4KR8A

Salmonella typhi ompf complex with daunomycin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
341
structure length
340
Chain Sequence
MEIYNKGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein F
publication title Salmonella typhi OmpF complex with Daunomycin
rcsb
source organism Salmonella enterica subsp. enterica serovar typhi
total genus 69
structure length 340
sequence length 341
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4kr8A00
3NSGA 4KRAA 3POQA 3HWBA 5DL7A 3UU2A 4D65A 1H6S1 1MPFA 3UPGA 2XE3A 7PRNA 1GFPA 2XE1A 3PRNA 4KR4A 3T0SA 2XG6A 1PRNA 2PORA 3PORA 3SZDA 1OSMA 5PRNA 1HXUA 3A2SX 3EMNX 4GCSA 4JFBA 4GCQA 2K4TA 2FGRA 1HXTA 2ZLDA 1GFMA 4RJWA 3JTYA 1BH3A 4KR8A 5JDPA 3WI5A 1HXXA 4FOZA 3SY9A 2FGQX 2OMFA 4LSFA 3HW9A 4FMSA 4LSHA 1BT9A 3SY7A 4D64A 2O4VA 2J1NA 2Y0LA 2J4UP 4BUMX 3T24A 4FSPA 3O0EA 2ZFGA 5DL6A 4C69X 4FRTA 3SZVA 4AUIA 2ODJA 4FRXA 3VZTX 3SYSA 5DL8A 2XE2A 2QTKA 1OPFA 3POUA 2PRNA 5DL5A 4RJXA 2Y2XA 6PRNA 3FYXA 3WI4A 1GFQA 4FT6A 3VY9X 1GFOA 2Y0HA 4FSOA 3POXA 3VZUX 4LSEA 3VZWX 4GCPA 8PRNA 1PHOA 2XE5A 4D5UA 3T20A 3SYBA 4LSIA 1E54A 1GFNA 3K19A 5FVNA 2Y0KA 3VY8X
chains in the Genus database with same CATH superfamily
3NSGA 3NJTA 2MHLA 2N2LA 4KRAA 3POQA 3HWBA 4O4XA 4AYEC 5DL7A 2KZ7A 3BS0A 1IZNB 5ADXK 2WVPA 3PGRA 5E79O 3DZMA 2LFUA 2JMMA 4K3BA 4FZMA 3UU2A 4D65A 4FZLA 4F4BA 1H6S1 3G7GA 1MPFA 3UPGA 2R89A 2XE3A 4K3CA 7PRNA 2XTRA 3GP6A 5AFUL 2K0LA 1GFPA 2XE1A 3PRNA 4KR4A 5EE2A 2YPVA 2XG6A 1PRNA 3T0SA 2PORA 2WJQA 3LK41 3PORA 4O3XB 1Q9GA 3SZDA 1OSMA 3PQSA 4IL6O 5PRNA 3WU2O 3LK3B 1HXUA 3LK2B 4FUVA 4JCHA 3A2SX 3EMNX 4GCSA 4GCQA 4JFBA 4O3WA 2K4TA 1YS5A 5KAFO 4E1TA 2FGRA 3AAEB 1HXTA 2ZLDA 4AKRB 3AA6A 2M06A 1BXWA 1QJPA 1GFMA 4FZNA 4RJWA 3BRZA 3JTYA 4C4VA 5AFUK 3PF1A 5IYUA 4AZLA 1BH3A 4G76A 3KVDD 4KR8A 5JDPA 1T1LA 3WI5A 3VE1A 5TISO 3TZGA 1G90A 1HXXA 2W80C 2R4PA 2IWWA 4FOZA 3AA7A 4PUXA 3DWOX 3SY9A 2FGQX 1QJ9A 1ZHYA 2OMFA 4LSFA 3HW9A 4FMSA 4LSHA 4QQ1A 1ZHTA 1BT9A 2KZ7B 1Q9FA 3PGUA 2R4NA 2YNKA 3SY7A 3UAQA 3JCUO 2R4OA 4N59A 3A0BO 4D64A 4AFKA 2Y7SA 5G26A 2O4VA 2J1NA 2F1VA 2LHFA 5D5DA 5G38A 2Y0LA 4AYID 5GV0A 2J4UP 3AA1A 4AKMA 5G3AA 5KAIO 2X27X 4AYDC 3T24A 3PGSA 4FSPA 4RL9A 4BUMX 4FESA 2IWVA 