4KR8A

Salmonella typhi ompf complex with daunomycin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
341
structure length
340
Chain Sequence
MEIYNKGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Salmonella typhi OmpF complex with Daunomycin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
molecule tags Membrane protein
molecule keywords Outer membrane protein F
total genus 69
structure length 340
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr8A00
2Y0LA 4KRAA 4RJXA 3VY9X 4FMSA 3UPGA 5PRNA 3T20A 3VZTX 3SZDA 3T0SA 1OPFA 1PHOA 4LSEA 1GFPA 3POXA 3PRNA 4LSHA 3VZUX 1E54A 5DL7A 4C69X 8PRNA 3SY9A 4FOZA 5DL6A 3WI4A 2FGQX 4LSIA 2ZFGA 2PRNA 3A2SX 1MPFA 2Y2XA 2O4VA 3UU2A 3POUA 4FRTA 1GFOA 2J1NA 4BUMX 3HW9A 2QTKA 2ZLDA 3FYXA 3WI5A 1OSMA 4RJWA 5FVNA 4LSFA 1HXUA 2FGRA 4GCQA 4D65A 1BT9A 1HXTA 2XE1A 4KR4A 3NSGA 1GFNA 3VY8X 1BH3A 3O0EA 1HXXA 2ODJA 4JFBA 5DL8A 3SY7A 3VZWX 2XE5A 2Y0HA 4D64A 3K19A 7PRNA 4FT6A 4KR8A 2J4UP 2XG6A 2OMFA 6PRNA 2XE3A 3JTYA 1GFQA 3T24A 4FSPA 2Y0KA 2XE2A 5DL5A 5JDPA 1PRNA 3HWBA 1H6S1 4D5UA 3POQA 2PORA 3SYSA 4FRXA 3SYBA 3EMNX 2K4TA 4GCPA 3SZVA 3PORA 4AUIA 1GFMA 4FSOA 4GCSA
chains in the Genus database with same CATH superfamily
2Y0LA 4KRAA 4RJXA 3A0HO 5E79O 3AA1B 2XTRA 3VY9X 1Q9FA 3DA3A 4UB8O 5AFUK 5ADXL 2X27X 4N59A 1ORMA 2R89A 4FMSA 3UPGA 5PRNA 3T20A 3VZTX 3SZDA 4N75A 4U9CA 1OPFA 1ZHZA 4FESA 3T0SA 1MM5A 1PHOA 4LSEA 3BS0A 1GFPA 3POXA 3LK42 4AYDC 3PRNA 4LSHA 3VZUX 1E54A 3PGRA 5EE2A 3AAAB 5DL7A 4C69X 2IWWA 5GV0A 3HOLA 8PRNA 3SY9A 1ZHXA 4FOZA 1T1LA 3LK2B 2IWVA 5DL6A 2Y7SA 4E1SA 4F4BA 3LK41 1ZHYA 4AYMC 3WI4A 2FGQX 4LSIA 3AA6B 4UB6O 2M07A 3PGUA 3RBHA 3JCUO 1G90A 4QQ1A 2ZFGA 4G75A 2PRNA 5G39A 1QJ9A 3A2SX 3AA7B 1MPFA 2GE4A 4N74A 2KXPA 4AYNA 2Y2XA 4PUXA 2O4VA 2MHLA 2F1TA 3NJTA 3POUA 3UU2A 4AYID 4FRTA 1GFOA 2J1NA 4O3WA 5G26A 4AZLA 5ADXK 1YS5A 4BUMX 1QJ8A 3KZIO 4K3BA 3HW9A 4FSOA 2R4NA 3AA7A 3V8UA 1S5LO 5KAIO 2QTKA 2YNKA 4GF4A 2R4OA 2ZLDA 3FYXA 3WI5A 1OSMA 4RJWA 4C00A 5FVNA 4LSFA 4O3XB 4AKRB 1HXUA 2FGRA 1T16A 4GCQA 4B61A 4D65A 4N58A 5G38A 5IYUA 1BT9A 3DWOX 4FZNA 3DWNA 1HXTA 3UAQA 2N2LA 2R88A 2XE1A 5G3AA 2KC0A 4O3YA 3PQUA 3DZMA 4XNLA 4Z3TA 1GFNA 3NSGA 4KR4A 3AAEA 4AKRA 2XTQA 5B5EO 2LFUA 