4D65A

Structure of porin omp-pst2 from p. stuartii; the asymmetric unit contains a dimer of trimers.
Total Genus 104
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
343
structure length
343
Chain Sequence
AEVYNKDGNKLDVYGQIDVRHYFADAKSGEDGDDSRVRLGFKGDTQITDQLIGFGRFEWETSTNKAETSNDNQNRLAYAGLKFADYGSLDYGRNYGVIYDTNAWTDVLPLWGADTMDQEDTFMMGRNRNLLTYRNNNGFGYIDGLSFALQYQGKNGDQNKSTGSSALDNNGDGYGFSTAYELGWGLSIGGGYSNSSRTPSQNNIKTGATGKRAEAWNVGSKLELDELYLAAMYGQTLNTTRFGDDDAEAIANKTENLELVALYSFDFGLTPSIGYNQSKGKNLGNYGNKDLVKYIAVGASYDFNKNMAAVIDYKINLLKDNQFTDDYGINTDNVLGLGLIYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Porin self-association enables cell-to-cell contact inProvidencia stuartiifloating communities.
pubmed doi rcsb
molecule tags Transport protein
source organism Providencia stuartii
molecule keywords PORIN 2
total genus 104
structure length 343
sequence length 343
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2014-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4d65A00
4BUMX 3PORA 1GFOA 4LSFA 4LSHA 3SZDA 1BT9A 2PORA 2ODJA 2OMFA 4FSPA 2ZFGA 4D64A 4AUIA 1GFPA 3WI5A 4KRAA 1HXXA 4GCQA 2Y0HA 2XE5A 4GCPA 4KR4A 3VY8X 4C69X 1E54A 4D65A 3O0EA 1H6S1 4D5UA 2J1NA 3JTYA 3VZWX 1HXUA 5DL5A 4RJWA 7PRNA 1OSMA 3K19A 3SZVA 3T24A 1MPFA 1GFMA 5JDPA 2FGQX 3NSGA 2FGRA 3PRNA 2O4VA 3T20A 3HW9A 4LSEA 1PRNA 2K4TA 4FOZA 2ZLDA 4FMSA 2Y0KA 3VY9X 5PRNA 5DL7A 1HXTA 2J4UP 2Y2XA 2QTKA 1PHOA 5FVNA 3UU2A 3A2SX 2XE3A 3SY7A 8PRNA 4RJXA 4LSIA 2XG6A 3SYBA 3SY9A 6PRNA 4KR8A 1BH3A 4JFBA 2XE1A 2XE2A 3WI4A 3UPGA 4FT6A 4FRTA 3VZTX 3T0SA 3HWBA 3POXA 1GFNA 3EMNX 2Y0LA 4FRXA 3FYXA 1GFQA 3POUA 4GCSA 5DL8A 3SYSA 4FSOA 2PRNA 1OPFA 3POQA 5DL6A 3VZUX
chains in the Genus database with same CATH superfamily