1P4TA 3O0EA 2ZFGA 3A0HO 5DL6A 4C69X 2KDYA 2W81C 4FRTA 3AAAA 2R8AA 4PR7A 1S5LO 2ODJA 3SZVA 4AUIA 3PQUA 4U9CA 5GTHO 2KC0A 4FRXA 3VZTX 3SYSA 3QRAA 4CTDA 1ZHWA 4UB8O 4XNLA 3V8UA 5T5FA 2F1TA 3LK42 1ORMA 3HOEA 3AA6B 2KXPA 4FQEA 4C00A 4RLBA 5DL8A 4C4VB 5B66O 3AAAB 3AA0A 2X9KA 2XE2A 4RLCA 2GE4A 5B5EO 4N75A 2ERVA 2QTKA 4XNKA 1OPFA 3POUA 5H2FO 1QJ8A 1IZNA 2PRNA 4O3YA 4O4UA 4UB6O 3AA7B 5DL5A 4N58A 5GTIO 3VE2A 4Z3TA 3AA0B 4AYMC 2N2MA 5G39A 4E1SA 3DA3A 4RJXA 2Y2XA 2R4LA 4AYNA 6PRNA 5ADXL 3FYXA 3WI4A 2AXTO 1T16A 1GFQA 1MM5A 4FT6A 4N74A 3VY9X 1GFOA 2Y0HA 2M07A 4FSOA 3POXA 3QRCA 3RBHA 3AA1B 4G75A 3VZUX 2XMXA 2R88A 3LK3A 3LK2A 3DWNA 4LSEA 3VZWX 4B61A 4GCPA 8PRNA 1MM4A 1PHOA 4O3ZA 2JQYA 3AAEA 2XE5A 4AKRA 1THQA 2F1CX 4D5UA 1ZHZA 1ZHXA 2MNHA 2XTQA 3C5OA 3BRYA 3HOLA 3SYBA 3T20A 4LSIA 4PJ0O 4O49A 4GHBA 4GF4A 1E54A 1GFNA 3DA4A 3K19A 5FVNA 2WJRA 2KXPB 2Y0KA 3KZIO 3VY8X
chains in the Genus database with same CATH topology
3NSGA 2MHLA 2N2LA 4KRAA 3POQA 3HWBA 4O4XA 4AYEC 5DL7A 2KZ7A 1IZNB 5ADXK 2LFUA 2JMMA 3UU2A 4FZMA 4D65A 4FZLA 4F4BA 1H6S1 3G7GA 1MPFA 3UPGA 2XE3A 7PRNA 2XTRA 3GP6A 5AFUL 2K0LA 1GFPA 2XE1A 3PRNA 4KR4A 5EE2A 2YPVA 2XG6A 1PRNA 3T0SA 2PORA 3LK41 3PORA 4O3XB 1Q9GA 3SZDA 1OSMA 3PQSA 5PRNA 3LK3B 1HXUA 3LK2B 4FUVA 4JCHA 3A2SX 3EMNX 4GCSA 4GCQA 4JFBA 4O3WA 2K4TA 1YS5A 4E1TA 2FGRA 3AAEB 1HXTA 2ZLDA 4AKRB 3AA6A 2M06A 1BXWA 1QJPA 1GFMA 4FZNA 4RJWA 5AFUK 3JTYA 5IYUA 4AZLA 1BH3A 4G76A 3KVDD 4KR8A 5JDPA 3WI5A 3VE1A 3TZGA 1G90A 1HXXA 2W80C 4FOZA 3AA7A 4PUXA 3SY9A 4E1SA 2FGQX 1QJ9A 1ZHYA 2OMFA 4LSFA 3HW9A 4FMSA 4LSHA 4QQ1A 1ZHTA 1BT9A 2KZ7B 1Q9FA 3UAQA 2YNKA 3SY7A 4N59A 4D64A 4AFKA 2Y7SA 5G26A 2O4VA 2J1NA 2F1VA 2LHFA 5D5DA 2Y0LA 4AYID 5GV0A 2J4UP 3AA1A 4AKMA 2X27X 4AYDC 3T24A 4FSPA 4BUMX 4RL9A 4FESA 1P4TA 3O0EA 2ZFGA 5DL6A 4C69X 2KDYA 2W81C 4FRTA 3AAAA 3SZVA 4AUIA 2ODJA 3PQUA 4U9CA 2KC0A 4FRXA 3VZTX 3SYSA 3QRAA 1ZHWA 4XNLA 3V8UA 5T5FA 2F1TA 3LK42 1ORMA 3HOEA 3AA6B 2KXPA 4RLBA 5DL8A 3AAAB 3AA0A 2XE2A 4RLCA 2GE4A 2ERVA 2QTKA 4XNKA 1OPFA 3POUA 1QJ8A 1IZNA 2PRNA 4O3YA 4O4UA 5DL5A 3AA7B 4N58A 3VE2A 4Z3TA 3AA0B 4AYMC 2N2MA 3DA3A 4RJXA 2Y2XA 4AYNA 6PRNA 5ADXL 3FYXA 3WI4A 1GFQA 1MM5A 4FT6A 3VY9X 1GFOA 2Y0HA 2M07A 4FSOA 3POXA 3QRCA 