4FRTA

Crystal structure of pseudomonas aeruginosa occk7 (opdd)
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
389
structure length
370
Chain Sequence
GKAGLELRNFYFNRDYRQPSQSYSEEWAQGFLLRYESGYTEGLFGLGVDALGLLGVRLDSSPERSYSTSDRRAAHDYSSLGLTAKLRVSHSTLKIGTLMPRLPVVQFNDTRLHPQTFQGGLLEVNEIDGLALQFGQLRQVKQRDSTNAEDLGITRGNKRNVSDRFDFAGGTYRWSERLSSSYHYANLEDFYRQHHLGVQHLLPLADDQSLKSDIRWARSTDEGRVNNRALNALFTYRLGGHAFGLGYQRMSGDSGFAYLAGTDPYLVNFVQIGDFANKDERSWQLRYDYDFAAIGLPGLTFMSRYLRGEHIDLLDGGGRGKEWERDTDIAYLVGPLKNLGIKLRNGTFRSDFGNDIDETRLIVSYALPLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
total genus 85
structure length 370
sequence length 389
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4frtA00
4KRAA 3O0EA 1PHOA 3POQA 2XE5A 2K4TA 5JDPA 2ZLDA 1OSMA 5DL5A 2ZFGA 2ODJA 4KR8A 2FGRA 1BH3A 5DL7A 5PRNA 1MPFA 3T0SA 3SZDA 3VZWX 1BT9A 1PRNA 2Y0LA 4RJXA 1GFNA 3JTYA 1E54A 2FGQX 2PORA 4FRXA 3SZVA 1GFPA 2XE1A 4LSIA 3SYBA 3HW9A 4D5UA 3A2SX 3POUA 1GFOA 3NSGA 3VZUX 2O4VA 3WI4A 4GCQA 4C69X 4LSHA 3SY9A 3PRNA 1HXTA 4D64A 4AUIA 4FMSA 4BUMX 2XE2A 1OPFA 3VZTX 3PORA 3POXA 1GFQA 4D65A 4FT6A 2QTKA 1HXUA 4LSFA 3FYXA 3WI5A 3T24A 2Y2XA 2XG6A 2Y0HA 2XE3A 3VY9X 1HXXA 2PRNA 3SY7A 2OMFA 3UPGA 5DL8A 4FOZA 3HWBA 4FSPA 7PRNA 4JFBA 6PRNA 4RJWA 5DL6A 3T20A 1H6S1 1GFMA 2J1NA 3SYSA 4GCPA 4KR4A 3K19A 4LSEA 3UU2A 2Y0KA 4GCSA 4FRTA 3EMNX 3VY8X 2J4UP 8PRNA 4FSOA 5FVNA
chains in the Genus database with same CATH superfamily
5H2FO 4KRAA 3AA7A 3AA1A 1ZHZA 3O0EA 1PHOA 4FESA 4E1TA 2F1TA 1QJPA 3POQA 2XE5A 5D5DA 3UAQA 5T5FA 3V8UA 3HOLA 2K4TA 1IZNA 3NJTA 5JDPA 2R88A 2R4PA 4CTDA 2ZLDA 1OSMA 5DL5A 1G90A 2R4NA 2R4OA 3DA4A 3HOEA 5ADXK 3BRZA 1Q9GA 1ZHXA 2ZFGA 5EE2A 4AKRB 2LFUA 2ODJA 4O4UA 2KC0A 2FGRA 4KR8A 1BH3A 4AZLA 3DWOX 4O3YA 2GE4A 4AFKA 5DL7A 3AA0B 5PRNA 1MPFA 1ORMA 4AYDC 2YNKA 3PF1A 3T0SA 4GHBA 3SZDA 3LK3A 2IWVA 2R4LA 5IYUA 3VZWX 3PGSA 1BT9A 1PRNA 1Q9FA 2JMMA 2Y0LA 4RJXA 5G38A 4N75A 1GFNA 2KXPB 3JTYA 4XNKA 4UB6O 2JQYA 3TZGA 4Z3TA 1E54A 2FGQX 2PORA 3KVDD 4FRXA 4GF4A 3SZVA 4UB8O 5KAIO 1GFPA 2XE1A 4LSIA 3SYBA 5TISO 2N2MA 2KXPA 4O49A 3G7GA 3HW9A 4D5UA 5GTHO 3A0BO 3A2SX 1T16A 2M06A 1GFOA 2N2LA 3DZMA 3NSGA 3POUA 4FZMA 5G26A 2O4VA 3VZUX 3LK2B 4AKMA 2ERVA 3LK41 3WI4A 4FUVA 4GCQA 4C4VB 3LK42 4G76A 4C69X 5G39A 