2MNHA 4BUMX 4C4VB 2MHLA 1ZHXA 3AAAA 4UB8O 5E79O 3PORA 1GFOA 4LSFA 2R4PA 4CTDA 2K0LA 4LSHA 2R4LA 4FESA 4UB6O 3SZDA 5AFUL 2W81C 4O49A 1BT9A 2PORA 2ODJA 4GHBA 2OMFA 4FSPA 2ZFGA 3PGRA 3DA3A 3GP6A 3DA4A 4XNLA 3LK3A 5TISO 3AAEB 5KAFO 4AUIA 3PQSA 3HOLA 1GFPA 3WI5A 4D64A 1G90A 2GE4A 4KRAA 3WU2O 1HXXA 4RLCA 4GCQA 2Y0HA 2XE5A 5G38A 4GCPA 4PJ0O 1QJ8A 4KR4A 3VY8X 3RBHA 1IZNB 4C69X 1E54A 1T16A 3BRYA 4N58A 4D65A 2M06A 3O0EA 1H6S1 4D5UA 2J1NA 3JTYA 3PGSA 1HXUA 5KAIO 2AXTO 2F1VA 2LHFA 3VZWX 5DL5A 2W80C 4RJWA 4AKRB 4F4BA 5B5EO 4RL9A 1OSMA 3DWNA 7PRNA 3LK42 3G7GA 3K19A 4O3ZA 3SZVA 3T24A 1MPFA 3BS0A 4O3YA 5AFUK 3A0BO 2JQYA 1GFMA 1S5LO 2F1CX 4AFKA 5JDPA 2KZ7B 1ZHZA 4N75A 2X9KA 2R88A 2FGQX 2WVPA 1Q9FA 1MM4A 2N2MA 1BXWA 2FGRA 3NSGA 4FQEA 3V8UA 4AKMA 3AA1B 3VE1A 3PRNA 3AAEA 2O4VA 3DZMA 3T20A 3A0HO 4N59A 2WJQA 1T1LA 3AA7B 3HW9A 4QQ1A 1QJ9A 4LSEA 1PRNA 1ZHTA 4E1TA 2K4TA 1IZNA 4FOZA 3DWOX 1THQA 1ZHWA 3NJTA 4K3BA 2ZLDA 4FMSA 1MM5A 2F1TA 2Y0KA 3AA6A 3VY9X 5PRNA 4K3CA 2KXPB 4U9CA 5DL7A 1HXTA 3UAQA 4C4VA 4AKRA 2J4UP 3LK41 4GF4A 1QJPA 2M07A 2Y2XA 2YPVA 3PGUA 2WJRA 2QTKA 4PUXA 1PHOA 3QRCA 4O4UA 5ADXK 3LK3B 4RLBA 5GTHO 4AYMC 2R89A 2Y7SA 4O3WA 2XTRA 4AYEC 5ADXL 5FVNA 3PQUA 1YS5A 3UU2A 4AYNA 4O3XB 4N74A 3VE2A 2ERVA 2IWVA 3A2SX 2XE3A 5GV0A 3HOEA 3LK2B 3SY7A 2JMMA 2YNKA 3AA1A 5G26A 4Z3TA 4RJXA 4XNKA 8PRNA 2X27X 3AA0B 4LSIA 4E1SA 2R4NA 5H2FO 2XG6A 3SYBA 2IWWA 5IYUA 3SY9A 3AA7A 5D5DA 4KR8A 3AAAB 5EE2A 6PRNA 1Q9GA 4AYDC 1BH3A 4B61A 2LFUA 4JFBA 5G39A 2XE1A 4G76A 4AZLA 1P4TA 2XE2A 3WI4A 4FUVA 3QRAA 3UPGA 3C5OA 2N2LA 2KXPA 2R8AA 4FT6A 3PF1A 4FZMA 2KDYA 4FRTA 2KC0A 4FZNA 3T0SA 4PR7A 4JCHA 3HWBA 3VZTX 4C00A 3POXA 3TZGA 1ZHYA 3KVDD 2KZ7A 1GFNA 3KZIO 3EMNX 3BRZA 2R4OA 2XMXA 2XTQA 2Y0LA 4FRXA 4O4XA 3FYXA 5GTIO 1GFQA 3POUA 4GCSA 5B66O 5DL8A 5T5FA 4FSOA 3SYSA 3LK2A 1ORMA 5G3AA 2PRNA 1OPFA 3JCUO 3POQA 3AA6B 3AA0A 4IL6O 5DL6A 4AYID 4FZLA 3VZUX 4G75A
chains in the Genus database with same CATH topology
