F1C X;  3JCU O;  3LK2 A;  4GCP A;  5KAF O;  3VE2 A;  3O0E A;  2R4O A;  4N59 A;  3SY9 A;  4FZN A;  2FGQ X;  3VZU X;  3HWB A;  1ZHX A;  2MNH A;  3NSG A;  4AYN A;  3AA6 B;  5KAI O;  4O3Z A;  1Q9F A;  4LSF A;  5DL7 A;  1ZHW A;  4O4U A;  1MM4 A;  1S5L O;  3PGU A;  5EE2 A;  3DWO X;  4LSI A;  1HXX A;  1ORM A;  1QJP A;  1ZHT A;  2YNK A;  2ZLD A;  4FRT A;  4FZM A;  4JFB A;  4N75 A;  3SYS A;  5ADX K;  2WJQ A;  2Y7S A;  4XNL A;  5GTI O;  2XE5 A;  5IYU A;  3SZD A;  2KXP A;  4FES A;  4O3Y A;  3V8U A;  2POR A;  1HXT A;  3SZV A;  4C4V B;  3DA3 A;  4K3B A;  4AYD C;  4F4B A;  3HW9 A;  2KC0 A;  1THQ A;  1GFN A;  4UB6 O;  4C69 X;  4LSH A;  2JMM A;  3LK4 1;  4UB8 O;  4D64 A;  4Z3T A;  3LK2 B;  2XE2 A;  4AUI A;  4AZL A;  1PHO A;  4GCQ A;  3GP6 A;  2Y0K A;  3UAQ A;  2XTQ A;  3PGR A;  3PRN A;  1QJ9 A;  2QTK A;  3AA1 A;  8PRN A;  4FQE A;  6PRN A;  1BT9 A;  1IZN A;  2IWV A;  2XG6 A;  4GCS A;  1PRN A;  2J4U P;  3LK4 2;  2ERV A;  3PQS A;  5GV0 A;  4U9C A;  2N2L A;  2ODJ A;  4N58 A;  5DL6 A;  3LK3 B;  1MPF A;  4RJX A;  5G38 A;  3TZG A;  3VY9 X;  4AYI D;  2IWW A;  1T16 A;  4JCH A;  4KR8 A;  5GTH O;  2X27 X;  3HOE A;  2KXP B;  2R88 A;  3PF1 A;  4GF4 A;  3DA4 A;  3EMN X;  4O3X B;  2MHL A;  4RLC A;  3UU2 A;  3VY8 X;  3VZW X;  4N74 A;  2R89 A;  2W80 C;  3AA7 B;  3HOL A;  2K0L A;  4BUM X;  4D65 A;  2F1T A;  2LHF A;  2WVP A;  4AFK A;  2R4L A;  2R4N A;  4IL6 O;  2R4P A;  3AAE B;  1P4T A;  1QJ8 A;  3AA0 A;  3FYX A;  4E1T A;  2O4V A;  2XMX A;  3QRC A;  4G75 A;  4AKR A;  1GFP A;  4O3W A;  4FSP A;  3AA1 B;  1T1L A;  2OMF A;  3AA6 A;  3JTY A;  4FT6 A;  4RLB A;  1HXU A;  2J1N A;  2R8A A;  1GFQ A;  2XE1 A;  3PGS A;  4O4X A;  5FVN A;  3UPG A;  2Y0L A;  4PJ0 O;  4QQ1 A;  5B5E O;  7PRN A;  4AKM A;  2PRN A;  3QRA A;  4FZL A;  3BRZ A;  4FOZ A;  4G76 A;  4LSE A;  4CTD A;  3T20 A;  1Q9G A;  3T24 A;  3NJT A;  2XTR A;  4FRX A;  5G3A A;  2ZFG A;  2Y0H A;  3KZI O;  1MM5 A;  3POX A;  3WU2 O;  3VZT X;  2LFU A;  3C5O A;  4C4V A;  2FGR A;  5JDP A;  4FUV A;  4KR4 A;  5TIS O;  1ZHY A;  2AXT O;  1GFO A; 
#chains in the Genus database with same CATH homology
