3VY9X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group h32
Total Genus 88
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Outer membrane protein
publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 88
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy9X00
3O0EA 3SZVA 2J4UP 3POXA 4KRAA 2XG6A 1OPFA 4D5UA 3UPGA 6PRNA 3NSGA 4FMSA 1BH3A 4AUIA 4LSIA 1GFNA 3K19A 3VZTX 4LSEA 3WI4A 2O4VA 2K4TA 4GCPA 3T20A 3SYSA 5JDPA 5DL6A 2XE3A 4JFBA 3SY9A 5DL8A 4GCSA 1H6S1 2Y0KA 4GCQA 3SZDA 8PRNA 4BUMX 5DL7A 3T0SA 4D64A 4FSOA 1HXTA 4D65A 4FRTA 7PRNA 3UU2A 3FYXA 5PRNA 3T24A 1HXXA 2XE5A 3EMNX 2J1NA 3PRNA 4FOZA 3HW9A 3VZWX 4FT6A 3PORA 5DL5A 5FVNA 2OMFA 3SY7A 4RJWA 4FRXA 2ZFGA 2ZLDA 3VZUX 1GFPA 2Y0HA 1MPFA 1GFMA 3A2SX 2XE2A 2QTKA 4KR4A 2FGQX 2PORA 3JTYA 1BT9A 1GFQA 2ODJA 3VY9X 4LSHA 2Y2XA 3VY8X 1HXUA 1PRNA 3WI5A 3SYBA 2Y0LA 3HWBA 2XE1A 4FSPA 2PRNA 4LSFA 1GFOA 1PHOA 2FGRA 4C69X 1OSMA 1E54A 3POUA 4KR8A 3POQA 4RJXA
chains in the Genus database with same CATH superfamily
2KC0A 2WJRA 5D5DA 4AZLA 1ZHZA 2X9KA 3AA0B 3O0EA 4FQEA 3V8UA 5G39A 3SZVA 2R4PA 4RLBA 2J4UP 2KXPB 3POXA 2XG6A 4FZNA 4K3BA 4KRAA 3TZGA 3AAEB 2R89A 4PJ0O 1OPFA 2R4NA 4CTDA 2X27X 3WU2O 4D5UA 3UPGA 3DWNA 3NSGA 4N59A 6PRNA 4FMSA 4QQ1A 1BH3A 2M06A 4AUIA 3DA3A 4LSIA 1ZHXA 1GFNA 5E79O 5ADXK 4IL6O 4RLCA 4UB6O 3K19A 4G75A 4LSEA 3AA7A 3VZTX 2LFUA 3WI4A 4AYID 5AFUK 2WVPA 2O4VA 3HOLA 3JCUO 4FESA 4O49A 1Q9FA 4FZLA 2KDYA 1BXWA 2K4TA 4GCPA 3T20A 3SYSA 5JDPA 5DL6A 2XE3A 4JFBA 3DA4A 3SY9A 5G3AA 2KZ7A 5DL8A 4GCSA 1H6S1 2Y0KA 2F1TA 4GCQA 3PQUA 4XNLA 3SZDA 3AA7B 3GP6A 5B5EO 1T16A 2LHFA 4BUMX 8PRNA 3QRCA 5DL7A 3T0SA 2AXTO 4D64A 4FSOA 1HXTA 2JQYA 1T1LA 3AA1A 3BRZA 1THQA 2N2MA 4D65A 4GF4A 1Q9GA 4O3WA 4FRTA 4U9CA 4AFKA 7PRNA 2IWWA 5TISO 3AA6B 1G90A 1P4TA 3LK41 3UU2A 3FYXA 2ERVA 3PGRA 1HXXA 5PRNA 3T24A 2XE5A 3EMNX 3QRAA 1ZHTA 5GTIO 2J1NA 3PRNA 4FOZA 4AKRA 2IWVA 2F1CX 3G7GA 3HW9A 4FT6A 3AA1B 3BRYA 4G76A 2R88A 3PORA 5DL5A 3VE1A 3VZWX 4E1SA 5H2FO 5B66O 3C5OA 5FVNA 2OMFA 3LK2A 2W81C 3KVDD 4RJWA 2MNHA 3SY7A 3UAQA 4FRXA 2ZFGA 4PUXA 4N58A 3A0BO 4C4VA 1IZNA 2ZLDA 3VZUX 1GFPA 2K0LA 3AA0A 4RL9A 4F4BA 3RBHA 2Y0HA 3VE2A 1MPFA 5GV0A 