3VY9X

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group h32
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of a cation transport pathway in Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
molecule keywords Outer membrane protein
total genus 88
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-09-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vy9X00
3UPGA 5DL5A 3EMNX 3SY9A 3T0SA 4FRXA 4RJXA 3POQA 2O4VA 4D65A 1GFQA 3VY8X 2PORA 3A2SX 2J1NA 5DL7A 3JTYA 4C69X 1BH3A 4KRAA 4D64A 4LSEA 2ODJA 2XG6A 3POXA 3HWBA 5DL8A 3SY7A 3PORA 3K19A 4FOZA 3SZVA 4AUIA 1GFOA 2Y2XA 3VZTX 2Y0KA 4FSOA 1HXTA 2ZFGA 3VY9X 2FGRA 4FT6A 4GCQA 4LSFA 4LSIA 3VZUX 2PRNA 3T24A 1GFMA 4FMSA 4D5UA 3NSGA 2K4TA 3SYBA 5FVNA 3UU2A 3POUA 2OMFA 1E54A 1H6S1 2J4UP 3FYXA 2FGQX 2ZLDA 3O0EA 5PRNA 2XE3A 1PRNA 3WI4A 2Y0HA 1MPFA 1OSMA 4GCPA 1BT9A 4KR4A 2QTKA 4RJWA 3SZDA 1PHOA 4BUMX 7PRNA 6PRNA 1HXUA 1OPFA 8PRNA 1GFPA 3PRNA 4JFBA 3T20A 1HXXA 2Y0LA 4FRTA 5JDPA 4KR8A 3WI5A 5DL6A 4FSPA 4LSHA 1GFNA 2XE2A 3SYSA 3HW9A 3VZWX 4GCSA 2XE1A 2XE5A
chains in the Genus database with same CATH superfamily
3AAEA 2LHFA 3UPGA 5DL5A 2R4LA 3EMNX 3SY9A 3T0SA 5AFUL 4FRXA 2IWVA 4RJXA 5G39A 1QJ8A 2LFUA 3POQA 2O4VA 4D65A 1ORMA 1GFQA 2F1TA 2AXTO 4O4XA 2R4PA 2XTQA 3LK3A 3VY8X 2KZ7A 2F1CX 3LK41 2PORA 3A2SX 3DZMA 2J1NA 2WJRA 5G38A 5DL7A 3JTYA 3UAQA 4C69X 1BH3A 4FQEA 1ZHYA 2WJQA 1ZHTA 1BXWA 3AA1A 3BRYA 4KRAA 4RL9A 4U9CA 1ZHWA 4N75A 5AFUK 4D64A 4GF4A 4LSEA 5KAIO 2X9KA 3HOEA 1T16A 4N59A 4N74A 1Q9GA 1S5LO 2ODJA 2XG6A 3AAEB 3POXA 4Z3TA 3AA0A 1IZNA 4K3CA 3HWBA 2Y7SA 3AA7B 5DL8A 3SY7A 1ZHXA 3PORA 1YS5A 4FUVA 3K19A 2R88A 2ERVA 4FOZA 3SZVA 3VE2A 4XNLA 4AUIA 3JCUO 3KZIO 1GFOA 2MHLA 3QRCA 5D5DA 2Y2XA 3DA3A 3NJTA 2GE4A 4UB8O 3VZTX 2MNHA 3PQUA 1MM4A 2Y0KA 4FSOA 5E79O 1MM5A 1HXTA 5GTHO 3HOLA 2ZFGA 2YNKA 3LK42 4RLBA 3VY9X 2FGRA 4FT6A 4GCQA 4LSFA 4LSIA 3G7GA 2XMXA 3VZUX 3PGRA 5GV0A 4N58A 2M07A 2PRNA 4AYNA 3T24A 5TISO 1GFMA 3LK2A 3DWOX 1Q9FA 1ZHZA 4FMSA 1P4TA 2YPVA 3BS0A 1QJ9A 4G76A 4D5UA 2JQYA 5ADXL 2R4NA 3AA0B 2N2MA 3NSGA 4FZMA 4O3ZA 5G3AA 4AKMA 2K4TA 3QRAA 4O49A 3SYBA 3KVDD 4CTDA 2KC0A 3AA1B 5FVNA 2X27X 2KDYA 3UU2A 4PUXA 5T5FA 3POUA 2KXPB 2N2LA 2OMFA 