1OPFA

The structure of ompf porin in a tetragonal crystal form
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Escherichia coli
publication title The structure of OmpF porin in a tetragonal crystal form.
pubmed doi rcsb
molecule keywords MATRIX PORIN OUTER MEMBRANE PROTEIN F
total genus 96
structure length 340
sequence length 340
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 1994-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1opfA00
3NSGA 1MPFA 1E54A 2QTKA 4LSHA 2OMFA 3SY9A 2FGQX 2PORA 5DL8A 2Y0HA 4FRTA 1PHOA 3POUA 4AUIA 1BT9A 2Y2XA 4KR8A 2Y0KA 4FT6A 2K4TA 4FOZA 3A2SX 3SYBA 3JTYA 1HXTA 3PORA 5FVNA 2Y0LA 4GCQA 2ODJA 2XE1A 3VZWX 2J4UP 2ZFGA 1HXUA 1GFMA 7PRNA 3SZVA 4D64A 3UPGA 3HWBA 4FMSA 4LSIA 5JDPA 3K19A 1GFPA 2FGRA 5DL7A 1HXXA 3SY7A 4RJWA 1GFQA 3VZUX 3T24A 1BH3A 5DL5A 2XE2A 2XE5A 3VY9X 5DL6A 4FRXA 4D5UA 3SZDA 2ZLDA 4KR4A 4GCPA 3SYSA 3UU2A 2PRNA 3EMNX 4FSOA 4BUMX 4KRAA 3VY8X 3WI4A 1OSMA 4LSEA 5PRNA 4LSFA 4GCSA 3POQA 4JFBA 3POXA 2J1NA 2O4VA 8PRNA 3HW9A 3O0EA 3VZTX 1GFOA 1PRNA 2XG6A 3T0SA 1GFNA 4RJXA 3WI5A 4C69X 2XE3A 3FYXA 4D65A 4FSPA 3T20A 1H6S1 3PRNA 1OPFA 6PRNA
chains in the Genus database with same CATH superfamily
1G90A 1Q9FA 2KDYA 4RLBA 4O3WA 3NSGA 3RBHA 2X27X 3VE2A 2M07A 3PQUA 4U9CA 1MPFA 1E54A 2QTKA 4LSHA 4GF4A 2KZ7A 3HOEA 4O49A 1ZHZA 2OMFA 1P4TA 1ZHXA 2N2LA 4UB6O 5KAIO 2YPVA 4O3YA 3LK3A 1ZHWA 3A0BO 3SY9A 4AYEC 2FGQX 2PORA 5DL8A 2Y0HA 4FRTA 1PHOA 4C00A 2R89A 4O3XB 4AFKA 3POUA 2ERVA 3LK3B 1ORMA 1BT9A 4AUIA 2Y2XA 2WJQA 4PJ0O 3BRYA 2Y0KA 4FT6A 2K4TA 4KR8A 3AA6A 2W81C 2F1CX 5H2FO 4FESA 2MHLA 4FOZA 3DZMA 3LK2B 4RL9A 4FZLA 4K3CA 3A2SX 3SYBA 3JTYA 1HXTA 2KC0A 2Y7SA 4AYNA 4FQEA 3PORA 4K3BA 3NJTA 2LFUA 2XMXA 3AA6B 5FVNA 2GE4A 2Y0LA 4GCQA 2R4PA 4FUVA 2ODJA 2XE1A 3VZWX 4IL6O 2IWWA 3LK41 5T5FA 2J4UP 4UB8O 2R4LA 2R4NA 2ZFGA 4JCHA 3BRZA 1HXUA 4RLCA 3LK42 1GFMA 7PRNA 3SZVA 4D64A 3UPGA 3HWBA 4FMSA 4AYID 3LK2A 4LSIA 5JDPA 3K19A 3KVDD 4AKMA 1ZHTA 3KZIO 4PR7A 2XTRA 4F4BA 1T16A 4Z3TA 3DA4A 1GFPA 2FGRA 5DL7A 1HXXA 5G26A 3SY7A 4E1TA 1QJ9A 4RJWA 1GFQA 5E79O 2KXPB 4XNLA 3T24A 3V8UA 3VZUX 1QJ8A 5G38A 5KAFO 4AYDC 4B61A 1BH3A 5TISO 1THQA 2AXTO 5DL5A 1YS5A 2MNHA 2XE2A 4N58A 5EE2A 3BS0A 2W80C 2XE5A 