3RBHA 3AA1B 4G75A 3VZUX 2XMXA 3LK3A 3LK2A 4LSEA 3VZWX 4B61A 4GCPA 8PRNA 1MM4A 1PHOA 4O3ZA 3AAEA 2XE5A 4AKRA 1THQA 4D5UA 1ZHZA 1ZHXA 2MNHA 2XTQA 3C5OA 3HOLA 3SYBA 3T20A 4LSIA 4O49A 4GHBA 4GF4A 1E54A 1GFNA 3DA4A 3K19A 5FVNA 2KXPB 2Y0KA 3VY8X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NSG A;  4KRA A;  3POQ A;  3HWB A;  5DL7 A;  3UU2 A;  4D65 A;  1H6S 1;  1MPF A;  3UPG A;  2XE3 A;  7PRN A;  1GFP A;  2XE1 A;  3PRN A;  4KR4 A;  3T0S A;  2XG6 A;  1PRN A;  2POR A;  3POR A;  3SZD A;  1OSM A;  5PRN A;  1HXU A;  3A2S X;  3EMN X;  4GCS A;  4JFB A;  4GCQ A;  2K4T A;  2FGR A;  1HXT A;  2ZLD A;  1GFM A;  4RJW A;  3JTY A;  1BH3 A;  4KR8 A;  5JDP A;  3WI5 A;  1HXX A;  4FOZ A;  3SY9 A;  2FGQ X;  2OMF A;  4LSF A;  3HW9 A;  4FMS A;  4LSH A;  1BT9 A;  3SY7 A;  4D64 A;  2O4V A;  2J1N A;  2Y0L A;  2J4U P;  4BUM X;  3T24 A;  4FSP A;  3O0E A;  2ZFG A;  5DL6 A;  4C69 X;  4FRT A;  3SZV A;  4AUI A;  2ODJ A;  4FRX A;  3VZT X;  3SYS A;  5DL8 A;  2XE2 A;  2QTK A;  1OPF A;  3POU A;  2PRN A;  5DL5 A;  4RJX A;  2Y2X A;  6PRN A;  3FYX A;  3WI4 A;  1GFQ A;  4FT6 A;  3VY9 X;  1GFO A;  2Y0H A;  4FSO A;  3POX A;  3VZU X;  4LSE A;  3VZW X;  4GCP A;  8PRN A;  1PHO A;  2XE5 A;  4D5U A;  3T20 A;  3SYB A;  4LSI A;  1E54 A;  1GFN A;  3K19 A;  5FVN A;  2Y0K A;  3VY8 X; 
#chains in the Genus database with same CATH topology
 3NSG A;  3NJT A;  2MHL A;  2N2L A;  4KRA A;  3POQ A;  3HWB A;  4O4X A;  4AYE C;  5DL7 A;  2KZ7 A;  3BS0 A;  1IZN B;  5ADX K;  2WVP A;  3PGR A;  5E79 O;  3DZM A;  2LFU A;  2JMM A;  4K3B A;  4FZM A;  3UU2 A;  4D65 A;  4FZL A;  4F4B A;  1H6S 1;  3G7G A;  1MPF A;  3UPG A;  2R89 A;  2XE3 A;  4K3C A;  7PRN A;  2XTR A;  3GP6 A;  5AFU L;  2K0L A;  1GFP A;  2XE1 A;  3PRN A;  4KR4 A;  5EE2 A;  2YPV A;  2XG6 A;  1PRN A;  3T0S A;  2POR A;  2WJQ A;  3LK4 1;  3POR A;  4O3X B;  1Q9G A;  3SZD A;  1OSM A;  3PQS A;  4IL6 O;  5PRN A;  3WU2 O;  3LK3 B;  1HXU A;  3LK2 B;  4FUV A;  4JCH A;  3A2S X;  3EMN X;  4GCS A;  4GCQ A;  4JFB A;  4O3W A;  2K4T A;  1YS5 A;  5KAF O;  4E1T A;  2FGR A;  3AAE B;  1HXT A;  2ZLD A;  4AKR B;  3AA6 A;  2M06 A;  1BXW A;  1QJP A;  1GFM A;  4FZN A;  4RJW A;  3BRZ A;  3JTY A;  4C4V A;  5AFU K;  3PF1 A;  5IYU A;  