2R8AA 1E54A 1H6S1 3GP6A 2KXPA 4AFKA 4IL6O 2KZ7B 4G75A 3LK3B 2J4UP 3FYXA 2FGQX 2ZLDA 2W80C 3O0EA 4RLCA 2JMMA 1PRNA 2XE3A 5PRNA 3VE1A 3WI4A 4AYMC 4AYEC 5B5EO 5H2FO 2Y0HA 1MPFA 4K3BA 2R89A 3C5OA 1OSMA 3PQSA 4O4UA 4O3WA 4XNKA 4GCPA 3RBHA 2K0LA 1BT9A 5G26A 4KR4A 2QTKA 4QQ1A 4AKRB 5ADXK 3AAAB 4RJWA 3PF1A 2IWWA 3AA6A 3TZGA 1QJPA 3LK2B 4FESA 3SZDA 1PHOA 4O3YA 5KAFO 4E1TA 4BUMX 4C00A 7PRNA 6PRNA 1HXUA 5EE2A 2WVPA 3WU2O 1OPFA 3PGUA 4PR7A 1GFPA 2F1VA 4AYDC 4FZLA 8PRNA 3PRNA 1T1LA 4GHBA 3BRZA 4PJ0O 4C4VB 2XTRA 4C4VA 5B66O 4AYID 4JFBA 3T20A 1HXXA 5GTIO 2Y0LA 4O3XB 4AZLA 4FRTA 3A0HO 1THQA 1G90A 4B61A 2R4OA 3A0BO 3AA7A 5JDPA 3AAAA 4KR8A 3WI5A 5IYUA 3DA4A 4UB6O 4F4BA 4FZNA 3AA6B 3PGSA 2W81C 4FSPA 4JCHA 1GFNA 2XE2A 4LSHA 5DL6A 3SYSA 1IZNB 3HW9A 4GCSA 2M06A 2XE1A 2XE5A 3DWNA 3V8UA 3VZWX 4AKRA 4E1SA
chains in the Genus database with same CATH topology
3AAEA 2LHFA 3UPGA 5DL5A 3EMNX 3SY9A 3T0SA 5AFUL 4FRXA 4RJXA 1QJ8A 2LFUA 3POQA 2O4VA 4D65A 1ORMA 1GFQA 2F1TA 4O4XA 2XTQA 3LK3A 3VY8X 2KZ7A 3LK41 2PORA 3A2SX 2J1NA 5DL7A 3JTYA 3UAQA 4C69X 1BH3A 1ZHYA 3AA1A 1ZHTA 1BXWA 4KRAA 4RL9A 4U9CA 1ZHWA 5AFUK 4D64A 4GF4A 4LSEA 3HOEA 4N59A 1Q9GA 2ODJA 2XG6A 3AAEB 3POXA 4Z3TA 3AA0A 1IZNA 3HWBA 2Y7SA 3AA7B 5DL8A 3SY7A 1ZHXA 3PORA 1YS5A 4FUVA 3K19A 2ERVA 4FOZA 3SZVA 3VE2A 4XNLA 4AUIA 1GFOA 2MHLA 3QRCA 5D5DA 2Y2XA 3DA3A 2GE4A 3VZTX 2MNHA 3PQUA 1MM4A 2Y0KA 4FSOA 1MM5A 1HXTA 2ZFGA 2YNKA 3LK42 4RLBA 3VY9X 2FGRA 4FT6A 4GCQA 4LSFA 4LSIA 3G7GA 2XMXA 3VZUX 5GV0A 4N58A 2M07A 2PRNA 4AYNA 3T24A 1GFMA 3LK2A 1Q9FA 1ZHZA 4FMSA 1P4TA 2YPVA 4G76A 1QJ9A 4D5UA 5ADXL 3AA0B 3NSGA 2N2MA 4FZMA 4O3ZA 4AKMA 2K4TA 3QRAA 4O49A 3SYBA 3KVDD 2KC0A 3AA1B 5FVNA 2X27X 2KDYA 3UU2A 4PUXA 5T5FA 3POUA 2KXPB 2N2LA 2OMFA 1E54A 1H6S1 3GP6A 2KXPA 4AFKA 2KZ7B 4G75A 3LK3B 2J4UP 3FYXA 2FGQX 2ZLDA 2W80C 3O0EA 4RLCA 2JMMA 1PRNA 2XE3A 5PRNA 3VE1A 3WI4A 4AYMC 4AYEC 2Y0HA 1MPFA 4XNKA 3C5OA 1OSMA 3PQSA 4O4UA 4O3WA 3RBHA 4GCPA 2K0LA 1BT9A 5G26A 4KR4A 2QTKA 4QQ1A 4AKRB 5ADXK 3AAAB 4RJWA 3AA6A 3TZGA 1QJPA 3LK2B 4FESA 3SZDA 1PHOA 4O3YA 4E1TA 4BUMX 7PRNA 6PRNA 1HXUA 5EE2A 1OPFA 8PRNA 1GFPA 2F1VA 4AYDC 4FZLA 5IYUA 3PRNA 4GHBA 2XTRA 4AYID 4JFBA 3T20A 1HXXA 2Y0LA 4O3XB 4AZLA 