3HW9A

Cation selective pathway of ompf porin revealed by anomalous x-ray diffraction
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
340
structure length
339
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein, ion transport
source organism Escherichia coli
publication title Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction.
pubmed doi rcsb
molecule keywords Outer membrane protein F
total genus 89
structure length 339
sequence length 340
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3hw9A00
2ZLDA 6PRNA 3K19A 2Y0LA 3VZWX 2XG6A 3PORA 1BH3A 4JFBA 4BUMX 5DL8A 3PRNA 3SYBA 2Y2XA 3WI5A 2ODJA 5PRNA 3T0SA 4C69X 8PRNA 1PHOA 3VY8X 3VZTX 2O4VA 3EMNX 1HXUA 2Y0KA 3VY9X 3A2SX 2XE5A 1E54A 3UPGA 2XE3A 1GFOA 4FT6A 7PRNA 2XE1A 4KR4A 5DL6A 3SYSA 3UU2A 3T24A 4D64A 3SY7A 4LSFA 2J1NA 3SY9A 4FSPA 5FVNA 5DL5A 4RJWA 3SZDA 5DL7A 3POUA 1BT9A 4FOZA 1GFNA 3POXA 3POQA 4D5UA 4D65A 3O0EA 2PORA 2Y0HA 4GCQA 1OSMA 1GFQA 1HXXA 3HW9A 3NSGA 2OMFA 4FRTA 1H6S1 3WI4A 1PRNA 2PRNA 3VZUX 3T20A 3HWBA 2J4UP 4LSIA 2K4TA 1HXTA 2FGRA 5JDPA 4FMSA 4KRAA 1GFMA 3JTYA 4GCPA 4AUIA 2ZFGA 1MPFA 4FRXA 4FSOA 2FGQX 4LSEA 1GFPA 4KR8A 1OPFA 3SZVA 4RJXA 2XE2A 3FYXA 4LSHA 2QTKA 4GCSA
chains in the Genus database with same CATH superfamily
3BS0A 2XTRA 2ZLDA 4AZLA 4PUXA 2IWVA 4FZMA 1IZNA 4N74A 2R4LA 3AAAB 1YS5A 2R88A 2N2MA 6PRNA 1QJ8A 4RL9A 5B66O 2GE4A 3K19A 2Y0LA 3AA6B 2N2LA 2KXPA 2R4PA 2XG6A 3VE1A 3PORA 3VZWX 1BH3A 4RLBA 4XNLA 4JFBA 4BUMX 2W80C 4FZNA 5DL8A 3AA1B 3PRNA 3SYBA 4Z3TA 2Y2XA 1Q9GA 2MHLA 5AFUK 3LK41 4FESA 4O3ZA 2ODJA 5PRNA 3UAQA 3WI5A 4GF4A 4U9CA 4UB6O 4PJ0O 4C4VA 3A0HO 3DWNA 3JCUO 4O3WA 3T0SA 2R4NA 3TZGA 4AKMA 4AYNA 4C69X 8PRNA 1P4TA 1PHOA 2XMXA 4JCHA 3VY8X 3WU2O 3PQUA 3HOLA 1QJ9A 2LFUA 4FUVA 3VZTX 2O4VA 3LK3B 2YNKA 3EMNX 3AAEA 4CTDA 1HXUA 2Y0KA 2YPVA 3VY9X 4AYMC 5GV0A 4RLCA 3A2SX 3KZIO 2WVPA 5AFUL 5D5DA 2XE5A 1E54A 4FZLA 2XE3A 3UPGA 1GFOA 4N75A 3GP6A 5IYUA 3AAAA 4O3XB 3QRCA 2AXTO 2R89A 3KVDD 2XE1A 4FT6A 7PRNA 4KR4A 5DL6A 3SYSA 3UU2A 2MNHA 1MM4A 2JQYA 3AA6A 4N58A 4UB8O 3T24A 2KZ7B 3SY7A 4LSFA 4D64A 2J1NA 3BRYA 5KAFO 3SY9A 2K0LA 4FSPA 5FVNA 5DL5A 4AKRB 4AYEC 3PGRA 5B5EO 1ORMA 5GTHO 2F1VA 2ERVA 2KDYA 3AA1A 3DWOX 4FQEA 4RJWA 4XNKA 3SZDA 