4KR8A

Salmonella typhi ompf complex with daunomycin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
341
structure length
340
Chain Sequence
MEIYNKGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Daunomycin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
total genus 69
structure length 340
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr8A00
1PHOA 4LSIA 3FYXA 3T20A 4FT6A 3HW9A 2J4UP 4LSFA 3VY8X 2XE2A 4RJWA 2ZFGA 3NSGA 3HWBA 1HXXA 1GFPA 4FMSA 1GFQA 2Y2XA 1OPFA 3POQA 3SY7A 2J1NA 2O4VA 2XE3A 3T24A 2PORA 3VZWX 2FGQX 4FRXA 2ZLDA 2Y0KA 1GFOA 3WI4A 3UPGA 3WI5A 3POUA 2XE5A 3SYSA 4C69X 5JDPA 6PRNA 3JTYA 7PRNA 4BUMX 4KR8A 2XE1A 4D64A 3VY9X 4FOZA 5DL6A 1H6S1 3PRNA 4AUIA 5DL7A 2Y0LA 3K19A 4FSPA 4JFBA 2FGRA 3O0EA 1OSMA 4KRAA 1E54A 3UU2A 3VZUX 3SYBA 1HXTA 3A2SX 1BH3A 4KR4A 4D5UA 4GCSA 4FSOA 5DL5A 3VZTX 1BT9A 3SY9A 5FVNA 8PRNA 2Y0HA 2ODJA 5PRNA 3EMNX 4FRTA 1MPFA 3SZVA 3T0SA 2PRNA 3PORA 2QTKA 1PRNA 1GFNA 4LSEA 4RJXA 2K4TA 3SZDA 5DL8A 1GFMA 4GCQA 3POXA 2OMFA 4GCPA 4LSHA 4D65A 2XG6A 1HXUA
chains in the Genus database with same CATH superfamily
1PHOA 4G75A 2R4PA 4LSIA 3FYXA 4K3CA 2LFUA 3UAQA 4C4VB 3T20A 4FT6A 3HW9A 1ZHXA 2J4UP 4LSFA 4D5UA 4O3WA 1THQA 1ZHTA 5ADXK 1S5LO 3HOLA 4PR7A 4O3XB 3VY8X 2K0LA 2XE2A 5G3AA 4RJWA 2ZFGA 3LK2A 3NSGA 2KC0A 3HWBA 3QRAA 2KZ7B 1HXXA 3LK3B 1BXWA 1T16A 4K3BA 2R89A 1GFPA 4FMSA 4FZNA 5G38A 3PGSA 3AAAA 4AKRA 1GFQA 3KZIO 5IYUA 2R88A 3DA4A 2AXTO 1ZHWA 2Y2XA 1OPFA 4G76A 3G7GA 2ERVA 3POQA 3TZGA 3SY7A 2J1NA 2XMXA 3AA6A 2O4VA 2XE3A 2MNHA 3WU2O 3T24A 5E79O 2MHLA 2PORA 3AA7B 3VZWX 5B66O 2YPVA 3LK42 2FGQX 2WJQA 4FRXA 4UB6O 4AYDC 3AA0B 2ZLDA 2Y0KA 1GFOA 3LK2B 2Y7SA 4RL9A 3WI4A 3BRZA 5GTIO 3POUA 3WI5A 3UPGA 4Z3TA 5T5FA 3DWNA 2XE5A 2M06A 3KVDD 3SYSA 3PQUA 4C69X 5JDPA 1ZHZA 3AAAB 3VE2A 2KXPA 4XNLA 2F1TA 2YNKA 3JTYA 4FESA 4AKMA 6PRNA 4N75A 2GE4A 4BUMX 4KR8A 7PRNA 2XE1A 3AAEB 4D64A 3A0BO 5GV0A 1Q9GA 2F1CX 3VY9X 3NJTA 1ZHYA 1P4TA 2M07A 4FOZA 5DL6A 3AA1A 1H6S1 2R8AA 3PRNA 1QJPA 4FQEA 4AUIA 5DL7A 2Y0LA 3K19A 4FUVA 4AYMC 4FSPA 1ORMA 4JFBA 2XTQA 4E1SA 4FZLA 3PGUA 2JQYA 2FGRA 2KXPB 1IZNA 4JCHA 2WVPA 3O0EA 2IWVA 3C5OA 5EE2A 3BRYA 4N58A 1OSMA 4KRAA 4AYEC 1E54A 3UU2A 3VZUX 