2XTQA 4LSHA 3SY9A 1P4TA 1QJ9A 2WJRA 3AAEB 3PRNA 3LK2A 4AKRA 5GV0A 4F4BA 4AYEC 1HXTA 4C00A 4C4VA 4AYMC 3AA0A 4D64A 3PGUA 4AUIA 5AFUL 2W80C 4FMSA 4O3WA 4BUMX 3AAEA 4U9CA 1ZHWA 2XE2A 1OPFA 3VZTX 3PORA 1THQA 2Y7SA 4XNLA 2KZ7B 3POXA 4PR7A 4O3XB 1GFQA 2WJQA 2KDYA 2X27X 3QRAA 5GTIO 2MHLA 1T1LA 4IL6O 2X9KA 4RL9A 4FT6A 2R8AA 4D65A 3A0HO 3DWNA 4PUXA 4K3BA 5AFUK 2QTKA 2XTRA 1HXUA 2IWWA 2W81C 4LSFA 3AA6B 3FYXA 2WVPA 3WI5A 4AYID 4QQ1A 3PGRA 4FQEA 2Y2XA 3T24A 2M07A 2XG6A 2Y0HA 2XE3A 3AA7B 3QRCA 4RLCA 3VY9X 1HXXA 2PRNA 4O3ZA 3SY7A 2YPVA 2OMFA 4PJ0O 3UPGA 4O4XA 1IZNB 3AA6A 5B66O 3PQSA 5DL8A 4N74A 2F1CX 2XMXA 3BRYA 4K3CA 2F1VA 3VE2A 1S5LO 4FOZA 3HWBA 4JCHA 5G3AA 4RLBA 3GP6A 4FSPA 7PRNA 4N58A 4JFBA 6PRNA 1ZHYA 2LHFA 2MNHA 4RJWA 4FZNA 3LK3B 5DL6A 5E79O 2AXTO 5KAFO 3RBHA 3DA3A 3T20A 4FZLA 3WU2O 3AAAB 1H6S1 1GFMA 2J1NA 2KZ7A 3SYSA 1BXWA 2K0LA 2R89A 3BS0A 3C5OA 4GCPA 4KR4A 3K19A 1MM5A 4N59A 4LSEA 3UU2A 3VE1A 2Y0KA 4B61A 4E1SA 4AYNA 5B5EO 4GCSA 3AA1B 3AAAA 3PQUA 3EMNX 4FRTA 1YS5A 3KZIO 4G75A 3VY8X 1QJ8A 1ZHTA 5ADXL 8PRNA 4FSOA 5FVNA 2J4UP 1MM4A 3JCUO
chains in the Genus database with same CATH topology
4KRAA 3AA7A 3AA1A 1ZHZA 3O0EA 1PHOA 4FESA 4E1TA 2F1TA 1QJPA 3POQA 2XE5A 5D5DA 3UAQA 5T5FA 3V8UA 3HOLA 2K4TA 1IZNA 5JDPA 2ZLDA 1OSMA 5DL5A 1G90A 3DA4A 3HOEA 5ADXK 1Q9GA 1ZHXA 2ZFGA 5EE2A 4AKRB 2LFUA 2ODJA 4O4UA 2KC0A 2FGRA 4KR8A 1BH3A 4AZLA 4O3YA 2GE4A 4AFKA 5DL7A 3AA0B 5PRNA 1MPFA 1ORMA 4AYDC 2YNKA 3T0SA 4GHBA 3SZDA 3LK3A 5IYUA 3VZWX 1BT9A 1PRNA 1Q9FA 2JMMA 2Y0LA 4RJXA 4Z3TA 1GFNA 2KXPB 3JTYA 4XNKA 3TZGA 1E54A 2FGQX 2PORA 3KVDD 4FRXA 4GF4A 3SZVA 1GFPA 2XE1A 4LSIA 3SYBA 2N2MA 2KXPA 4O49A 3G7GA 3HW9A 4D5UA 3A2SX 2M06A 2N2LA 1GFOA 3POUA 3NSGA 4FZMA 5G26A 2O4VA 3VZUX 3LK2B 4AKMA 2ERVA 3LK41 3WI4A 4FUVA 4GCQA 3LK42 4G76A 4C69X 2XTQA 4LSHA 3SY9A 1P4TA 1QJ9A 3AAEB 3PRNA 5GV0A 3LK2A 4AKRA 4F4BA 4AYEC 1HXTA 4AYMC 3AA0A 4D64A 4AUIA 5AFUL 2W80C 4FMSA 4O3WA 4BUMX 3AAEA 4U9CA 1ZHWA 2XE2A 1OPFA 3VZTX 3PORA 1THQA 2Y7SA 4XNLA 2KZ7B 3POXA 4O3XB 1GFQA 2KDYA 2X27X 3QRAA 2MHLA 4RL9A 4D65A 4FT6A 4PUXA 5AFUK 2QTKA 2XTRA 1HXUA 2W81C 4LSFA 3AA6B 3FYXA 3WI5A 4AYID 4QQ1A 3T24A 2Y2XA 2M07A 2XG6A 2Y0HA 2XE3A 3AA7B 3QRCA 4RLCA 3VY9X 1HXXA 2PRNA 4O3ZA 3SY7A 2YPVA 2OMFA 3UPGA 4O4XA 1IZNB 3AA6A 3PQSA 