3VY8X 3AAAA 3AA0A 4O3ZA 2AXTO 4PJ0O 5H2FO 1BH3A 3AA1A 4RLBA 3O0EA 2ODJA 1HXXA 2JQYA 2KZ7B 4JFBA 5DL8A 3SY7A 2F1VA 3AAEB 3VZWX 2XE5A 1BXWA 1IZNB 2Y0HA 3BRYA 3AA0B 4O4UA 2W80C 4FZLA 4D64A 3K19A 7PRNA 4FT6A 1ZHTA 4O49A 3DA4A 4KR8A 2KZ7A 3BRZA 2J4UP 1Q9GA 2XG6A 2OMFA 4AYEC 2R8AA 5D5DA 6PRNA 5B66O 2JMMA 2XE3A 3AA6A 4XNKA 1ZHWA 3LK2A 3JTYA 1GFQA 2KDYA 3T24A 4FSPA 2Y0KA 3LK3B 2XE2A 3PF1A 3VE1A 5DL5A 2W81C 4RLCA 2LHFA 2K0LA 2WJQA 4JCHA 5JDPA 2R4LA 4O4XA 2KXPB 1PRNA 1P4TA 3HWBA 3LK3A 3A0BO 4PR7A 5TISO 4AKMA 4C4VA 4FUVA 1H6S1 3GP6A 3KVDD 4D5UA 2YPVA 4FQEA 2MNHA 5KAFO 2F1CX 2R4PA 3HOEA 3POQA 3QRAA 2X9KA 4G76A 5T5FA 3VE2A 4IL6O 2PORA 3SYSA 4RL9A 3PGSA 4E1TA 4FRXA 2WJRA 3SYBA 3EMNX 1IZNA 4C4VB 2K4TA 5AFUL 1THQA 2M06A 4GCPA 3C5OA 5GTIO 3SZVA 3QRCA 3TZGA 3PQSA 4K3CA 2ERVA 4CTDA 3G7GA 4AFKA 4GHBA 3WU2O 2N2MA 4FZMA 5GTHO 1QJPA 3PORA 4AUIA 2XMXA 1MM4A 1GFMA 2WVPA 4GCSA
chains in the Genus database with same CATH topology
2Y0LA 4KRAA 4RJXA 3VY9X 3AA1B 2XTRA 1Q9FA 3DA3A 5AFUK 5ADXL 2X27X 4N59A 1ORMA 4FMSA 3UPGA 5PRNA 3T20A 3VZTX 3SZDA 4U9CA 1OPFA 1ZHZA 4FESA 3T0SA 1MM5A 1PHOA 4LSEA 1GFPA 3POXA 3LK42 4AYDC 3PRNA 4LSHA 3VZUX 1E54A 5EE2A 5DL7A 4C69X 5GV0A 3HOLA 8PRNA 3SY9A 1ZHXA 4FOZA 3LK2B 5DL6A 2Y7SA 4E1SA 4F4BA 3LK41 1ZHYA 4AYMC 3WI4A 2FGQX 4LSIA 3AA6B 2M07A 3RBHA 1G90A 4QQ1A 2ZFGA 4G75A 2PRNA 1QJ9A 3A2SX 3AA7B 1MPFA 2GE4A 4AYNA 2KXPA 2Y2XA 4PUXA 2O4VA 2MHLA 2F1TA 3POUA 3UU2A 4AYID 4FRTA 1GFOA 2J1NA 4O3WA 5G26A 4AZLA 5ADXK 1YS5A 4BUMX 1QJ8A 3HW9A 4FSOA 3AA7A 3V8UA 2QTKA 2YNKA 4GF4A 2ZLDA 3FYXA 3WI5A 1OSMA 4RJWA 5FVNA 4LSFA 4O3XB 4AKRB 1HXUA 2FGRA 4GCQA 4B61A 4D65A 4N58A 5IYUA 1BT9A 4FZNA 3UAQA 1HXTA 2N2LA 2XE1A 2KC0A 4O3YA 3PQUA 4XNLA 4Z3TA 1GFNA 3NSGA 4KR4A 3AAEA 4AKRA 2XTQA 2LFUA 3VY8X 3AAAA 3AA0A 4O3ZA 1BH3A 3AA1A 4RLBA 3O0EA 2ODJA 1HXXA 4JFBA 2KZ7B 5DL8A 3SY7A 2F1VA 3AAEB 3VZWX 2XE5A 1BXWA 2Y0HA 1IZNB 3AA0B 4O4UA 2W80C 4FZLA 4D64A 3K19A 7PRNA 4FT6A 1ZHTA 4O49A 3DA4A 4KR8A 2KZ7A 2J4UP 1Q9GA 2XG6A 2OMFA 4AYEC 6PRNA 5D5DA 2JMMA 2XE3A 3AA6A 4XNKA 1ZHWA 3LK2A 3JTYA 1GFQA 2KDYA 3T24A 4FSPA 2Y0KA 3LK3B 2XE2A 3VE1A 5DL5A 2W81C 4RLCA 2LHFA 2K0LA 4JCHA 5JDPA 4O4XA 2KXPB 1PRNA 1P4TA 3HWBA 3LK3A 4AKMA 4FUVA 1H6S1 3GP6A 3KVDD 