4KR8A

Salmonella typhi ompf complex with daunomycin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
341
structure length
340
Chain Sequence
b'MEIYNKGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Daunomycin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 69
structure length 340
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr8A00
5PRNA 1HXXA 2J1NA 3POUA 8PRNA 2XE2A 4LSEA 3UPGA 4GCPA 2ODJA 4FOZA 3O0EA 3PRNA 4AUIA 4BUMX 6PRNA 3SYSA 1HXTA 4FRTA 3WI4A 3POQA 3SYBA 3SY7A 2XG6A 2ZLDA 3VZWX 3HW9A 3POXA 2XE1A 3PORA 2K4TA 2FGQX 3VZUX 4FSPA 3T24A 5DL5A 1BH3A 4D5UA 3SY9A 3JTYA 1BT9A 4RJWA 1H6S1 4GCSA 1OPFA 4FMSA 3SZDA 4LSFA 4KR8A 7PRNA 2XE3A 3WI5A 3VY8X 1PHOA 3EMNX 2J4UP 3FYXA 5FVNA 1GFOA 4JFBA 4C69X 2XE5A 4FT6A 4RJXA 5JDPA 1PRNA 4D65A 3NSGA 3T0SA 4FSOA 3VZTX 4LSHA 3SZVA 1GFQA 2ZFGA 4D64A 4KRAA 4FRXA 2O4VA 1E54A 3HWBA 1MPFA 3K19A 2PRNA 1HXUA 2QTKA 3A2SX 4LSIA 2Y0LA 5DL8A 1GFMA 5DL7A 4GCQA 2FGRA 2Y2XA 1GFPA 1GFNA 5DL6A 4KR4A 2OMFA 3UU2A 2Y0KA 3T20A 1OSMA 2PORA 2Y0HA 3VY9X
chains in the Genus database with same CATH superfamily
5PRNA 1HXXA 2J1NA 2KC0A 3G7GA 1BXWA 3POUA 8PRNA 3A0BO 2XE2A 4LSEA 2WJQA 4AYNA 5B66O 3UPGA 4GCPA 2ODJA 2WJRA 4C00A 5TISO 2N2LA 1YS5A 1ZHYA 3O0EA 4FOZA 3PRNA 4XNLA 5T5FA 5KAFO 4AUIA 4GHBA 4BUMX 6PRNA 4K3BA 5ADXL 1P4TA 4FUVA 3SYSA 1HXTA 2X9KA 4E1TA 2R89A 3LK41 4FRTA 2R8AA 4N59A 3POQA 3PGSA 4O3ZA 3SYBA 3WI4A 4F4BA 1T16A 1ZHZA 3SY7A 2JMMA 5B5EO 2XG6A 5E79O 3DWOX 2ZLDA 4AYID 3VZWX 3HW9A 3POXA 2JQYA 3QRCA 1QJ9A 2XE1A 2IWVA 3AA1A 3AA0A 4RLBA 5G3AA 5IYUA 2YPVA 3PORA 2K4TA 2FGQX 2R4OA 3PGRA 4FSPA 3VZUX 5D5DA 5AFUL 2M06A 3BS0A 3PQUA 2W81C 2Y7SA 2KZ7A 2F1CX 4PUXA 3T24A 5DL5A 1BH3A 3AA0B 1ORMA 3AA1B 3SY9A 3JTYA 4D5UA 5ADXK 2KXPA 2R88A 4AYMC 3KVDD 3LK3A 3LK42 1BT9A 4RJWA 1H6S1 4GCSA 1OPFA 2AXTO 3AAEA 4FMSA 4FZNA 2YNKA 2XTQA 2XMXA 3DA3A 4FZMA 4AFKA 2KZ7B 3SZDA 5GTHO 4FESA 2K0LA 4G75A 5GV0A 5G26A 4LSFA 2F1VA 4FQEA 4KR8A 2KXPB 3KZIO 3LK3B 2XE3A 7PRNA 3WI5A 2KDYA 3VY8X 1PHOA 3AAEB 3EMNX 4IL6O 2J4UP 4K3CA 4AZLA 3FYXA 5FVNA 1GFOA 1THQA 4JCHA 4QQ1A 1Q9GA 4JFBA 4C69X 2XE5A 4FT6A 4RJXA 3JCUO 3PF1A 3PGUA 1QJPA 4C4VA 5JDPA 1PRNA 4O3YA 4O3WA 1S5LO 4N75A 2ERVA 4CTDA 3NSGA 