1G90A

Nmr solution structure of outer membrane protein a transmembrane domain: 10 conformers
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
176
structure length
176
Chain Sequence
APKDNTWYTGAKLGFSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDFLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVFRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQFTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Escherichia coli
publication title Structure of outer membrane protein A transmembrane domain by NMR spectroscopy
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN A
total genus 50
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2000-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01389 OmpA_membrane OmpA-like transmembrane domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1g90A00
1MM4A 1QJPA 3GP6A 1BXWA 1G90A 2N2MA 2M07A 2F1TA 1THQA 3QRCA 1Q9FA 1ORMA 1QJ9A 4RLCA 1Q9GA 2K0LA 2M06A 2GE4A 2JMMA 3C5OA 2X27X 2MNHA 1QJ8A 2N2LA 1MM5A 1P4TA 3QRAA 2ERVA 2MHLA 4PUXA 3G7GA 2F1VA 2LHFA
chains in the Genus database with same CATH superfamily
5AFUL 1GFPA 3LK41 1E54A 4FT6A 4LSEA 3TZGA 2R4NA 2Y0KA 2K4TA 3SZVA 1YS5A 3WI4A 1BH3A 4FESA 3PF1A 5GTIO 3UPGA 4AKRB 2R8AA 1H6S1 4O3XB 5DL6A 3AA6B 3JTYA 4FSOA 4AKRA 2KZ7B 2PORA 1QJ9A 4RJXA 4KR4A 3AA6A 4RJWA 1PRNA 5PRNA 4B61A 2KZ7A 2XE3A 1ZHXA 3POXA 5D5DA 2GE4A 3LK2B 2XMXA 3NSGA 3DWNA 3AA1A 4G76A 4O49A 5KAFO 3AA7A 3LK2A 3T20A 2MNHA 1QJ8A 5G39A 2WJQA 3PGRA 1PHOA 3SZDA 5B5EO 4FOZA 3PORA 5KAIO 4FZMA 4UB6O 4C4VB 3PRNA 2ERVA 2MHLA 1GFQA 3DZMA 5T5FA 2R4PA 1MM4A 5ADXK 1QJPA 1HXTA 4AYID 4E1SA 5DL8A 4GCSA 4AYNA 5B66O 2IWWA 3LK3A 4FRTA 4GF4A 2R88A 3BS0A 4FQEA 2KXPB 3VY9X 4C69X 2XE5A 4FSPA 3T0SA 4JFBA 3VY8X 4Z3TA 3BRYA 2KXPA 4N74A 3DA3A 2AXTO 3KVDD 3POQA 7PRNA 1HXXA 1THQA 3AAEB 4XNKA 4E1TA 1S5LO 3O0EA 1MPFA 2R4LA 3AAEA 3NJTA 4K3BA 4RLCA 2R4OA 1Q9GA 3V8UA 2ODJA 1IZNB 3DA4A 4D5UA 2K0LA 2M06A 4O4XA 8PRNA 4RL9A 3SYBA 1IZNA 3AA1B 3HOLA 5G3AA 3SY7A 2X27X 3AA7B 3HOEA 5JDPA 1GFMA 4BUMX 1OPFA 3A0HO 3AA0B 4LSHA 