4D5UA 2YPVA 2MNHA 3HOEA 3POQA 4G76A 3QRAA 5T5FA 3VE2A 2PORA 3SYSA 4RL9A 4E1TA 4FRXA 3SYBA 3EMNX 1IZNA 5AFUL 2K4TA 1THQA 2M06A 4GCPA 3C5OA 3SZVA 3TZGA 3QRCA 3PQSA 2ERVA 3G7GA 4AFKA 4GHBA 2N2MA 4FZMA 1QJPA 3PORA 4AUIA 2XMXA 1MM4A 1GFMA 3AAAB 4GCSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0L A;  4KRA A;  4RJX A;  3VY9 X;  4FMS A;  3UPG A;  5PRN A;  3T20 A;  3VZT X;  3SZD A;  3T0S A;  1OPF A;  1PHO A;  4LSE A;  1GFP A;  3POX A;  3PRN A;  4LSH A;  3VZU X;  1E54 A;  5DL7 A;  4C69 X;  8PRN A;  3SY9 A;  4FOZ A;  5DL6 A;  3WI4 A;  2FGQ X;  4LSI A;  2ZFG A;  2PRN A;  3A2S X;  1MPF A;  2Y2X A;  2O4V A;  3UU2 A;  3POU A;  4FRT A;  1GFO A;  2J1N A;  4BUM X;  3HW9 A;  2QTK A;  2ZLD A;  3FYX A;  3WI5 A;  1OSM A;  4RJW A;  5FVN A;  4LSF A;  1HXU A;  2FGR A;  4GCQ A;  4D65 A;  1BT9 A;  1HXT A;  2XE1 A;  4KR4 A;  3NSG A;  1GFN A;  3VY8 X;  1BH3 A;  3O0E A;  1HXX A;  2ODJ A;  4JFB A;  5DL8 A;  3SY7 A;  3VZW X;  2XE5 A;  2Y0H A;  4D64 A;  3K19 A;  7PRN A;  4FT6 A;  4KR8 A;  2J4U P;  2XG6 A;  2OMF A;  6PRN A;  2XE3 A;  3JTY A;  1GFQ A;  3T24 A;  4FSP A;  2Y0K A;  2XE2 A;  5DL5 A;  5JDP A;  1PRN A;  3HWB A;  1H6S 1;  4D5U A;  3POQ A;  2POR A;  3SYS A;  4FRX A;  3SYB A;  3EMN X;  2K4T A;  4GCP A;  3SZV A;  3POR A;  4AUI A;  1GFM A;  4FSO A;  4GCS A; 
#chains in the Genus database with same CATH topology
 2Y0L A;  4KRA A;  4RJX A;  3A0H O;  5E79 O;  3AA1 B;  2XTR A;  3VY9 X;  1Q9F A;  3DA3 A;  4UB8 O;  5AFU K;  5ADX L;  2X27 X;  4N59 A;  1ORM A;  2R89 A;  4FMS A;  3UPG A;  5PRN A;  3T20 A;  3VZT X;  3SZD A;  4N75 A;  4U9C A;  1OPF A;  1ZHZ A;  4FES A;  3T0S A;  1MM5 A;  1PHO A;  4LSE A;  3BS0 A;  1GFP A;  3POX A;  3LK4 2;  4AYD C;  3PRN A;  4LSH A;  3VZU X;  1E54 A;  3PGR A;  5EE2 A;  3AAA B;  5DL7 A;  4C69 X;  2IWW A;  5GV0 A;  3HOL A;  8PRN A;  3SY9 A;  1ZHX A;  4FOZ A;  1T1L A;  3LK2 B;  2IWV A;  5DL6 A;  2Y7S A;  4E1S A;  4F4B A;  3LK4 1;  1ZHY A;  4AYM C;  3WI4 A;  2FGQ X;  4LSI A;  3AA6 B;  4UB6 O;  2M07 A;  3PGU A;  3RBH A;  3JCU O;  1G90 A;  4QQ1 A;  2ZFG A;  4G75 A;  2PRN A;  5G39 A;  1QJ9 A;  3A2S X;  3AA7 B;  1MPF A;  2GE4 A;  4N74 A;  2KXP A;  4AYN A;  2Y2X A;  4PUX A;  2O4V A;  2MHL A;  2F1T A;  3NJT