2X9KA

Structure of a e.coli porin
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
278
structure length
278
Chain Sequence
RNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGADFNRVGLFYGYDFQNGLSVSLEYAFEWQDADEGDSDKFHYAGVGVNYSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Escherichia coli
publication title Correlation between the Ompg Secondary Structure and its Ph-Dependent Alterations Monitored by Ftir.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN G
total genus 70
structure length 278
sequence length 278
ec nomenclature
pdb deposition date 2010-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2x9kA00
2IWWA 4PR7A 4CTDA 2F1CX 2IWVA 2WJRA 2WJQA 2JQYA 2X9KA 4FQEA 2WVPA
chains in the Genus database with same CATH superfamily
3WI4A 1YS5A 2KC0A 3LK2B 5JDPA 4FRTA 3WU2O 5H2FO 1HXTA 2AXTO 4O3WA 3TZGA 1ZHWA 4O3ZA 2J1NA 4XNKA 4FMSA 4AKMA 2Y2XA 8PRNA 3LK2A 2XTRA 4C4VB 2XE3A 5GV0A 4FSPA 5KAIO 3JCUO 2GE4A 2K4TA 4KR4A 3VE2A 3T20A 3SY9A 4AYNA 3DA3A 3T24A 4XNLA 1OSMA 1GFQA 1QJ9A 4QQ1A 1ORMA 2XE5A 3PRNA 3FYXA 4RLCA 1ZHYA 4FRXA 4AKRB 2Y0KA 4GCSA 3SY7A 3EMNX 3UAQA 4AYMC 3AA0B 4AYEC 1G90A 2PORA 2YPVA 1GFNA 5G3AA 1GFOA 1Q9GA 3LK41 4FUVA 5EE2A 5DL6A 1MM4A 4N59A 3C5OA 2Y7SA 5T5FA 4KRAA 5PRNA 4LSEA 3HOLA 5B5EO 2F1TA 1BH3A 2LHFA 5E79O 5G38A 3AA1A 3BRYA 4F4BA 2W81C 3UPGA 3PORA 3POUA 3NSGA 1BT9A 1E54A 2XG6A 6PRNA 5IYUA 5AFUK 1Q9FA 3LK42 3SZDA 2ERVA 2WVPA 2PRNA 4N75A 4N58A 5GTIO 4E1TA 3HW9A 3VZTX 2R4PA 2ZLDA 5B66O 3G7GA 4JFBA 4FZMA 3SYBA 4AYID 4GCPA 4D64A 1OPFA 3VY8X 1IZNB 3DWNA 4JCHA 2M07A 4D65A 3DA4A 4O3XB 3AA6B 3T0SA 4CTDA 1PRNA 3BS0A 3O0EA 3POQA 4FSOA 3AA1B 4AFKA 3HOEA 1IZNA 4IL6O 4E1SA 5ADXK 3SYSA 1QJ8A 2ODJA 3A2SX 3DZMA 4UB8O 3WI5A 3AA6A 4PUXA 2F1VA 2R4NA 3PQSA 2MNHA 1GFPA 4K3CA 2FGRA 2XE1A 5G26A 3KZIO 3PGSA 4AUIA 4BUMX 3VY9X 3LK3A 4GCQA 2R4OA 1MPFA 1BXWA 5FVNA 4FOZA 3VZWX 2O4VA 3VZUX 2Y0LA 4LSIA 4B61A 2R89A 2LFUA 2XMXA 4N74A 4C00A 4K3BA 4FQEA 3PGUA 1S5LO 2KDYA 4PR7A 4AYDC 3BRZA 4PJ0O 2FGQX 1QJPA 5AFUL 4LSHA 2YNKA 4LSFA 2ZFGA 2R88A 2KXPA 2N2MA 4RJXA 1PHOA 2Y0HA 1T16A 5KAFO 3A0BO 2KZ7A 4O4XA 4Z3TA 2F1CX 3GP6A 3UU2A 3K19A 2J4UP 3NJTA 4FZLA 3RBHA 2W80C 2OMFA 2X9KA 4RLBA 3V8UA 1P4TA 3POXA 3VE1A 3HWBA 2JMMA 3LK3B 3PGRA 3AAEB 4U9CA 2IWVA 1T1LA 3QRAA 3AAAB 3JTYA 4C69X 7PRNA 2JQYA 1ZHZA 5D5DA 4GHBA 2XE2A 3QRCA 4KR8A 4G76A 5ADXL 4O4UA 3AAEA 4O49A 5DL8A 5G39A 2X27X 3AAAA 2R8AA 4C4VA 4FT6A 4AZLA 5GTHO 4RL9A 3DWOX 4G75A 4O3YA 5DL7A 2IWWA 2KXPB 1ZHTA 2QTKA 2N2LA 3KVDD 4D5UA 3PQUA 4FESA 2R4LA 3AA7B 4FZNA 2KZ7B 2WJQA 5TISO 2M06A 4RJWA 4AKRA 1ZHXA 1H6S1 3AA7A 1MM5A 3A0HO 3AA0A 1HXXA 3SZVA 2WJRA 2MHLA 5DL5A 4UB6O 4GF4A 2K0LA 1HXUA 1GFMA 3PF1A 2XTQA 1THQA
chains in the Genus database with same CATH topology
2IWWA 4PR7A 4CTDA 2F1CX 2IWVA 2WJRA 2WJQA 2JQYA 2X9KA 4FQEA 2WVPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IWW A;  4PR7 A;  4CTD A;  2F1C X;  2IWV A;  2WJR A;  2WJQ A;  2JQY A;  2X9K A;  4FQE A;  2WVP A; 
#chains in the Genus database with same CATH topology
