3HWBA

Cation selective pathway of ompf porin revealed by anomalous diffraction
Total Genus 91
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein, ion transport
molecule keywords Outer membrane protein F
publication title Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction.
pubmed doi rcsb
source organism Escherichia coli
total genus 91
structure length 340
sequence length 340
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3hwbA00
3UU2A 2XE2A 4FSOA 3HWBA 3POXA 1PHOA 4GCQA 2PORA 1GFOA 2XE1A 2FGRA 2XE3A 4D5UA 4FT6A 1BH3A 3VZWX 4BUMX 4KR4A 4GCPA 3POUA 2J1NA 3T24A 2XE5A 6PRNA 3FYXA 4KR8A 1GFQA 1GFMA 4D65A 2OMFA 4LSIA 3EMNX 3A2SX 2Y2XA 3WI5A 1H6S1 3NSGA 4LSHA 3SYSA 2QTKA 2Y0LA 2Y0HA 1HXXA 3PORA 4KRAA 5JDPA 2K4TA 2XG6A 3HW9A 4FRXA 2ODJA 5DL7A 1HXUA 3SZVA 2FGQX 5DL8A 1MPFA 3JTYA 1BT9A 4RJXA 3T20A 5FVNA 1PRNA 3PRNA 4FSPA 4GCSA 4AUIA 4LSFA 3VZUX 5PRNA 3SY7A 3SZDA 3VY9X 4FOZA 3WI4A 2ZFGA 3SY9A 2O4VA 3VY8X 2J4UP 3O0EA 4FMSA 4RJWA 2PRNA 4LSEA 4D64A 1GFPA 5DL5A 2Y0KA 3SYBA 8PRNA 1HXTA 4C69X 2ZLDA 4FRTA 1OPFA 3UPGA 3K19A 3T0SA 1OSMA 1E54A 5DL6A 7PRNA 3VZTX 1GFNA 4JFBA 3POQA
chains in the Genus database with same CATH superfamily
3UU2A 4PUXA 2XE2A 2R88A 2KC0A 3KVDD 4AFKA 1T1LA 2WVPA 4FSOA 5KAIO 5TISO 2R4NA 5GTHO 5IYUA 4B61A 2Y7SA 3HWBA 4FQEA 3POXA 3LK42 1PHOA 3AAAB 2AXTO 2PORA 1GFOA 4GCQA 4PR7A 4QQ1A 4E1TA 2XE1A 2FGRA 1IZNB 2XE3A 4O3XB 4Z3TA 5ADXL 2WJRA 5KAFO 4D5UA 4FT6A 1BH3A 2ERVA 5D5DA 1T16A 4RLBA 3VZWX 4BUMX 4KR4A 4GCPA 2F1CX 1ORMA 1ZHYA 4C00A 4C4VA 4FZMA 3POUA 2J1NA 2M07A 3T24A 2XE5A 3PF1A 4AYNA 6PRNA 4E1SA 1Q9FA 3AA0A 3HOEA 2K0LA 3FYXA 4G75A 3AA7A 4KR8A 2R4PA 3RBHA 1GFQA 2R89A 3DWNA 4GHBA 1QJ8A 1GFMA 5G39A 4D65A 2OMFA 4LSIA 3BS0A 3BRZA 2X27X 3EMNX 3G7GA 4O4XA 4UB8O 4IL6O 3A2SX 2Y2XA 1QJPA 2MHLA 4N75A 2N2LA 1YS5A 3LK41 4AKRA 4F4BA 3V8UA 3WI5A 2XMXA 2IWWA 4N59A 3WU2O 2JMMA 1Q9GA 3AA6A 5G26A 4RLCA 2XTQA 1H6S1 3NSGA 4LSHA 3SYSA 2QTKA 5G38A 4AKMA 3AAEA 2R4OA 2W81C 2Y0LA 4RL9A 2Y0HA 4C4VB 4O3WA 4AYDC 5AFUL 1G90A 1MM5A 1HXXA 2IWVA 3PORA 4KRAA 5JDPA 2K4TA 4N74A 2XG6A 3AA0B 3HW9A 1P4TA 2KZ7A 2F1TA 3LK2B 3HOLA 3AA7B 2N2MA 5B5EO 4AYMC 1ZHTA 4FRXA 4O3ZA 1THQA 2ODJA 5DL7A 3JCUO 5EE2A 1HXUA 