A;  3POU A;  3UU2 A;  4AYI D;  4FRT A;  1GFO A;  2J1N A;  4O3W A;  5G26 A;  4AZL A;  5ADX K;  1YS5 A;  4BUM X;  1QJ8 A;  3KZI O;  4K3B A;  3HW9 A;  4FSO A;  2R4N A;  3AA7 A;  3V8U A;  1S5L O;  5KAI O;  2QTK A;  2YNK A;  4GF4 A;  2R4O A;  2ZLD A;  3FYX A;  3WI5 A;  1OSM A;  4RJW A;  4C00 A;  5FVN A;  4LSF A;  4O3X B;  4AKR B;  1HXU A;  2FGR A;  1T16 A;  4GCQ A;  4B61 A;  4D65 A;  4N58 A;  5G38 A;  5IYU A;  1BT9 A;  3DWO X;  4FZN A;  3DWN A;  1HXT A;  3UAQ A;  2N2L A;  2R88 A;  2XE1 A;  5G3A A;  2KC0 A;  4O3Y A;  3PQU A;  3DZM A;  4XNL A;  4Z3T A;  1GFN A;  3NSG A;  4KR4 A;  3AAE A;  4AKR A;  2XTQ A;  5B5E O;  2LFU A;  3VY8 X;  3AAA A;  3AA0 A;  4O3Z A;  2AXT O;  4PJ0 O;  5H2F O;  1BH3 A;  3AA1 A;  4RLB A;  3O0E A;  2ODJ A;  1HXX A;  2JQY A;  2KZ7 B;  4JFB A;  5DL8 A;  3SY7 A;  2F1V A;  3AAE B;  3VZW X;  2XE5 A;  1BXW A;  1IZN B;  2Y0H A;  3BRY A;  3AA0 B;  4O4U A;  2W80 C;  4FZL A;  4D64 A;  3K19 A;  7PRN A;  4FT6 A;  1ZHT A;  4O49 A;  3DA4 A;  4KR8 A;  2KZ7 A;  3BRZ A;  2J4U P;  1Q9G A;  2XG6 A;  2OMF A;  4AYE C;  2R8A A;  5D5D A;  6PRN A;  5B66 O;  2JMM A;  2XE3 A;  3AA6 A;  4XNK A;  1ZHW A;  3LK2 A;  3JTY A;  1GFQ A;  2KDY A;  3T24 A;  4FSP A;  2Y0K A;  3LK3 B;  2XE2 A;  3PF1 A;  3VE1 A;  5DL5 A;  2W81 C;  4RLC A;  2LHF A;  2K0L A;  2WJQ A;  4JCH A;  5JDP A;  2R4L A;  4O4X A;  2KXP B;  1PRN A;  1P4T A;  3HWB A;  3LK3 A;  3A0B O;  4PR7 A;  5TIS O;  4AKM A;  4C4V A;  4FUV A;  1H6S 1;  3GP6 A;  3KVD D;  4D5U A;  2YPV A;  4FQE A;  2MNH A;  5KAF O;  2F1C X;  2R4P A;  3HOE A;  3POQ A;  3QRA A;  2X9K A;  4G76 A;  5T5F A;  3VE2 A;  4IL6 O;  2POR A;  3SYS A;  4RL9 A;  3PGS A;  4E1T A;  4FRX A;  2WJR A;  3SYB A;  3EMN X;  1IZN A;  4C4V B;  2K4T A;  5AFU L;  1THQ A;  2M06 A;  4GCP A;  3C5O A;  5GTI O;  3SZV A;  3QRC A;  3TZG A;  3PQS A;  4K3C A;  2ERV A;  4CTD A;  3G7G A;  4AFK A;  4GHB A;  3WU2 O;  2N2M A;  4FZM A;  5GTH O;  1QJP A;  3POR A;  4AUI A;  2XMX A;  1MM4 A;  1GFM A;  2WVP A;  4GCS A; 
#chains in the Genus database with same CATH homology
