3SY9A

Crystal structure of pseudomonas aeruginosa occd2 (opdc)
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
416
structure length
371
Chain Sequence
EGFIEGSSLQLLTRNYYFNHDRRSKEWAQGFIATFQSGYTPGVVGFGVDAYGMLGLKLYESGKAPDEFSSGGAALKIRAFDTELKLGDQFLSNPVVAGGESRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNDSHHLSWLGGTWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLGRIDNNTYSLHFAVGYRQHTVTAVLQKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNEKSWKLQYDYDFVALGVPGLSASASYSRGKLDLTRVDPDSPGYGGWYSADGKNAKHWERDLDLQYVVQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDEYRVIVDYPIDVF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Histidine porin OpdC
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 101
structure length 371
sequence length 416
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3sy9A01
2Y2XA 2QTKA 1H6S1 3POUA 1GFQA 3HW9A 3HWBA 6PRNA 8PRNA 3PRNA 3T0SA 4GCSA 1GFOA 2J4UP 2K4TA 1GFNA 4RJWA 1PRNA 3POXA 4GCQA 3WI5A 3VZUX 1OPFA 1OSMA 3WI4A 2Y0LA 1BH3A 4KR8A 3PORA 3VZWX 3VY8X 2O4VA 3O0EA 5JDPA 2XE2A 2Y0KA 3T24A 4KRAA 1HXXA 4BUMX 4AUIA 2OMFA 2XE1A 5DL8A 4D5UA 4FRTA 4LSIA 4FSPA 2XE3A 1HXUA 7PRNA 5FVNA 5DL7A 4FRXA 4FSOA 1BT9A 2FGQX 2FGRA 3SY7A 3T20A 1GFMA 2PORA 2XE5A 4LSHA 5DL5A 4FT6A 3SZDA 3SYBA 2XG6A 1GFPA 2PRNA 4FOZA 3VZTX 3SYSA 4JFBA 4D64A 3FYXA 1MPFA 3K19A 2Y0HA 5PRNA 2ZFGA 2ODJA 4C69X 4KR4A 3A2SX 2ZLDA 3JTYA 3POQA 1PHOA 4D65A 4FMSA 3UU2A 4RJXA 3NSGA 5DL6A 1HXTA 4LSFA 2J1NA 3VY9X 1E54A 4GCPA 3SY9A 3UPGA 3SZVA 3EMNX 4LSEA
chains in the Genus database with same CATH superfamily
2Y2XA 5GV0A 2WVPA 2QTKA 1H6S1 3AA7B 4AYEC 4PR7A 3DWOX 3POUA 5D5DA 5H2FO 1GFQA 2AXTO 2IWVA 5ADXK 4GF4A 3AA1B 2R88A 3HW9A 3HWBA 2YPVA 4F4BA 4G76A 4N59A 3AAAB 4O49A 3PRNA 4K3BA 6PRNA 3LK2A 8PRNA 3T0SA 3DWNA 3PF1A 3PGSA 4GCSA 2K0LA 2LFUA 2KZ7A 2N2LA 1GFOA 4FUVA 2J4UP 4O3YA 2K4TA 1GFNA 1Q9FA 2LHFA 3PQSA 1QJPA 4FZLA 3RBHA 4RJWA 3AA7A 1PRNA 4K3CA 3TZGA 3POXA 4FESA 4GCQA 4IL6O 3WI5A 3QRCA 4AYMC 2M06A 3VZUX 1OPFA 3LK2B 1OSMA 3WI4A 3AA1A 2KZ7B 1BH3A 2Y0LA 4KR8A 3PORA 3AA0B 4E1SA 3AAAA 4GHBA 2F1TA 3VZWX 3BRZA 5GTIO 2KDYA 2KXPA 3VY8X 2O4VA 3O0EA 5JDPA 4O3WA 2X27X 2XTRA 2MHLA 1ORMA 4XNLA 5G38A 2XE2A 2Y0KA 3T24A 4AZLA 1S5LO 4KRAA 2R4LA 2ERVA 1Q9GA 1HXXA 5KAIO 4FZNA 2KXPB 5GTHO 3LK41 