3SY9A

Crystal structure of pseudomonas aeruginosa occd2 (opdc)
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
416
structure length
371
Chain Sequence
EGFIEGSSLQLLTRNYYFNHDRRSKEWAQGFIATFQSGYTPGVVGFGVDAYGMLGLKLYESGKAPDEFSSGGAALKIRAFDTELKLGDQFLSNPVVAGGESRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNDSHHLSWLGGTWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLGRIDNNTYSLHFAVGYRQHTVTAVLQKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNEKSWKLQYDYDFVALGVPGLSASASYSRGKLDLTRVDPDSPGYGGWYSADGKNAKHWERDLDLQYVVQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDEYRVIVDYPIDVF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Pseudomonas aeruginosa
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
molecule keywords Histidine porin OpdC
total genus 101
structure length 371
sequence length 416
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3sy9A01
1HXXA 4GCPA 3T0SA 4LSEA 1MPFA 5DL5A 1HXTA 3PORA 5FVNA 1GFQA 2XE5A 6PRNA 1BH3A 1H6S1 3SYSA 3VZWX 2XE3A 4D64A 4FT6A 3EMNX 2K4TA 2OMFA 1HXUA 4FRTA 1PRNA 4KR4A 3VZTX 4GCSA 4LSHA 2ZFGA 1OSMA 2PRNA 3O0EA 3POUA 3SY9A 5DL6A 3A2SX 3T24A 3VY8X 3SZVA 3JTYA 5DL7A 2XE2A 7PRNA 4AUIA 3PRNA 2Y0KA 3VY9X 1PHOA 4JFBA 3POQA 2PORA 4D5UA 2XG6A 1GFOA 4RJXA 2Y0LA 3SY7A 3SZDA 3SYBA 1E54A 3NSGA 5DL8A 3HWBA 2O4VA 4LSFA 2FGRA 3K19A 4LSIA 4KRAA 3UU2A 2J4UP 4GCQA 2FGQX 4BUMX 2ZLDA 4FMSA 3WI4A 2ODJA 4FRXA 4FOZA 2XE1A 8PRNA 1GFMA 4C69X 5JDPA 4FSOA 3POXA 3FYXA 3T20A 2QTKA 4FSPA 4D65A 1GFNA 2Y2XA 3WI5A 2J1NA 3VZUX 5PRNA 1BT9A 1GFPA 3HW9A 4RJWA 1OPFA 2Y0HA 4KR8A 3UPGA
chains in the Genus database with same CATH superfamily
2X27X 2KXPB 2R4NA 1HXXA 4XNLA 4GCPA 4GF4A 4O3WA 4RLCA 3T0SA 4B61A 2R4LA 4FUVA 4LSEA 3AA6B 3AAEB 2R4PA 2KZ7A 1MPFA 5DL5A 4GHBA 4AYDC 3KVDD 3UAQA 1HXTA 4JCHA 4AYNA 3PORA 5FVNA 1GFQA 1Q9FA 2F1CX 2XE5A 4O3XB 1P4TA 6PRNA 1BH3A 1BXWA 1H6S1 4AYID 1QJ9A 3A0HO 3SYSA 2LFUA 4RLBA 3WU2O 4C4VA 2K0LA 3V8UA 3VZWX 2XE3A 4D64A 3HOLA 4AKRA 4FT6A 1MM5A 3DA3A 3EMNX 2XMXA 4O3ZA 2ERVA 2K4TA 2Y7SA 2YPVA 2OMFA 4N59A 1MM4A 1HXUA 2XTRA 3GP6A 4FRTA 4Z3TA 5KAIO 2IWWA 1PRNA 2M07A 4AFKA 4FZNA 4E1SA 4AZLA 3T20A 4KR4A 3PGUA 3PQSA 5GTIO 3VZTX 4GCSA 1IZNA 5H2FO 1ORMA 3QRCA 2R88A 3AA7A 2M06A 4IL6O 4LSHA 2ZFGA 1OSMA 2PRNA 3O0EA 3POUA 4N74A 4FQEA 3SY9A 3TZGA 5DL6A 