1S5LO 1QJPA 1ORMA 3PF1A 1GFMA 4FUVA 3A2SX 5G26A 2R4OA 2QTKA 2XE2A 4KR4A 1YS5A 4N74A 2PORA 5G38A 3PQSA 4AYDC 4C00A 5ADXL 2KZ7B 2WJQA 2YPVA 4JCHA 4XNKA 3JTYA 1BT9A 3LK2B 5AFUL 1GFQA 1QJ8A 2ODJA 3LK3A 3VY9X 2JMMA 4AYNA 4C4VB 1IZNB 2Y2XA 3PGUA 1ZHYA 1MM4A 2F1VA 4LSHA 3VY8X 1QJ9A 3BS0A 3DWOX 4O3ZA 1HXUA 1PRNA 2XTQA 4E1TA 2R8AA 3WI5A 3PGSA 4N75A 4AKMA 5IYUA 4PR7A 3SYBA 2Y0LA 3HWBA 2XE1A 5KAIO 4FSPA 3HOEA 3AAAA 2W80C 5KAFO 5GTHO 2PRNA 4O4UA 1ZHWA 4UB8O 5EE2A 4LSFA 4FZMA 4AYEC 4AYMC 3NJTA 4B61A 1GFOA 1MM5A 3LK42 3LK3B 4K3CA 1PHOA 3KZIO 4O3XB 4O4XA 2XMXA 5T5FA 2FGRA 2KXPA 2M07A 2N2LA 4RJXA 3DZMA 4GHBA 4AKRB 3AAEA 2YNKA 4C69X 2MHLA 1OSMA 2Y7SA 2R4LA 1E54A 4Z3TA 2GE4A 4O3YA 3POUA 3A0HO 3AAAB 2XTRA 3AA6A 4KR8A 3POQA 2FGQX
chains in the Genus database with same CATH topology
2KC0A 5D5DA 4AZLA 1ZHZA 3AA0B 3O0EA 3V8UA 3SZVA 4RLBA 2J4UP 2KXPB 3POXA 2XG6A 4FZNA 4KRAA 3TZGA 3AAEB 1OPFA 4D5UA 3UPGA 2X27X 6PRNA 3NSGA 4N59A 4FMSA 4QQ1A 1BH3A 2M06A 4AUIA 3DA3A 4LSIA 1ZHXA 1GFNA 5ADXK 4RLCA 3K19A 4G75A 4LSEA 3AA7A 3VZTX 2LFUA 3WI4A 4AYID 5AFUK 2O4VA 3HOLA 4FESA 4O49A 1Q9FA 4FZLA 2KDYA 1BXWA 2K4TA 4GCPA 3T20A 3SYSA 5JDPA 5DL6A 2XE3A 4JFBA 3DA4A 3SY9A 2KZ7A 5DL8A 4GCSA 1H6S1 2Y0KA 2F1TA 4GCQA 3PQUA 4XNLA 3SZDA 3AA7B 3GP6A 2LHFA 8PRNA 4BUMX 3QRCA 5DL7A 3T0SA 4D64A 4FSOA 1HXTA 3AA1A 1THQA 2N2MA 4D65A 4GF4A 1Q9GA 4O3WA 4FRTA 4U9CA 4AFKA 7PRNA 3AA6B 1G90A 1P4TA 3LK41 3UU2A 3FYXA 2ERVA 5PRNA 1HXXA 3T24A 2XE5A 3EMNX 3QRAA 1ZHTA 2J1NA 3PRNA 4FOZA 4AKRA 3G7GA 3HW9A 4FT6A 3AA1B 4G76A 3VZWX 3PORA 4E1SA 5DL5A 3VE1A 3C5OA 5FVNA 2OMFA 3LK2A 2W81C 3KVDD 4RJWA 2MNHA 3SY7A 3UAQA 4FRXA 2ZFGA 4PUXA 4N58A 1IZNA 2ZLDA 3VZUX 1GFPA 2K0LA 3AA0A 4RL9A 4F4BA 3RBHA 2Y0HA 3VE2A 1MPFA 5GV0A 1QJPA 1ORMA 1GFMA 4FUVA 3A2SX 5G26A 2XE2A 2QTKA 4KR4A 5ADXL 1YS5A 4AYDC 2PORA 3PQSA 2KZ7B 4XNKA 2YPVA 4JCHA 3JTYA 1BT9A 3LK2B 5AFUL 1GFQA 1QJ8A 2ODJA 3LK3A 3VY9X 2JMMA 4AYNA 1IZNB 2Y2XA 4LSHA 1ZHYA 1MM4A 2F1VA 3VY8X 1QJ9A 4O3ZA 1HXUA 1PRNA 2XTQA 4E1TA 3WI5A 4AKMA 5IYUA 3SYBA 2Y0LA 3HWBA 2XE1A 4FSPA 3HOEA 3AAAA 2W80C 2PRNA 4O4UA 1ZHWA 5EE2A 4LSFA 4FZMA 4AYEC 4AYMC 4B61A 1GFOA 1MM5A 3LK42 3LK3B 4O3XB 1PHOA 4O4XA 2XMXA 