3G7GA 2F1TA 5G26A 1ZHWA 5DL7A 4O4UA 3POUA 1BT9A 1GFNA 3A0BO 3NJTA 3AA0B 4FOZA 5EE2A 5G3AA 5ADXK 1BXWA 4PR7A 2W81C 1S5LO 3POXA 5GTIO 5TISO 1THQA 3POQA 4G76A 2X9KA 4D5UA 3O0EA 4D65A 5H2FO 2PORA 2Y0HA 4GCQA 3LK3A 1OSMA 5G38A 1GFQA 1HXXA 3HW9A 3NSGA 4O4XA 4IL6O 2WJQA 3AA7B 2OMFA 3DA4A 4G75A 4FRTA 4E1SA 1H6S1 5ADXL 4E1TA 5T5FA 3WI4A 1PRNA 2IWWA 2PRNA 2Y7SA 3VZUX 3T20A 3DZMA 3LK2B 3HWBA 2KZ7A 3RBHA 4AKRA 1Q9FA 4B61A 2J4UP 1IZNB 3PQSA 4LSIA 1T1LA 2K4TA 2FGRA 1HXTA 2KC0A 5JDPA 4AYDC 2WJRA 4FMSA 4K3CA 1ZHZA 4KRAA 3BRZA 1GFMA 3JTYA 4K3BA 4F4BA 4GCPA 4AUIA 1QJPA 1G90A 3PGUA 2ZFGA 3AA0A 1MPFA 2KXPB 3VE2A 4N59A 4FRXA 4QQ1A 1T16A 4FSOA 1ZHTA 2R4OA 3HOEA 4AYID 2FGQX 2M06A 1ZHXA 4C00A 4LSEA 5E79O 1GFPA 4KR8A 4C4VB 3PGSA 2LHFA 1OPFA 3AA7A 3C5OA 4O49A 2X27X 4O3YA 5KAIO 3QRAA 1MM5A 3SZVA 1ZHYA 4GHBA 2JMMA 3DA3A 2M07A 3LK42 2XE2A 4RJXA 2R8AA 2F1CX 3FYXA 2XTQA 3AAEB 3V8UA 4AFKA 4LSHA 2QTKA 5G39A 3LK2A 4GCSA 3PF1A
chains in the Genus database with same CATH topology
2XTRA 2ZLDA 4AZLA 4PUXA 4FZMA 1IZNA 3AAAB 1YS5A 2N2MA 6PRNA 1QJ8A 4RL9A 2GE4A 3K19A 2Y0LA 3AA6B 2N2LA 2KXPA 3VZWX 2XG6A 3VE1A 3PORA 1BH3A 4RLBA 4XNLA 4JFBA 4BUMX 2W80C 4FZNA 5DL8A 3AA1B 3PRNA 3SYBA 4Z3TA 2Y2XA 1Q9GA 2MHLA 5AFUK 3LK41 4FESA 4O3ZA 2ODJA 5PRNA 3UAQA 3WI5A 4GF4A 4U9CA 4O3WA 3T0SA 3TZGA 4AKMA 4AYNA 4C69X 8PRNA 1P4TA 1PHOA 2XMXA 4JCHA 3VY8X 3PQUA 3HOLA 1QJ9A 2LFUA 4FUVA 3VZTX 2O4VA 3LK3B 2YNKA 3EMNX 3AAEA 1HXUA 2Y0KA 2YPVA 3VY9X 4AYMC 5GV0A 4RLCA 3A2SX 5AFUL 5D5DA 2XE5A 1E54A 4FZLA 2XE3A 3UPGA 1GFOA 3GP6A 5IYUA 3AAAA 4O3XB 3QRCA 4FT6A 7PRNA 3KVDD 2XE1A 4KR4A 5DL6A 3SYSA 3UU2A 2MNHA 1MM4A 4N58A 3AA6A 3T24A 4D64A 2KZ7B 3SY7A 4LSFA 2J1NA 3SY9A 4AKRB 2K0LA 4FSPA 5FVNA 5DL5A 4AYEC 1ORMA 2F1VA 2ERVA 2KDYA 3AA1A 4RJWA 4XNKA 3SZDA 3G7GA 2F1TA 5G26A 1ZHWA 5DL7A 4O4UA 3POUA 1BT9A 1GFNA 4FOZA 5EE2A 3AA0B 5ADXK 1BXWA 2W81C 3POXA 1THQA 3POQA 4G76A 4D5UA 4D65A 3O0EA 2PORA 2Y0HA 4GCQA 3LK3A 1OSMA 1GFQA 1HXXA 3HW9A 3NSGA 4O4XA 3AA7B 2OMFA 3DA4A 4G75A 4FRTA 4E1SA 1H6S1 5ADXL 4E1TA 5T5FA 3WI4A 1PRNA 2PRNA 2Y7SA 3VZUX 3T20A 3LK2B 3HWBA 2KZ7A 3RBHA 4AKRA 1Q9FA 4B61A 2J4UP 1IZNB 3PQSA 4LSIA 2K4TA 2FGRA 1HXTA 2KC0A 5JDPA 4AYDC 4FMSA 1ZHZA 4KRAA 4F4BA 1GFMA 3JTYA 4GCPA 4AUIA 1QJPA 