5AFUL 3AA1A 3A2SX 4UB8O 3BS0A 5G39A 4QQ1A 3T24A 4PJ0O 4C4VB 3VY8X 3SZVA 3KZIO 3A0BO 3JTYA 4XNKA 4AKRB 5GTHO 5DL7A 2XE2A 3JCUO 2JMMA 4FESA 4AUIA 3PRNA 4AYEC 4CTDA 3HOEA 7PRNA 2Y0KA 3VY9X 1PHOA 4JFBA 2KC0A 2F1VA 3POQA 4RL9A 5G3AA 2PORA 4G75A 3NJTA 2MHLA 1G90A 4K3CA 3BRZA 1IZNB 5D5DA 4D5UA 4AKMA 5B66O 2MNHA 2XG6A 4O4XA 5T5FA 1GFOA 4O3YA 4PUXA 4RJXA 2KZ7B 3DWOX 2N2LA 4PR7A 1Q9GA 2Y0LA 3DWNA 4N58A 4F4BA 3SY7A 3AAAA 5ADXK 3UPGA 1T16A 4U9CA 3SZDA 3SYBA 1E54A 5GV0A 1THQA 3LK3A 4E1TA 5E79O 4O49A 4FZMA 3AA0A 3NSGA 3BRYA 2WJRA 5DL8A 3HWBA 2O4VA 3G7GA 4LSFA 2WJQA 2FGRA 3K19A 4LSIA 4KRAA 3UU2A 2J4UP 4GCQA 2XTQA 3LK2A 2JQYA 4N75A 5ADXL 2R4OA 5TISO 2FGQX 4BUMX 2ZLDA 3LK42 2IWVA 3VE1A 2W80C 3QRAA 1T1LA 4FMSA 3WI4A 2ODJA 4FRXA 4AYMC 4FOZA 5G26A 2XE1A 8PRNA 3RBHA 1GFMA 3AAAB 3PF1A 3AA7B 4C69X 5AFUK 1ZHYA 4C00A 5JDPA 4O4UA 3LK3B 3AA1B 1ZHXA 4UB6O 2KXPA 3AA0B 3C5OA 3PQUA 1QJ8A 4FSOA 4G76A 3POXA 3PGRA 3LK2B 2YNKA 2GE4A 2R89A 2KDYA 2WVPA 2X9KA 3AA6A 3AAEA 2F1TA 3DA4A 1S5LO 2AXTO 2QTKA 3FYXA 5EE2A 5B5EO 4FSPA 4FZLA 2W81C 4D65A 1GFNA 2Y2XA 2N2MA 3WI5A 1QJPA 2J1NA 1YS5A 3VZUX 5IYUA 5PRNA 1ZHWA 3DZMA 1BT9A 3PGSA 3VE2A 1GFPA 1ZHZA 3HW9A 4RJWA 5G38A 1OPFA 2Y0HA 2LHFA 3LK41 4KR8A 5KAFO 2R8AA 1ZHTA 4K3BA
chains in the Genus database with same CATH topology
2X27X 2KXPB 1HXXA 4XNLA 4GCPA 4GF4A 4O3WA 4RLCA 3T0SA 4B61A 4FUVA 4LSEA 3AA6B 3AAEB 2KZ7A 1MPFA 5DL5A 4GHBA 4AYDC 3KVDD 3UAQA 1HXTA 4JCHA 4AYNA 3PORA 5FVNA 1GFQA 1Q9FA 2XE5A 4O3XB 1P4TA 6PRNA 1BH3A 1BXWA 1H6S1 1QJ9A 3SYSA 2LFUA 4RLBA 2K0LA 3V8UA 3VZWX 2XE3A 4D64A 3HOLA 4AKRA 4FT6A 1MM5A 3DA3A 3EMNX 2XMXA 4O3ZA 2ERVA 2K4TA 2Y7SA 2YPVA 2OMFA 4N59A 1MM4A 2XTRA 1HXUA 3GP6A 4FRTA 4Z3TA 1PRNA 2M07A 4AFKA 4FZNA 4E1SA 4AZLA 4KR4A 3PQSA 3VZTX 4GCSA 1IZNA 1ORMA 3QRCA 3AA7A 2M06A 4LSHA 2ZFGA 1OSMA 2PRNA 3O0EA 3POUA 3SY9A 3TZGA 5AFUL 5DL6A 3AA1A 3A2SX 3T24A 4QQ1A 3VY8X 3SZVA 3JTYA 4XNKA 4AKRB 5DL7A 2XE2A 7PRNA 2JMMA 4FESA 4AUIA 3PRNA 4AYEC 3HOEA 2Y0KA 3VY9X 1PHOA 4JFBA 2KC0A 2F1VA 3POQA 4RL9A 2PORA 4G75A 2MHLA 1G90A 1IZNB 5D5DA 4D5UA 4AKMA 2MNHA 2XG6A 4O4XA 5T5FA 1GFOA 4O3YA 4PUXA 4RJXA 2KZ7B 2N2LA 1Q9GA 2Y0LA 4N58A 4F4BA 3SY7A 3AAAA 5ADXK 3SZDA 4U9CA 3SYBA 1E54A 5GV0A 1THQA 3LK3A 4E1TA 4O49A 3AA0A 3NSGA 5DL8A 3VE2A 3HWBA 2O4VA 3G7GA 4LSFA 2FGRA 3K19A 4LSIA 4KRAA 3UU2A 