4BUMX 4AUIA 4Z3TA 2N2MA 2OMFA 3AA0A 3NJTA 4N75A 4O3XB 4AFKA 5TISO 3VE2A 2XE1A 3G7GA 1THQA 5G26A 2W80C 1P4TA 5DL8A 3KZIO 4RLCA 3A0BO 4QQ1A 4AYNA 4D5UA 4FRTA 1MM4A 3PGRA 4LSIA 4FSPA 3PGUA 4JCHA 2XE3A 5T5FA 5B5EO 3DA3A 1HXUA 3QRAA 4UB8O 1ZHWA 7PRNA 1G90A 1ZHTA 2YNKA 1T16A 4FZMA 5FVNA 5DL7A 4FRXA 4FQEA 4RLBA 4FSOA 3UAQA 4CTDA 1BT9A 2F1CX 1BXWA 2FGQX 2FGRA 2WJQA 3SY7A 5G3AA 4C4VB 2GE4A 3T20A 1GFMA 1ZHYA 1ZHZA 2PORA 2XE5A 3HOLA 3KVDD 4G75A 4LSHA 5DL5A 4AYDC 4FT6A 3SZDA 3SYBA 3GP6A 2JMMA 2XG6A 3V8UA 1GFPA 2PRNA 4FOZA 5EE2A 3VZTX 3LK3A 3DZMA 2JQYA 3SYSA 3VE1A 1IZNB 4JFBA 4D64A 2R4PA 4RL9A 3FYXA 1MPFA 3K19A 4O4UA 1YS5A 2X9KA 4C4VA 4O3ZA 2Y0HA 4C00A 5PRNA 4PUXA 3AA6A 4AKMA 2ZFGA 3HOEA 2ODJA 4AKRB 1QJ8A 4C69X 3LK3B 4KR4A 3A2SX 3A0HO 2ZLDA 1QJ9A 5KAFO 4N58A 2R8AA 3WU2O 3JTYA 3PQUA 3POQA 4AYID 5E79O 1PHOA 4PJ0O 4D65A 4E1TA 5AFUL 3AAEA 2IWWA 2XTQA 4FMSA 1IZNA 3UU2A 3AA6B 3C5OA 4UB6O 4RJXA 3BRYA 3NSGA 5DL6A 1HXTA 2W81C 2F1VA 3BS0A 3LK42 4B61A 4LSFA 4U9CA 1T1LA 5G39A 2R4OA 5IYUA 2J1NA 4AKRA 4XNKA 2XMXA 5B66O 2KC0A 2Y7SA 3VY9X 1E54A 2R89A 3AAEB 4GCPA 3SY9A 5AFUK 4O4XA 5ADXL 2R4NA 3UPGA 3DA4A 3JCUO 4N74A 2MNHA 2M07A 1MM5A 3SZVA 3EMNX 2WJRA 1ZHXA 4LSEA
chains in the Genus database with same CATH topology
2Y2XA 5GV0A 2QTKA 1H6S1 3AA7B 4AYEC 5D5DA 3POUA 1GFQA 5ADXK 4GF4A 3AA1B 3HW9A 3HWBA 2YPVA 4F4BA 4G76A 4N59A 3AAAB 4O49A 3PRNA 6PRNA 8PRNA 3LK2A 3T0SA 4GCSA 2K0LA 2LFUA 2KZ7A 2N2LA 1GFOA 4FUVA 2J4UP 4O3YA 2K4TA 1GFNA 1Q9FA 2LHFA 3PQSA 1QJPA 4FZLA 3RBHA 4RJWA 3AA7A 1PRNA 3TZGA 3POXA 4FESA 4GCQA 3WI5A 4AYMC 3QRCA 2M06A 3VZUX 1OPFA 3LK2B 1OSMA 3WI4A 3AA1A 2KZ7B 1BH3A 2Y0LA 4KR8A 3PORA 3AA0B 4E1SA 3AAAA 4GHBA 2F1TA 3VZWX 2KDYA 2KXPA 3VY8X 2O4VA 3O0EA 5JDPA 4O3WA 2X27X 2XTRA 2MHLA 1ORMA 4XNLA 2XE2A 2Y0KA 3T24A 4AZLA 4KRAA 2ERVA 1Q9GA 1HXXA 4FZNA 2KXPB 3LK41 4BUMX 4AUIA 4Z3TA 2N2MA 2OMFA 3AA0A 4O3XB 4AFKA 3VE2A 2XE1A 3G7GA 1THQA 5G26A 2W80C 1P4TA 5DL8A 4RLCA 4QQ1A 4AYNA 4D5UA 4FRTA 1MM4A 4LSIA 4FSPA 4JCHA 5T5FA 2XE3A 3DA3A 1HXUA 3QRAA 1ZHWA 7PRNA 1G90A 1ZHTA 2YNKA 4FZMA 5FVNA 3UAQA 5DL7A 4FRXA 4RLBA 4FSOA 1BT9A 1BXWA 2FGQX 2FGRA 3SY7A 2GE4A 3T20A 1GFMA 1ZHYA 1ZHZA 2PORA 2XE5A 3HOLA 3KVDD 4G75A 4LSHA 5DL5A 4AYDC 4FT6A 3SZDA 3SYBA 3GP6A 2JMMA 2XG6A 3V8UA 1GFPA 2PRNA 4FOZA 5EE2A 3VZTX 3LK3A 3VE1A 