4K3CA 5GTIO 5B66O 3SZVA 1MM4A 2FGQX 5DL8A 3BRYA 1MPFA 3JTYA 3QRCA 4CTDA 5GV0A 1ZHWA 4AKRB 3A0HO 4O49A 1BT9A 4FZNA 2KXPA 2WJQA 4RJXA 5T5FA 3DA4A 3T20A 5FVNA 1PRNA 1S5LO 4FZLA 3PRNA 4FSPA 3LK3A 3C5OA 4GCSA 4K3BA 1ZHXA 2GE4A 2MNHA 4O3YA 4AUIA 3NJTA 1ZHZA 4LSFA 2F1VA 3AAEB 3VZUX 5PRNA 3SY7A 3UAQA 3SZDA 4AYEC 5E79O 3VY9X 2R8AA 4FUVA 4FOZA 3WI4A 2ZFGA 4UB6O 4FESA 2O4VA 3SY9A 2KZ7B 4G76A 3PGUA 3PGRA 2XTRA 3VY8X 3PQUA 5AFUK 3DZMA 2J4UP 3O0EA 4FMSA 3PQSA 4RJWA 2W80C 3VE1A 2PRNA 3AA1A 1BXWA 2M06A 4LSEA 1QJ9A 3DA3A 4XNLA 3A0BO 4AZLA 3QRAA 3DWOX 4D64A 2KXPB 1GFPA 4O4UA 2X9KA 2Y0KA 2YNKA 5DL5A 3SYBA 5ADXK 4GF4A 8PRNA 1HXTA 3LK3B 4C69X 3TZGA 2R4LA 2LHFA 2ZLDA 3AA6B 3AAAA 2LFUA 4FRTA 5G3AA 4JCHA 5H2FO 1IZNA 3GP6A 4U9CA 4XNKA 3KZIO 4PJ0O 1OPFA 4AYID 3UPGA 3PGSA 3K19A 3VE2A 3T0SA 1OSMA 1E54A 2JQYA 2KDYA 5DL6A 7PRNA 3LK2A 1GFNA 4JFBA 3VZTX 3POQA 2YPVA 4N58A 3AA1B
chains in the Genus database with same CATH topology
3UU2A 4PUXA 2XE2A 2KC0A 3KVDD 4AFKA 4FSOA 5IYUA 4B61A 2Y7SA 3HWBA 3POXA 3LK42 1PHOA 3AAAB 4GCQA 2PORA 1GFOA 4QQ1A 4E1TA 2XE1A 2FGRA 1IZNB 2XE3A 4O3XB 4Z3TA 5ADXL 4D5UA 4FT6A 1BH3A 2ERVA 5D5DA 5AFUK 4RLBA 3VZWX 4BUMX 4KR4A 4GCPA 1ORMA 1ZHYA 4FZMA 3POUA 2J1NA 2M07A 3T24A 2XE5A 4AYNA 6PRNA 4E1SA 1Q9FA 3AA0A 3HOEA 2K0LA 3FYXA 4G75A 3AA7A 4KR8A 3RBHA 1GFQA 4GHBA 1QJ8A 1GFMA 4D65A 2OMFA 4LSIA 4O4XA 2X27X 3EMNX 3G7GA 3A2SX 2Y2XA 1QJPA 2MHLA 2N2LA 1YS5A 3LK41 4AKRA 4F4BA 3V8UA 3WI5A 2XMXA 4N59A 2JMMA 1Q9GA 3AA6A 5G26A 4RLCA 2XTQA 1H6S1 3NSGA 4LSHA 3SYSA 2QTKA 4AKMA 3AAEA 2W81C 4RL9A 2Y0LA 2Y0HA 4O3WA 4AYDC 5AFUL 1G90A 1MM5A 1HXXA 3PORA 4KRAA 5JDPA 2K4TA 2XG6A 3AA0B 3HW9A 1P4TA 2KZ7A 2F1TA 3LK2B 3HOLA 3AA7B 2N2MA 4AYMC 1ZHTA 4FRXA 4O3ZA 1THQA 2ODJA 5DL7A 5EE2A 1HXUA 3SZVA 1MM4A 2FGQX 5DL8A 1MPFA 3JTYA 3QRCA 5GV0A 1ZHWA 4AKRB 4O49A 1BT9A 4FZNA 2KXPA 4RJXA 5T5FA 3DA4A 3T20A 5FVNA 1PRNA 4FZLA 3PRNA 4FSPA 3LK3A 3C5OA 4GCSA 1ZHXA 2GE4A 2MNHA 4O3YA 4AUIA 1ZHZA 4LSFA 2F1VA 3AAEB 3VZUX 5PRNA 3SY7A 3UAQA 3SZDA 4AYEC 3VY9X 4FUVA 4FOZA 3WI4A 2ZFGA 4FESA 2O4VA 3SY9A 2KZ7B 4G76A 3VY8X 2XTRA 2J4UP 3PQUA 3O0EA 4FMSA 3PQSA 4RJWA 2W80C 3VE1A 2PRNA 3AA1A 1BXWA 2M06A 4LSEA 1QJ9A 3DA3A 4XNLA 4AZLA 3QRAA 4D64A 2KXPB 1GFPA 