5DL8A 2XMXA 3VE2A 2F1VA 4FOZA 3HWBA 4JCHA 4RLBA 3GP6A 4FSPA 7PRNA 4N58A 4JFBA 6PRNA 1ZHYA 2LHFA 2MNHA 4RJWA 4FZNA 3LK3B 5DL6A 3RBHA 3T20A 3DA3A 4FZLA 3AAAB 1H6S1 1GFMA 2J1NA 2KZ7A 3SYSA 1BXWA 2K0LA 3C5OA 4GCPA 4KR4A 3K19A 1MM5A 4N59A 4LSEA 3UU2A 3VE1A 2Y0KA 4B61A 4E1SA 4AYNA 4GCSA 3AA1B 3AAAA 3PQUA 3EMNX 4FRTA 1YS5A 4G75A 3VY8X 1QJ8A 1ZHTA 5ADXL 8PRNA 4FSOA 5FVNA 2J4UP 1MM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KRA A;  3O0E A;  1PHO A;  3POQ A;  2XE5 A;  2K4T A;  5JDP A;  2ZLD A;  1OSM A;  5DL5 A;  2ZFG A;  2ODJ A;  4KR8 A;  2FGR A;  1BH3 A;  5DL7 A;  5PRN A;  1MPF A;  3T0S A;  3SZD A;  3VZW X;  1BT9 A;  1PRN A;  2Y0L A;  4RJX A;  1GFN A;  3JTY A;  1E54 A;  2FGQ X;  2POR A;  4FRX A;  3SZV A;  1GFP A;  2XE1 A;  4LSI A;  3SYB A;  3HW9 A;  4D5U A;  3A2S X;  3POU A;  1GFO A;  3NSG A;  3VZU X;  2O4V A;  3WI4 A;  4GCQ A;  4C69 X;  4LSH A;  3SY9 A;  3PRN A;  1HXT A;  4D64 A;  4AUI A;  4FMS A;  4BUM X;  2XE2 A;  1OPF A;  3VZT X;  3POR A;  3POX A;  1GFQ A;  4D65 A;  4FT6 A;  2QTK A;  1HXU A;  4LSF A;  3FYX A;  3WI5 A;  3T24 A;  2Y2X A;  2XG6 A;  2Y0H A;  2XE3 A;  3VY9 X;  1HXX A;  2PRN A;  3SY7 A;  2OMF A;  3UPG A;  5DL8 A;  4FOZ A;  3HWB A;  4FSP A;  7PRN A;  4JFB A;  6PRN A;  4RJW A;  5DL6 A;  3T20 A;  1H6S 1;  1GFM A;  2J1N A;  3SYS A;  4GCP A;  4KR4 A;  3K19 A;  4LSE A;  3UU2 A;  2Y0K A;  4GCS A;  4FRT A;  3EMN X;  3VY8 X;  2J4U P;  8PRN A;  4FSO A;  5FVN A; 
#chains in the Genus database with same CATH topology
 5H2F O;  4KRA A;  3AA7 A;  3AA1 A;  1ZHZ A;  3O0E A;  1PHO A;  4FES A;  4E1T A;  2F1T A;  1QJP A;  3POQ A;  2XE5 A;  5D5D A;  3UAQ A;  5T5F A;  3V8U A;  3HOL A;  2K4T A;  1IZN A;  3NJT A;  5JDP A;  2R88 A;  2R4P A;  4CTD A;  2ZLD A;  1OSM A;  5DL5 A;  1G90 A;  2R4N A;  2R4O A;  3DA4 A;  3HOE A;  5ADX K;  3BRZ A;  1Q9G A;  1ZHX A;  2ZFG A;  5EE2 A;  4AKR B;  2LFU A;  2ODJ A;  4O4U A;  2KC0 A;  2FGR A;  4KR8 A;  1BH3 A;  4AZL A;  3DWO X;  4O3Y A;  2GE4 A;  4AFK A;  5DL7 A;  3AA0 B;  5PRN A;  1MPF A;  1ORM A;  4AYD C;  2YNK A;  3PF1 A;  3T0S A;  4GHB A;  3SZD A;  3LK3 A;  2IWV A;  2R4L A;  5IYU A;  3VZW X;  3PGS A;  1BT9 A;  1PRN A;  1Q9F A;  2JMM A;  2Y0L A;  4RJX A;  5G38 A;  4N75 A;  1GFN A;  2KXP B;  3JTY A;  4XNK A;  4UB6 