1T1LA

Crystal structure of the long-chain fatty acid transporter fadl
Total Genus 102
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
421
structure length
421
Chain Sequence
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lipid transport
molecule keywords Long-chain fatty acid transport protein
publication title Crystal structure of the long-chain fatty acid transporter FadL.
pubmed doi rcsb
source organism Escherichia coli
total genus 102
structure length 421
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-04-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 1t1lA00
1T16A 3PGRA 1T1LA 2R88A 3PF1A 2R4NA 3BRZA 3PGSA 3BS0A 2R89A 2R4OA 2R4LA 2R8AA 3BRYA 3DWNA 2R4PA 3PGUA 3DWOX
chains in the Genus database with same CATH superfamily
3C5OA 1BXWA 1MM4A 3SYBA 1GFOA 1T1LA 2ODJA 4AYID 4PJ0O 5FVNA 5KAFO 2Y7SA 4GF4A 3WI4A 1G90A 1MM5A 1P4TA 4FRXA 5KAIO 4N74A 1THQA 5E79O 2JMMA 5DL7A 1E54A 4GCPA 5D5DA 4O4XA 4LSEA 5DL6A 2KZ7B 4LSIA 2PRNA 2YNKA 3PGRA 4FRTA 4FQEA 1PHOA 3FYXA 2XE2A 3QRCA 5DL8A 2Y2XA 1Q9FA 2XTRA 4RLBA 2MHLA 1PRNA 3HW9A 2XG6A 4RJWA 2FGQX 1GFMA 3PGSA 4KRAA 2XE1A 3WI5A 1IZNA 3BRZA 4G76A 2Y0HA 2R89A 2PORA 4KR8A 2J1NA 4AYEC 1OSMA 1GFQA 2WVPA 5AFUL 4N58A 6PRNA 2Y0KA 4N59A 4RL9A 3UAQA 3HWBA 3DA3A 3BS0A 4AYMC 5H2FO 2IWVA 4O3ZA 4FZNA 5EE2A 2ZLDA 3G7GA 3SY9A 3WU2O 4AYDC 4C69X 2KXPA 1QJ9A 2OMFA 2QTKA 4QQ1A 4Z3TA 2GE4A 4FSPA 4FESA 2AXTO 4FZMA 4RLCA 2R4LA 2R8AA 4O49A 5ADXK 5IYUA 3T20A 2KDYA 2W80C 3AA7A 4C00A 2JQYA 4D64A 3AA1A 4FT6A 4C4VA 2XE3A 3VZWX 2R88A 2KC0A 3A0BO 3PORA 1HXTA 3PQSA 4K3CA 4UB8O 3AA0A 5G26A 1MPFA 2R4OA 3DZMA 1Q9GA 1HXUA 3VZTX 4D65A 4F4BA 1H6S1 3DWOX 1YS5A 1OPFA 2W81C 1IZNB 1S5LO 2X9KA 3K19A 3PF1A 4G75A 2F1TA 2F1CX 4IL6O 1QJPA 4LSFA 4AKMA 1QJ8A 2F1VA 2ZFGA 3HOLA 2MNHA 3SZVA 3HOEA 3DA4A 4K3BA 3SYSA 3T0SA 2WJQA 1BT9A 4AKRA 3GP6A 1GFPA 3JCUO 4PUXA 2XMXA 2KXPB 3PGUA 3VE1A 5JDPA 4XNLA 4AFKA 3NSGA 2Y0LA 3POXA 4E1TA 2WJRA 2LFUA 2X27X 3A0HO 3VE2A 3VZUX 3AA7B 3AA1B 3LK42 4AYNA 4C4VB 1ORMA 2XTQA 4N75A 4XNKA 3VY8X 3LK2A 3AA6A 3AA0B 3AAEA 4LSHA 3O0EA 3KVDD 3LK3A 3LK41 