4N59A 5G26A 1ZHYA 2ZFGA 4D65A 3AA0A 3HW9A 4D64A 3T24A 3VZWX 3PGUA 3G7GA 2XE2A 4RLBA 1GFOA 4LSIA 4AZLA 3GP6A 1T1LA 4PR7A 1BXWA 3LK3B 3A2SX 1ZHTA 3KZIO 4GCPA 1G90A 4IL6O 1GFNA 3JCUO 4U9CA 2O4VA 3UAQA 4O3WA 5H2FO 2ZLDA 2YPVA 5AFUK 4XNLA 2XG6A 4G75A 2W80C 3LK42 1ORMA 2WJRA 3SY9A 4KRAA 5E79O 2KC0A 4GCQA 4F4BA 2KDYA 4CTDA 2LFUA 2JMMA 2JQYA 3C5OA 3EMNX 3VZTX 4AYMC 4AUIA 2OMFA 2X9KA 3K19A 5FVNA 2J1NA 3BRZA 4K3CA 1MM5A 3QRAA 4LSFA 5DL5A 5ADXL 3PQSA 3UU2A 2PRNA 2R89A 4PUXA 2YNKA 2F1VA 4FRXA 4FZLA 4QQ1A 2Y0LA 4O3YA 1HXUA 4O4UA 6PRNA 4FZNA 3FYXA 1ZHWA 3HWBA 2N2MA 4N75A 5GTHO 2Y7SA 4N58A 2M07A 2F1TA 2XTRA 3WU2O 3A0BO 4JCHA 5TISO 4AKMA 2Y0HA 3PGSA 3WI5A 2FGQX 3RBHA 3QRCA 4UB8O 2Y2XA 1Q9FA 2WVPA 5EE2A 2FGRA 5DL7A 4AYDC 5IYUA 4FUVA 2W81C 3DWOX 2IWVA 4GHBA 2F1CX 5G38A 2XE1A 1BT9A 1ZHZA 1OSMA 2QTKA 3VE1A 4PJ0O 3AAAB 3VZUX 2XTQA 4C00A 1P4TA 3VE2A 4AFKA 5GV0A 3AAAA 4AYEC 3POUA 3PQUA 4FMSA 4O3ZA 1T16A 4KR8A 4C4VA 2J4UP 2N2LA 2LHFA 3SYSA
chains in the Genus database with same CATH topology
5AFUL 1GFPA 3LK41 1E54A 4FT6A 4LSEA 3TZGA 2Y0KA 2K4TA 3SZVA 1YS5A 3WI4A 1BH3A 4FESA 3UPGA 4AKRB 1H6S1 4O3XB 5DL6A 3AA6B 3JTYA 4FSOA 4AKRA 2KZ7B 2PORA 1QJ9A 4RJXA 4KR4A 3AA6A 4RJWA 1PRNA 5PRNA 4B61A 2KZ7A 2XE3A 1ZHXA 3POXA 5D5DA 2GE4A 3LK2B 2XMXA 3NSGA 4G76A 3AA1A 4O49A 3T20A 3AA7A 3LK2A 2MNHA 1QJ8A 3SZDA 1PHOA 4FOZA 3PORA 4FZMA 3PRNA 2ERVA 2MHLA 1GFQA 5T5FA 1MM4A 5ADXK 1QJPA 1HXTA 4AYID 4E1SA 5DL8A 4GCSA 4AYNA 3LK3A 4FRTA 4GF4A 2KXPB 3VY9X 4C69X 2XE5A 4FSPA 3T0SA 4JFBA 3VY8X 4Z3TA 2KXPA 3DA3A 7PRNA 3KVDD 3POQA 1HXXA 1THQA 3AAEB 4XNKA 4E1TA 3O0EA 1MPFA 4RLCA 3AAEA 3V8UA 1Q9GA 2ODJA 1IZNB 3DA4A 4D5UA 2K0LA 2M06A 4O4XA 8PRNA 4RL9A 3SYBA 1IZNA 3AA1B 3HOLA 3SY7A 2X27X 3AA7B 3HOEA 5JDPA 1GFMA 4BUMX 1OPFA 3AA0B 4LSHA 4N59A 5G26A 1ZHYA 2ZFGA 4D65A 3AA0A 3HW9A 4D64A 3T24A 3VZWX 3G7GA 2XE2A 4RLBA 1GFOA 4LSIA 4AZLA 3GP6A 1BXWA 3LK3B 3A2SX 1ZHTA 4GCPA 1G90A 4U9CA 1GFNA 2O4VA 3UAQA 4O3WA 2ZLDA 2YPVA 5AFUK 4XNLA 2XG6A 4G75A 2W80C 3LK42 1ORMA 3SY9A 4KRAA 2KC0A 4GCQA 4F4BA 2KDYA 2LFUA 2JMMA 3C5OA 3EMNX 