4UB8O 3PQSA 4AKRB 4C4VA 4PJ0O 1MM4A 3PF1A 3GP6A 3SYBA 3V8UA 1HXTA 2LHFA 3PGRA 3A0HO 3AA1B 4PUXA 3A2SX 3JCUO 1YS5A 3QRCA 1BH3A 2X9KA 3AA6B 4KR4A 2R4OA 4O4UA 4GCSA 4AFKA 2F1VA 4FSOA 4AYNA 2KZ7A 2R4LA 5DL5A 3VZTX 1BT9A 5TISO 4O3ZA 3SY9A 1QJ8A 4F4BA 5B5EO 5H2FO 5FVNA 1IZNB 8PRNA 1QJ9A 2R4NA 5KAIO 4B61A 2Y0HA 2WJRA 1Q9FA 2ODJA 4IL6O 2X27X 5G26A 4U9CA 4N59A 5PRNA 3EMNX 4FRTA 1MPFA 4XNKA 4CTDA 5D5DA 4O3YA 1T1LA 5GTHO 3DZMA 3LK41 4N74A 3SZVA 3AA7A 5G39A 2N2MA 3T0SA 2PRNA 4AYID 3DWOX 3PORA 3VE1A 3AA0A 4O49A 5ADXL 5KAFO 2JMMA 2XTRA 2N2LA 2QTKA 4AZLA 1MM5A 1PRNA 4RLCA 1G90A 4E1TA 1GFNA 2KDYA 4LSEA 4RJXA 3HOEA 3DA3A 2K4TA 4O4XA 4RLBA 3SZDA 5AFUK 3BS0A 2IWWA 2W80C 1GFMA 4GHBA 5DL8A 4GCQA 4FZMA 4QQ1A 3LK3A 3AAEA 5AFUL 3POXA 2OMFA 4GCPA 4GF4A 2W81C 4LSHA 3RBHA 4D65A 4C00A 2XG6A 1HXUA
chains in the Genus database with same CATH topology
1PHOA 4G75A 4LSIA 3FYXA 3T20A 2LFUA 3UAQA 4FT6A 3HW9A 1ZHXA 2J4UP 4LSFA 4O3WA 1THQA 1ZHTA 5ADXK 3HOLA 4O3XB 3VY8X 2K0LA 2XE2A 4RJWA 2ZFGA 3LK2A 3NSGA 2KC0A 3HWBA 3QRAA 2KZ7B 1HXXA 3LK3B 1BXWA 1GFPA 4FMSA 4FZNA 4AKRA 5IYUA 3AAAA 1GFQA 3DA4A 1ZHWA 2Y2XA 1OPFA 4G76A 3G7GA 2ERVA 3POQA 3TZGA 3SY7A 2J1NA 2XMXA 3AA6A 2O4VA 2XE3A 2MNHA 3T24A 2MHLA 2PORA 3AA7B 3VZWX 2YPVA 3LK42 2FGQX 4FRXA 4AYDC 3AA0B 2ZLDA 2Y0KA 1GFOA 3LK2B 2Y7SA 4RL9A 3WI4A 3UPGA 3WI5A 3POUA 4Z3TA 5T5FA 2XE5A 2M06A 3KVDD 3SYSA 3PQUA 4C69X 5JDPA 1ZHZA 3AAAB 3VE2A 2KXPA 4XNLA 2F1TA 2YNKA 3JTYA 4FESA 4AKMA 6PRNA 7PRNA 2GE4A 4BUMX 4KR8A 2XE1A 3AAEB 4D64A 5GV0A 1Q9GA 3VY9X 1ZHYA 1P4TA 2M07A 4FOZA 5DL6A 3AA1A 1H6S1 3PRNA 1QJPA 4AUIA 5DL7A 2Y0LA 3K19A 4FUVA 4AYMC 4FSPA 1ORMA 4JFBA 2XTQA 4E1SA 4FZLA 2FGRA 2KXPB 1IZNA 4JCHA 3O0EA 3C5OA 5EE2A 4N58A 1OSMA 4KRAA 4AYEC 1E54A 3UU2A 3VZUX 3PQSA 4AKRB 1MM4A 3SYBA 3GP6A 3V8UA 1HXTA 2LHFA 3AA1B 4PUXA 3A2SX 1YS5A 3QRCA 1BH3A 4KR4A 3AA6B 4O4UA 4AYNA 4AFKA 4GCSA 4D5UA 2F1VA 4FSOA 2KZ7A 5DL5A 4F4BA 3VZTX 1BT9A 3SY9A 4O3ZA 1QJ8A 5FVNA 1IZNB 8PRNA 1QJ9A 4B61A 2Y0HA 1Q9FA 2ODJA 2X27X 5G26A 4U9CA 4N59A 5PRNA 3EMNX 4FRTA 1MPFA 4XNKA 5D5DA 4O3YA 3LK41 3SZVA 3AA7A 3T0SA 2N2MA 2PRNA 4AYID 3PORA 3VE1A 5ADXL 3AA0A 4O49A 2JMMA 2XTRA 2N2LA 2QTKA 4AZLA 1MM5A 1PRNA 4RLCA 1G90A 4E1TA 1GFNA 