2F1VA 3VY9X 5GTHO 5DL6A 5ADXK 5D5DA 4C4VA 3AAAB 4FZNA 4XNKA 2R4OA 5IYUA 2WJRA 4FRXA 4D5UA 3AA1A 3C5OA 3QRCA 4GHBA 5B66O 3SZDA 2ZLDA 4KR4A 3G7GA 4GCPA 3SYSA 4G75A 2YNKA 3A0HO 3UU2A 2PRNA 3EMNX 3HOLA 4C4VB 4FSOA 1IZNA 2N2MA 3PQSA 1QJPA 4BUMX 4E1SA 3AA1B 4KRAA 3VY8X 3WI4A 2IWVA 3AAEA 1OSMA 2KXPA 4LSEA 5PRNA 5AFUK 5ADXL 3AA0A 4LSFA 3PGUA 5GTIO 1IZNB 2JQYA 3AA7A 4GCSA 4PUXA 4O4UA 3JCUO 2K0LA 3AAEB 4AZLA 4CTDA 3AAAA 3TZGA 1ZHYA 3AA0B 4AKRA 3AA7B 2X9KA 3POQA 3QRAA 4JFBA 3DWOX 3POXA 2M06A 4N74A 4N75A 2J1NA 2O4VA 8PRNA 3HW9A 3PGRA 1MM5A 2LHFA 5AFUL 2KZ7B 2R88A 3O0EA 3VZTX 4AYMC 1GFOA 1PRNA 4O3ZA 4AKRB 2XG6A 1T1LA 3DWNA 4N59A 1GFNA 2WVPA 4RJXA 1Q9GA 4QQ1A 3T0SA 5GV0A 3WI5A 4O4XA 3PGSA 3DA3A 3VE1A 2XE3A 4FZMA 1MM4A 3FYXA 4C69X 5G39A 4D65A 4FSPA 2F1TA 3T20A 1H6S1 3PRNA 1OPFA 2R8AA 5B5EO 5G3AA 2XTQA 3PF1A 2JMMA 3WU2O 3GP6A 1S5LO 4G76A 6PRNA 3UAQA 1BXWA
chains in the Genus database with same CATH topology
1G90A 1Q9FA 2KDYA 4RLBA 4O3WA 3NSGA 3RBHA 2X27X 3VE2A 2M07A 3PQUA 4U9CA 1MPFA 1E54A 2QTKA 4LSHA 4GF4A 2KZ7A 3HOEA 4O49A 1ZHZA 2OMFA 1P4TA 1ZHXA 2N2LA 2YPVA 4O3YA 3LK3A 1ZHWA 3SY9A 4AYEC 2FGQX 2PORA 5DL8A 2Y0HA 4FRTA 1PHOA 4O3XB 4AFKA 3POUA 2ERVA 3LK3B 1ORMA 1BT9A 4AUIA 2Y2XA 4KR8A 2Y0KA 4FT6A 2K4TA 3AA6A 2W81C 4FESA 2MHLA 4FOZA 4RL9A 3LK2B 4FZLA 3A2SX 3SYBA 3JTYA 1HXTA 2KC0A 2Y7SA 4AYNA 3PORA 2LFUA 2XMXA 3AA6B 5FVNA 2GE4A 2Y0LA 4GCQA 4FUVA 2ODJA 2XE1A 3VZWX 3LK41 5T5FA 2J4UP 2ZFGA 4JCHA 1HXUA 4RLCA 3LK42 1GFMA 7PRNA 3SZVA 4D64A 3UPGA 3HWBA 4FMSA 4AYID 3LK2A 4LSIA 5JDPA 3K19A 3KVDD 4AKMA 1ZHTA 2XTRA 4F4BA 4Z3TA 3DA4A 1GFPA 2FGRA 5DL7A 1HXXA 5G26A 3SY7A 4E1TA 1QJ9A 4RJWA 1GFQA 2KXPB 4XNLA 3T24A 3V8UA 3VZUX 1QJ8A 4AYDC 4B61A 1BH3A 1THQA 5DL5A 1YS5A 2MNHA 2XE2A 4N58A 5EE2A 2W80C 2XE5A 2F1VA 3VY9X 5DL6A 5ADXK 5D5DA 3AAAB 4FZNA 4XNKA 4FRXA 4D5UA 3AA1A 3C5OA 3QRCA 4GHBA 3SZDA 2ZLDA 4KR4A 3G7GA 4GCPA 3SYSA 4G75A 2YNKA 3UU2A 2PRNA 3EMNX 3HOLA 4FSOA 1IZNA 2N2MA 3PQSA 1QJPA 4BUMX 4E1SA 3AA1B 4KRAA 3VY8X 3WI4A 3AAEA 1OSMA 2KXPA 4LSEA 5PRNA 5AFUK 5ADXL 3AA0A 4LSFA 1IZNB 3AA7A 4GCSA 4PUXA 4O4UA 2K0LA 3AAEB 4AZLA 3AAAA 3TZGA 1ZHYA 3AA0B 4AKRA 3AA7B 3POQA 3QRAA 4JFBA 3POXA 2M06A 2J1NA 2O4VA 8PRNA 3HW9A 1MM5A 2LHFA 5AFUL 2KZ7B 