3VZTX 4AYMC 4AUIA 2OMFA 3K19A 5FVNA 2J1NA 5ADXL 1MM5A 3QRAA 4LSFA 5DL5A 3PQSA 3UU2A 2PRNA 4PUXA 2YNKA 2F1VA 4FRXA 4FZLA 4QQ1A 2Y0LA 4O3YA 1HXUA 4O4UA 6PRNA 4FZNA 3FYXA 1ZHWA 3HWBA 2N2MA 2Y7SA 4N58A 2M07A 2F1TA 2XTRA 4JCHA 4AKMA 2Y0HA 3WI5A 2FGQX 3RBHA 3QRCA 2Y2XA 1Q9FA 5EE2A 2FGRA 5DL7A 4AYDC 5IYUA 4FUVA 2W81C 4GHBA 2XE1A 1BT9A 1ZHZA 1OSMA 2QTKA 3VE1A 3AAAB 3VZUX 2XTQA 1P4TA 3VE2A 4AFKA 5GV0A 3AAAA 4AYEC 3POUA 3PQUA 4FMSA 4O3ZA 4KR8A 2J4UP 2N2LA 2LHFA 3SYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM4 A;  1QJP A;  3GP6 A;  1BXW A;  1G90 A;  2N2M A;  2M07 A;  2F1T A;  1THQ A;  3QRC A;  1Q9F A;  1ORM A;  1QJ9 A;  4RLC A;  1Q9G A;  2K0L A;  2M06 A;  2GE4 A;  2JMM A;  3C5O A;  2X27 X;  2MNH A;  1QJ8 A;  2N2L A;  1MM5 A;  1P4T A;  3QRA A;  2ERV A;  2MHL A;  4PUX A;  3G7G A;  2F1V A;  2LHF A; 
#chains in the Genus database with same CATH topology
 5AFU L;  1GFP A;  3LK4 1;  1E54 A;  4FT6 A;  4LSE A;  3TZG A;  2R4N A;  2Y0K A;  2K4T A;  3SZV A;  1YS5 A;  3WI4 A;  1BH3 A;  4FES A;  3PF1 A;  5GTI O;  3UPG A;  4AKR B;  2R8A A;  1H6S 1;  4O3X B;  5DL6 A;  3AA6 B;  3JTY A;  4FSO A;  4AKR A;  2KZ7 B;  2POR A;  1QJ9 A;  4RJX A;  4KR4 A;  3AA6 A;  4RJW A;  1PRN A;  5PRN A;  4B61 A;  2KZ7 A;  2XE3 A;  1ZHX A;  3POX A;  5D5D A;  2GE4 A;  3LK2 B;  2XMX A;  3NSG A;  3DWN A;  3AA1 A;  4G76 A;  4O49 A;  5KAF O;  3AA7 A;  3LK2 A;  3T20 A;  2MNH A;  1QJ8 A;  5G39 A;  2WJQ A;  3PGR A;  1PHO A;  3SZD A;  5B5E O;  4FOZ A;  3POR A;  5KAI O;  4FZM A;  4UB6 O;  4C4V B;  3PRN A;  2ERV A;  2MHL A;  1GFQ A;  3DZM A;  5T5F A;  2R4P A;  1MM4 A;  5ADX K;  1QJP A;  1HXT A;  4AYI D;  4E1S A;  5DL8 A;  4GCS A;  4AYN A;  5B66 O;  2IWW A;  3LK3 A;  4FRT A;  4GF4 A;  2R88 A;  3BS0 A;  4FQE A;  2KXP B;  3VY9 X;  4C69 X;  2XE5 A;  4FSP A;  3T0S A;  4JFB A;  3VY8 X;  4Z3T A;  3BRY A;  2KXP A;  4N74 A;  3DA3 A;  2AXT O;  3KVD D;  3POQ A;  7PRN A;  1HXX A;  1THQ A;  3AAE B;  4XNK A;  4E1T A;  1S5L O;  3O0E A;  1MPF A;  2R4L A;  3AAE A;  3NJT A;  4K3B A;  4RLC A;  2R4O A;  1Q9G A;  3V8U A;  