2X9KA

Structure of a e.coli porin
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
278
structure length
278
Chain Sequence
b'RNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGADFNRVGLFYGYDFQNGLSVSLEYAFEWQDADEGDSDKFHYAGVGVNYSF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Correlation between the Ompg Secondary Structure and its Ph-Dependent Alterations Monitored by Ftir.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN G
source organism Escherichia coli
molecule tags Transport protein
total genus 70
structure length 278
sequence length 278
ec nomenclature
pdb deposition date 2010-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2x9kA00
2X9KA 2F1CX 2WJQA 2WVPA 2IWWA 4CTDA 4PR7A 2IWVA 4FQEA 2WJRA 2JQYA
chains in the Genus database with same CATH superfamily
1HXXA 4FUVA 4O3WA 3C5OA 2OMFA 4G75A 4O4XA 3EMNX 4U9CA 3AAAA 5G26A 4PUXA 5ADXK 3A0HO 3POXA 3AA6A 3VZWX 2F1CX 2XTQA 4FZMA 3BRYA 4RLCA 2IWWA 1E54A 2N2MA 4FQEA 3HW9A 2KDYA 1BH3A 1ZHZA 3AAAB 5FVNA 3UPGA 4C00A 5T5FA 2XE3A 1HXUA 2FGQX 3KZIO 4FZNA 3VZTX 1ZHYA 1QJ9A 3SY9A 2J4UP 2Y2XA 3PF1A 4N74A 1GFQA 1GFMA 3LK2A 1T16A 4IL6O 3VY8X 4E1SA 4GF4A 3WI5A 3AA1A 4F4BA 1ORMA 4C69X 2K4TA 3AA7A 5GV0A 2XE2A 5DL7A 1ZHTA 2QTKA 2R8AA 2JQYA 4LSEA 3A0BO 3LK3A 4RJXA 4AUIA 2R4LA 3HOLA 4AYDC 1S5LO 4CTDA 5AFUL 3LK2B 3UU2A 4UB6O 3SYBA 2WJRA 5KAIO 2Y7SA 2PORA 3AA1B 4KR8A 1IZNA 3VZUX 4FRXA 4D64A 3AA7B 4LSIA 4E1TA 4O3XB 1PRNA 2N2LA 2WVPA 2Y0LA 3LK3B 3PORA 2MNHA 3PGUA 4XNKA 2J1NA 2KC0A 3V8UA 4AYEC 2XG6A 3T20A 3TZGA 1MM4A 1T1LA 1THQA 3DA4A 1PHOA 5KAFO 2X9KA 2YPVA 2ZFGA 2ERVA 3LK42 1IZNB 5DL8A 5PRNA 4AYID 7PRNA 3T24A 3WI4A 5JDPA 1OPFA 4N75A 2X27X 4B61A 3BRZA 1P4TA 1BXWA 2LFUA 3BS0A 5B5EO 2KXPB 1ZHXA 3JCUO 3PGRA 4FT6A 5G39A 3PGSA 2AXTO 4AFKA 2ODJA 1HXTA 4C4VA 1OSMA 2XMXA 4PJ0O 2IWVA 1H6S1 3HWBA 4O3YA 3VE2A 1G90A 5G38A 3T0SA 3HOEA 4RL9A 3RBHA 4LSFA 4AKMA 2WJQA 4N58A 3A2SX 2O4VA 1Q9GA 4XNLA 4D5UA 5E79O 2K0LA 3O0EA 4C4VB 2Y0HA 3DWNA 3K19A 2XTRA 4AZLA 3NJTA 3DWOX 4FMSA 4FESA 4Z3TA 2KXPA 5GTHO 3SYSA 2W80C 4AKRB 3AA0A 1MM5A 5DL5A 2R4PA 5DL6A 3SZDA 2M06A 2F1VA 4RJWA 2LHFA 4FZLA 1GFOA 6PRNA 2Y0KA 4GCSA 2R4NA 4FSOA 2F1TA 3DZMA 4N59A 8PRNA 3PQUA 2GE4A 2R89A 3SY7A 3DA3A 4KRAA 4GCPA 3AA0B 1Q9FA 2ZLDA 3PRNA 2YNKA 4LSHA 3POQA 2KZ7B 4AYNA 4G76A 5ADXL 1ZHWA 2FGRA 3GP6A 4D65A 5TISO 2R88A 4FRTA 4JCHA 2R4OA 4GHBA 1QJ8A 3NSGA 1BT9A 4K3BA 5AFUK 4AKRA 3PQSA 4PR7A 4QQ1A 3SZVA 3UAQA 3AAEA 3VY9X 2XE1A 5GTIO 3AA6B 4FSPA 4JFBA 3JTYA 4O3ZA 4KR4A 1GFNA 3QRAA 3LK41 4UB8O 1YS5A 4RLBA 3WU2O 1GFPA 3KVDD 2M07A 3VE1A 4K3CA 2JMMA 4O4UA 5D5DA 4BUMX 5B66O 2KZ7A 5EE2A 5G3AA 2XE5A 3QRCA 3AAEB 1MPFA 1QJPA 2MHLA 3POUA 4FOZA 4GCQA 3FYXA 4AYMC 5IYUA 2W81C 5H2FO 3G7GA 2PRNA 4O49A
chains in the Genus database with same CATH topology
2X9KA 2F1CX 2WJQA 2WVPA 2IWWA 4CTDA 4PR7A 2IWVA 4FQEA 2WJRA 2JQYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X9K A;  2F1C X;  2WJQ A;  2WVP A;  2IWW A;  4CTD A;  4PR7 A;  2IWV A;  4FQE A;  2WJR A;  2JQY A; 
#chains in the Genus database with same CATH topology