3O0EA 3VZTX 4AYMC 1GFOA 1PRNA 4O3ZA 4AKRB 2XG6A 4N59A 3T0SA 1GFNA 5IYUA 4RJXA 1Q9GA 4QQ1A 5GV0A 3WI5A 4O4XA 4C69X 3DA3A 3VE1A 2XE3A 4FZMA 1MM4A 3FYXA 4D65A 4FSPA 2F1TA 3T20A 1H6S1 3PRNA 1OPFA 2XTQA 2JMMA 3GP6A 4G76A 6PRNA 3UAQA 1BXWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NSG A;  1MPF A;  1E54 A;  2QTK A;  4LSH A;  2OMF A;  3SY9 A;  2FGQ X;  2POR A;  5DL8 A;  2Y0H A;  4FRT A;  1PHO A;  3POU A;  4AUI A;  1BT9 A;  2Y2X A;  4KR8 A;  2Y0K A;  4FT6 A;  2K4T A;  4FOZ A;  3A2S X;  3SYB A;  3JTY A;  1HXT A;  3POR A;  5FVN A;  2Y0L A;  4GCQ A;  2ODJ A;  2XE1 A;  3VZW X;  2J4U P;  2ZFG A;  1HXU A;  1GFM A;  7PRN A;  3SZV A;  4D64 A;  3UPG A;  3HWB A;  4FMS A;  4LSI A;  5JDP A;  3K19 A;  1GFP A;  2FGR A;  5DL7 A;  1HXX A;  3SY7 A;  4RJW A;  1GFQ A;  3VZU X;  3T24 A;  1BH3 A;  5DL5 A;  2XE2 A;  2XE5 A;  3VY9 X;  5DL6 A;  4FRX A;  4D5U A;  3SZD A;  2ZLD A;  4KR4 A;  4GCP A;  3SYS A;  3UU2 A;  2PRN A;  3EMN X;  4FSO A;  4BUM X;  4KRA A;  3VY8 X;  3WI4 A;  1OSM A;  4LSE A;  5PRN A;  4LSF A;  4GCS A;  3POQ A;  4JFB A;  3POX A;  2J1N A;  2O4V A;  8PRN A;  3HW9 A;  3O0E A;  3VZT X;  1GFO A;  1PRN A;  2XG6 A;  3T0S A;  1GFN A;  4RJX A;  3WI5 A;  4C69 X;  2XE3 A;  3FYX A;  4D65 A;  4FSP A;  3T20 A;  1H6S 1;  3PRN A;  1OPF A;  6PRN A; 
#chains in the Genus database with same CATH topology
 1G90 A;  1Q9F A;  2KDY A;  4RLB A;  4O3W A;  3NSG A;  3RBH A;  2X27 X;  3VE2 A;  2M07 A;  3PQU A;  4U9C A;  1MPF A;  1E54 A;  2QTK A;  4LSH A;  4GF4 A;  2KZ7 A;  3HOE A;  4O49 A;  1ZHZ A;  2OMF A;  1P4T A;  1ZHX A;  2N2L A;  4UB6 O;  5KAI O;  2YPV A;  4O3Y A;  3LK3 A;  1ZHW A;  3A0B O;  3SY9 A;  4AYE C;  2FGQ X;  2POR A;  5DL8 A;  2Y0H A;  4FRT A;  1PHO A;  4C00 A;  2R89 A;  4O3X B;  4AFK A;  3POU A;  2ERV A;  3LK3 B;  1ORM A;  1BT9 A;  4AUI A;  2Y2X A;  2WJQ A;  4PJ0 O;  3BRY A;  2Y0K A;  4FT6 A;  2K4T A;  4KR8 A;  3AA6 A;  2W81 C;  2F1C X;  5H2F O;  4FES A;  2MHL A;  4FOZ A;  3DZM A;  3LK2 B;  4RL9 A;  4FZL A;  4K3C A;  3A2S X;  3SYB A;  3JTY A;  1HXT A;  2KC0 A;  2Y7S A;  4AYN A;  4FQE A;  3POR A;  4K3B A;  3NJT A;  2LFU A;  2XMX A;  3AA6 B;  5FVN A;  2GE4 A;  2Y0L A;  4GCQ A;  2R4P A;  4FUV A;  2ODJ A;  2XE1 A;  