2KDYA 4LSEA 4RJXA 3HOEA 3DA3A 2K4TA 4O4XA 4RLBA 3SZDA 5AFUK 2W80C 1GFMA 4GHBA 5DL8A 4GCQA 4FZMA 4QQ1A 3LK3A 3AAEA 5AFUL 3POXA 2OMFA 4GCPA 4GF4A 2W81C 4LSHA 3RBHA 4D65A 2XG6A 1HXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PHO A;  4LSI A;  3FYX A;  3T20 A;  4FT6 A;  3HW9 A;  2J4U P;  4LSF A;  3VY8 X;  2XE2 A;  4RJW A;  2ZFG A;  3NSG A;  3HWB A;  1HXX A;  1GFP A;  4FMS A;  1GFQ A;  2Y2X A;  1OPF A;  3POQ A;  3SY7 A;  2J1N A;  2O4V A;  2XE3 A;  3T24 A;  2POR A;  3VZW X;  2FGQ X;  4FRX A;  2ZLD A;  2Y0K A;  1GFO A;  3WI4 A;  3UPG A;  3WI5 A;  3POU A;  2XE5 A;  3SYS A;  4C69 X;  5JDP A;  6PRN A;  3JTY A;  7PRN A;  4BUM X;  4KR8 A;  2XE1 A;  4D64 A;  3VY9 X;  4FOZ A;  5DL6 A;  1H6S 1;  3PRN A;  4AUI A;  5DL7 A;  2Y0L A;  3K19 A;  4FSP A;  4JFB A;  2FGR A;  3O0E A;  1OSM A;  4KRA A;  1E54 A;  3UU2 A;  3VZU X;  3SYB A;  1HXT A;  3A2S X;  1BH3 A;  4KR4 A;  4D5U A;  4GCS A;  4FSO A;  5DL5 A;  3VZT X;  1BT9 A;  3SY9 A;  5FVN A;  8PRN A;  2Y0H A;  2ODJ A;  5PRN A;  3EMN X;  4FRT A;  1MPF A;  3SZV A;  3T0S A;  2PRN A;  3POR A;  2QTK A;  1PRN A;  1GFN A;  4LSE A;  4RJX A;  2K4T A;  3SZD A;  5DL8 A;  1GFM A;  4GCQ A;  3POX A;  2OMF A;  4GCP A;  4LSH A;  4D65 A;  2XG6 A;  1HXU A; 
#chains in the Genus database with same CATH topology
 1PHO A;  4G75 A;  2R4P A;  4LSI A;  3FYX A;  4K3C A;  2LFU A;  3UAQ A;  4C4V B;  3T20 A;  4FT6 A;  3HW9 A;  1ZHX A;  2J4U P;  4LSF A;  4D5U A;  4O3W A;  1THQ A;  1ZHT A;  5ADX K;  1S5L O;  3HOL A;  4PR7 A;  4O3X B;  3VY8 X;  2K0L A;  2XE2 A;  5G3A A;  4RJW A;  2ZFG A;  3LK2 A;  3NSG A;  2KC0 A;  3HWB A;  3QRA A;  2KZ7 B;  1HXX A;  3LK3 B;  1BXW A;  1T16 A;  4K3B A;  2R89 A;  1GFP A;  4FMS A;  4FZN A;  5G38 A;  3PGS A;  3AAA A;  4AKR A;  1GFQ A;  3KZI O;  5IYU A;  2R88 A;  3DA4 A;  2AXT O;  1ZHW A;  2Y2X A;  1OPF A;  4G76 A;  3G7G A;  2ERV A;  3POQ A;  3TZG A;  3SY7 A;  2J1N A;  2XMX A;  3AA6 A;  2O4V A;  2XE3 A;  2MNH A;  3WU2 O;  3T24 A;  5E79 O;  2MHL A;  2POR A;  3AA7 B;  3VZW X;  5B66 O;  2YPV A;  3LK4 2;  2FGQ X;  2WJQ A;  4FRX A;  4UB6 O;  4AYD C;  3AA0 B;  2ZLD A;  2Y0K A;  1GFO A;  3LK2 B;  2Y7S A;  4RL9 A;  3WI4 A;  3BRZ A;  5GTI O;  3POU A;  3WI5 