1G90A 2ZFGA 3AA0A 1MPFA 2KXPB 3VE2A 4N59A 4FRXA 4QQ1A 4FSOA 1ZHTA 3HOEA 4AYID 2FGQX 2M06A 1ZHXA 4LSEA 1GFPA 4KR8A 2LHFA 1OPFA 3AA7A 3C5OA 4O49A 2X27X 4O3YA 3QRAA 1MM5A 3SZVA 1ZHYA 4GHBA 2JMMA 3DA3A 2M07A 3LK42 2XE2A 4RJXA 3FYXA 2XTQA 3AAEB 3V8UA 4AFKA 4LSHA 2QTKA 3LK2A 4GCSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZLD A;  6PRN A;  3K19 A;  2Y0L A;  3VZW X;  2XG6 A;  3POR A;  1BH3 A;  4JFB A;  4BUM X;  5DL8 A;  3PRN A;  3SYB A;  2Y2X A;  3WI5 A;  2ODJ A;  5PRN A;  3T0S A;  4C69 X;  8PRN A;  1PHO A;  3VY8 X;  3VZT X;  2O4V A;  3EMN X;  1HXU A;  2Y0K A;  3VY9 X;  3A2S X;  2XE5 A;  1E54 A;  3UPG A;  2XE3 A;  1GFO A;  4FT6 A;  7PRN A;  2XE1 A;  4KR4 A;  5DL6 A;  3SYS A;  3UU2 A;  3T24 A;  4D64 A;  3SY7 A;  4LSF A;  2J1N A;  3SY9 A;  4FSP A;  5FVN A;  5DL5 A;  4RJW A;  3SZD A;  5DL7 A;  3POU A;  1BT9 A;  4FOZ A;  1GFN A;  3POX A;  3POQ A;  4D5U A;  4D65 A;  3O0E A;  2POR A;  2Y0H A;  4GCQ A;  1OSM A;  1GFQ A;  1HXX A;  3HW9 A;  3NSG A;  2OMF A;  4FRT A;  1H6S 1;  3WI4 A;  1PRN A;  2PRN A;  3VZU X;  3T20 A;  3HWB A;  2J4U P;  4LSI A;  2K4T A;  1HXT A;  2FGR A;  5JDP A;  4FMS A;  4KRA A;  1GFM A;  3JTY A;  4GCP A;  4AUI A;  2ZFG A;  1MPF A;  4FRX A;  4FSO A;  2FGQ X;  4LSE A;  1GFP A;  4KR8 A;  1OPF A;  3SZV A;  4RJX A;  2XE2 A;  3FYX A;  4LSH A;  2QTK A;  4GCS A; 
#chains in the Genus database with same CATH topology
 3BS0 A;  2XTR A;  2ZLD A;  4AZL A;  4PUX A;  2IWV A;  4FZM A;  1IZN A;  4N74 A;  2R4L A;  3AAA B;  1YS5 A;  2R88 A;  2N2M A;  6PRN A;  1QJ8 A;  4RL9 A;  5B66 O;  2GE4 A;  3K19 A;  2Y0L A;  3AA6 B;  2N2L A;  2KXP A;  2R4P A;  2XG6 A;  3VE1 A;  3POR A;  3VZW X;  1BH3 A;  4RLB A;  4XNL A;  4JFB A;  4BUM X;  2W80 C;  4FZN A;  5DL8 A;  3AA1 B;  3PRN A;  3SYB A;  4Z3T A;  2Y2X A;  1Q9G A;  2MHL A;  5AFU K;  3LK4 1;  4FES A;  4O3Z A;  2ODJ A;  5PRN A;  3UAQ A;  3WI5 A;  4GF4 A;  4U9C A;  4UB6 O;  4PJ0 O;  4C4V A;  3A0H O;  3DWN A;  3JCU O;  4O3W A;  3T0S A;  2R4N A;  3TZG A;  4AKM A;  4AYN A;  4C69 X;  8PRN A;  1P4T A;  1PHO A;  2XMX A;  4JCH A;  3VY8 X;  3WU2 O;  3PQU A;  3HOL A;  1QJ9 A;  2LFU A;  4FUV A;  3VZT X;  2O4V A;  3LK3 B;  2YNK A;  3EMN X;  3AAE A;  4CTD A;  1HXU A;  2Y0K A;  2YPV A;  3VY9 