4D65A 3T0SA 4FSOA 2GE4A 3HOEA 3VZTX 1QJ8A 4LSHA 1ZHXA 3SZVA 5H2FO 1GFQA 2ZFGA 4O4UA 3HOLA 3A0HO 3BRZA 2MNHA 4D64A 4G76A 4KRAA 4C4VB 4FRXA 3AAAB 3V8UA 2X27X 4FZLA 2O4VA 3UAQA 1E54A 3HWBA 4AKRB 1MPFA 2R4PA 2PRNA 3BRYA 3K19A 4U9CA 1T1LA 1HXUA 3DZMA 3LK2B 4PR7A 2N2MA 5EE2A 4AYEC 1ZHTA 2QTKA 5AFUK 3DA4A 3AA7A 3GP6A 3NJTA 3VE1A 3A2SX 5G39A 4N58A 4O4XA 4PJ0O 3C5OA 2MHLA 2M07A 4O49A 4Z3TA 3AA6B 4LSIA 1IZNB 2LHFA 2Y0LA 3DWNA 5KAIO 3TZGA 3WU2O 4RL9A 5DL8A 3AAAA 5GTIO 1GFMA 3AA7B 2WVPA 3QRAA 4GF4A 4UB6O 5DL7A 3RBHA 1MM4A 4GCQA 4N74A 4AKRA 4E1SA 1Q9FA 2FGRA 2Y2XA 4XNKA 4AKMA 3LK2A 2R4LA 1GFPA 1GFNA 5DL6A 4KR4A 1ZHWA 4B61A 1G90A 2LFUA 2OMFA 5G38A 3PQSA 2R4NA 3UU2A 2IWWA 1MM5A 2Y0KA 3T20A 3AA6A 1IZNA 4RLCA 1OSMA 2PORA 2Y0HA 4O3XB 2XTRA 3VE2A 2F1TA 4AYDC 4UB8O 3VY9X 2W80C
chains in the Genus database with same CATH topology
5PRNA 1HXXA 2J1NA 2KC0A 3G7GA 1BXWA 3POUA 8PRNA 4AYNA 2XE2A 4LSEA 3UPGA 4GCPA 2ODJA 2N2LA 1YS5A 1ZHYA 3O0EA 4FOZA 3PRNA 4XNLA 5T5FA 4AUIA 4GHBA 4BUMX 6PRNA 5ADXL 1P4TA 4FUVA 3SYSA 1HXTA 4E1TA 3LK41 4FRTA 4N59A 4O3ZA 3WI4A 3POQA 3SYBA 4F4BA 1ZHZA 3SY7A 2JMMA 2XG6A 2ZLDA 4AYID 3VZWX 3HW9A 3POXA 3QRCA 1QJ9A 2XE1A 3AA0A 3AA1A 4RLBA 5IYUA 2YPVA 3PORA 2K4TA 2FGQX 3VZUX 4FSPA 5D5DA 5AFUL 2M06A 3PQUA 2W81C 2Y7SA 2KZ7A 4PUXA 3T24A 5DL5A 1BH3A 3AA0B 1ORMA 3AA1B 3SY9A 3JTYA 4D5UA 5ADXK 2KXPA 4AYMC 3KVDD 3LK3A 3LK42 1BT9A 4RJWA 1H6S1 4GCSA 1OPFA 3AAEA 4FMSA 4FZNA 2YNKA 2XTQA 2XMXA 3DA3A 4FZMA 4AFKA 2KZ7B 3SZDA 4FESA 2K0LA 4G75A 5GV0A 5G26A 4LSFA 2F1VA 4KR8A 2KXPB 3LK3B 2XE3A 7PRNA 3WI5A 2KDYA 3VY8X 1PHOA 3AAEB 3EMNX 2J4UP 4AZLA 3FYXA 5FVNA 1GFOA 1THQA 4JCHA 4QQ1A 1Q9GA 4JFBA 4C69X 2XE5A 4FT6A 4RJXA 1QJPA 5JDPA 1PRNA 4O3YA 4O3WA 2ERVA 4D65A 3NSGA 3T0SA 4FSOA 2GE4A 3HOEA 3VZTX 1QJ8A 4LSHA 1ZHXA 3SZVA 1GFQA 2ZFGA 4O4UA 3HOLA 4D64A 2MNHA 4G76A 4KRAA 4FRXA 3AAAB 3V8UA 2X27X 4FZLA 2O4VA 3UAQA 1E54A 3HWBA 4AKRB 1MPFA 3K19A 2PRNA 4U9CA 1HXUA 3LK2B 2N2MA 5EE2A 4AYEC 1ZHTA 2QTKA 5AFUK 3DA4A 3AA7A 3GP6A 3VE1A 3A2SX 4N58A 4O4XA 3C5OA 2MHLA 2M07A 4O49A 4Z3TA 3AA6B 4LSIA 1IZNB 2LHFA 2Y0LA 3TZGA 4RL9A 5DL8A 3AAAA 1GFMA 3AA7B 3QRAA 4GF4A 5DL7A 3RBHA 4AKRA 1MM4A 4GCQA 4E1SA 1Q9FA 2FGRA 2Y2XA 4XNKA 