 2Y0L A;  4KRA A;  4RJX A;  3VY9 X;  3AA1 B;  2XTR A;  1Q9F A;  3DA3 A;  5AFU K;  5ADX L;  2X27 X;  4N59 A;  1ORM A;  4FMS A;  3UPG A;  5PRN A;  3T20 A;  3VZT X;  3SZD A;  4U9C A;  1OPF A;  1ZHZ A;  4FES A;  3T0S A;  1MM5 A;  1PHO A;  4LSE A;  1GFP A;  3POX A;  3LK4 2;  4AYD C;  3PRN A;  4LSH A;  3VZU X;  1E54 A;  5EE2 A;  5DL7 A;  4C69 X;  5GV0 A;  3HOL A;  8PRN A;  3SY9 A;  1ZHX A;  4FOZ A;  3LK2 B;  5DL6 A;  2Y7S A;  4E1S A;  4F4B A;  3LK4 1;  1ZHY A;  4AYM C;  3WI4 A;  2FGQ X;  4LSI A;  3AA6 B;  2M07 A;  3RBH A;  1G90 A;  4QQ1 A;  2ZFG A;  4G75 A;  2PRN A;  1QJ9 A;  3A2S X;  3AA7 B;  1MPF A;  2GE4 A;  4AYN A;  2KXP A;  2Y2X A;  4PUX A;  2O4V A;  2MHL A;  2F1T A;  3POU A;  3UU2 A;  4AYI D;  4FRT A;  1GFO A;  2J1N A;  4O3W A;  5G26 A;  4AZL A;  5ADX K;  1YS5 A;  4BUM X;  1QJ8 A;  3HW9 A;  4FSO A;  3AA7 A;  3V8U A;  2QTK A;  2YNK A;  4GF4 A;  2ZLD A;  3FYX A;  3WI5 A;  1OSM A;  4RJW A;  5FVN A;  4LSF A;  4O3X B;  4AKR B;  1HXU A;  2FGR A;  4GCQ A;  4B61 A;  4D65 A;  4N58 A;  5IYU A;  1BT9 A;  4FZN A;  3UAQ A;  1HXT A;  2N2L A;  2XE1 A;  2KC0 A;  4O3Y A;  3PQU A;  4XNL A;  4Z3T A;  1GFN A;  3NSG A;  4KR4 A;  3AAE A;  4AKR A;  2XTQ A;  2LFU A;  3VY8 X;  3AAA A;  3AA0 A;  4O3Z A;  1BH3 A;  3AA1 A;  4RLB A;  3O0E A;  2ODJ A;  1HXX A;  4JFB A;  2KZ7 B;  5DL8 A;  3SY7 A;  2F1V A;  3AAE B;  3VZW X;  2XE5 A;  1BXW A;  2Y0H A;  1IZN B;  3AA0 B;  4O4U A;  2W80 C;  4FZL A;  4D64 A;  3K19 A;  7PRN A;  4FT6 A;  1ZHT A;  4O49 A;  3DA4 A;  4KR8 A;  2KZ7 A;  2J4U P;  1Q9G A;  2XG6 A;  2OMF A;  4AYE C;  6PRN A;  5D5D A;  2JMM A;  2XE3 A;  3AA6 A;  4XNK A;  1ZHW A;  3LK2 A;  3JTY A;  1GFQ A;  2KDY A;  3T24 A;  4FSP A;  2Y0K A;  3LK3 B;  2XE2 A;  3VE1 A;  5DL5 A;  2W81 C;  4RLC A;  2LHF A;  2K0L A;  4JCH A;  5JDP A;  4O4X A;  2KXP B;  1PRN A;  1P4T A;  3HWB A;  3LK3 A;  4AKM A;  4FUV A;  1H6S 1;  3GP6 A;  3KVD D;  4D5U A;  2YPV A;  2MNH A;  3HOE A;  3POQ A;  4G76 A;  3QRA A;  5T5F A;  3VE2 A;  2POR A;  3SYS A;  4RL9 A;  4E1T A;  4FRX A;  3SYB A;  3EMN X;  1IZN A;  5AFU L;  2K4T A;  1THQ A;  2M06 A;  4GCP A;  3C5O A;  3SZV A;  3TZG A;  3QRC A;  3PQS A;  2ERV A;  3G7G A;  4AFK A;  4GHB A;  2N2M A;  4FZM A;  1QJP A;  3POR A;  4AUI A;  2XMX A;  1MM4 A;  1GFM A;  3AAA B;  4GCS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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