2J4UP 4GCQA 2XTQA 3LK2A 5ADXL 2FGQX 4BUMX 2ZLDA 3LK42 3VE1A 2W80C 3QRAA 4FMSA 3WI4A 2ODJA 4FRXA 4AYMC 4FOZA 5G26A 2XE1A 8PRNA 3RBHA 1GFMA 3AAAB 3AA7B 4C69X 5AFUK 1ZHYA 5JDPA 4O4UA 3LK3B 3AA1B 1ZHXA 2KXPA 3AA0B 3C5OA 3PQUA 1QJ8A 4FSOA 4G76A 3POXA 3LK2B 2YNKA 2GE4A 2KDYA 3AA6A 3AAEA 3FYXA 4FZMA 2F1TA 3DA4A 5EE2A 4AYID 2QTKA 3T20A 4FSPA 4FZLA 2W81C 4D65A 1GFNA 2Y2XA 2N2MA 3WI5A 1QJPA 2J1NA 1YS5A 3VZUX 5IYUA 5PRNA 1ZHWA 1BT9A 1GFPA 1ZHZA 3HW9A 4RJWA 1OPFA 2Y0HA 2LHFA 3LK41 4KR8A 3UPGA 1ZHTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXX A;  4GCP A;  3T0S A;  4LSE A;  1MPF A;  5DL5 A;  1HXT A;  3POR A;  5FVN A;  1GFQ A;  2XE5 A;  6PRN A;  1BH3 A;  1H6S 1;  3SYS A;  3VZW X;  2XE3 A;  4D64 A;  4FT6 A;  3EMN X;  2K4T A;  2OMF A;  1HXU A;  4FRT A;  1PRN A;  4KR4 A;  3VZT X;  4GCS A;  4LSH A;  2ZFG A;  1OSM A;  2PRN A;  3O0E A;  3POU A;  3SY9 A;  5DL6 A;  3A2S X;  3T24 A;  3VY8 X;  3SZV A;  3JTY A;  5DL7 A;  2XE2 A;  7PRN A;  4AUI A;  3PRN A;  2Y0K A;  3VY9 X;  1PHO A;  4JFB A;  3POQ A;  2POR A;  4D5U A;  2XG6 A;  1GFO A;  4RJX A;  2Y0L A;  3SY7 A;  3SZD A;  3SYB A;  1E54 A;  3NSG A;  5DL8 A;  3HWB A;  2O4V A;  4LSF A;  2FGR A;  3K19 A;  4LSI A;  4KRA A;  3UU2 A;  2J4U P;  4GCQ A;  2FGQ X;  4BUM X;  2ZLD A;  4FMS A;  3WI4 A;  2ODJ A;  4FRX A;  4FOZ A;  2XE1 A;  8PRN A;  1GFM A;  4C69 X;  5JDP A;  4FSO A;  3POX A;  3FYX A;  3T20 A;  2QTK A;  4FSP A;  4D65 A;  1GFN A;  2Y2X A;  3WI5 A;  2J1N A;  3VZU X;  5PRN A;  1BT9 A;  1GFP A;  3HW9 A;  4RJW A;  1OPF A;  2Y0H A;  4KR8 A;  3UPG A; 
#chains in the Genus database with same CATH topology
 2X27 X;  2KXP B;  2R4N A;  1HXX A;  4XNL A;  4GCP A;  4GF4 A;  4O3W A;  4RLC A;  3T0S A;  4B61 A;  2R4L A;  4FUV A;  4LSE A;  3AA6 B;  3AAE B;  2R4P A;  2KZ7 A;  1MPF A;  5DL5 A;  4GHB A;  4AYD C;  3KVD D;  3UAQ A;  1HXT A;  4JCH A;  4AYN A;  3POR A;  5FVN A;  1GFQ A;  1Q9F A;  2F1C X;  2XE5 A;  4O3X B;  1P4T A;  6PRN A;  1BH3 A;  1BXW A;  1H6S 1;  4AYI D;  1QJ9 A;  3A0H O;  3SYS A;  2LFU A;  4RLB A;  3WU2 O;  4C4V A;  2K0L A;  3V8U A;  3VZW X;  2XE3 A;  4D64 A;  3HOL A;  4AKR A;  4FT6 A;  1MM5 A;  3DA3 A;  3EMN X;  2XMX A;  4O3Z A;  2ERV A;  2K4T A;  2Y7S A;  2YPV A;  2OMF A;  4N59 A;  1MM4 A;  1HXU A;  2XTR A;  3GP6 A;  4FRT A;  4Z3T A;  5KAI O;  2IWW