2ODJ A;  1IZN B;  3DA4 A;  4D5U A;  2K0L A;  2M06 A;  4O4X A;  8PRN A;  4RL9 A;  3SYB A;  1IZN A;  3AA1 B;  3HOL A;  5G3A A;  3SY7 A;  2X27 X;  3AA7 B;  3HOE A;  5JDP A;  1GFM A;  4BUM X;  1OPF A;  3A0H O;  3AA0 B;  4LSH A;  4N59 A;  5G26 A;  1ZHY A;  2ZFG A;  4D65 A;  3AA0 A;  3HW9 A;  4D64 A;  3T24 A;  3VZW X;  3PGU A;  3G7G A;  2XE2 A;  4RLB A;  1GFO A;  4LSI A;  4AZL A;  3GP6 A;  1T1L A;  4PR7 A;  1BXW A;  3LK3 B;  3A2S X;  1ZHT A;  3KZI O;  4GCP A;  1G90 A;  4IL6 O;  1GFN A;  3JCU O;  4U9C A;  2O4V A;  3UAQ A;  4O3W A;  5H2F O;  2ZLD A;  2YPV A;  5AFU K;  4XNL A;  2XG6 A;  4G75 A;  2W80 C;  3LK4 2;  1ORM A;  2WJR A;  3SY9 A;  4KRA A;  5E79 O;  2KC0 A;  4GCQ A;  4F4B A;  2KDY A;  4CTD A;  2LFU A;  2JMM A;  2JQY A;  3C5O A;  3EMN X;  3VZT X;  4AYM C;  4AUI A;  2OMF A;  2X9K A;  3K19 A;  5FVN A;  2J1N A;  3BRZ A;  4K3C A;  1MM5 A;  3QRA A;  4LSF A;  5DL5 A;  5ADX L;  3PQS A;  3UU2 A;  2PRN A;  2R89 A;  4PUX A;  2YNK A;  2F1V A;  4FRX A;  4FZL A;  4QQ1 A;  2Y0L A;  4O3Y A;  1HXU A;  4O4U A;  6PRN A;  4FZN A;  3FYX A;  1ZHW A;  3HWB A;  2N2M A;  4N75 A;  5GTH O;  2Y7S A;  4N58 A;  2M07 A;  2F1T A;  2XTR A;  3WU2 O;  3A0B O;  4JCH A;  5TIS O;  4AKM A;  2Y0H A;  3PGS A;  3WI5 A;  2FGQ X;  3RBH A;  3QRC A;  4UB8 O;  2Y2X A;  1Q9F A;  2WVP A;  5EE2 A;  2FGR A;  5DL7 A;  4AYD C;  5IYU A;  4FUV A;  2W81 C;  3DWO X;  2IWV A;  4GHB A;  2F1C X;  5G38 A;  2XE1 A;  1BT9 A;  1ZHZ A;  1OSM A;  2QTK A;  3VE1 A;  4PJ0 O;  3AAA B;  3VZU X;  2XTQ A;  4C00 A;  1P4T A;  3VE2 A;  4AFK A;  5GV0 A;  3AAA A;  4AYE C;  3POU A;  3PQU A;  4FMS A;  4O3Z A;  1T16 A;  4KR8 A;  4C4V A;  2J4U P;  2N2L A;  2LHF A;  3SYS A; 
#chains in the Genus database with same CATH homology
 5AFU L;  1GFP A;  3LK4 1;  1E54 A;  4FT6 A;  4LSE A;  3TZG A;  2Y0K A;  2K4T A;  3SZV A;  1YS5 A;  3WI4 A;  1BH3 A;  4FES A;  3UPG A;  4AKR B;  1H6S 1;  4O3X B;  5DL6 A;  3AA6 B;  3JTY A;  4FSO A;  4AKR A;  2KZ7 B;  2POR A;  1QJ9 A;  4RJX A;  4KR4 A;  3AA6 A;  4RJW A;  1PRN A;  5PRN A;  4B61 A;  2KZ7 A;  2XE3 