 3WI4 A;  1YS5 A;  2KC0 A;  3LK2 B;  5JDP A;  4FRT A;  3WU2 O;  5H2F O;  1HXT A;  2AXT O;  4O3W A;  3TZG A;  1ZHW A;  4O3Z A;  2J1N A;  4XNK A;  4FMS A;  4AKM A;  2Y2X A;  8PRN A;  3LK2 A;  2XTR A;  4C4V B;  2XE3 A;  5GV0 A;  4FSP A;  5KAI O;  3JCU O;  2GE4 A;  2K4T A;  4KR4 A;  3VE2 A;  3T20 A;  3SY9 A;  4AYN A;  3DA3 A;  3T24 A;  4XNL A;  1OSM A;  1GFQ A;  1QJ9 A;  4QQ1 A;  1ORM A;  2XE5 A;  3PRN A;  3FYX A;  4RLC A;  1ZHY A;  4FRX A;  4AKR B;  2Y0K A;  4GCS A;  3SY7 A;  3EMN X;  3UAQ A;  4AYM C;  3AA0 B;  4AYE C;  1G90 A;  2POR A;  2YPV A;  1GFN A;  5G3A A;  1GFO A;  1Q9G A;  3LK4 1;  4FUV A;  5EE2 A;  5DL6 A;  1MM4 A;  4N59 A;  3C5O A;  2Y7S A;  5T5F A;  4KRA A;  5PRN A;  4LSE A;  3HOL A;  5B5E O;  2F1T A;  1BH3 A;  2LHF A;  5E79 O;  5G38 A;  3AA1 A;  3BRY A;  4F4B A;  2W81 C;  3UPG A;  3POR A;  3POU A;  3NSG A;  1BT9 A;  1E54 A;  2XG6 A;  6PRN A;  5IYU A;  5AFU K;  1Q9F A;  3LK4 2;  3SZD A;  2ERV A;  2WVP A;  2PRN A;  4N75 A;  4N58 A;  5GTI O;  4E1T A;  3HW9 A;  3VZT X;  2R4P A;  2ZLD A;  5B66 O;  3G7G A;  4JFB A;  4FZM A;  3SYB A;  4AYI D;  4GCP A;  4D64 A;  1OPF A;  3VY8 X;  1IZN B;  3DWN A;  4JCH A;  2M07 A;  4D65 A;  3DA4 A;  4O3X B;  3AA6 B;  3T0S A;  4CTD A;  1PRN A;  3BS0 A;  3O0E A;  3POQ A;  4FSO A;  3AA1 B;  4AFK A;  3HOE A;  1IZN A;  4IL6 O;  4E1S A;  5ADX K;  3SYS A;  1QJ8 A;  2ODJ A;  3A2S X;  3DZM A;  4UB8 O;  3WI5 A;  3AA6 A;  4PUX A;  2F1V A;  2R4N A;  3PQS A;  2MNH A;  1GFP A;  4K3C A;  2FGR A;  2XE1 A;  5G26 A;  3KZI O;  3PGS A;  4AUI A;  4BUM X;  3VY9 X;  3LK3 A;  4GCQ A;  2R4O A;  1MPF A;  1BXW A;  5FVN A;  4FOZ A;  3VZW X;  2O4V A;  3VZU X;  2Y0L A;  4LSI A;  4B61 A;  2R89 A;  2LFU A;  2XMX A;  4N74 A;  4C00 A;  4K3B A;  4FQE A;  3PGU A;  1S5L O;  2KDY A;  4PR7 A;  4AYD C;  3BRZ A;  4PJ0 O;  2FGQ X;  1QJP A;  5AFU L;  4LSH A;  2YNK A;  4LSF A;  2ZFG A;  2R88 A;  2KXP A;  2N2M A;  4RJX A;  1PHO A;  2Y0H A;  1T16 A;  5KAF O;  3A0B O;  2KZ7 A;  4O4X A;  4Z3T A;  2F1C X;  3GP6 A;  3UU2 A;  3K19 A;  2J4U P;  3NJT A;  4FZL A;  3RBH A;  2W80 C;  2OMF A;  2X9K A;  4RLB A;  3V8U A;  1P4T A;  3POX A;  3VE1 A;  3HWB A;  2JMM A;  3LK3 B;  3PGR A;  3AAE B;  4U9C A;  2IWV A;  1T1L A;  3QRA A;  3AAA B;  3JTY A;  4C69 X;  7PRN A;  2JQY A;  1ZHZ A;  5D5D A;  4GHB A;  2XE2 A;  3QRC A;  4KR8 A;  4G76 A;  5ADX L;  4O4U A;  3AAE A;  4O49 A;  5DL8 A;  5G39 A;  2X27 X;  3AAA A;  2R8A A;  4C4V A;  4FT6 A;  4AZL A;  5GTH O;  4RL9 A;  3DWO X;  4G75 A;  4O3Y A;  5DL7 A;  2IWW A;  2KXP B;  1ZHT A;  2QTK A;  2N2L A;  3KVD D;  4D5U A;  3PQU A;  4FES A;  2R4L A;  3AA7 B;  4FZN A;  2KZ7 B;  2WJQ A;  5TIS O;  2M06 A;  4RJW A;  4AKR A;  1ZHX A;  1H6S 1;  3AA7 A;  1MM5 A;  3A0H O;  3AA0 A;  1HXX A;  3SZV A;  2WJR A;  2MHL A;  5DL5 A;  4UB6 O;  4GF4 A;  2K0L A;  1HXU A;  1GFM A;  3PF1 A;  2XTQ A;  1THQ A; 
#chains in the Genus database with same CATH homology
 2IWW A;  4PR7 A;  4CTD A;  2F1C X;  2IWV A;  2WJR A;  2WJQ A;  2JQY A;  2X9K A;  4FQE A;  2WVP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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