O;  2JQY A;  3TZG A;  4Z3T A;  1E54 A;  2FGQ X;  2POR A;  3KVD D;  4FRX A;  4GF4 A;  3SZV A;  4UB8 O;  5KAI O;  1GFP A;  2XE1 A;  4LSI A;  3SYB A;  5TIS O;  2N2M A;  2KXP A;  4O49 A;  3G7G A;  3HW9 A;  4D5U A;  5GTH O;  3A0B O;  3A2S X;  1T16 A;  2M06 A;  1GFO A;  2N2L A;  3DZM A;  3NSG A;  3POU A;  4FZM A;  5G26 A;  2O4V A;  3VZU X;  3LK2 B;  4AKM A;  2ERV A;  3LK4 1;  3WI4 A;  4FUV A;  4GCQ A;  4C4V B;  3LK4 2;  4G76 A;  4C69 X;  5G39 A;  2XTQ A;  4LSH A;  3SY9 A;  1P4T A;  1QJ9 A;  2WJR A;  3AAE B;  3PRN A;  3LK2 A;  4AKR A;  5GV0 A;  4F4B A;  4AYE C;  1HXT A;  4C00 A;  4C4V A;  4AYM C;  3AA0 A;  4D64 A;  3PGU A;  4AUI A;  5AFU L;  2W80 C;  4FMS A;  4O3W A;  4BUM X;  3AAE A;  4U9C A;  1ZHW A;  2XE2 A;  1OPF A;  3VZT X;  3POR A;  1THQ A;  2Y7S A;  4XNL A;  2KZ7 B;  3POX A;  4PR7 A;  4O3X B;  1GFQ A;  2WJQ A;  2KDY A;  2X27 X;  3QRA A;  5GTI O;  2MHL A;  1T1L A;  4IL6 O;  2X9K A;  4RL9 A;  4FT6 A;  2R8A A;  4D65 A;  3A0H O;  3DWN A;  4PUX A;  4K3B A;  5AFU K;  2QTK A;  2XTR A;  1HXU A;  2IWW A;  2W81 C;  4LSF A;  3AA6 B;  3FYX A;  2WVP A;  3WI5 A;  4AYI D;  4QQ1 A;  3PGR A;  4FQE A;  2Y2X A;  3T24 A;  2M07 A;  2XG6 A;  2Y0H A;  2XE3 A;  3AA7 B;  3QRC A;  4RLC A;  3VY9 X;  1HXX A;  2PRN A;  4O3Z A;  3SY7 A;  2YPV A;  2OMF A;  4PJ0 O;  3UPG A;  4O4X A;  1IZN B;  3AA6 A;  5B66 O;  3PQS A;  5DL8 A;  4N74 A;  2F1C X;  2XMX A;  3BRY A;  4K3C A;  2F1V A;  3VE2 A;  1S5L O;  4FOZ A;  3HWB A;  4JCH A;  5G3A A;  4RLB A;  3GP6 A;  4FSP A;  7PRN A;  4N58 A;  4JFB A;  6PRN A;  1ZHY A;  2LHF A;  2MNH A;  4RJW A;  4FZN A;  3LK3 B;  5DL6 A;  5E79 O;  2AXT O;  5KAF O;  3RBH A;  3DA3 A;  3T20 A;  4FZL A;  3WU2 O;  3AAA B;  1H6S 1;  1GFM A;  2J1N A;  2KZ7 A;  3SYS A;  1BXW A;  2K0L A;  2R89 A;  3BS0 A;  3C5O A;  4GCP A;  4KR4 A;  3K19 A;  1MM5 A;  4N59 A;  4LSE A;  3UU2 A;  3VE1 A;  2Y0K A;  4B61 A;  4E1S A;  4AYN A;  5B5E O;  4GCS A;  3AA1 B;  3AAA A;  3PQU A;  3EMN X;  4FRT A;  1YS5 A;  3KZI O;  4G75 A;  3VY8 X;  1QJ8 A;  1ZHT A;  5ADX L;  8PRN A;  4FSO A;  5FVN A;  2J4U P;  1MM4 A;  3JCU O; 
#chains in the Genus database with same CATH homology