4KR4A 4BUMX 4GCQA 5GTHO 1ZHYA 3EMNX 3T24A 2R4NA 7PRNA 1BH3A 3BRYA 2ERVA 4O4UA 5GV0A 2LHFA 5PRNA 3AAAA 4D5UA 4O3XB 2O4VA 4UB6O 4JCHA 3SY7A 3SZDA 4RJXA 5AFUK 4O3YA 4FOZA 5T5FA 5DL5A 1ZHXA 3POUA 3DWNA 5G3AA 4AKRB 5G38A 2M07A 4JFBA 1T16A 3UPGA 3RBHA 4PR7A 5B66O 3JTYA 4CTDA 5G39A 2K0LA 5ADXL 2FGRA 2YPVA 3PRNA 4GCSA 5GTIO 4AUIA 4E1SA 3A2SX 1ZHTA 2KZ7A 3POQA 8PRNA 4AZLA 4U9CA 3UU2A 3V8UA 5TISO 1ZHWA 2N2MA 3LK2B 3AA6B 3QRAA 3AAEB 4O3WA 3PQUA 3TZGA 2R4PA 3LK3B 4FUVA 1HXXA 3NJTA 4FMSA 2J4UP 4FSOA 2XE5A 3VY9X 3KZIO 4B61A 2K4TA 4FZLA 4GHBA 5B5EO 1GFNA 2IWWA 2M06A 2N2LA 3AAAB 1ZHZA
chains in the Genus database with same CATH topology
1T16A 3PGRA 1T1LA 2R88A 3PF1A 2R4NA 3BRZA 3PGSA 3BS0A 2R89A 2R4OA 2R4LA 2R8AA 3BRYA 3DWNA 2R4PA 3PGUA 3DWOX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T16 A;  3PGR A;  1T1L A;  2R88 A;  3PF1 A;  2R4N A;  3BRZ A;  3PGS A;  3BS0 A;  2R89 A;  2R4O A;  2R4L A;  2R8A A;  3BRY A;  3DWN A;  2R4P A;  3PGU A;  3DWO X; 
#chains in the Genus database with same CATH topology
 3C5O A;  1BXW A;  1MM4 A;  3SYB A;  1GFO A;  1T1L A;  2ODJ A;  4AYI D;  4PJ0 O;  5FVN A;  5KAF O;  2Y7S A;  4GF4 A;  3WI4 A;  1G90 A;  1MM5 A;  1P4T A;  4FRX A;  5KAI O;  4N74 A;  1THQ A;  5E79 O;  2JMM A;  5DL7 A;  1E54 A;  4GCP A;  5D5D A;  4O4X A;  4LSE A;  5DL6 A;  2KZ7 B;  4LSI A;  2PRN A;  2YNK A;  3PGR A;  4FRT A;  4FQE A;  1PHO A;  3FYX A;  2XE2 A;  3QRC A;  5DL8 A;  2Y2X A;  1Q9F A;  2XTR A;  4RLB A;  2MHL A;  1PRN A;  3HW9 A;  2XG6 A;  4RJW A;  2FGQ X;  1GFM A;  3PGS A;  4KRA A;  2XE1 A;  3WI5 A;  1IZN A;  3BRZ A;  4G76 A;  2Y0H A;  2R89 A;  2POR A;  4KR8 A;  2J1N A;  4AYE C;  1OSM A;  1GFQ A;  2WVP A;  5AFU L;  4N58 A;  6PRN A;  2Y0K A;  4N59 A;  4RL9 A;  3UAQ A;  3HWB A;  3DA3 A;  3BS0 A;  4AYM C;  5H2F O;  2IWV A;  4O3Z A;  4FZN A;  5EE2 A;  2ZLD A;  3G7G A;  3SY9 A;  3WU2 O;  4AYD C;  4C69 X;  2KXP A;  1QJ9 A;  2OMF A;  2QTK A;  4QQ1 A;  4Z3T A;  2GE4 A;  4FSP A;  4FES A;  2AXT O;  4FZM A;  4RLC A;  2R4L A;  2R8A A;  4O49 A;  5ADX K;  5IYU A;  3T20 A;  2KDY A;  2W80 C;  3AA7 