4FRTA 1THQA 1G90A 4B61A 3AA7A 5JDPA 3AAAA 4KR8A 3WI5A 3DA4A 4F4BA 4FZNA 3AA6B 2W81C 4FSPA 4JCHA 1GFNA 2XE2A 4LSHA 5DL6A 3SYSA 1IZNB 3HW9A 4GCSA 2M06A 2XE1A 2XE5A 3HOLA 3V8UA 3VZWX 4AKRA 4E1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UPG A;  5DL5 A;  3EMN X;  3SY9 A;  3T0S A;  4FRX A;  4RJX A;  3POQ A;  2O4V A;  4D65 A;  1GFQ A;  3VY8 X;  2POR A;  3A2S X;  2J1N A;  5DL7 A;  3JTY A;  4C69 X;  1BH3 A;  4KRA A;  4D64 A;  4LSE A;  2ODJ A;  2XG6 A;  3POX A;  3HWB A;  5DL8 A;  3SY7 A;  3POR A;  3K19 A;  4FOZ A;  3SZV A;  4AUI A;  1GFO A;  2Y2X A;  3VZT X;  2Y0K A;  4FSO A;  1HXT A;  2ZFG A;  3VY9 X;  2FGR A;  4FT6 A;  4GCQ A;  4LSF A;  4LSI A;  3VZU X;  2PRN A;  3T24 A;  1GFM A;  4FMS A;  4D5U A;  3NSG A;  2K4T A;  3SYB A;  5FVN A;  3UU2 A;  3POU A;  2OMF A;  1E54 A;  1H6S 1;  2J4U P;  3FYX A;  2FGQ X;  2ZLD A;  3O0E A;  5PRN A;  2XE3 A;  1PRN A;  3WI4 A;  2Y0H A;  1MPF A;  1OSM A;  4GCP A;  1BT9 A;  4KR4 A;  2QTK A;  4RJW A;  3SZD A;  1PHO A;  4BUM X;  7PRN A;  6PRN A;  1HXU A;  1OPF A;  8PRN A;  1GFP A;  3PRN A;  4JFB A;  3T20 A;  1HXX A;  2Y0L A;  4FRT A;  5JDP A;  4KR8 A;  3WI5 A;  5DL6 A;  4FSP A;  4LSH A;  1GFN A;  2XE2 A;  3SYS A;  3HW9 A;  3VZW X;  4GCS A;  2XE1 A;  2XE5 A; 
#chains in the Genus database with same CATH topology
 3AAE A;  2LHF A;  3UPG A;  5DL5 A;  2R4L A;  3EMN X;  3SY9 A;  3T0S A;  5AFU L;  4FRX A;  2IWV A;  4RJX A;  5G39 A;  1QJ8 A;  2LFU A;  3POQ A;  2O4V A;  4D65 A;  1ORM A;  1GFQ A;  2F1T A;  2AXT O;  4O4X A;  2R4P A;  2XTQ A;  3LK3 A;  3VY8 X;  2KZ7 A;  2F1C X;  3LK4 1;  2POR A;  3A2S X;  3DZM A;  2J1N A;  2WJR A;  5G38 A;  5DL7 A;  3JTY A;  3UAQ A;  4C69 X;  1BH3 A;  4FQE A;  1ZHY A;  2WJQ A;  1ZHT A;  1BXW A;  3AA1 A;  3BRY A;  4KRA A;  4RL9 A;  4U9C A;  1ZHW A;  4N75 A;  5AFU K;  4D64 A;  4GF4 A;  4LSE A;  5KAI O;  2X9K A;  3HOE A;  1T16 A;  4N59 A;  4N74 A;  1Q9G A;  1S5L O;  2ODJ A;  2XG6 A;  3AAE B;  3POX A;  4Z3T A;  3AA0 A;  1IZN A;  4K3C A;  3HWB A;  2Y7S A;  3AA7 B;  5DL8 A;  3SY7 A;  1ZHX A;  3POR A;  1YS5 A;  4FUV A;  3K19 A;  2R88 A;  2ERV A;  4FOZ A;  3SZV A;  3VE2 A;  4XNL A;  4AUI A;  3JCU O;  3KZI O;  1GFO A;  2MHL A;  3QRC A;  5D5D