4O4UA 5DL5A 2Y0KA 2YNKA 5ADXK 3SYBA 4GF4A 8PRNA 1HXTA 3LK3B 4C69X 3TZGA 2LHFA 2ZLDA 3AA6B 3AAAA 2LFUA 4FRTA 4JCHA 1IZNA 3GP6A 4U9CA 4XNKA 1OPFA 4AYID 3UPGA 3K19A 3VE2A 3T0SA 1OSMA 1E54A 2KDYA 5DL6A 7PRNA 3LK2A 1GFNA 4JFBA 3VZTX 3POQA 2YPVA 4N58A 3AA1B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU2 A;  2XE2 A;  4FSO A;  3HWB A;  3POX A;  1PHO A;  4GCQ A;  2POR A;  1GFO A;  2XE1 A;  2FGR A;  2XE3 A;  4D5U A;  4FT6 A;  1BH3 A;  3VZW X;  4BUM X;  4KR4 A;  4GCP A;  3POU A;  2J1N A;  3T24 A;  2XE5 A;  6PRN A;  3FYX A;  4KR8 A;  1GFQ A;  1GFM A;  4D65 A;  2OMF A;  4LSI A;  3EMN X;  3A2S X;  2Y2X A;  3WI5 A;  1H6S 1;  3NSG A;  4LSH A;  3SYS A;  2QTK A;  2Y0L A;  2Y0H A;  1HXX A;  3POR A;  4KRA A;  5JDP A;  2K4T A;  2XG6 A;  3HW9 A;  4FRX A;  2ODJ A;  5DL7 A;  1HXU A;  3SZV A;  2FGQ X;  5DL8 A;  1MPF A;  3JTY A;  1BT9 A;  4RJX A;  3T20 A;  5FVN A;  1PRN A;  3PRN A;  4FSP A;  4GCS A;  4AUI A;  4LSF A;  3VZU X;  5PRN A;  3SY7 A;  3SZD A;  3VY9 X;  4FOZ A;  3WI4 A;  2ZFG A;  3SY9 A;  2O4V A;  3VY8 X;  2J4U P;  3O0E A;  4FMS A;  4RJW A;  2PRN A;  4LSE A;  4D64 A;  1GFP A;  5DL5 A;  2Y0K A;  3SYB A;  8PRN A;  1HXT A;  4C69 X;  2ZLD A;  4FRT A;  1OPF A;  3UPG A;  3K19 A;  3T0S A;  1OSM A;  1E54 A;  5DL6 A;  7PRN A;  3VZT X;  1GFN A;  4JFB A;  3POQ A; 
#chains in the Genus database with same CATH topology
 3UU2 A;  4PUX A;  2XE2 A;  2R88 A;  2KC0 A;  3KVD D;  4AFK A;  1T1L A;  2WVP A;  4FSO A;  5KAI O;  5TIS O;  2R4N A;  5GTH O;  5IYU A;  4B61 A;  2Y7S A;  3HWB A;  4FQE A;  3POX A;  3LK4 2;  1PHO A;  3AAA B;  2AXT O;  2POR A;  1GFO A;  4GCQ A;  4PR7 A;  4QQ1 A;  4E1T A;  2XE1 A;  2FGR A;  1IZN B;  2XE3 A;  4O3X B;  4Z3T A;  5ADX L;  2WJR A;  5KAF O;  4D5U A;  4FT6 A;  1BH3 A;  2ERV A;  5D5D A;  1T16 A;  4RLB A;  3VZW X;  4BUM X;  4KR4 A;  4GCP A;  2F1C X;  1ORM A;  1ZHY A;  4C00 A;  4C4V A;  4FZM A;  3POU A;  2J1N A;  2M07 A;  3T24 A;  2XE5 A;  3PF1 A;  4AYN A;  6PRN A;  4E1S A;  1Q9F A;  3AA0 A;  3HOE A;  2K0L A;  3FYX A;  4G75 A;  3AA7 A;  4KR8 A;  2R4P A;  3RBH A;  1GFQ A;  2R89 A;  3DWN A;  4GHB A;  1QJ8 A;  1GFM A;  5G39 A;  4D65 A;  2OMF A;  4LSI A;  3BS0 A;  3BRZ A;  2X27 X;  3EMN X;  