A;  1ZHX A;  3POX A;  5D5D A;  2GE4 A;  3LK2 B;  2XMX A;  3NSG A;  4G76 A;  3AA1 A;  4O49 A;  3T20 A;  3AA7 A;  3LK2 A;  2MNH A;  1QJ8 A;  3SZD A;  1PHO A;  4FOZ A;  3POR A;  4FZM A;  3PRN A;  2ERV A;  2MHL A;  1GFQ A;  5T5F A;  1MM4 A;  5ADX K;  1QJP A;  1HXT A;  4AYI D;  4E1S A;  5DL8 A;  4GCS A;  4AYN A;  3LK3 A;  4FRT A;  4GF4 A;  2KXP B;  3VY9 X;  4C69 X;  2XE5 A;  4FSP A;  3T0S A;  4JFB A;  3VY8 X;  4Z3T A;  2KXP A;  3DA3 A;  7PRN A;  3KVD D;  3POQ A;  1HXX A;  1THQ A;  3AAE B;  4XNK A;  4E1T A;  3O0E A;  1MPF A;  4RLC A;  3AAE A;  3V8U A;  1Q9G A;  2ODJ A;  1IZN B;  3DA4 A;  4D5U A;  2K0L A;  2M06 A;  4O4X A;  8PRN A;  4RL9 A;  3SYB A;  1IZN A;  3AA1 B;  3HOL A;  3SY7 A;  2X27 X;  3AA7 B;  3HOE A;  5JDP A;  1GFM A;  4BUM X;  1OPF A;  3AA0 B;  4LSH A;  4N59 A;  5G26 A;  1ZHY A;  2ZFG A;  4D65 A;  3AA0 A;  3HW9 A;  4D64 A;  3T24 A;  3VZW X;  3G7G A;  2XE2 A;  4RLB A;  1GFO A;  4LSI A;  4AZL A;  3GP6 A;  1BXW A;  3LK3 B;  3A2S X;  1ZHT A;  4GCP A;  1G90 A;  4U9C A;  1GFN A;  2O4V A;  3UAQ A;  4O3W A;  2ZLD A;  2YPV A;  5AFU K;  4XNL A;  2XG6 A;  4G75 A;  2W80 C;  3LK4 2;  1ORM A;  3SY9 A;  4KRA A;  2KC0 A;  4GCQ A;  4F4B A;  2KDY A;  2LFU A;  2JMM A;  3C5O A;  3EMN X;  3VZT X;  4AYM C;  4AUI A;  2OMF A;  3K19 A;  5FVN A;  2J1N A;  5ADX L;  1MM5 A;  3QRA A;  4LSF A;  5DL5 A;  3PQS A;  3UU2 A;  2PRN A;  4PUX A;  2YNK A;  2F1V A;  4FRX A;  4FZL A;  4QQ1 A;  2Y0L A;  4O3Y A;  1HXU A;  4O4U A;  6PRN A;  4FZN A;  3FYX A;  1ZHW A;  3HWB A;  2N2M A;  2Y7S A;  4N58 A;  2M07 A;  2F1T A;  2XTR A;  4JCH A;  4AKM A;  2Y0H A;  3WI5 A;  2FGQ X;  3RBH A;  3QRC A;  2Y2X A;  1Q9F A;  5EE2 A;  2FGR A;  5DL7 A;  4AYD C;  5IYU A;  4FUV A;  2W81 C;  4GHB A;  2XE1 A;  1BT9 A;  1ZHZ A;  1OSM A;  2QTK A;  3VE1 A;  3AAA B;  3VZU X;  2XTQ A;  1P4T A;  3VE2 A;  4AFK A;  5GV0 A;  3AAA A;  4AYE C;  3POU A;  3PQU A;  4FMS A;  4O3Z A;  4KR8 A;  2J4U P;  2N2L A;  2LHF A;  3SYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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