 3WI4 A;  1YS5 A;  4XNK A;  5DL8 A;  4FSO A;  3AA0 B;  1E54 A;  1OPF A;  2KZ7 A;  4AKR B;  2YPV A;  3SY7 A;  3T0S A;  4AYM C;  3POR A;  5G26 A;  4GHB A;  2F1V A;  5D5D A;  1BXW A;  2M07 A;  2Y2X A;  4PUX A;  3SYB A;  5T5F A;  3PQU A;  1IZN B;  1OSM A;  3LK3 A;  2XE3 A;  5PRN A;  4AYE C;  5AFU L;  6PRN A;  3KVD D;  1BH3 A;  2KDY A;  3K19 A;  1GFM A;  2W81 C;  3POQ A;  4RL9 A;  3G7G A;  2GE4 A;  5AFU K;  4FMS A;  4D5U A;  3RBH A;  1ZHZ A;  5DL5 A;  4E1S A;  3AA7 A;  3AAA B;  1H6S 1;  3VE1 A;  4O49 A;  3A2S X;  2N2M A;  3AAA A;  4B61 A;  5ADX L;  1G90 A;  2M06 A;  3POU A;  4RJW A;  3AAE A;  4KRA A;  2K4T A;  2KZ7 B;  3LK2 A;  4GCP A;  3VE2 A;  3O0E A;  4N59 A;  3SY9 A;  4FZN A;  2FGQ X;  3VZU X;  3HWB A;  1ZHX A;  2MNH A;  3NSG A;  4AYN A;  3AA6 B;  4O3Z A;  1Q9F A;  4LSF A;  1ZHW A;  4O4U A;  1MM4 A;  5EE2 A;  4LSI A;  1HXX A;  1ORM A;  1QJP A;  1ZHT A;  2YNK A;  2ZLD A;  4FRT A;  4FZM A;  4JFB A;  5DL7 A;  3SYS A;  5ADX K;  2Y7S A;  4XNL A;  2XE5 A;  5IYU A;  3SZD A;  2KXP A;  4FES A;  4O3Y A;  3V8U A;  2POR A;  1HXT A;  3SZV A;  3DA3 A;  4AYD C;  4F4B A;  3HW9 A;  2KC0 A;  1THQ A;  1GFN A;  4C69 X;  4LSH A;  2JMM A;  3LK4 1;  4D64 A;  4Z3T A;  3LK2 B;  2XE2 A;  4AUI A;  4AZL A;  1PHO A;  4GCQ A;  3GP6 A;  2Y0K A;  3UAQ A;  2XTQ A;  3PRN A;  1QJ9 A;  2QTK A;  3AA1 A;  8PRN A;  1BT9 A;  1IZN A;  4GCS A;  2XG6 A;  1PRN A;  2J4U P;  3LK4 2;  2ERV A;  3PQS A;  5GV0 A;  4U9C A;  2N2L A;  2ODJ A;  4N58 A;  5DL6 A;  3LK3 B;  1MPF A;  4RJX A;  3TZG A;  3VY9 X;  3WI5 A;  4AYI D;  4JCH A;  4KR8 A;  2X27 X;  3HOE A;  2KXP B;  4O3X B;  4GF4 A;  3UU2 A;  3DA4 A;  3EMN X;  3VY8 X;  2MHL A;  4RLC A;  3VZW X;  2W80 C;  3AA7 B;  3HOL A;  2K0L A;  4BUM X;  4D65 A;  2F1T A;  2LHF A;  4AFK A;  3AAE B;  1P4T A;  1QJ8 A;  3AA0 A;  3FYX A;  4E1T A;  2O4V A;  2XMX A;  3QRC A;  4G75 A;  4AKR A;  1GFP A;  4O3W A;  4FSP A;  3AA1 B;  2OMF A;  3AA6 A;  3JTY A;  4FT6 A;  4RLB A;  1HXU A;  2J1N A;  1GFQ A;  2XE1 A;  4O4X A;  3UPG A;  5FVN A;  2Y0L A;  4QQ1 A;  7PRN A;  4AKM A;  2PRN A;  3QRA A;  4FZL A;  4G76 A;  4FOZ A;  4LSE A;  3T20 A;  1Q9G A;  3T24 A;  4FRX A;  2XTR A;  2ZFG A;  2Y0H A;  3POX A;  1MM5 A;  3VZT X;  2LFU A;  3C5O A;  2FGR A;  5JDP A;  4FUV A;  4KR4 A;  1ZHY A;  1GFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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