5T5FA 2FGRA 2KXPA 2M07A 2N2LA 4RJXA 4GHBA 4AKRB 3AAEA 2YNKA 4C69X 2MHLA 1OSMA 2Y7SA 1E54A 4Z3TA 2GE4A 4O3YA 3POUA 3AAAB 2XTRA 3AA6A 4KR8A 3POQA 2FGQX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O0E A;  3SZV A;  2J4U P;  3POX A;  4KRA A;  2XG6 A;  1OPF A;  4D5U A;  3UPG A;  6PRN A;  3NSG A;  4FMS A;  1BH3 A;  4AUI A;  4LSI A;  1GFN A;  3K19 A;  3VZT X;  4LSE A;  3WI4 A;  2O4V A;  2K4T A;  4GCP A;  3T20 A;  3SYS A;  5JDP A;  5DL6 A;  2XE3 A;  4JFB A;  3SY9 A;  5DL8 A;  4GCS A;  1H6S 1;  2Y0K A;  4GCQ A;  3SZD A;  8PRN A;  4BUM X;  5DL7 A;  3T0S A;  4D64 A;  4FSO A;  1HXT A;  4D65 A;  4FRT A;  7PRN A;  3UU2 A;  3FYX A;  5PRN A;  3T24 A;  1HXX A;  2XE5 A;  3EMN X;  2J1N A;  3PRN A;  4FOZ A;  3HW9 A;  3VZW X;  4FT6 A;  3POR A;  5DL5 A;  5FVN A;  2OMF A;  3SY7 A;  4RJW A;  4FRX A;  2ZFG A;  2ZLD A;  3VZU X;  1GFP A;  2Y0H A;  1MPF A;  1GFM A;  3A2S X;  2XE2 A;  2QTK A;  4KR4 A;  2FGQ X;  2POR A;  3JTY A;  1BT9 A;  1GFQ A;  2ODJ A;  3VY9 X;  4LSH A;  2Y2X A;  3VY8 X;  1HXU A;  1PRN A;  3WI5 A;  3SYB A;  2Y0L A;  3HWB A;  2XE1 A;  4FSP A;  2PRN A;  4LSF A;  1GFO A;  1PHO A;  2FGR A;  4C69 X;  1OSM A;  1E54 A;  3POU A;  4KR8 A;  3POQ A;  4RJX A; 
#chains in the Genus database with same CATH topology
 2KC0 A;  2WJR A;  5D5D A;  4AZL A;  1ZHZ A;  2X9K A;  3AA0 B;  3O0E A;  4FQE A;  3V8U A;  5G39 A;  3SZV A;  2R4P A;  4RLB A;  2J4U P;  2KXP B;  3POX A;  2XG6 A;  4FZN A;  4K3B A;  4KRA A;  3TZG A;  3AAE B;  2R89 A;  4PJ0 O;  1OPF A;  2R4N A;  4CTD A;  2X27 X;  3WU2 O;  4D5U A;  3UPG A;  3DWN A;  3NSG A;  4N59 A;  6PRN A;  4FMS A;  4QQ1 A;  1BH3 A;  2M06 A;  4AUI A;  3DA3 A;  4LSI A;  1ZHX A;  1GFN A;  5E79 O;  5ADX K;  4IL6 O;  4RLC A;  4UB6 O;  3K19 A;  4G75 A;  4LSE A;  3AA7 A;  3VZT X;  2LFU A;  3WI4 A;  4AYI D;  5AFU K;  2WVP A;  2O4V A;  3HOL A;  3JCU O;  4FES A;  4O49 A;  1Q9F A;  4FZL A;  2KDY A;  1BXW A;  2K4T A;  4GCP A;  3T20 A;  3SYS A;  5JDP A;  5DL6 A;  2XE3 A;  4JFB A;  3DA4 A;  3SY9 A;  5G3A A;  2KZ7 A;  5DL8 A;  4GCS A;  1H6S 1;  2Y0K A;  2F1T A;  4GCQ A;  3PQU A;  4XNL A;  3SZD A;  3AA7 B;  3GP6 A;  5B5E O;  1T16 A;  2LHF A;  4BUM X;  8PRN A;  