4AKMA 3LK2A 1GFPA 1GFNA 5DL6A 4KR4A 1ZHWA 4B61A 1G90A 2LFUA 2OMFA 3PQSA 3UU2A 1MM5A 2Y0KA 3T20A 3AA6A 1IZNA 4RLCA 1OSMA 2PORA 2Y0HA 4O3XB 2XTRA 3VE2A 2F1TA 4AYDC 3VY9X 2W80C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5PRN A;  1HXX A;  2J1N A;  3POU A;  8PRN A;  2XE2 A;  4LSE A;  3UPG A;  4GCP A;  2ODJ A;  4FOZ A;  3O0E A;  3PRN A;  4AUI A;  4BUM X;  6PRN A;  3SYS A;  1HXT A;  4FRT A;  3WI4 A;  3POQ A;  3SYB A;  3SY7 A;  2XG6 A;  2ZLD A;  3VZW X;  3HW9 A;  3POX A;  2XE1 A;  3POR A;  2K4T A;  2FGQ X;  3VZU X;  4FSP A;  3T24 A;  5DL5 A;  1BH3 A;  4D5U A;  3SY9 A;  3JTY A;  1BT9 A;  4RJW A;  1H6S 1;  4GCS A;  1OPF A;  4FMS A;  3SZD A;  4LSF A;  4KR8 A;  7PRN A;  2XE3 A;  3WI5 A;  3VY8 X;  1PHO A;  3EMN X;  2J4U P;  3FYX A;  5FVN A;  1GFO A;  4JFB A;  4C69 X;  2XE5 A;  4FT6 A;  4RJX A;  5JDP A;  1PRN A;  4D65 A;  3NSG A;  3T0S A;  4FSO A;  3VZT X;  4LSH A;  3SZV A;  1GFQ A;  2ZFG A;  4D64 A;  4KRA A;  4FRX A;  2O4V A;  1E54 A;  3HWB A;  1MPF A;  3K19 A;  2PRN A;  1HXU A;  2QTK A;  3A2S X;  4LSI A;  2Y0L A;  5DL8 A;  1GFM A;  5DL7 A;  4GCQ A;  2FGR A;  2Y2X A;  1GFP A;  1GFN A;  5DL6 A;  4KR4 A;  2OMF A;  3UU2 A;  2Y0K A;  3T20 A;  1OSM A;  2POR A;  2Y0H A;  3VY9 X; 
#chains in the Genus database with same CATH topology
 5PRN A;  1HXX A;  2J1N A;  2KC0 A;  3G7G A;  1BXW A;  3POU A;  8PRN A;  3A0B O;  2XE2 A;  4LSE A;  2WJQ A;  4AYN A;  5B66 O;  3UPG A;  4GCP A;  2ODJ A;  2WJR A;  4C00 A;  5TIS O;  2N2L A;  1YS5 A;  1ZHY A;  3O0E A;  4FOZ A;  3PRN A;  4XNL A;  5T5F A;  5KAF O;  4AUI A;  4GHB A;  4BUM X;  6PRN A;  4K3B A;  5ADX L;  1P4T A;  4FUV A;  3SYS A;  1HXT A;  2X9K A;  4E1T A;  2R89 A;  3LK4 1;  4FRT A;  2R8A A;  4N59 A;  3POQ A;  3PGS A;  4O3Z A;  3SYB A;  3WI4 A;  4F4B A;  1T16 A;  1ZHZ A;  3SY7 A;  2JMM A;  5B5E O;  2XG6 A;  5E79 O;  3DWO X;  2ZLD A;  4AYI D;  3VZW X;  3HW9 A;  3POX A;  2JQY A;  3QRC A;  1QJ9 A;  2XE1 A;  2IWV A;  3AA1 A;  3AA0 A;  4RLB A;  5G3A A;  5IYU A;  2YPV A;  3POR A;  2K4T A;  2FGQ X;  2R4O A;  3PGR A;  4FSP A;  3VZU X;  5D5D A;  5AFU L;  2M06 A;  3BS0 A;  3PQU A;  2W81 C;  2Y7S A;  2KZ7 A;  2F1C X;  4PUX A;  3T24 A;  5DL5 A;  1BH3 A;  3AA0 