2MNHA 4BUMX 2MHLA 1ZHXA 3AAAA 3PORA 1GFOA 4LSFA 2K0LA 4LSHA 4FESA 3SZDA 5AFUL 2W81C 4O49A 1BT9A 2PORA 2ODJA 4GHBA 2OMFA 4FSPA 2ZFGA 4XNLA 3DA3A 3GP6A 3DA4A 3LK3A 3AAEB 4D64A 4AUIA 3PQSA 3HOLA 1GFPA 3WI5A 1G90A 2GE4A 4KRAA 1HXXA 4RLCA 4GCQA 2Y0HA 2XE5A 4GCPA 1QJ8A 4KR4A 3VY8X 3RBHA 1IZNB 4C69X 1E54A 4N58A 4D65A 2M06A 3O0EA 1H6S1 4D5UA 2J1NA 3JTYA 3VZWX 1HXUA 2F1VA 2LHFA 5DL5A 2W80C 4RJWA 4AKRB 4F4BA 7PRNA 4RL9A 1OSMA 3LK42 3G7GA 3K19A 4O3ZA 3SZVA 3T24A 1MPFA 5AFUK 4O3YA 5GV0A 1GFMA 4AFKA 5JDPA 2KZ7B 1ZHZA 2FGQX 1Q9FA 1MM4A 2N2MA 1BXWA 2FGRA 3NSGA 3V8UA 4AKMA 3AA1B 3VE1A 3PRNA 3AAEA 2O4VA 3T20A 4N59A 3AA7B 3HW9A 4QQ1A 1QJ9A 4LSEA 1PRNA 1ZHTA 4E1TA 2K4TA 1IZNA 4FOZA 1THQA 1ZHWA 2ZLDA 4FMSA 1MM5A 2F1TA 2Y0KA 3AA6A 3VY9X 5PRNA 2KXPB 4U9CA 5DL7A 1HXTA 3UAQA 4AKRA 2J4UP 3LK41 4GF4A 1QJPA 2M07A 2Y2XA 2YPVA 4PUXA 2QTKA 1PHOA 3QRCA 4O4UA 5ADXK 3LK3B 4RLBA 4AYMC 2Y7SA 4AYEC 4O3WA 2XTRA 5ADXL 5FVNA 3PQUA 1YS5A 3UU2A 4AYNA 4O3XB 3VE2A 2ERVA 3A2SX 2XE3A 3HOEA 3LK2B 3SY7A 2JMMA 2YNKA 3AA1A 5G26A 4Z3TA 4RJXA 4XNKA 8PRNA 2X27X 3AA0B 4LSIA 4E1SA 2XG6A 3SYBA 5IYUA 3SY9A 3AA7A 5D5DA 4KR8A 3AAAB 5EE2A 6PRNA 1Q9GA 4AYDC 1BH3A 4B61A 2LFUA 4JFBA 4AZLA 2XE1A 4G76A 1P4TA 2XE2A 3WI4A 4FUVA 3QRAA 3UPGA 3C5OA 2N2LA 2KXPA 4FT6A 4FZMA 2KDYA 4FRTA 2KC0A 4FZNA 3T0SA 3VZTX 4JCHA 3HWBA 3POXA 3TZGA 1ZHYA 3KVDD 2KZ7A 1GFNA 3EMNX 2XMXA 2XTQA 2Y0LA 4O4XA 4FRXA 3FYXA 1GFQA 3POUA 4GCSA 5DL8A 5T5FA 4FSOA 3SYSA 3LK2A 1ORMA 2PRNA 1OPFA 3POQA 3AA6B 3AA0A 5DL6A 4AYID 4FZLA 3VZUX 4G75A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BUM X;  3POR A;  1GFO A;  4LSF A;  4LSH A;  3SZD A;  1BT9 A;  2POR A;  2ODJ A;  2OMF A;  4FSP A;  2ZFG A;  4D64 A;  4AUI A;  1GFP A;  3WI5 A;  4KRA A;  1HXX A;  4GCQ A;  2Y0H A;  2XE5 A;  4GCP A;  4KR4 A;  3VY8 X;  4C69 X;  1E54 A;  4D65 A;  3O0E A;  1H6S 1;  4D5U A;  2J1N A;  3JTY A;  3VZW X;  1HXU A;  5DL5 A;  4RJW A;  7PRN A;  1OSM A;  3K19 A;  3SZV A;  3T24 A;  1MPF A;  1GFM A;  5JDP A;  2FGQ X;  3NSG A;  2FGR A;  3PRN A;  2O4V A;  3T20 A;  3HW9 A;  4LSE A;  1PRN A;  2K4T A;  4FOZ A;  2ZLD A;  4FMS A;  2Y0K A;  3VY9 X;  5PRN A;  5DL7 A;  1HXT A;  2J4U P;  2Y2X A;  2QTK A;  1PHO A;  5FVN A;  3UU2 A;  3A2S X;  2XE3 A;  3SY7 A;  8PRN A;  4RJX A;  4LSI A;  2XG6 A;  3SYB A;  3SY9 A;  6PRN A;  4KR8 A;  1BH3 A;  4JFB A;  2XE1 A;  2XE2 A;  3WI4 A;  3UPG A;  4FT6 A;  4FRT A;  3VZT X;  3T0S A;  3HWB A;  3POX A;  1GFN A;  3EMN X;  2Y0L A;  4FRX A;  3FYX A;  1GFQ A;  3POU A;  4GCS A;  5DL8 A;  3SYS A;  4FSO A;  2PRN A;  1OPF A;  3POQ A;  5DL6 A;  3VZU X; 
#chains in the Genus database with same CATH topology
 2MNH A;  4BUM X;  4C4V B;  2MHL A;  1ZHX A;  3AAA A;  4UB8 O;  5E79 O;  3POR A;  1GFO A;  4LSF A;  2R4P A;  4CTD A;  2K0L A;  4LSH A;  2R4L A;  4FES A;  4UB6 O;  3SZD A;  5AFU L;  2W81 C;  4O49 A;  1BT9 A;  2POR A;  2ODJ A;  4GHB A;  2OMF A;  4FSP A;  2ZFG A;  3PGR A;  3DA3 A;  3GP6 A;  3DA4 A;  4XNL A;  3LK3 A;  5TIS O;  3AAE B;  5KAF O;  4AUI A;  3PQS A;  3HOL A;  1GFP A;  3WI5 A;  4D64 A;  1G90 A;  2GE4 A;  4KRA A;  3WU2 O;  1HXX A;  4RLC A;  4GCQ A;  2Y0H A;  2XE5 A;  5G38 A;  4GCP A;  4PJ0 O;  1QJ8 A;  4KR4 A;  3VY8 X;  3RBH A;  1IZN B;  4C69 X;  1E54 A;  1T16 A;  3BRY A;  4N58 A;  4D65 A;  2M06 A;  3O0E A;  1H6S 1;  4D5U A;  2J1N A;  3JTY A;  3PGS A;  1HXU A;  5KAI O;  2AXT O;  2F1V A;  2LHF A;  3VZW X;  5DL5 A;  2W80 C;  4RJW A;  4AKR B;  4F4B A;  5B5E O;  4RL9 A;  1OSM A;  3DWN A;  7PRN A;  3LK4 2;  3G7G A;  3K19 A;  4O3Z A;  3SZV A;  3T24 A;  1MPF A;  3BS0 A;  4O3Y A;  5AFU K;  3A0B O;  2JQY A;  1GFM A;  1S5L O;  2F1C X;  4AFK A;  5JDP A;  2KZ7 B;  1ZHZ A;  4N75 A;  2X9K A;  2R88 A;  2FGQ X;  2WVP A;  1Q9F A;  1MM4 A;  2N2M A;  1BXW A;  2FGR A;  3NSG A;  4FQE A;  3V8U A;  4AKM A;  3AA1 B;  3VE1 A;  3PRN A;  3AAE A;  2O4V A;  3DZM A;  3T20 A;  3A0H O;  4N59 A;  2WJQ A;  1T1L A;  3AA7 B;  3HW9 A;  4QQ1 A;  1QJ9 A;  4LSE A;  1PRN A;  1ZHT A;  4E1T A;  2K4T A;  1IZN A;  4FOZ A;  3DWO X;  1THQ A;  1ZHW A;  