3G7G A;  4O4X A;  4UB8 O;  4IL6 O;  3A2S X;  2Y2X A;  1QJP A;  2MHL A;  4N75 A;  2N2L A;  1YS5 A;  3LK4 1;  4AKR A;  4F4B A;  3V8U A;  3WI5 A;  2XMX A;  2IWW A;  4N59 A;  3WU2 O;  2JMM A;  1Q9G A;  3AA6 A;  5G26 A;  4RLC A;  2XTQ A;  1H6S 1;  3NSG A;  4LSH A;  3SYS A;  2QTK A;  5G38 A;  4AKM A;  3AAE A;  2R4O A;  2W81 C;  2Y0L A;  4RL9 A;  2Y0H A;  4C4V B;  4O3W A;  4AYD C;  5AFU L;  1G90 A;  1MM5 A;  1HXX A;  2IWV A;  3POR A;  4KRA A;  5JDP A;  2K4T A;  4N74 A;  2XG6 A;  3AA0 B;  3HW9 A;  1P4T A;  2KZ7 A;  2F1T A;  3LK2 B;  3HOL A;  3AA7 B;  2N2M A;  5B5E O;  4AYM C;  1ZHT A;  4FRX A;  4O3Z A;  1THQ A;  2ODJ A;  5DL7 A;  3JCU O;  5EE2 A;  1HXU A;  4K3C A;  5GTI O;  5B66 O;  3SZV A;  1MM4 A;  2FGQ X;  5DL8 A;  3BRY A;  1MPF A;  3JTY A;  3QRC A;  4CTD A;  5GV0 A;  1ZHW A;  4AKR B;  3A0H O;  4O49 A;  1BT9 A;  4FZN A;  2KXP A;  2WJQ A;  4RJX A;  5T5F A;  3DA4 A;  3T20 A;  5FVN A;  1PRN A;  1S5L O;  4FZL A;  3PRN A;  4FSP A;  3LK3 A;  3C5O A;  4GCS A;  4K3B A;  1ZHX A;  2GE4 A;  2MNH A;  4O3Y A;  4AUI A;  3NJT A;  1ZHZ A;  4LSF A;  2F1V A;  3AAE B;  3VZU X;  5PRN A;  3SY7 A;  3UAQ A;  3SZD A;  4AYE C;  5E79 O;  3VY9 X;  2R8A A;  4FUV A;  4FOZ A;  3WI4 A;  2ZFG A;  4UB6 O;  4FES A;  2O4V A;  3SY9 A;  2KZ7 B;  4G76 A;  3PGU A;  3PGR A;  2XTR A;  3VY8 X;  3PQU A;  5AFU K;  3DZM A;  2J4U P;  3O0E A;  4FMS A;  3PQS A;  4RJW A;  2W80 C;  3VE1 A;  2PRN A;  3AA1 A;  1BXW A;  2M06 A;  4LSE A;  1QJ9 A;  3DA3 A;  4XNL A;  3A0B O;  4AZL A;  3QRA A;  3DWO X;  4D64 A;  2KXP B;  1GFP A;  4O4U A;  2X9K A;  2Y0K A;  2YNK A;  5DL5 A;  3SYB A;  5ADX K;  4GF4 A;  8PRN A;  1HXT A;  3LK3 B;  4C69 X;  3TZG A;  2R4L A;  2LHF A;  2ZLD A;  3AA6 B;  3AAA A;  2LFU A;  4FRT A;  5G3A A;  4JCH A;  5H2F O;  1IZN A;  3GP6 A;  4U9C A;  4XNK A;  3KZI O;  4PJ0 O;  1OPF A;  4AYI D;  3UPG A;  3PGS A;  3K19 A;  3VE2 A;  3T0S A;  1OSM A;  1E54 A;  2JQY A;  2KDY A;  5DL6 A;  7PRN A;  3LK2 A;  1GFN A;  4JFB A;  3VZT X;  3POQ A;  2YPV A;  4N58 A;  3AA1 B; 
#chains in the Genus database with same CATH homology