B;  1ORM A;  3AA1 B;  3SY9 A;  3JTY A;  4D5U A;  5ADX K;  2KXP A;  2R88 A;  4AYM C;  3KVD D;  3LK3 A;  3LK4 2;  1BT9 A;  4RJW A;  1H6S 1;  4GCS A;  1OPF A;  2AXT O;  3AAE A;  4FMS A;  4FZN A;  2YNK A;  2XTQ A;  2XMX A;  3DA3 A;  4FZM A;  4AFK A;  2KZ7 B;  3SZD A;  5GTH O;  4FES A;  2K0L A;  4G75 A;  5GV0 A;  5G26 A;  4LSF A;  2F1V A;  4FQE A;  4KR8 A;  2KXP B;  3KZI O;  3LK3 B;  2XE3 A;  7PRN A;  3WI5 A;  2KDY A;  3VY8 X;  1PHO A;  3AAE B;  3EMN X;  4IL6 O;  2J4U P;  4K3C A;  4AZL A;  3FYX A;  5FVN A;  1GFO A;  1THQ A;  4JCH A;  4QQ1 A;  1Q9G A;  4JFB A;  4C69 X;  2XE5 A;  4FT6 A;  4RJX A;  3JCU O;  3PF1 A;  3PGU A;  1QJP A;  4C4V A;  5JDP A;  1PRN A;  4O3Y A;  4O3W A;  1S5L O;  4N75 A;  2ERV A;  4CTD A;  3NSG A;  4D65 A;  3T0S A;  4FSO A;  2GE4 A;  3HOE A;  3VZT X;  1QJ8 A;  4LSH A;  1ZHX A;  3SZV A;  5H2F O;  1GFQ A;  2ZFG A;  4O4U A;  3HOL A;  3A0H O;  3BRZ A;  2MNH A;  4D64 A;  4G76 A;  4KRA A;  4C4V B;  4FRX A;  3AAA B;  3V8U A;  2X27 X;  4FZL A;  2O4V A;  3UAQ A;  1E54 A;  3HWB A;  4AKR B;  1MPF A;  2R4P A;  2PRN A;  3BRY A;  3K19 A;  4U9C A;  1T1L A;  1HXU A;  3DZM A;  3LK2 B;  4PR7 A;  2N2M A;  5EE2 A;  4AYE C;  1ZHT A;  2QTK A;  5AFU K;  3DA4 A;  3AA7 A;  3GP6 A;  3NJT A;  3VE1 A;  3A2S X;  5G39 A;  4N58 A;  4O4X A;  4PJ0 O;  3C5O A;  2MHL A;  2M07 A;  4O49 A;  4Z3T A;  3AA6 B;  4LSI A;  1IZN B;  2LHF A;  2Y0L A;  3DWN A;  5KAI O;  3TZG A;  3WU2 O;  4RL9 A;  5DL8 A;  3AAA A;  5GTI O;  1GFM A;  3AA7 B;  2WVP A;  3QRA A;  4GF4 A;  4UB6 O;  5DL7 A;  3RBH A;  1MM4 A;  4GCQ A;  4N74 A;  4AKR A;  4E1S A;  1Q9F A;  2FGR A;  2Y2X A;  4XNK A;  4AKM A;  3LK2 A;  2R4L A;  1GFP A;  1GFN A;  5DL6 A;  4KR4 A;  1ZHW A;  4B61 A;  1G90 A;  2LFU A;  2OMF A;  5G38 A;  3PQS A;  2R4N A;  3UU2 A;  2IWW A;  1MM5 A;  2Y0K A;  3T20 A;  3AA6 A;  1IZN A;  4RLC A;  1OSM A;  2POR A;  2Y0H A;  4O3X B;  2XTR A;  3VE2 A;  2F1T A;  4AYD C;  4UB8 O;  3VY9 X;  2W80 C; 
#chains in the Genus database with same CATH homology