A;  3UPG A;  4Z3T A;  5T5F A;  3DWN A;  2XE5 A;  2M06 A;  3KVD D;  3SYS A;  3PQU A;  4C69 X;  5JDP A;  1ZHZ A;  3AAA B;  3VE2 A;  2KXP A;  4XNL A;  2F1T A;  2YNK A;  3JTY A;  4FES A;  4AKM A;  6PRN A;  4N75 A;  2GE4 A;  4BUM X;  4KR8 A;  7PRN A;  2XE1 A;  3AAE B;  4D64 A;  3A0B O;  5GV0 A;  1Q9G A;  2F1C X;  3VY9 X;  3NJT A;  1ZHY A;  1P4T A;  2M07 A;  4FOZ A;  5DL6 A;  3AA1 A;  1H6S 1;  2R8A A;  3PRN A;  1QJP A;  4FQE A;  4AUI A;  5DL7 A;  2Y0L A;  3K19 A;  4FUV A;  4AYM C;  4FSP A;  1ORM A;  4JFB A;  2XTQ A;  4E1S A;  4FZL A;  3PGU A;  2JQY A;  2FGR A;  2KXP B;  1IZN A;  4JCH A;  2WVP A;  3O0E A;  2IWV A;  3C5O A;  5EE2 A;  3BRY A;  4N58 A;  1OSM A;  4KRA A;  4AYE C;  1E54 A;  3UU2 A;  3VZU X;  4UB8 O;  3PQS A;  4AKR B;  4C4V A;  4PJ0 O;  1MM4 A;  3PF1 A;  3GP6 A;  3SYB A;  3V8U A;  1HXT A;  2LHF A;  3PGR A;  3A0H O;  3AA1 B;  4PUX A;  3A2S X;  3JCU O;  1YS5 A;  3QRC A;  1BH3 A;  2X9K A;  3AA6 B;  4KR4 A;  2R4O A;  4O4U A;  4GCS A;  4AFK A;  2F1V A;  4FSO A;  4AYN A;  2KZ7 A;  2R4L A;  5DL5 A;  3VZT X;  1BT9 A;  5TIS O;  4O3Z A;  3SY9 A;  1QJ8 A;  4F4B A;  5B5E O;  5H2F O;  5FVN A;  1IZN B;  8PRN A;  1QJ9 A;  2R4N A;  5KAI O;  4B61 A;  2Y0H A;  2WJR A;  1Q9F A;  2ODJ A;  4IL6 O;  2X27 X;  5G26 A;  4U9C A;  4N59 A;  5PRN A;  3EMN X;  4FRT A;  1MPF A;  4XNK A;  4CTD A;  5D5D A;  4O3Y A;  1T1L A;  5GTH O;  3DZM A;  3LK4 1;  4N74 A;  3SZV A;  3AA7 A;  5G39 A;  2N2M A;  3T0S A;  2PRN A;  4AYI D;  3DWO X;  3POR A;  3VE1 A;  3AA0 A;  4O49 A;  5ADX L;  5KAF O;  2JMM A;  2XTR A;  2N2L A;  2QTK A;  4AZL A;  1MM5 A;  1PRN A;  4RLC A;  1G90 A;  4E1T A;  1GFN A;  2KDY A;  4LSE A;  4RJX A;  3HOE A;  3DA3 A;  2K4T A;  4O4X A;  4RLB A;  3SZD A;  5AFU K;  3BS0 A;  2IWW A;  2W80 C;  1GFM A;  4GHB A;  5DL8 A;  4GCQ A;  4FZM A;  4QQ1 A;  3LK3 A;  3AAE A;  5AFU L;  3POX A;  2OMF A;  4GCP A;  4GF4 A;  2W81 C;  4LSH A;  3RBH A;  4D65 A;  4C00 A;  2XG6 A;  1HXU A; 
#chains in the Genus database with same CATH homology