3SYSA 1IZNB 4JFBA 4D64A 4RL9A 3FYXA 1MPFA 3K19A 4O4UA 1YS5A 4O3ZA 2Y0HA 5PRNA 4PUXA 3AA6A 4AKMA 2ZFGA 3HOEA 2ODJA 4AKRB 1QJ8A 4C69X 3LK3B 4KR4A 3A2SX 2ZLDA 1QJ9A 4N58A 3JTYA 3PQUA 3POQA 4AYID 1PHOA 5AFUL 4D65A 4E1TA 3AAEA 2XTQA 4FMSA 1IZNA 3UU2A 3AA6B 3C5OA 4RJXA 3NSGA 5DL6A 1HXTA 2W81C 2F1VA 3LK42 4B61A 4LSFA 4U9CA 5IYUA 2J1NA 4AKRA 4XNKA 2XMXA 2KC0A 2Y7SA 3VY9X 1E54A 3AAEB 4GCPA 3SY9A 5AFUK 5ADXL 4O4XA 3UPGA 3DA4A 3SZVA 2MNHA 2M07A 1MM5A 3EMNX 1ZHXA 4LSEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y2X A;  2QTK A;  1H6S 1;  3POU A;  1GFQ A;  3HW9 A;  3HWB A;  6PRN A;  8PRN A;  3PRN A;  3T0S A;  4GCS A;  1GFO A;  2J4U P;  2K4T A;  1GFN A;  4RJW A;  1PRN A;  3POX A;  4GCQ A;  3WI5 A;  3VZU X;  1OPF A;  1OSM A;  3WI4 A;  2Y0L A;  1BH3 A;  4KR8 A;  3POR A;  3VZW X;  3VY8 X;  2O4V A;  3O0E A;  5JDP A;  2XE2 A;  2Y0K A;  3T24 A;  4KRA A;  1HXX A;  4BUM X;  4AUI A;  2OMF A;  2XE1 A;  5DL8 A;  4D5U A;  4FRT A;  4LSI A;  4FSP A;  2XE3 A;  1HXU A;  7PRN A;  5FVN A;  5DL7 A;  4FRX A;  4FSO A;  1BT9 A;  2FGQ X;  2FGR A;  3SY7 A;  3T20 A;  1GFM A;  2POR A;  2XE5 A;  4LSH A;  5DL5 A;  4FT6 A;  3SZD A;  3SYB A;  2XG6 A;  1GFP A;  2PRN A;  4FOZ A;  3VZT X;  3SYS A;  4JFB A;  4D64 A;  3FYX A;  1MPF A;  3K19 A;  2Y0H A;  5PRN A;  2ZFG A;  2ODJ A;  4C69 X;  4KR4 A;  3A2S X;  2ZLD A;  3JTY A;  3POQ A;  1PHO A;  4D65 A;  4FMS A;  3UU2 A;  4RJX A;  3NSG A;  5DL6 A;  1HXT A;  4LSF A;  2J1N A;  3VY9 X;  1E54 A;  4GCP A;  3SY9 A;  3UPG A;  3SZV A;  3EMN X;  4LSE A; 
#chains in the Genus database with same CATH topology
 2Y2X A;  5GV0 A;  2WVP A;  2QTK A;  1H6S 1;  3AA7 B;  4AYE C;  4PR7 A;  3DWO X;  3POU A;  5D5D A;  5H2F O;  1GFQ A;  2AXT O;  2IWV A;  5ADX K;  4GF4 A;  3AA1 B;  2R88 A;  3HW9 A;  3HWB A;  2YPV A;  4F4B A;  4G76 A;  4N59 A;  3AAA B;  4O49 A;  3PRN A;  4K3B A;  6PRN A;  3LK2 A;  8PRN A;  3T0S A;  3DWN A;  3PF1 A;  3PGS A;  4GCS A;  2K0L A;  2LFU A;  2KZ7 A;  2N2L A;  1GFO A;  4FUV A;  2J4U P;  4O3Y A;  2K4T A;  1GFN A;  1Q9F A;  2LHF A;  3PQS A;  1QJP A;  4FZL A;  3RBH A;  4RJW A;  3AA7 A;  1PRN A;  4K3C A;  3TZG A;  3POX A;  4FES A;  4GCQ A;  4IL6 O;  3WI5 A;  3QRC A;  4AYM C;  2M06 A;  3VZU X;  1OPF A;  3LK2 B;  1OSM A;  3WI4 A;  3AA1 A;  2KZ7 B;  1BH3 A;  2Y0L A;  4KR8 