A;  1PRN A;  2M07 A;  4AFK A;  4FZN A;  4E1S A;  4AZL A;  3T20 A;  4KR4 A;  3PGU A;  3PQS A;  5GTI O;  3VZT X;  4GCS A;  1IZN A;  5H2F O;  1ORM A;  3QRC A;  2R88 A;  3AA7 A;  2M06 A;  4IL6 O;  4LSH A;  2ZFG A;  1OSM A;  2PRN A;  3O0E A;  3POU A;  4N74 A;  4FQE A;  3SY9 A;  3TZG A;  5DL6 A;  5AFU L;  3AA1 A;  3A2S X;  4UB8 O;  3BS0 A;  5G39 A;  4QQ1 A;  3T24 A;  4PJ0 O;  4C4V B;  3VY8 X;  3SZV A;  3KZI O;  3A0B O;  3JTY A;  4XNK A;  4AKR B;  5GTH O;  5DL7 A;  2XE2 A;  3JCU O;  2JMM A;  4FES A;  4AUI A;  3PRN A;  4AYE C;  4CTD A;  3HOE A;  7PRN A;  2Y0K A;  3VY9 X;  1PHO A;  4JFB A;  2KC0 A;  2F1V A;  3POQ A;  4RL9 A;  5G3A A;  2POR A;  4G75 A;  3NJT A;  2MHL A;  1G90 A;  4K3C A;  3BRZ A;  1IZN B;  5D5D A;  4D5U A;  4AKM A;  5B66 O;  2MNH A;  2XG6 A;  4O4X A;  5T5F A;  1GFO A;  4O3Y A;  4PUX A;  4RJX A;  2KZ7 B;  3DWO X;  2N2L A;  4PR7 A;  1Q9G A;  2Y0L A;  3DWN A;  4N58 A;  4F4B A;  3SY7 A;  3AAA A;  5ADX K;  3UPG A;  1T16 A;  4U9C A;  3SZD A;  3SYB A;  1E54 A;  5GV0 A;  1THQ A;  3LK3 A;  4E1T A;  5E79 O;  4O49 A;  4FZM A;  3AA0 A;  3NSG A;  3BRY A;  2WJR A;  5DL8 A;  3HWB A;  2O4V A;  3G7G A;  4LSF A;  2WJQ A;  2FGR A;  3K19 A;  4LSI A;  4KRA A;  3UU2 A;  2J4U P;  4GCQ A;  2XTQ A;  3LK2 A;  2JQY A;  4N75 A;  5ADX L;  2R4O A;  5TIS O;  2FGQ X;  4BUM X;  2ZLD A;  3LK4 2;  2IWV A;  3VE1 A;  2W80 C;  3QRA A;  1T1L A;  4FMS A;  3WI4 A;  2ODJ A;  4FRX A;  4AYM C;  4FOZ A;  5G26 A;  2XE1 A;  8PRN A;  3RBH A;  1GFM A;  3AAA B;  3PF1 A;  3AA7 B;  4C69 X;  5AFU K;  1ZHY A;  4C00 A;  5JDP A;  4O4U A;  3LK3 B;  3AA1 B;  1ZHX A;  4UB6 O;  2KXP A;  3AA0 B;  3C5O A;  3PQU A;  1QJ8 A;  4FSO A;  4G76 A;  3POX A;  3PGR A;  3LK2 B;  2YNK A;  2GE4 A;  2R89 A;  2KDY A;  2WVP A;  2X9K A;  3AA6 A;  3AAE A;  2F1T A;  3DA4 A;  1S5L O;  2AXT O;  2QTK A;  3FYX A;  5EE2 A;  5B5E O;  4FSP A;  4FZL A;  2W81 C;  4D65 A;  1GFN A;  2Y2X A;  2N2M A;  3WI5 A;  1QJP A;  2J1N A;  1YS5 A;  3VZU X;  5IYU A;  5PRN A;  1ZHW A;  3DZM A;  1BT9 A;  3PGS A;  3VE2 A;  1GFP A;  1ZHZ A;  3HW9 A;  4RJW A;  5G38 A;  1OPF A;  2Y0H A;  2LHF A;  3LK4 1;  4KR8 A;  5KAF O;  2R8A A;  1ZHT A;  4K3B A; 
#chains in the Genus database with same CATH homology