 4KRA A;  3AA7 A;  3AA1 A;  1ZHZ A;  3O0E A;  1PHO A;  4FES A;  4E1T A;  2F1T A;  1QJP A;  3POQ A;  2XE5 A;  5D5D A;  3UAQ A;  5T5F A;  3V8U A;  3HOL A;  2K4T A;  1IZN A;  5JDP A;  2ZLD A;  1OSM A;  5DL5 A;  1G90 A;  3DA4 A;  3HOE A;  5ADX K;  1Q9G A;  1ZHX A;  2ZFG A;  5EE2 A;  4AKR B;  2LFU A;  2ODJ A;  4O4U A;  2KC0 A;  2FGR A;  4KR8 A;  1BH3 A;  4AZL A;  4O3Y A;  2GE4 A;  4AFK A;  5DL7 A;  3AA0 B;  5PRN A;  1MPF A;  1ORM A;  4AYD C;  2YNK A;  3T0S A;  4GHB A;  3SZD A;  3LK3 A;  5IYU A;  3VZW X;  1BT9 A;  1PRN A;  1Q9F A;  2JMM A;  2Y0L A;  4RJX A;  4Z3T A;  1GFN A;  2KXP B;  3JTY A;  4XNK A;  3TZG A;  1E54 A;  2FGQ X;  2POR A;  3KVD D;  4FRX A;  4GF4 A;  3SZV A;  1GFP A;  2XE1 A;  4LSI A;  3SYB A;  2N2M A;  2KXP A;  4O49 A;  3G7G A;  3HW9 A;  4D5U A;  3A2S X;  2M06 A;  2N2L A;  1GFO A;  3POU A;  3NSG A;  4FZM A;  5G26 A;  2O4V A;  3VZU X;  3LK2 B;  4AKM A;  2ERV A;  3LK4 1;  3WI4 A;  4FUV A;  4GCQ A;  3LK4 2;  4G76 A;  4C69 X;  2XTQ A;  4LSH A;  3SY9 A;  1P4T A;  1QJ9 A;  3AAE B;  3PRN A;  5GV0 A;  3LK2 A;  4AKR A;  4F4B A;  4AYE C;  1HXT A;  4AYM C;  3AA0 A;  4D64 A;  4AUI A;  5AFU L;  2W80 C;  4FMS A;  4O3W A;  4BUM X;  3AAE A;  4U9C A;  1ZHW A;  2XE2 A;  1OPF A;  3VZT X;  3POR A;  1THQ A;  2Y7S A;  4XNL A;  2KZ7 B;  3POX A;  4O3X B;  1GFQ A;  2KDY A;  2X27 X;  3QRA A;  2MHL A;  4RL9 A;  4D65 A;  4FT6 A;  4PUX A;  5AFU K;  2QTK A;  2XTR A;  1HXU A;  2W81 C;  4LSF A;  3AA6 B;  3FYX A;  3WI5 A;  4AYI D;  4QQ1 A;  3T24 A;  2Y2X A;  2M07 A;  2XG6 A;  2Y0H A;  2XE3 A;  3AA7 B;  3QRC A;  4RLC A;  3VY9 X;  1HXX A;  2PRN A;  4O3Z A;  3SY7 A;  2YPV A;  2OMF A;  3UPG A;  4O4X A;  1IZN B;  3AA6 A;  3PQS A;  5DL8 A;  2XMX A;  3VE2 A;  2F1V A;  4FOZ A;  3HWB A;  4JCH A;  4RLB A;  3GP6 A;  4FSP A;  7PRN A;  4N58 A;  4JFB A;  6PRN A;  1ZHY A;  2LHF A;  2MNH A;  4RJW A;  4FZN A;  3LK3 B;  5DL6 A;  3RBH A;  3T20 A;  3DA3 A;  4FZL A;  3AAA B;  1H6S 1;  1GFM A;  2J1N A;  2KZ7 A;  3SYS A;  1BXW A;  2K0L A;  3C5O A;  4GCP A;  4KR4 A;  3K19 A;  1MM5 A;  4N59 A;  4LSE A;  3UU2 A;  3VE1 A;  2Y0K A;  4B61 A;  4E1S A;  4AYN A;  4GCS A;  3AA1 B;  3AAA A;  3PQU A;  3EMN X;  4FRT A;  1YS5 A;  4G75 A;  3VY8 X;  1QJ8 A;  1ZHT A;  5ADX L;  8PRN A;  4FSO A;  5FVN A;  2J4U P;  1MM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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