A;  3POR A;  3AA0 B;  4E1S A;  3AAA A;  4GHB A;  2F1T A;  3VZW X;  3BRZ A;  5GTI O;  2KDY A;  2KXP A;  3VY8 X;  2O4V A;  3O0E A;  5JDP A;  4O3W A;  2X27 X;  2XTR A;  2MHL A;  1ORM A;  4XNL A;  5G38 A;  2XE2 A;  2Y0K A;  3T24 A;  4AZL A;  1S5L O;  4KRA A;  2R4L A;  2ERV A;  1Q9G A;  1HXX A;  5KAI O;  4FZN A;  2KXP B;  5GTH O;  3LK4 1;  4BUM X;  4AUI A;  4Z3T A;  2N2M A;  2OMF A;  3AA0 A;  3NJT A;  4N75 A;  4O3X B;  4AFK A;  5TIS O;  3VE2 A;  2XE1 A;  3G7G A;  1THQ A;  5G26 A;  2W80 C;  1P4T A;  5DL8 A;  3KZI O;  4RLC A;  3A0B O;  4QQ1 A;  4AYN A;  4D5U A;  4FRT A;  1MM4 A;  3PGR A;  4LSI A;  4FSP A;  3PGU A;  4JCH A;  2XE3 A;  5T5F A;  5B5E O;  3DA3 A;  1HXU A;  3QRA A;  4UB8 O;  1ZHW A;  7PRN A;  1G90 A;  1ZHT A;  2YNK A;  1T16 A;  4FZM A;  5FVN A;  5DL7 A;  4FRX A;  4FQE A;  4RLB A;  4FSO A;  3UAQ A;  4CTD A;  1BT9 A;  2F1C X;  1BXW A;  2FGQ X;  2FGR A;  2WJQ A;  3SY7 A;  5G3A A;  4C4V B;  2GE4 A;  3T20 A;  1GFM A;  1ZHY A;  1ZHZ A;  2POR A;  2XE5 A;  3HOL A;  3KVD D;  4G75 A;  4LSH A;  5DL5 A;  4AYD C;  4FT6 A;  3SZD A;  3SYB A;  3GP6 A;  2JMM A;  2XG6 A;  3V8U A;  1GFP A;  2PRN A;  4FOZ A;  5EE2 A;  3VZT X;  3LK3 A;  3DZM A;  2JQY A;  3SYS A;  3VE1 A;  1IZN B;  4JFB A;  4D64 A;  2R4P A;  4RL9 A;  3FYX A;  1MPF A;  3K19 A;  4O4U A;  1YS5 A;  2X9K A;  4C4V A;  4O3Z A;  2Y0H A;  4C00 A;  5PRN A;  4PUX A;  3AA6 A;  4AKM A;  2ZFG A;  3HOE A;  2ODJ A;  4AKR B;  1QJ8 A;  4C69 X;  3LK3 B;  4KR4 A;  3A2S X;  3A0H O;  2ZLD A;  1QJ9 A;  5KAF O;  4N58 A;  2R8A A;  3WU2 O;  3JTY A;  3PQU A;  3POQ A;  4AYI D;  5E79 O;  1PHO A;  4PJ0 O;  4D65 A;  4E1T A;  5AFU L;  3AAE A;  2IWW A;  2XTQ A;  4FMS A;  1IZN A;  3UU2 A;  3AA6 B;  3C5O A;  4UB6 O;  4RJX A;  3BRY A;  3NSG A;  5DL6 A;  1HXT A;  2W81 C;  2F1V A;  3BS0 A;  3LK4 2;  4B61 A;  4LSF A;  4U9C A;  1T1L A;  5G39 A;  2R4O A;  5IYU A;  2J1N A;  4AKR A;  4XNK A;  2XMX A;  5B66 O;  2KC0 A;  2Y7S A;  3VY9 X;  1E54 A;  2R89 A;  3AAE B;  4GCP A;  3SY9 A;  5AFU K;  4O4X A;  5ADX L;  2R4N A;  3UPG A;  3DA4 A;  3JCU O;  4N74 A;  2MNH A;  2M07 A;  1MM5 A;  3SZV A;  3EMN X;  2WJR A;  1ZHX A;  4LSE A; 
#chains in the Genus database with same CATH homology