X;  4AYM C;  5GV0 A;  4RLC A;  3A2S X;  3KZI O;  2WVP A;  5AFU L;  5D5D A;  2XE5 A;  1E54 A;  4FZL A;  2XE3 A;  3UPG A;  1GFO A;  4N75 A;  3GP6 A;  5IYU A;  3AAA A;  4O3X B;  3QRC A;  2AXT O;  2R89 A;  3KVD D;  2XE1 A;  4FT6 A;  7PRN A;  4KR4 A;  5DL6 A;  3SYS A;  3UU2 A;  2MNH A;  1MM4 A;  2JQY A;  3AA6 A;  4N58 A;  4UB8 O;  3T24 A;  2KZ7 B;  3SY7 A;  4LSF A;  4D64 A;  2J1N A;  3BRY A;  5KAF O;  3SY9 A;  2K0L A;  4FSP A;  5FVN A;  5DL5 A;  4AKR B;  4AYE C;  3PGR A;  5B5E O;  1ORM A;  5GTH O;  2F1V A;  2ERV A;  2KDY A;  3AA1 A;  3DWO X;  4FQE A;  4RJW A;  4XNK A;  3SZD A;  3G7G A;  2F1T A;  5G26 A;  1ZHW A;  5DL7 A;  4O4U A;  3POU A;  1BT9 A;  1GFN A;  3A0B O;  3NJT A;  3AA0 B;  4FOZ A;  5EE2 A;  5G3A A;  5ADX K;  1BXW A;  4PR7 A;  2W81 C;  1S5L O;  3POX A;  5GTI O;  5TIS O;  1THQ A;  3POQ A;  4G76 A;  2X9K A;  4D5U A;  3O0E A;  4D65 A;  5H2F O;  2POR A;  2Y0H A;  4GCQ A;  3LK3 A;  1OSM A;  5G38 A;  1GFQ A;  1HXX A;  3HW9 A;  3NSG A;  4O4X A;  4IL6 O;  2WJQ A;  3AA7 B;  2OMF A;  3DA4 A;  4G75 A;  4FRT A;  4E1S A;  1H6S 1;  5ADX L;  4E1T A;  5T5F A;  3WI4 A;  1PRN A;  2IWW A;  2PRN A;  2Y7S A;  3VZU X;  3T20 A;  3DZM A;  3LK2 B;  3HWB A;  2KZ7 A;  3RBH A;  4AKR A;  1Q9F A;  4B61 A;  2J4U P;  1IZN B;  3PQS A;  4LSI A;  1T1L A;  2K4T A;  2FGR A;  1HXT A;  2KC0 A;  5JDP A;  4AYD C;  2WJR A;  4FMS A;  4K3C A;  1ZHZ A;  4KRA A;  3BRZ A;  1GFM A;  3JTY A;  4K3B A;  4F4B A;  4GCP A;  4AUI A;  1QJP A;  1G90 A;  3PGU A;  2ZFG A;  3AA0 A;  1MPF A;  2KXP B;  3VE2 A;  4N59 A;  4FRX A;  4QQ1 A;  1T16 A;  4FSO A;  1ZHT A;  2R4O A;  3HOE A;  4AYI D;  2FGQ X;  2M06 A;  1ZHX A;  4C00 A;  4LSE A;  5E79 O;  1GFP A;  4KR8 A;  4C4V B;  3PGS A;  2LHF A;  1OPF A;  3AA7 A;  3C5O A;  4O49 A;  2X27 X;  4O3Y A;  5KAI O;  3QRA A;  1MM5 A;  3SZV A;  1ZHY A;  4GHB A;  2JMM A;  3DA3 A;  2M07 A;  3LK4 2;  2XE2 A;  4RJX A;  2R8A A;  2F1C X;  3FYX A;  2XTQ A;  3AAE B;  3V8U A;  4AFK A;  4LSH A;  2QTK A;  5G39 A;  3LK2 A;  4GCS A;  3PF1 A; 
#chains in the Genus database with same CATH homology