 1HXX A;  4FUV A;  4O3W A;  3C5O A;  2OMF A;  4G75 A;  4O4X A;  3EMN X;  4U9C A;  3AAA A;  5G26 A;  4PUX A;  5ADX K;  3A0H O;  3POX A;  3AA6 A;  3VZW X;  2F1C X;  2XTQ A;  4FZM A;  3BRY A;  4RLC A;  2IWW A;  1E54 A;  2N2M A;  4FQE A;  3HW9 A;  2KDY A;  1BH3 A;  1ZHZ A;  3AAA B;  5FVN A;  3UPG A;  4C00 A;  5T5F A;  2XE3 A;  1HXU A;  2FGQ X;  3KZI O;  4FZN A;  3VZT X;  1ZHY A;  1QJ9 A;  3SY9 A;  2J4U P;  2Y2X A;  3PF1 A;  4N74 A;  1GFQ A;  1GFM A;  3LK2 A;  1T16 A;  4IL6 O;  3VY8 X;  4E1S A;  4GF4 A;  3WI5 A;  3AA1 A;  4F4B A;  1ORM A;  4C69 X;  2K4T A;  3AA7 A;  5GV0 A;  2XE2 A;  5DL7 A;  1ZHT A;  2QTK A;  2R8A A;  2JQY A;  4LSE A;  3A0B O;  3LK3 A;  4RJX A;  4AUI A;  2R4L A;  3HOL A;  4AYD C;  1S5L O;  4CTD A;  5AFU L;  3LK2 B;  3UU2 A;  4UB6 O;  3SYB A;  2WJR A;  5KAI O;  2Y7S A;  2POR A;  3AA1 B;  4KR8 A;  1IZN A;  3VZU X;  4FRX A;  4D64 A;  3AA7 B;  4LSI A;  4E1T A;  4O3X B;  1PRN A;  2N2L A;  2WVP A;  2Y0L A;  3LK3 B;  3POR A;  2MNH A;  3PGU A;  4XNK A;  2J1N A;  2KC0 A;  3V8U A;  4AYE C;  2XG6 A;  3T20 A;  3TZG A;  1MM4 A;  1T1L A;  1THQ A;  3DA4 A;  1PHO A;  5KAF O;  2X9K A;  2YPV A;  2ZFG A;  2ERV A;  3LK4 2;  1IZN B;  5DL8 A;  5PRN A;  4AYI D;  7PRN A;  3T24 A;  3WI4 A;  5JDP A;  1OPF A;  4N75 A;  2X27 X;  4B61 A;  3BRZ A;  1P4T A;  1BXW A;  2LFU A;  3BS0 A;  5B5E O;  2KXP B;  1ZHX A;  3JCU O;  3PGR A;  4FT6 A;  5G39 A;  3PGS A;  2AXT O;  4AFK A;  2ODJ A;  1HXT A;  4C4V A;  1OSM A;  2XMX A;  4PJ0 O;  2IWV A;  1H6S 1;  3HWB A;  4O3Y A;  3VE2 A;  1G90 A;  5G38 A;  3T0S A;  3HOE A;  4RL9 A;  3RBH A;  4LSF A;  4AKM A;  2WJQ A;  4N58 A;  3A2S X;  2O4V A;  1Q9G A;  4XNL A;  4D5U A;  5E79 O;  2K0L A;  3O0E A;  4C4V B;  2Y0H A;  3DWN A;  3K19 A;  2XTR A;  4AZL A;  3NJT A;  3DWO X;  4FMS A;  4FES A;  4Z3T A;  2KXP A;  5GTH O;  3SYS A;  2W80 C;  4AKR B;  3AA0 A;  1MM5 A;  5DL5 A;  2R4P A;  5DL6 A;  3SZD A;  2M06 A;  2F1V A;  4RJW A;  2LHF A;  4FZL A;  1GFO A;  6PRN A;  2Y0K A;  4GCS A;  2R4N A;  4FSO A;  2F1T A;  3DZM A;  4N59 A;  8PRN A;  3PQU A;  2GE4 A;  2R89 A;  3SY7 A;  3DA3 A;  4KRA A;  4GCP A;  3AA0 B;  1Q9F A;  2ZLD A;  3PRN A;  2YNK A;  4LSH A;  3POQ A;  2KZ7 B;  4AYN A;  4G76 A;  5ADX L;  1ZHW A;  2FGR A;  3GP6 A;  4D65 A;  5TIS O;  2R88 A;  4FRT A;  4JCH A;  2R4O A;  4GHB A;  1QJ8 A;  3NSG A;  1BT9 A;  4K3B A;  5AFU K;  4AKR A;  3PQS A;  4PR7 A;  4QQ1 A;  3SZV A;  3UAQ A;  3AAE A;  3VY9 X;  2XE1 A;  5GTI O;  3AA6 B;  4FSP A;  4JFB A;  3JTY A;  4O3Z A;  4KR4 A;  1GFN A;  3QRA A;  3LK4 1;  4UB8 O;  1YS5 A;  4RLB A;  3WU2 O;  1GFP A;  3KVD D;  2M07 A;  3VE1 A;  4K3C A;  2JMM A;  4O4U A;  5D5D A;  4BUM X;  5B66 O;  2KZ7 A;  5EE2 A;  5G3A A;  2XE5 A;  3QRC A;  3AAE B;  1MPF A;  1QJP A;  2MHL A;  3POU A;  4FOZ A;  4GCQ A;  3FYX A;  4AYM C;  5IYU A;  2W81 C;  5H2F O;  3G7G A;  2PRN A;  4O49 A; 
#chains in the Genus database with same CATH homology
 2X9K A;  2F1C X;  2WJQ A;  2WVP A;  2IWW A;  4CTD A;  4PR7 A;  2IWV A;  4FQE A;  2WJR A;  2JQY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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