A;  4C00 A;  2JQY A;  4D64 A;  3AA1 A;  4FT6 A;  4C4V A;  2XE3 A;  3VZW X;  2R88 A;  2KC0 A;  3A0B O;  3POR A;  1HXT A;  3PQS A;  4K3C A;  4UB8 O;  3AA0 A;  5G26 A;  1MPF A;  2R4O A;  3DZM A;  1Q9G A;  1HXU A;  3VZT X;  4D65 A;  4F4B A;  1H6S 1;  3DWO X;  1YS5 A;  1OPF A;  2W81 C;  1IZN B;  1S5L O;  2X9K A;  3K19 A;  3PF1 A;  4G75 A;  2F1T A;  2F1C X;  4IL6 O;  1QJP A;  4LSF A;  4AKM A;  1QJ8 A;  2F1V A;  2ZFG A;  3HOL A;  2MNH A;  3SZV A;  3HOE A;  3DA4 A;  4K3B A;  3SYS A;  3T0S A;  2WJQ A;  1BT9 A;  4AKR A;  3GP6 A;  1GFP A;  3JCU O;  4PUX A;  2XMX A;  2KXP B;  3PGU A;  3VE1 A;  5JDP A;  4XNL A;  4AFK A;  3NSG A;  2Y0L A;  3POX A;  4E1T A;  2WJR A;  2LFU A;  2X27 X;  3A0H O;  3VE2 A;  3VZU X;  3AA7 B;  3AA1 B;  3LK4 2;  4AYN A;  4C4V B;  1ORM A;  2XTQ A;  4N75 A;  4XNK A;  3VY8 X;  3LK2 A;  3AA6 A;  3AA0 B;  3AAE A;  4LSH A;  3O0E A;  3KVD D;  3LK3 A;  3LK4 1;  4KR4 A;  4BUM X;  4GCQ A;  5GTH O;  1ZHY A;  3EMN X;  3T24 A;  2R4N A;  7PRN A;  1BH3 A;  3BRY A;  2ERV A;  4O4U A;  5GV0 A;  2LHF A;  5PRN A;  3AAA A;  4D5U A;  4O3X B;  2O4V A;  4UB6 O;  4JCH A;  3SY7 A;  3SZD A;  4RJX A;  5AFU K;  4O3Y A;  4FOZ A;  5T5F A;  5DL5 A;  1ZHX A;  3POU A;  3DWN A;  5G3A A;  4AKR B;  5G38 A;  2M07 A;  4JFB A;  1T16 A;  3UPG A;  3RBH A;  4PR7 A;  5B66 O;  3JTY A;  4CTD A;  5G39 A;  2K0L A;  5ADX L;  2FGR A;  2YPV A;  3PRN A;  4GCS A;  5GTI O;  4AUI A;  4E1S A;  3A2S X;  1ZHT A;  2KZ7 A;  3POQ A;  8PRN A;  4AZL A;  4U9C A;  3UU2 A;  3V8U A;  5TIS O;  1ZHW A;  2N2M A;  3LK2 B;  3AA6 B;  3QRA A;  3AAE B;  4O3W A;  3PQU A;  3TZG A;  2R4P A;  3LK3 B;  4FUV A;  1HXX A;  3NJT A;  4FMS A;  2J4U P;  4FSO A;  2XE5 A;  3VY9 X;  3KZI O;  4B61 A;  2K4T A;  4FZL A;  4GHB A;  5B5E O;  1GFN A;  2IWW A;  2M06 A;  2N2L A;  3AAA B;  1ZHZ A; 
#chains in the Genus database with same CATH homology
 1T16 A;  3PGR A;  1T1L A;  2R88 A;  3PF1 A;  2R4N A;  3BRZ A;  3PGS A;  3BS0 A;  2R89 A;  2R4O A;  2R4L A;  2R8A A;  3BRY A;  3DWN A;  2R4P A;  3PGU A;  3DWO X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...