A;  2Y2X A;  3DA3 A;  3NJT A;  2GE4 A;  4UB8 O;  3VZT X;  2MNH A;  3PQU A;  1MM4 A;  2Y0K A;  4FSO A;  5E79 O;  1MM5 A;  1HXT A;  5GTH O;  3HOL A;  2ZFG A;  2YNK A;  3LK4 2;  4RLB A;  3VY9 X;  2FGR A;  4FT6 A;  4GCQ A;  4LSF A;  4LSI A;  3G7G A;  2XMX A;  3VZU X;  3PGR A;  5GV0 A;  4N58 A;  2M07 A;  2PRN A;  4AYN A;  3T24 A;  5TIS O;  1GFM A;  3LK2 A;  3DWO X;  1Q9F A;  1ZHZ A;  4FMS A;  1P4T A;  2YPV A;  3BS0 A;  1QJ9 A;  4G76 A;  4D5U A;  2JQY A;  5ADX L;  2R4N A;  3AA0 B;  2N2M A;  3NSG A;  4FZM A;  4O3Z A;  5G3A A;  4AKM A;  2K4T A;  3QRA A;  4O49 A;  3SYB A;  3KVD D;  4CTD A;  2KC0 A;  3AA1 B;  5FVN A;  2X27 X;  2KDY A;  3UU2 A;  4PUX A;  5T5F A;  3POU A;  2KXP B;  2N2L A;  2OMF A;  2R8A A;  1E54 A;  1H6S 1;  3GP6 A;  2KXP A;  4AFK A;  4IL6 O;  2KZ7 B;  4G75 A;  3LK3 B;  2J4U P;  3FYX A;  2FGQ X;  2ZLD A;  2W80 C;  3O0E A;  4RLC A;  2JMM A;  1PRN A;  2XE3 A;  5PRN A;  3VE1 A;  3WI4 A;  4AYM C;  4AYE C;  5B5E O;  5H2F O;  2Y0H A;  1MPF A;  4K3B A;  2R89 A;  3C5O A;  1OSM A;  3PQS A;  4O4U A;  4O3W A;  4XNK A;  4GCP A;  3RBH A;  2K0L A;  1BT9 A;  5G26 A;  4KR4 A;  2QTK A;  4QQ1 A;  4AKR B;  5ADX K;  3AAA B;  4RJW A;  3PF1 A;  2IWW A;  3AA6 A;  3TZG A;  1QJP A;  3LK2 B;  4FES A;  3SZD A;  1PHO A;  4O3Y A;  5KAF O;  4E1T A;  4BUM X;  4C00 A;  7PRN A;  6PRN A;  1HXU A;  5EE2 A;  2WVP A;  3WU2 O;  1OPF A;  3PGU A;  4PR7 A;  1GFP A;  2F1V A;  4AYD C;  4FZL A;  8PRN A;  3PRN A;  1T1L A;  4GHB A;  3BRZ A;  4PJ0 O;  4C4V B;  2XTR A;  4C4V A;  5B66 O;  4AYI D;  4JFB A;  3T20 A;  1HXX A;  5GTI O;  2Y0L A;  4O3X B;  4AZL A;  4FRT A;  3A0H O;  1THQ A;  1G90 A;  4B61 A;  2R4O A;  3A0B O;  3AA7 A;  5JDP A;  3AAA A;  4KR8 A;  3WI5 A;  5IYU A;  3DA4 A;  4UB6 O;  4F4B A;  4FZN A;  3AA6 B;  3PGS A;  2W81 C;  4FSP A;  4JCH A;  1GFN A;  2XE2 A;  4LSH A;  5DL6 A;  3SYS A;  1IZN B;  3HW9 A;  4GCS A;  2M06 A;  2XE1 A;  2XE5 A;  3DWN A;  3V8U A;  3VZW X;  4AKR A;  4E1S A; 
#chains in the Genus database with same CATH homology