4AZL A;  1BH3 A;  4G76 A;  3KVD D;  4KR8 A;  5JDP A;  1T1L A;  3WI5 A;  3VE1 A;  5TIS O;  3TZG A;  1G90 A;  1HXX A;  2W80 C;  2R4P A;  2IWW A;  4FOZ A;  3AA7 A;  4PUX A;  3DWO X;  3SY9 A;  2FGQ X;  1QJ9 A;  1ZHY A;  2OMF A;  4LSF A;  3HW9 A;  4FMS A;  4LSH A;  4QQ1 A;  1ZHT A;  1BT9 A;  2KZ7 B;  1Q9F A;  3PGU A;  2R4N A;  2YNK A;  3SY7 A;  3UAQ A;  3JCU O;  2R4O A;  4N59 A;  3A0B O;  4D64 A;  4AFK A;  2Y7S A;  5G26 A;  2O4V A;  2J1N A;  2F1V A;  2LHF A;  5D5D A;  5G38 A;  2Y0L A;  4AYI D;  5GV0 A;  2J4U P;  3AA1 A;  4AKM A;  5G3A A;  5KAI O;  2X27 X;  4AYD C;  3T24 A;  3PGS A;  4FSP A;  4RL9 A;  4BUM X;  4FES A;  2IWV A;  1P4T A;  3O0E A;  2ZFG A;  3A0H O;  5DL6 A;  4C69 X;  2KDY A;  2W81 C;  4FRT A;  3AAA A;  2R8A A;  4PR7 A;  1S5L O;  2ODJ A;  3SZV A;  4AUI A;  3PQU A;  4U9C A;  5GTH O;  2KC0 A;  4FRX A;  3VZT X;  3SYS A;  3QRA A;  4CTD A;  1ZHW A;  4UB8 O;  4XNL A;  3V8U A;  5T5F A;  2F1T A;  3LK4 2;  1ORM A;  3HOE A;  3AA6 B;  2KXP A;  4FQE A;  4C00 A;  4RLB A;  5DL8 A;  4C4V B;  5B66 O;  3AAA B;  3AA0 A;  2X9K A;  2XE2 A;  4RLC A;  2GE4 A;  5B5E O;  4N75 A;  2ERV A;  2QTK A;  4XNK A;  1OPF A;  3POU A;  5H2F O;  1QJ8 A;  1IZN A;  2PRN A;  4O3Y A;  4O4U A;  4UB6 O;  3AA7 B;  5DL5 A;  4N58 A;  5GTI O;  3VE2 A;  4Z3T A;  3AA0 B;  4AYM C;  2N2M A;  5G39 A;  4E1S A;  3DA3 A;  4RJX A;  2Y2X A;  2R4L A;  4AYN A;  6PRN A;  5ADX L;  3FYX A;  3WI4 A;  2AXT O;  1T16 A;  1GFQ A;  1MM5 A;  4FT6 A;  4N74 A;  3VY9 X;  1GFO A;  2Y0H A;  2M07 A;  4FSO A;  3POX A;  3QRC A;  3RBH A;  3AA1 B;  4G75 A;  3VZU X;  2XMX A;  2R88 A;  3LK3 A;  3LK2 A;  3DWN A;  4LSE A;  3VZW X;  4B61 A;  4GCP A;  8PRN A;  1MM4 A;  1PHO A;  4O3Z A;  2JQY A;  3AAE A;  2XE5 A;  4AKR A;  1THQ A;  2F1C X;  4D5U A;  1ZHZ A;  1ZHX A;  2MNH A;  2XTQ A;  3C5O A;  3BRY A;  3HOL A;  3SYB A;  3T20 A;  4LSI A;  4PJ0 O;  4O49 A;  4GHB A;  4GF4 A;  1E54 A;  1GFN A;  3DA4 A;  3K19 A;  5FVN A;  2WJR A;  2KXP B;  2Y0K A;  3KZI O;  3VY8 X; 
#chains in the Genus database with same CATH homology