3VZW X;  4IL6 O;  2IWW A;  3LK4 1;  5T5F A;  2J4U P;  4UB8 O;  2R4L A;  2R4N A;  2ZFG A;  4JCH A;  3BRZ A;  1HXU A;  4RLC A;  3LK4 2;  1GFM A;  7PRN A;  3SZV A;  4D64 A;  3UPG A;  3HWB A;  4FMS A;  4AYI D;  3LK2 A;  4LSI A;  5JDP A;  3K19 A;  3KVD D;  4AKM A;  1ZHT A;  3KZI O;  4PR7 A;  2XTR A;  4F4B A;  1T16 A;  4Z3T A;  3DA4 A;  1GFP A;  2FGR A;  5DL7 A;  1HXX A;  5G26 A;  3SY7 A;  4E1T A;  1QJ9 A;  4RJW A;  1GFQ A;  5E79 O;  2KXP B;  4XNL A;  3T24 A;  3V8U A;  3VZU X;  1QJ8 A;  5G38 A;  5KAF O;  4AYD C;  4B61 A;  1BH3 A;  5TIS O;  1THQ A;  2AXT O;  5DL5 A;  1YS5 A;  2MNH A;  2XE2 A;  4N58 A;  5EE2 A;  3BS0 A;  2W80 C;  2XE5 A;  2F1V A;  3VY9 X;  5GTH O;  5DL6 A;  5ADX K;  5D5D A;  4C4V A;  3AAA B;  4FZN A;  4XNK A;  2R4O A;  5IYU A;  2WJR A;  4FRX A;  4D5U A;  3AA1 A;  3C5O A;  3QRC A;  4GHB A;  5B66 O;  3SZD A;  2ZLD A;  4KR4 A;  3G7G A;  4GCP A;  3SYS A;  4G75 A;  2YNK A;  3A0H O;  3UU2 A;  2PRN A;  3EMN X;  3HOL A;  4C4V B;  4FSO A;  1IZN A;  2N2M A;  3PQS A;  1QJP A;  4BUM X;  4E1S A;  3AA1 B;  4KRA A;  3VY8 X;  3WI4 A;  2IWV A;  3AAE A;  1OSM A;  2KXP A;  4LSE A;  5PRN A;  5AFU K;  5ADX L;  3AA0 A;  4LSF A;  3PGU A;  5GTI O;  1IZN B;  2JQY A;  3AA7 A;  4GCS A;  4PUX A;  4O4U A;  3JCU O;  2K0L A;  3AAE B;  4AZL A;  4CTD A;  3AAA A;  3TZG A;  1ZHY A;  3AA0 B;  4AKR A;  3AA7 B;  2X9K A;  3POQ A;  3QRA A;  4JFB A;  3DWO X;  3POX A;  2M06 A;  4N74 A;  4N75 A;  2J1N A;  2O4V A;  8PRN A;  3HW9 A;  3PGR A;  1MM5 A;  2LHF A;  5AFU L;  2KZ7 B;  2R88 A;  3O0E A;  3VZT X;  4AYM C;  1GFO A;  1PRN A;  4O3Z A;  4AKR B;  2XG6 A;  1T1L A;  3DWN A;  4N59 A;  1GFN A;  2WVP A;  4RJX A;  1Q9G A;  4QQ1 A;  3T0S A;  5GV0 A;  3WI5 A;  4O4X A;  3PGS A;  3DA3 A;  3VE1 A;  2XE3 A;  4FZM A;  1MM4 A;  3FYX A;  4C69 X;  5G39 A;  4D65 A;  4FSP A;  2F1T A;  3T20 A;  1H6S 1;  3PRN A;  1OPF A;  2R8A A;  5B5E O;  5G3A A;  2XTQ A;  3PF1 A;  2JMM A;  3WU2 O;  3GP6 A;  1S5L O;  4G76 A;  6PRN A;  3UAQ A;  1BXW A; 
#chains in the Genus database with same CATH homology