 2Y2X A;  5GV0 A;  2QTK A;  1H6S 1;  3AA7 B;  4AYE C;  5D5D A;  3POU A;  1GFQ A;  5ADX K;  4GF4 A;  3AA1 B;  3HW9 A;  3HWB A;  2YPV A;  4F4B A;  4G76 A;  4N59 A;  3AAA B;  4O49 A;  3PRN A;  6PRN A;  8PRN A;  3LK2 A;  3T0S A;  4GCS A;  2K0L A;  2LFU A;  2KZ7 A;  2N2L A;  1GFO A;  4FUV A;  2J4U P;  4O3Y A;  2K4T A;  1GFN A;  1Q9F A;  2LHF A;  3PQS A;  1QJP A;  4FZL A;  3RBH A;  4RJW A;  3AA7 A;  1PRN A;  3TZG A;  3POX A;  4FES A;  4GCQ A;  3WI5 A;  4AYM C;  3QRC A;  2M06 A;  3VZU X;  1OPF A;  3LK2 B;  1OSM A;  3WI4 A;  3AA1 A;  2KZ7 B;  1BH3 A;  2Y0L A;  4KR8 A;  3POR A;  3AA0 B;  4E1S A;  3AAA A;  4GHB A;  2F1T A;  3VZW X;  2KDY A;  2KXP A;  3VY8 X;  2O4V A;  3O0E A;  5JDP A;  4O3W A;  2X27 X;  2XTR A;  2MHL A;  1ORM A;  4XNL A;  2XE2 A;  2Y0K A;  3T24 A;  4AZL A;  4KRA A;  2ERV A;  1Q9G A;  1HXX A;  4FZN A;  2KXP B;  3LK4 1;  4BUM X;  4AUI A;  4Z3T A;  2N2M A;  2OMF A;  3AA0 A;  4O3X B;  4AFK A;  3VE2 A;  2XE1 A;  3G7G A;  1THQ A;  5G26 A;  2W80 C;  1P4T A;  5DL8 A;  4RLC A;  4QQ1 A;  4AYN A;  4D5U A;  4FRT A;  1MM4 A;  4LSI A;  4FSP A;  4JCH A;  5T5F A;  2XE3 A;  3DA3 A;  1HXU A;  3QRA A;  1ZHW A;  7PRN A;  1G90 A;  1ZHT A;  2YNK A;  4FZM A;  5FVN A;  3UAQ A;  5DL7 A;  4FRX A;  4RLB A;  4FSO A;  1BT9 A;  1BXW A;  2FGQ X;  2FGR A;  3SY7 A;  2GE4 A;  3T20 A;  1GFM A;  1ZHY A;  1ZHZ A;  2POR A;  2XE5 A;  3HOL A;  3KVD D;  4G75 A;  4LSH A;  5DL5 A;  4AYD C;  4FT6 A;  3SZD A;  3SYB A;  3GP6 A;  2JMM A;  2XG6 A;  3V8U A;  1GFP A;  2PRN A;  4FOZ A;  5EE2 A;  3VZT X;  3LK3 A;  3VE1 A;  3SYS A;  1IZN B;  4JFB A;  4D64 A;  4RL9 A;  3FYX A;  1MPF A;  3K19 A;  4O4U A;  1YS5 A;  4O3Z A;  2Y0H A;  5PRN A;  4PUX A;  3AA6 A;  4AKM A;  2ZFG A;  3HOE A;  2ODJ A;  4AKR B;  1QJ8 A;  4C69 X;  3LK3 B;  4KR4 A;  3A2S X;  2ZLD A;  1QJ9 A;  4N58 A;  3JTY A;  3PQU A;  3POQ A;  4AYI D;  1PHO A;  5AFU L;  4D65 A;  4E1T A;  3AAE A;  2XTQ A;  4FMS A;  1IZN A;  3UU2 A;  3AA6 B;  3C5O A;  4RJX A;  3NSG A;  5DL6 A;  1HXT A;  2W81 C;  2F1V A;  3LK4 2;  4B61 A;  4LSF A;  4U9C A;  5IYU A;  2J1N A;  4AKR A;  4XNK A;  2XMX A;  2KC0 A;  2Y7S A;  3VY9 X;  1E54 A;  3AAE B;  4GCP A;  3SY9 A;  5AFU K;  5ADX L;  4O4X A;  3UPG A;  3DA4 A;  3SZV A;  2MNH A;  2M07 A;  1MM5 A;  3EMN X;  1ZHX A;  4LSE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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