3NJT A;  4K3B A;  2ZLD A;  4FMS A;  1MM5 A;  2F1T A;  2Y0K A;  3AA6 A;  3VY9 X;  5PRN A;  4K3C A;  2KXP B;  4U9C A;  5DL7 A;  1HXT A;  3UAQ A;  4C4V A;  4AKR A;  2J4U P;  3LK4 1;  4GF4 A;  1QJP A;  2M07 A;  2Y2X A;  2YPV A;  3PGU A;  2WJR A;  2QTK A;  4PUX A;  1PHO A;  3QRC A;  4O4U A;  5ADX K;  3LK3 B;  4RLB A;  5GTH O;  4AYM C;  2R89 A;  2Y7S A;  4O3W A;  2XTR A;  4AYE C;  5ADX L;  5FVN A;  3PQU A;  1YS5 A;  3UU2 A;  4AYN A;  4O3X B;  4N74 A;  3VE2 A;  2ERV A;  2IWV A;  3A2S X;  2XE3 A;  5GV0 A;  3HOE A;  3LK2 B;  3SY7 A;  2JMM A;  2YNK A;  3AA1 A;  5G26 A;  4Z3T A;  4RJX A;  4XNK A;  8PRN A;  2X27 X;  3AA0 B;  4LSI A;  4E1S A;  2R4N A;  5H2F O;  2XG6 A;  3SYB A;  2IWW A;  5IYU A;  3SY9 A;  3AA7 A;  5D5D A;  4KR8 A;  3AAA B;  5EE2 A;  6PRN A;  1Q9G A;  4AYD C;  1BH3 A;  4B61 A;  2LFU A;  4JFB A;  5G39 A;  2XE1 A;  4G76 A;  4AZL A;  1P4T A;  2XE2 A;  3WI4 A;  4FUV A;  3QRA A;  3UPG A;  3C5O A;  2N2L A;  2KXP A;  2R8A A;  4FT6 A;  3PF1 A;  4FZM A;  2KDY A;  4FRT A;  2KC0 A;  4FZN A;  3T0S A;  4PR7 A;  4JCH A;  3HWB A;  3VZT X;  4C00 A;  3POX A;  3TZG A;  1ZHY A;  3KVD D;  2KZ7 A;  1GFN A;  3KZI O;  3EMN X;  3BRZ A;  2R4O A;  2XMX A;  2XTQ A;  2Y0L A;  4FRX A;  4O4X A;  3FYX A;  5GTI O;  1GFQ A;  3POU A;  4GCS A;  5B66 O;  5DL8 A;  5T5F A;  4FSO A;  3SYS A;  3LK2 A;  1ORM A;  5G3A A;  2PRN A;  1OPF A;  3JCU O;  3POQ A;  3AA6 B;  3AA0 A;  4IL6 O;  5DL6 A;  4AYI D;  4FZL A;  3VZU X;  4G75 A; 
#chains in the Genus database with same CATH homology
 2MNH A;  4BUM X;  2MHL A;  1ZHX A;  3AAA A;  3POR A;  1GFO A;  4LSF A;  2K0L A;  4LSH A;  4FES A;  3SZD A;  5AFU L;  2W81 C;  4O49 A;  1BT9 A;  2POR A;  2ODJ A;  4GHB A;  2OMF A;  4FSP A;  2ZFG A;  4XNL A;  3DA3 A;  3GP6 A;  3DA4 A;  3LK3 A;  3AAE B;  4D64 A;  4AUI A;  3PQS A;  3HOL A;  1GFP A;  3WI5 A;  1G90 A;  2GE4 A;  4KRA A;  1HXX A;  4RLC A;  4GCQ A;  2Y0H A;  2XE5 A;  4GCP A;  