 3AAE A;  2LHF A;  3UPG A;  5DL5 A;  3EMN X;  3SY9 A;  3T0S A;  5AFU L;  4FRX A;  4RJX A;  1QJ8 A;  2LFU A;  3POQ A;  2O4V A;  4D65 A;  1ORM A;  1GFQ A;  2F1T A;  4O4X A;  2XTQ A;  3LK3 A;  3VY8 X;  2KZ7 A;  3LK4 1;  2POR A;  3A2S X;  2J1N A;  5DL7 A;  3JTY A;  3UAQ A;  4C69 X;  1BH3 A;  1ZHY A;  3AA1 A;  1ZHT A;  1BXW A;  4KRA A;  4RL9 A;  4U9C A;  1ZHW A;  5AFU K;  4D64 A;  4GF4 A;  4LSE A;  3HOE A;  4N59 A;  1Q9G A;  2ODJ A;  2XG6 A;  3AAE B;  3POX A;  4Z3T A;  3AA0 A;  1IZN A;  3HWB A;  2Y7S A;  3AA7 B;  5DL8 A;  3SY7 A;  1ZHX A;  3POR A;  1YS5 A;  4FUV A;  3K19 A;  2ERV A;  4FOZ A;  3SZV A;  3VE2 A;  4XNL A;  4AUI A;  1GFO A;  2MHL A;  3QRC A;  5D5D A;  2Y2X A;  3DA3 A;  2GE4 A;  3VZT X;  2MNH A;  3PQU A;  1MM4 A;  2Y0K A;  4FSO A;  1MM5 A;  1HXT A;  2ZFG A;  2YNK A;  3LK4 2;  4RLB A;  3VY9 X;  2FGR A;  4FT6 A;  4GCQ A;  4LSF A;  4LSI A;  3G7G A;  2XMX A;  3VZU X;  5GV0 A;  4N58 A;  2M07 A;  2PRN A;  4AYN A;  3T24 A;  1GFM A;  3LK2 A;  1Q9F A;  1ZHZ A;  4FMS A;  1P4T A;  2YPV A;  4G76 A;  1QJ9 A;  4D5U A;  5ADX L;  3AA0 B;  3NSG A;  2N2M A;  4FZM A;  4O3Z A;  4AKM A;  2K4T A;  3QRA A;  4O49 A;  3SYB A;  3KVD D;  2KC0 A;  3AA1 B;  5FVN A;  2X27 X;  2KDY A;  3UU2 A;  4PUX A;  5T5F A;  3POU A;  2KXP B;  2N2L A;  2OMF A;  1E54 A;  1H6S 1;  3GP6 A;  2KXP A;  4AFK A;  2KZ7 B;  4G75 A;  3LK3 B;  2J4U P;  3FYX A;  2FGQ X;  2ZLD A;  2W80 C;  3O0E A;  4RLC A;  2JMM A;  1PRN A;  2XE3 A;  5PRN A;  3VE1 A;  3WI4 A;  4AYM C;  4AYE C;  2Y0H A;  1MPF A;  4XNK A;  3C5O A;  1OSM A;  3PQS A;  4O4U A;  4O3W A;  3RBH A;  4GCP A;  2K0L A;  1BT9 A;  5G26 A;  4KR4 A;  2QTK A;  4QQ1 A;  4AKR B;  5ADX K;  3AAA B;  4RJW A;  3AA6 A;  3TZG A;  1QJP A;  3LK2 B;  4FES A;  3SZD A;  1PHO A;  4O3Y A;  4E1T A;  4BUM X;  7PRN A;  6PRN A;  1HXU A;  5EE2 A;  1OPF A;  8PRN A;  1GFP A;  2F1V A;  4AYD C;  4FZL A;  5IYU A;  3PRN A;  4GHB A;  2XTR A;  4AYI D;  4JFB A;  3T20 A;  1HXX A;  2Y0L A;  4O3X B;  4AZL A;  4FRT A;  1THQ A;  1G90 A;  4B61 A;  3AA7 A;  5JDP A;  3AAA A;  4KR8 A;  3WI5 A;  3DA4 A;  4F4B A;  4FZN A;  3AA6 B;  2W81 C;  4FSP A;  4JCH A;  1GFN A;  2XE2 A;  4LSH A;  5DL6 A;  3SYS A;  1IZN B;  3HW9 A;  4GCS A;  2M06 A;  2XE1 A;  2XE5 A;  3HOL A;  3V8U A;  3VZW X;  4AKR A;  4E1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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