 2X27 X;  2KXP B;  1HXX A;  4XNL A;  4GCP A;  4GF4 A;  4O3W A;  4RLC A;  3T0S A;  4B61 A;  4FUV A;  4LSE A;  3AA6 B;  3AAE B;  2KZ7 A;  1MPF A;  5DL5 A;  4GHB A;  4AYD C;  3KVD D;  3UAQ A;  1HXT A;  4JCH A;  4AYN A;  3POR A;  5FVN A;  1GFQ A;  1Q9F A;  2XE5 A;  4O3X B;  1P4T A;  6PRN A;  1BH3 A;  1BXW A;  1H6S 1;  1QJ9 A;  3SYS A;  2LFU A;  4RLB A;  2K0L A;  3V8U A;  3VZW X;  2XE3 A;  4D64 A;  3HOL A;  4AKR A;  4FT6 A;  1MM5 A;  3DA3 A;  3EMN X;  2XMX A;  4O3Z A;  2ERV A;  2K4T A;  2Y7S A;  2YPV A;  2OMF A;  4N59 A;  1MM4 A;  2XTR A;  1HXU A;  3GP6 A;  4FRT A;  4Z3T A;  1PRN A;  2M07 A;  4AFK A;  4FZN A;  4E1S A;  4AZL A;  4KR4 A;  3PQS A;  3VZT X;  4GCS A;  1IZN A;  1ORM A;  3QRC A;  3AA7 A;  2M06 A;  4LSH A;  2ZFG A;  1OSM A;  2PRN A;  3O0E A;  3POU A;  3SY9 A;  3TZG A;  5AFU L;  5DL6 A;  3AA1 A;  3A2S X;  3T24 A;  4QQ1 A;  3VY8 X;  3SZV A;  3JTY A;  4XNK A;  4AKR B;  5DL7 A;  2XE2 A;  7PRN A;  2JMM A;  4FES A;  4AUI A;  3PRN A;  4AYE C;  3HOE A;  2Y0K A;  3VY9 X;  1PHO A;  4JFB A;  2KC0 A;  2F1V A;  3POQ A;  4RL9 A;  2POR A;  4G75 A;  2MHL A;  1G90 A;  1IZN B;  5D5D A;  4D5U A;  4AKM A;  2MNH A;  2XG6 A;  4O4X A;  5T5F A;  1GFO A;  4O3Y A;  4PUX A;  4RJX A;  2KZ7 B;  2N2L A;  1Q9G A;  2Y0L A;  4N58 A;  4F4B A;  3SY7 A;  3AAA A;  5ADX K;  3SZD A;  4U9C A;  3SYB A;  1E54 A;  5GV0 A;  1THQ A;  3LK3 A;  4E1T A;  4O49 A;  3AA0 A;  3NSG A;  5DL8 A;  3VE2 A;  3HWB A;  2O4V A;  3G7G A;  4LSF A;  2FGR A;  3K19 A;  4LSI A;  4KRA A;  3UU2 A;  2J4U P;  4GCQ A;  2XTQ A;  3LK2 A;  5ADX L;  2FGQ X;  4BUM X;  2ZLD A;  3LK4 2;  3VE1 A;  2W80 C;  3QRA A;  4FMS A;  3WI4 A;  2ODJ A;  4FRX A;  4AYM C;  4FOZ A;  5G26 A;  2XE1 A;  8PRN A;  3RBH A;  1GFM A;  3AAA B;  3AA7 B;  4C69 X;  5AFU K;  1ZHY A;  5JDP A;  4O4U A;  3LK3 B;  3AA1 B;  1ZHX A;  2KXP A;  3AA0 B;  3C5O A;  3PQU A;  1QJ8 A;  4FSO A;  4G76 A;  3POX A;  3LK2 B;  2YNK A;  2GE4 A;  2KDY A;  3AA6 A;  3AAE A;  3FYX A;  4FZM A;  2F1T A;  3DA4 A;  5EE2 A;  4AYI D;  2QTK A;  3T20 A;  4FSP A;  4FZL A;  2W81 C;  4D65 A;  1GFN A;  2Y2X A;  2N2M A;  3WI5 A;  1QJP A;  2J1N A;  1YS5 A;  3VZU X;  5IYU A;  5PRN A;  1ZHW A;  1BT9 A;  1GFP A;  1ZHZ A;  3HW9 A;  4RJW A;  1OPF A;  2Y0H A;  2LHF A;  3LK4 1;  4KR8 A;  3UPG A;  1ZHT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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