 3UU2 A;  4PUX A;  2XE2 A;  2KC0 A;  3KVD D;  4AFK A;  4FSO A;  5IYU A;  4B61 A;  2Y7S A;  3HWB A;  3POX A;  3LK4 2;  1PHO A;  3AAA B;  4GCQ A;  2POR A;  1GFO A;  4QQ1 A;  4E1T A;  2XE1 A;  2FGR A;  1IZN B;  2XE3 A;  4O3X B;  4Z3T A;  5ADX L;  4D5U A;  4FT6 A;  1BH3 A;  2ERV A;  5D5D A;  5AFU K;  4RLB A;  3VZW X;  4BUM X;  4KR4 A;  4GCP A;  1ORM A;  1ZHY A;  4FZM A;  3POU A;  2J1N A;  2M07 A;  3T24 A;  2XE5 A;  4AYN A;  6PRN A;  4E1S A;  1Q9F A;  3AA0 A;  3HOE A;  2K0L A;  3FYX A;  4G75 A;  3AA7 A;  4KR8 A;  3RBH A;  1GFQ A;  4GHB A;  1QJ8 A;  1GFM A;  4D65 A;  2OMF A;  4LSI A;  4O4X A;  2X27 X;  3EMN X;  3G7G A;  3A2S X;  2Y2X A;  1QJP A;  2MHL A;  2N2L A;  1YS5 A;  3LK4 1;  4AKR A;  4F4B A;  3V8U A;  3WI5 A;  2XMX A;  4N59 A;  2JMM A;  1Q9G A;  3AA6 A;  5G26 A;  4RLC A;  2XTQ A;  1H6S 1;  3NSG A;  4LSH A;  3SYS A;  2QTK A;  4AKM A;  3AAE A;  2W81 C;  4RL9 A;  2Y0L A;  2Y0H A;  4O3W A;  4AYD C;  5AFU L;  1G90 A;  1MM5 A;  1HXX A;  3POR A;  4KRA A;  5JDP A;  2K4T A;  2XG6 A;  3AA0 B;  3HW9 A;  1P4T A;  2KZ7 A;  2F1T A;  3LK2 B;  3HOL A;  3AA7 B;  2N2M A;  4AYM C;  1ZHT A;  4FRX A;  4O3Z A;  1THQ A;  2ODJ A;  5DL7 A;  5EE2 A;  1HXU A;  3SZV A;  1MM4 A;  2FGQ X;  5DL8 A;  1MPF A;  3JTY A;  3QRC A;  5GV0 A;  1ZHW A;  4AKR B;  4O49 A;  1BT9 A;  4FZN A;  2KXP A;  4RJX A;  5T5F A;  3DA4 A;  3T20 A;  5FVN A;  1PRN A;  4FZL A;  3PRN A;  4FSP A;  3LK3 A;  3C5O A;  4GCS A;  1ZHX A;  2GE4 A;  2MNH A;  4O3Y A;  4AUI A;  1ZHZ A;  4LSF A;  2F1V A;  3AAE B;  3VZU X;  5PRN A;  3SY7 A;  3UAQ A;  3SZD A;  4AYE C;  3VY9 X;  4FUV A;  4FOZ A;  3WI4 A;  2ZFG A;  4FES A;  2O4V A;  3SY9 A;  2KZ7 B;  4G76 A;  3VY8 X;  2XTR A;  2J4U P;  3PQU A;  3O0E A;  4FMS A;  3PQS A;  4RJW A;  2W80 C;  3VE1 A;  2PRN A;  3AA1 A;  1BXW A;  2M06 A;  4LSE A;  1QJ9 A;  3DA3 A;  4XNL A;  4AZL A;  3QRA A;  4D64 A;  2KXP B;  1GFP A;  4O4U A;  5DL5 A;  2Y0K A;  2YNK A;  5ADX K;  3SYB A;  4GF4 A;  8PRN A;  1HXT A;  3LK3 B;  4C69 X;  3TZG A;  2LHF A;  2ZLD A;  3AA6 B;  3AAA A;  2LFU A;  4FRT A;  4JCH A;  1IZN A;  3GP6 A;  4U9C A;  4XNK A;  1OPF A;  4AYI D;  3UPG A;  3K19 A;  3VE2 A;  3T0S A;  1OSM A;  1E54 A;  2KDY A;  5DL6 A;  7PRN A;  3LK2 A;  1GFN A;  4JFB A;  3VZT X;  3POQ A;  2YPV A;  4N58 A;  3AA1 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...