1QJ8 A;  4KR4 A;  3VY8 X;  3RBH A;  1IZN B;  4C69 X;  1E54 A;  4N58 A;  4D65 A;  2M06 A;  3O0E A;  1H6S 1;  4D5U A;  2J1N A;  3JTY A;  3VZW X;  1HXU A;  2F1V A;  2LHF A;  5DL5 A;  2W80 C;  4RJW A;  4AKR B;  4F4B A;  7PRN A;  4RL9 A;  1OSM A;  3LK4 2;  3G7G A;  3K19 A;  4O3Z A;  3SZV A;  3T24 A;  1MPF A;  5AFU K;  4O3Y A;  5GV0 A;  1GFM A;  4AFK A;  5JDP A;  2KZ7 B;  1ZHZ A;  2FGQ X;  1Q9F A;  1MM4 A;  2N2M A;  1BXW A;  2FGR A;  3NSG A;  3V8U A;  4AKM A;  3AA1 B;  3VE1 A;  3PRN A;  3AAE A;  2O4V A;  3T20 A;  4N59 A;  3AA7 B;  3HW9 A;  4QQ1 A;  1QJ9 A;  4LSE A;  1PRN A;  1ZHT A;  4E1T A;  2K4T A;  1IZN A;  4FOZ A;  1THQ A;  1ZHW A;  2ZLD A;  4FMS A;  1MM5 A;  2F1T A;  2Y0K A;  3AA6 A;  3VY9 X;  5PRN A;  2KXP B;  4U9C A;  5DL7 A;  1HXT A;  3UAQ A;  4AKR A;  2J4U P;  3LK4 1;  4GF4 A;  1QJP A;  2M07 A;  2Y2X A;  2YPV A;  4PUX A;  2QTK A;  1PHO A;  3QRC A;  4O4U A;  5ADX K;  3LK3 B;  4RLB A;  4AYM C;  2Y7S A;  4AYE C;  4O3W A;  2XTR A;  5ADX L;  5FVN A;  3PQU A;  1YS5 A;  3UU2 A;  4AYN A;  4O3X B;  3VE2 A;  2ERV A;  3A2S X;  2XE3 A;  3HOE A;  3LK2 B;  3SY7 A;  2JMM A;  2YNK A;  3AA1 A;  5G26 A;  4Z3T A;  4RJX A;  4XNK A;  8PRN A;  2X27 X;  3AA0 B;  4LSI A;  4E1S A;  2XG6 A;  3SYB A;  5IYU A;  3SY9 A;  3AA7 A;  5D5D A;  4KR8 A;  3AAA B;  5EE2 A;  6PRN A;  1Q9G A;  4AYD C;  1BH3 A;  4B61 A;  2LFU A;  4JFB A;  4AZL A;  2XE1 A;  4G76 A;  1P4T A;  2XE2 A;  3WI4 A;  4FUV A;  3QRA A;  3UPG A;  3C5O A;  2N2L A;  2KXP A;  4FT6 A;  4FZM A;  2KDY A;  4FRT A;  2KC0 A;  4FZN A;  3T0S A;  3VZT X;  4JCH A;  3HWB A;  3POX A;  3TZG A;  1ZHY A;  3KVD D;  2KZ7 A;  1GFN A;  3EMN X;  2XMX A;  2XTQ A;  2Y0L A;  4O4X A;  4FRX A;  3FYX A;  1GFQ A;  3POU A;  4GCS A;  5DL8 A;  5T5F A;  4FSO A;  3SYS A;  3LK2 A;  1ORM A;  2PRN A;  1OPF A;  3POQ A;  3AA6 B;  3AA0 A;  5DL6 A;  4AYI D;  4FZL A;  3VZU X;  4G75 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...