 3NSG A;  2MHL A;  2N2L A;  4KRA A;  3POQ A;  3HWB A;  4O4X A;  4AYE C;  5DL7 A;  2KZ7 A;  1IZN B;  5ADX K;  2LFU A;  2JMM A;  3UU2 A;  4FZM A;  4D65 A;  4FZL A;  4F4B A;  1H6S 1;  3G7G A;  1MPF A;  3UPG A;  2XE3 A;  7PRN A;  2XTR A;  3GP6 A;  5AFU L;  2K0L A;  1GFP A;  2XE1 A;  3PRN A;  4KR4 A;  5EE2 A;  2YPV A;  2XG6 A;  1PRN A;  3T0S A;  2POR A;  3LK4 1;  3POR A;  4O3X B;  1Q9G A;  3SZD A;  1OSM A;  3PQS A;  5PRN A;  3LK3 B;  1HXU A;  3LK2 B;  4FUV A;  4JCH A;  3A2S X;  3EMN X;  4GCS A;  4GCQ A;  4JFB A;  4O3W A;  2K4T A;  1YS5 A;  4E1T A;  2FGR A;  3AAE B;  1HXT A;  2ZLD A;  4AKR B;  3AA6 A;  2M06 A;  1BXW A;  1QJP A;  1GFM A;  4FZN A;  4RJW A;  5AFU K;  3JTY A;  5IYU A;  4AZL A;  1BH3 A;  4G76 A;  3KVD D;  4KR8 A;  5JDP A;  3WI5 A;  3VE1 A;  3TZG A;  1G90 A;  1HXX A;  2W80 C;  4FOZ A;  3AA7 A;  4PUX A;  3SY9 A;  4E1S A;  2FGQ X;  1QJ9 A;  1ZHY A;  2OMF A;  4LSF A;  3HW9 A;  4FMS A;  4LSH A;  4QQ1 A;  1ZHT A;  1BT9 A;  2KZ7 B;  1Q9F A;  3UAQ A;  2YNK A;  3SY7 A;  4N59 A;  4D64 A;  4AFK A;  2Y7S A;  5G26 A;  2O4V A;  2J1N A;  2F1V A;  2LHF A;  5D5D A;  2Y0L A;  4AYI D;  5GV0 A;  2J4U P;  3AA1 A;  4AKM A;  2X27 X;  4AYD C;  3T24 A;  4FSP A;  4BUM X;  4RL9 A;  4FES A;  1P4T A;  3O0E A;  2ZFG A;  5DL6 A;  4C69 X;  2KDY A;  2W81 C;  4FRT A;  3AAA A;  3SZV A;  4AUI A;  2ODJ A;  3PQU A;  4U9C A;  2KC0 A;  4FRX A;  3VZT X;  3SYS A;  3QRA A;  1ZHW A;  4XNL A;  3V8U A;  5T5F A;  2F1T A;  3LK4 2;  1ORM A;  3HOE A;  3AA6 B;  2KXP A;  4RLB A;  5DL8 A;  3AAA B;  3AA0 A;  2XE2 A;  4RLC A;  2GE4 A;  2ERV A;  2QTK A;  4XNK A;  1OPF A;  3POU A;  1QJ8 A;  1IZN A;  2PRN A;  4O3Y A;  4O4U A;  5DL5 A;  3AA7 B;  4N58 A;  3VE2 A;  4Z3T A;  3AA0 B;  4AYM C;  2N2M A;  3DA3 A;  4RJX A;  2Y2X A;  4AYN A;  6PRN A;  5ADX L;  3FYX A;  3WI4 A;  1GFQ A;  1MM5 A;  4FT6 A;  3VY9 X;  1GFO A;  2Y0H A;  2M07 A;  4FSO A;  3POX A;  3QRC A;  3RBH A;  3AA1 B;  4G75 A;  3VZU X;  2XMX A;  3LK3 A;  3LK2 A;  4LSE A;  3VZW X;  4B61 A;  4GCP A;  8PRN A;  1MM4 A;  1PHO A;  4O3Z A;  3AAE A;  2XE5 A;  4AKR A;  1THQ A;  4D5U A;  1ZHZ A;  1ZHX A;  2MNH A;  2XTQ A;  3C5O A;  3HOL A;  3SYB A;  3T20 A;  4LSI A;  4O49 A;  4GHB A;  4GF4 A;  1E54 A;  1GFN A;  3DA4 A;  3K19 A;  5FVN A;  2KXP B;  2Y0K A;  3VY8 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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