 1PHO A;  4G75 A;  4LSI A;  3FYX A;  3T20 A;  2LFU A;  3UAQ A;  4FT6 A;  3HW9 A;  1ZHX A;  2J4U P;  4LSF A;  4O3W A;  1THQ A;  1ZHT A;  5ADX K;  3HOL A;  4O3X B;  3VY8 X;  2K0L A;  2XE2 A;  4RJW A;  2ZFG A;  3LK2 A;  3NSG A;  2KC0 A;  3HWB A;  3QRA A;  2KZ7 B;  1HXX A;  3LK3 B;  1BXW A;  1GFP A;  4FMS A;  4FZN A;  4AKR A;  5IYU A;  3AAA A;  1GFQ A;  3DA4 A;  1ZHW A;  2Y2X A;  1OPF A;  4G76 A;  3G7G A;  2ERV A;  3POQ A;  3TZG A;  3SY7 A;  2J1N A;  2XMX A;  3AA6 A;  2O4V A;  2XE3 A;  2MNH A;  3T24 A;  2MHL A;  2POR A;  3AA7 B;  3VZW X;  2YPV A;  3LK4 2;  2FGQ X;  4FRX A;  4AYD C;  3AA0 B;  2ZLD A;  2Y0K A;  1GFO A;  3LK2 B;  2Y7S A;  4RL9 A;  3WI4 A;  3UPG A;  3WI5 A;  3POU A;  4Z3T A;  5T5F A;  2XE5 A;  2M06 A;  3KVD D;  3SYS A;  3PQU A;  4C69 X;  5JDP A;  1ZHZ A;  3AAA B;  3VE2 A;  2KXP A;  4XNL A;  2F1T A;  2YNK A;  3JTY A;  4FES A;  4AKM A;  6PRN A;  7PRN A;  2GE4 A;  4BUM X;  4KR8 A;  2XE1 A;  3AAE B;  4D64 A;  5GV0 A;  1Q9G A;  3VY9 X;  1ZHY A;  1P4T A;  2M07 A;  4FOZ A;  5DL6 A;  3AA1 A;  1H6S 1;  3PRN A;  1QJP A;  4AUI A;  5DL7 A;  2Y0L A;  3K19 A;  4FUV A;  4AYM C;  4FSP A;  1ORM A;  4JFB A;  2XTQ A;  4E1S A;  4FZL A;  2FGR A;  2KXP B;  1IZN A;  4JCH A;  3O0E A;  3C5O A;  5EE2 A;  4N58 A;  1OSM A;  4KRA A;  4AYE C;  1E54 A;  3UU2 A;  3VZU X;  3PQS A;  4AKR B;  1MM4 A;  3SYB A;  3GP6 A;  3V8U A;  1HXT A;  2LHF A;  3AA1 B;  4PUX A;  3A2S X;  1YS5 A;  3QRC A;  1BH3 A;  4KR4 A;  3AA6 B;  4O4U A;  4AYN A;  4AFK A;  4GCS A;  4D5U A;  2F1V A;  4FSO A;  2KZ7 A;  5DL5 A;  4F4B A;  3VZT X;  1BT9 A;  3SY9 A;  4O3Z A;  1QJ8 A;  5FVN A;  1IZN B;  8PRN A;  1QJ9 A;  4B61 A;  2Y0H A;  1Q9F A;  2ODJ A;  2X27 X;  5G26 A;  4U9C A;  4N59 A;  5PRN A;  3EMN X;  4FRT A;  1MPF A;  4XNK A;  5D5D A;  4O3Y A;  3LK4 1;  3SZV A;  3AA7 A;  3T0S A;  2N2M A;  2PRN A;  4AYI D;  3POR A;  3VE1 A;  5ADX L;  3AA0 A;  4O49 A;  2JMM A;  2XTR A;  2N2L A;  2QTK A;  4AZL A;  1MM5 A;  1PRN A;  4RLC A;  1G90 A;  4E1T A;  1GFN A;  2KDY A;  4LSE A;  4RJX A;  3HOE A;  3DA3 A;  2K4T A;  4O4X A;  4RLB A;  3SZD A;  5AFU K;  2W80 C;  1GFM A;  4GHB A;  5DL8 A;  4GCQ A;  4FZM A;  4QQ1 A;  3LK3 A;  3AAE A;  5AFU L;  3POX A;  2OMF A;  4GCP A;  4GF4 A;  2W81 C;  4LSH A;  3RBH A;  4D65 A;  2XG6 A;  1HXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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