3QRC A;  5DL7 A;  3T0S A;  2AXT O;  4D64 A;  4FSO A;  1HXT A;  2JQY A;  1T1L A;  3AA1 A;  3BRZ A;  1THQ A;  2N2M A;  4D65 A;  4GF4 A;  1Q9G A;  4O3W A;  4FRT A;  4U9C A;  4AFK A;  7PRN A;  2IWW A;  5TIS O;  3AA6 B;  1G90 A;  1P4T A;  3LK4 1;  3UU2 A;  3FYX A;  2ERV A;  3PGR A;  1HXX A;  5PRN A;  3T24 A;  2XE5 A;  3EMN X;  3QRA A;  1ZHT A;  5GTI O;  2J1N A;  3PRN A;  4FOZ A;  4AKR A;  2IWV A;  2F1C X;  3G7G A;  3HW9 A;  4FT6 A;  3AA1 B;  3BRY A;  4G76 A;  2R88 A;  3POR A;  5DL5 A;  3VE1 A;  3VZW X;  4E1S A;  5H2F O;  5B66 O;  3C5O A;  5FVN A;  2OMF A;  3LK2 A;  2W81 C;  3KVD D;  4RJW A;  2MNH A;  3SY7 A;  3UAQ A;  4FRX A;  2ZFG A;  4PUX A;  4N58 A;  3A0B O;  4C4V A;  1IZN A;  2ZLD A;  3VZU X;  1GFP A;  2K0L A;  3AA0 A;  4RL9 A;  4F4B A;  3RBH A;  2Y0H A;  3VE2 A;  1MPF A;  5GV0 A;  1S5L O;  1QJP A;  1ORM A;  3PF1 A;  1GFM A;  4FUV A;  3A2S X;  5G26 A;  2R4O A;  2QTK A;  2XE2 A;  4KR4 A;  1YS5 A;  4N74 A;  2POR A;  5G38 A;  3PQS A;  4AYD C;  4C00 A;  5ADX L;  2KZ7 B;  2WJQ A;  2YPV A;  4JCH A;  4XNK A;  3JTY A;  1BT9 A;  3LK2 B;  5AFU L;  1GFQ A;  1QJ8 A;  2ODJ A;  3LK3 A;  3VY9 X;  2JMM A;  4AYN A;  4C4V B;  1IZN B;  2Y2X A;  3PGU A;  1ZHY A;  1MM4 A;  2F1V A;  4LSH A;  3VY8 X;  1QJ9 A;  3BS0 A;  3DWO X;  4O3Z A;  1HXU A;  1PRN A;  2XTQ A;  4E1T A;  2R8A A;  3WI5 A;  3PGS A;  4N75 A;  4AKM A;  5IYU A;  4PR7 A;  3SYB A;  2Y0L A;  3HWB A;  2XE1 A;  5KAI O;  4FSP A;  3HOE A;  3AAA A;  2W80 C;  5KAF O;  5GTH O;  2PRN A;  4O4U A;  1ZHW A;  4UB8 O;  5EE2 A;  4LSF A;  4FZM A;  4AYE C;  4AYM C;  3NJT A;  4B61 A;  1GFO A;  1MM5 A;  3LK4 2;  3LK3 B;  4K3C A;  1PHO A;  3KZI O;  4O3X B;  4O4X A;  2XMX A;  5T5F A;  2FGR A;  2KXP A;  2M07 A;  2N2L A;  4RJX A;  3DZM A;  4GHB A;  4AKR B;  3AAE A;  2YNK A;  4C69 X;  2MHL A;  1OSM A;  2Y7S A;  2R4L A;  1E54 A;  4Z3T A;  2GE4 A;  4O3Y A;  3POU A;  3A0H O;  3AAA B;  2XTR A;  3AA6 A;  4KR8 A;  3POQ A;  2FGQ X; 
#chains in the Genus database with same CATH homology