 2XTR A;  2ZLD A;  4AZL A;  4PUX A;  4FZM A;  1IZN A;  3AAA B;  1YS5 A;  2N2M A;  6PRN A;  1QJ8 A;  4RL9 A;  2GE4 A;  3K19 A;  2Y0L A;  3AA6 B;  2N2L A;  2KXP A;  3VZW X;  2XG6 A;  3VE1 A;  3POR A;  1BH3 A;  4RLB A;  4XNL A;  4JFB A;  4BUM X;  2W80 C;  4FZN A;  5DL8 A;  3AA1 B;  3PRN A;  3SYB A;  4Z3T A;  2Y2X A;  1Q9G A;  2MHL A;  5AFU K;  3LK4 1;  4FES A;  4O3Z A;  2ODJ A;  5PRN A;  3UAQ A;  3WI5 A;  4GF4 A;  4U9C A;  4O3W A;  3T0S A;  3TZG A;  4AKM A;  4AYN A;  4C69 X;  8PRN A;  1P4T A;  1PHO A;  2XMX A;  4JCH A;  3VY8 X;  3PQU A;  3HOL A;  1QJ9 A;  2LFU A;  4FUV A;  3VZT X;  2O4V A;  3LK3 B;  2YNK A;  3EMN X;  3AAE A;  1HXU A;  2Y0K A;  2YPV A;  3VY9 X;  4AYM C;  5GV0 A;  4RLC A;  3A2S X;  5AFU L;  5D5D A;  2XE5 A;  1E54 A;  4FZL A;  2XE3 A;  3UPG A;  1GFO A;  3GP6 A;  5IYU A;  3AAA A;  4O3X B;  3QRC A;  4FT6 A;  7PRN A;  3KVD D;  2XE1 A;  4KR4 A;  5DL6 A;  3SYS A;  3UU2 A;  2MNH A;  1MM4 A;  4N58 A;  3AA6 A;  3T24 A;  4D64 A;  2KZ7 B;  3SY7 A;  4LSF A;  2J1N A;  3SY9 A;  4AKR B;  2K0L A;  4FSP A;  5FVN A;  5DL5 A;  4AYE C;  1ORM A;  2F1V A;  2ERV A;  2KDY A;  3AA1 A;  4RJW A;  4XNK A;  3SZD A;  3G7G A;  2F1T A;  5G26 A;  1ZHW A;  5DL7 A;  4O4U A;  3POU A;  1BT9 A;  1GFN A;  4FOZ A;  5EE2 A;  3AA0 B;  5ADX K;  1BXW A;  2W81 C;  3POX A;  1THQ A;  3POQ A;  4G76 A;  4D5U A;  4D65 A;  3O0E A;  2POR A;  2Y0H A;  4GCQ A;  3LK3 A;  1OSM A;  1GFQ A;  1HXX A;  3HW9 A;  3NSG A;  4O4X A;  3AA7 B;  2OMF A;  3DA4 A;  4G75 A;  4FRT A;  4E1S A;  1H6S 1;  5ADX L;  4E1T A;  5T5F A;  3WI4 A;  1PRN A;  2PRN A;  2Y7S A;  3VZU X;  3T20 A;  3LK2 B;  3HWB A;  2KZ7 A;  3RBH A;  4AKR A;  1Q9F A;  4B61 A;  2J4U P;  1IZN B;  3PQS A;  4LSI A;  2K4T A;  2FGR A;  1HXT A;  2KC0 A;  5JDP A;  4AYD C;  4FMS A;  1ZHZ A;  4KRA A;  4F4B A;  1GFM A;  3JTY A;  4GCP A;  4AUI A;  1QJP A;  1G90 A;  2ZFG A;  3AA0 A;  1MPF A;  2KXP B;  3VE2 A;  4N59 A;  4FRX A;  4QQ1 A;  4FSO A;  1ZHT A;  3HOE A;  4AYI D;  2FGQ X;  2M06 A;  1ZHX A;  4LSE A;  1GFP A;  4KR8 A;  2LHF A;  1OPF A;  3AA7 A;  3C5O A;  4O49 A;  2X27 X;  4O3Y A;  3QRA A;  1MM5 A;  3SZV A;  1ZHY A;  4GHB A;  2JMM A;  3DA3 A;  2M07 A;  3LK4 2;  2XE2 A;  4RJX A;  3FYX A;  2XTQ A;  3AAE B;  3V8U A;  4AFK A;  4LSH A;  2QTK A;  3LK2 A;  4GCS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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