 1G90 A;  1Q9F A;  2KDY A;  4RLB A;  4O3W A;  3NSG A;  3RBH A;  2X27 X;  3VE2 A;  2M07 A;  3PQU A;  4U9C A;  1MPF A;  1E54 A;  2QTK A;  4LSH A;  4GF4 A;  2KZ7 A;  3HOE A;  4O49 A;  1ZHZ A;  2OMF A;  1P4T A;  1ZHX A;  2N2L A;  2YPV A;  4O3Y A;  3LK3 A;  1ZHW A;  3SY9 A;  4AYE C;  2FGQ X;  2POR A;  5DL8 A;  2Y0H A;  4FRT A;  1PHO A;  4O3X B;  4AFK A;  3POU A;  2ERV A;  3LK3 B;  1ORM A;  1BT9 A;  4AUI A;  2Y2X A;  4KR8 A;  2Y0K A;  4FT6 A;  2K4T A;  3AA6 A;  2W81 C;  4FES A;  2MHL A;  4FOZ A;  4RL9 A;  3LK2 B;  4FZL A;  3A2S X;  3SYB A;  3JTY A;  1HXT A;  2KC0 A;  2Y7S A;  4AYN A;  3POR A;  2LFU A;  2XMX A;  3AA6 B;  5FVN A;  2GE4 A;  2Y0L A;  4GCQ A;  4FUV A;  2ODJ A;  2XE1 A;  3VZW X;  3LK4 1;  5T5F A;  2J4U P;  2ZFG A;  4JCH A;  1HXU A;  4RLC A;  3LK4 2;  1GFM A;  7PRN A;  3SZV A;  4D64 A;  3UPG A;  3HWB A;  4FMS A;  4AYI D;  3LK2 A;  4LSI A;  5JDP A;  3K19 A;  3KVD D;  4AKM A;  1ZHT A;  2XTR A;  4F4B A;  4Z3T A;  3DA4 A;  1GFP A;  2FGR A;  5DL7 A;  1HXX A;  5G26 A;  3SY7 A;  4E1T A;  1QJ9 A;  4RJW A;  1GFQ A;  2KXP B;  4XNL A;  3T24 A;  3V8U A;  3VZU X;  1QJ8 A;  4AYD C;  4B61 A;  1BH3 A;  1THQ A;  5DL5 A;  1YS5 A;  2MNH A;  2XE2 A;  4N58 A;  5EE2 A;  2W80 C;  2XE5 A;  2F1V A;  3VY9 X;  5DL6 A;  5ADX K;  5D5D A;  3AAA B;  4FZN A;  4XNK A;  4FRX A;  4D5U A;  3AA1 A;  3C5O A;  3QRC A;  4GHB A;  3SZD A;  2ZLD A;  4KR4 A;  3G7G A;  4GCP A;  3SYS A;  4G75 A;  2YNK A;  3UU2 A;  2PRN A;  3EMN X;  3HOL A;  4FSO A;  1IZN A;  2N2M A;  3PQS A;  1QJP A;  4BUM X;  4E1S A;  3AA1 B;  4KRA A;  3VY8 X;  3WI4 A;  3AAE A;  1OSM A;  2KXP A;  4LSE A;  5PRN A;  5AFU K;  5ADX L;  3AA0 A;  4LSF A;  1IZN B;  3AA7 A;  4GCS A;  4PUX A;  4O4U A;  2K0L A;  3AAE B;  4AZL A;  3AAA A;  3TZG A;  1ZHY A;  3AA0 B;  4AKR A;  3AA7 B;  3POQ A;  3QRA A;  4JFB A;  3POX A;  2M06 A;  2J1N A;  2O4V A;  8PRN A;  3HW9 A;  1MM5 A;  2LHF A;  5AFU L;  2KZ7 B;  3O0E A;  3VZT X;  4AYM C;  1GFO A;  1PRN A;  4O3Z A;  4AKR B;  2XG6 A;  4N59 A;  3T0S A;  1GFN A;  5IYU A;  4RJX A;  1Q9G A;  4QQ1 A;  5GV0 A;  3WI5 A;  4O4X A;  4C69 X;  3DA3 A;  3VE1 A;  2XE3 A;  4FZM A;  1MM4 A;  3FYX A;  4D65 A;  4FSP A;  2F1T A;  3T20 A;  1H6S 1;  3PRN A;  1OPF A;  2XTQ A;  2JMM A;  3GP6 A;  4G76 A;  6PRN A;  3UAQ A;  1BXW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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