 2KC0 A;  5D5D A;  4AZL A;  1ZHZ A;  3AA0 B;  3O0E A;  3V8U A;  3SZV A;  4RLB A;  2J4U P;  2KXP B;  3POX A;  2XG6 A;  4FZN A;  4KRA A;  3TZG A;  3AAE B;  1OPF A;  4D5U A;  3UPG A;  2X27 X;  6PRN A;  3NSG A;  4N59 A;  4FMS A;  4QQ1 A;  1BH3 A;  2M06 A;  4AUI A;  3DA3 A;  4LSI A;  1ZHX A;  1GFN A;  5ADX K;  4RLC A;  3K19 A;  4G75 A;  4LSE A;  3AA7 A;  3VZT X;  2LFU A;  3WI4 A;  4AYI D;  5AFU K;  2O4V A;  3HOL A;  4FES A;  4O49 A;  1Q9F A;  4FZL A;  2KDY A;  1BXW A;  2K4T A;  4GCP A;  3T20 A;  3SYS A;  5JDP A;  5DL6 A;  2XE3 A;  4JFB A;  3DA4 A;  3SY9 A;  2KZ7 A;  5DL8 A;  4GCS A;  1H6S 1;  2Y0K A;  2F1T A;  4GCQ A;  3PQU A;  4XNL A;  3SZD A;  3AA7 B;  3GP6 A;  2LHF A;  8PRN A;  4BUM X;  3QRC A;  5DL7 A;  3T0S A;  4D64 A;  4FSO A;  1HXT A;  3AA1 A;  1THQ A;  2N2M A;  4D65 A;  4GF4 A;  1Q9G A;  4O3W A;  4FRT A;  4U9C A;  4AFK A;  7PRN A;  3AA6 B;  1G90 A;  1P4T A;  3LK4 1;  3UU2 A;  3FYX A;  2ERV A;  5PRN A;  1HXX A;  3T24 A;  2XE5 A;  3EMN X;  3QRA A;  1ZHT A;  2J1N A;  3PRN A;  4FOZ A;  4AKR A;  3G7G A;  3HW9 A;  4FT6 A;  3AA1 B;  4G76 A;  3VZW X;  3POR A;  4E1S A;  5DL5 A;  3VE1 A;  3C5O A;  5FVN A;  2OMF A;  3LK2 A;  2W81 C;  3KVD D;  4RJW A;  2MNH A;  3SY7 A;  3UAQ A;  4FRX A;  2ZFG A;  4PUX A;  4N58 A;  1IZN A;  2ZLD A;  3VZU X;  1GFP A;  2K0L A;  3AA0 A;  4RL9 A;  4F4B A;  3RBH A;  2Y0H A;  3VE2 A;  1MPF A;  5GV0 A;  1QJP A;  1ORM A;  1GFM A;  4FUV A;  3A2S X;  5G26 A;  2XE2 A;  2QTK A;  4KR4 A;  5ADX L;  1YS5 A;  4AYD C;  2POR A;  3PQS A;  2KZ7 B;  4XNK A;  2YPV A;  4JCH A;  3JTY A;  1BT9 A;  3LK2 B;  5AFU L;  1GFQ A;  1QJ8 A;  2ODJ A;  3LK3 A;  3VY9 X;  2JMM A;  4AYN A;  1IZN B;  2Y2X A;  4LSH A;  1ZHY A;  1MM4 A;  2F1V A;  3VY8 X;  1QJ9 A;  4O3Z A;  1HXU A;  1PRN A;  2XTQ A;  4E1T A;  3WI5 A;  4AKM A;  5IYU A;  3SYB A;  2Y0L A;  3HWB A;  2XE1 A;  4FSP A;  3HOE A;  3AAA A;  2W80 C;  2PRN A;  4O4U A;  1ZHW A;  5EE2 A;  4LSF A;  4FZM A;  4AYE C;  4AYM C;  4B61 A;  1GFO A;  1MM5 A;  3LK4 2;  3LK3 B;  4O3X B;  1PHO A;  4O4X A;  2XMX A;  5T5F A;  2FGR A;  2KXP A;  2M07 A;  2N2L A;  4RJX A;  4GHB A;  4AKR B;  3AAE A;  2YNK A;  4C69 X;  2MHL A;  1OSM A;  2Y7S A;  1E54 A;  4Z3T A;  2GE4 A;  4O3Y A;  3POU A;  3AAA B;  2XTR A;  3AA6 A;  4KR8 A;  3POQ A;  2FGQ X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...