 5PRN A;  1HXX A;  2J1N A;  2KC0 A;  3G7G A;  1BXW A;  3POU A;  8PRN A;  4AYN A;  2XE2 A;  4LSE A;  3UPG A;  4GCP A;  2ODJ A;  2N2L A;  1YS5 A;  1ZHY A;  3O0E A;  4FOZ A;  3PRN A;  4XNL A;  5T5F A;  4AUI A;  4GHB A;  4BUM X;  6PRN A;  5ADX L;  1P4T A;  4FUV A;  3SYS A;  1HXT A;  4E1T A;  3LK4 1;  4FRT A;  4N59 A;  4O3Z A;  3WI4 A;  3POQ A;  3SYB A;  4F4B A;  1ZHZ A;  3SY7 A;  2JMM A;  2XG6 A;  2ZLD A;  4AYI D;  3VZW X;  3HW9 A;  3POX A;  3QRC A;  1QJ9 A;  2XE1 A;  3AA0 A;  3AA1 A;  4RLB A;  5IYU A;  2YPV A;  3POR A;  2K4T A;  2FGQ X;  3VZU X;  4FSP A;  5D5D A;  5AFU L;  2M06 A;  3PQU A;  2W81 C;  2Y7S A;  2KZ7 A;  4PUX A;  3T24 A;  5DL5 A;  1BH3 A;  3AA0 B;  1ORM A;  3AA1 B;  3SY9 A;  3JTY A;  4D5U A;  5ADX K;  2KXP A;  4AYM C;  3KVD D;  3LK3 A;  3LK4 2;  1BT9 A;  4RJW A;  1H6S 1;  4GCS A;  1OPF A;  3AAE A;  4FMS A;  4FZN A;  2YNK A;  2XTQ A;  2XMX A;  3DA3 A;  4FZM A;  4AFK A;  2KZ7 B;  3SZD A;  4FES A;  2K0L A;  4G75 A;  5GV0 A;  5G26 A;  4LSF A;  2F1V A;  4KR8 A;  2KXP B;  3LK3 B;  2XE3 A;  7PRN A;  3WI5 A;  2KDY A;  3VY8 X;  1PHO A;  3AAE B;  3EMN X;  2J4U P;  4AZL A;  3FYX A;  5FVN A;  1GFO A;  1THQ A;  4JCH A;  4QQ1 A;  1Q9G A;  4JFB A;  4C69 X;  2XE5 A;  4FT6 A;  4RJX A;  1QJP A;  5JDP A;  1PRN A;  4O3Y A;  4O3W A;  2ERV A;  4D65 A;  3NSG A;  3T0S A;  4FSO A;  2GE4 A;  3HOE A;  3VZT X;  1QJ8 A;  4LSH A;  1ZHX A;  3SZV A;  1GFQ A;  2ZFG A;  4O4U A;  3HOL A;  4D64 A;  2MNH A;  4G76 A;  4KRA A;  4FRX A;  3AAA B;  3V8U A;  2X27 X;  4FZL A;  2O4V A;  3UAQ A;  1E54 A;  3HWB A;  4AKR B;  1MPF A;  3K19 A;  2PRN A;  4U9C A;  1HXU A;  3LK2 B;  2N2M A;  5EE2 A;  4AYE C;  1ZHT A;  2QTK A;  5AFU K;  3DA4 A;  3AA7 A;  3GP6 A;  3VE1 A;  3A2S X;  4N58 A;  4O4X A;  3C5O A;  2MHL A;  2M07 A;  4O49 A;  4Z3T A;  3AA6 B;  4LSI A;  1IZN B;  2LHF A;  2Y0L A;  3TZG A;  4RL9 A;  5DL8 A;  3AAA A;  1GFM A;  3AA7 B;  3QRA A;  4GF4 A;  5DL7 A;  3RBH A;  4AKR A;  1MM4 A;  4GCQ A;  4E1S A;  1Q9F A;  2FGR A;  2Y2X A;  4XNK A;  4AKM A;  3LK2 A;  1GFP A;  1GFN A;  5DL6 A;  4KR4 A;  1ZHW A;  4B61 A;  1G90 A;  2LFU A;  2OMF A;  3PQS A;  3UU2 A;  1MM5 A;  2Y0K A;  3T20 A;  3AA6 A;  1IZN A;  4RLC A;  1OSM A;  2POR A;  2Y0H A;  4O3X B;  2XTR A;  3VE2 A;  2F1T A;  4AYD C;  3VY9 X;  2W80 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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