3A0HO

Crystal structure of i-substituted photosystem ii complex
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
242
structure length
242
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography
pubmed doi rcsb
molecule tags Electron transport
molecule keywords Photosystem Q(B) protein
total genus 28
structure length 242
sequence length 242
chains with identical sequence o
ec nomenclature
pdb deposition date 2009-03-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 3a0hO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 3a0hO02
5B5EO 1S5LO 3A0BO 4IL6O 5GTIO 3A0HO 5G3AA 4UB6O 4UB8O 4PJ0O 5GTHO 5H2FO 5TISO 3JCUO 5G38A 5E79O 5G39A 5B66O 3WU2O 2AXTO 5KAIO 3KZIO 5KAFO
chains in the Genus database with same CATH superfamily
4O3YA 3VY8X 3VY9X 2WVPA 3LK2A 5B5EO 2R8AA 4GCSA 3FYXA 2J1NA 4RJXA 4XNKA 3A0BO 4LSIA 2YPVA 2XTRA 2XG6A 4FQEA 4FMSA 4O4UA 3AA0B 5FVNA 4FOZA 3SYBA 4AFKA 3A2SX 1IZNA 3DA3A 3VE2A 4O3WA 4C69X 4CTDA 2W80C 3AA7A 3HW9A 2XMXA 1HXUA 3LK2B 4GF4A 2R4LA 4UB8O 3SZDA 3T24A 4GCQA 3O0EA 3HOEA 6PRNA 5H2FO 2W81C 3DWOX 5TISO 4FSOA 5DL5A 5G39A 4GHBA 4O3ZA 1IZNB 2J4UP 2YNKA 3AA7B 1MM5A 1T16A 4N75A 3AA1A 4QQ1A 4D5UA 1Q9GA 3QRAA 8PRNA 3UU2A 4F4BA 2PORA 2KDYA 2IWWA 4G75A 2WJRA 3DWNA 4AYDC 2LHFA 2Y7SA 5JDPA 3AA1B 5DL6A 3UAQA 2X27X 3AA6A 1MM4A 5ADXK 2QTKA 3POXA 4FT6A 3T20A 4RLBA 2JMMA 2R4OA 2XE1A 3PGSA 1PRNA 2Y0KA 3VE1A 2N2MA 3G7GA 1ORMA 5ADXL 3PRNA 3POQA 1BXWA 2R88A 1HXTA 1ZHWA 4BUMX 2GE4A 3AA6B 2F1VA 2ERVA 4K3CA 4LSHA 2MHLA 3GP6A 3JTYA 4JFBA 4N74A 5E79O 5G38A 3VZWX 1GFPA 1Q9FA 4K3BA 1HXXA 3QRCA 4O49A 3UPGA 2FGRA 4FRTA 2OMFA 3RBHA 3T0SA 1ZHTA 4D65A 1E54A 3PQSA 5AFUK 3SY7A 3WU2O 4Z3TA 1GFQA 2KZ7A 3HOLA 5KAFO 4AYNA 2Y0LA 4G76A 2IWVA 4N59A 3AAAA 2O4VA 4RJWA 5G26A 2ODJA 1S5LO 5DL8A 3AAEA 3TZGA 2R4PA 2KXPA 2R4NA 4JCHA 4LSFA 4C00A 1G90A 2KZ7B 3K19A 5GTIO 4C4VA 1BT9A 4AYMC 4UB6O 3AAAB 4FUVA 4GCPA 4AYEC 4PJ0O 2R89A 2X9KA 2M06A 3AAEB 4RLCA 5GTHO 2Y2XA 1THQA 2KXPB 3JCUO 5B66O 2F1TA 4AKMA 4C4VB 3PQUA 1T1LA 1GFOA 2JQYA 2PRNA 2XE5A 3SYSA 4FZMA 1PHOA 1YS5A 1GFNA 5D5DA 2XE2A 2XE3A 3KZIO 4AUIA 3PGRA 4D64A 1MPFA 2Y0HA 3KVDD 2M07A 3PGUA 2ZLDA 2F1CX 3DZMA 4KR4A 4FRXA 1ZHYA 4LSEA 2K4TA 1QJPA 4IL6O 4AYID 3EMNX 3DA4A 4KRAA 3C5OA 3LK3A 4E1TA 3WI5A 3A0HO 5GV0A 5G3AA 4XNLA 4AKRA 3NJTA 4O3XB 3PORA 4PR7A 2WJQA 4RL9A 1H6S1 3LK41 4AZLA 2N2LA 4E1SA 4FZLA 5IYUA 2MNHA 3BRZA 3VZTX 3NSGA 4B61A 1QJ9A 2K0LA 3HWBA 4FESA 3VZUX 5AFUL 4FZNA 1OPFA 1ZHZA 3LK3B 2XTQA 4N58A 5PRNA 1P4TA 1ZHXA 2ZFGA 4KR8A 1BH3A 2KC0A 3LK42 3BS0A 4FSPA 3SZVA 4PUXA 4AKRB 7PRNA 2LFUA 1OSMA 5EE2A 3POUA 5T5FA 1QJ8A 3PF1A 4O4XA 2AXTO 3AA0A 5KAIO 3V8UA 4U9CA 1GFMA 3WI4A 3BRYA 5DL7A 3SY9A 2FGQX
chains in the Genus database with same CATH topology
5B5EO 1S5LO 3A0BO 4IL6O 5GTIO 3A0HO 5G3AA 4UB6O 4UB8O 4PJ0O 5GTHO 5H2FO 5TISO 3JCUO 5G38A 5E79O 5G39A 5B66O 3WU2O 2AXTO 5KAIO 3KZIO 5KAFO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B5E O;  1S5L O;  3A0B O;  4IL6 O;  5GTI O;  3A0H O;  5G3A A;  4UB6 O;  4UB8 O;  4PJ0 O;  5GTH O;  5H2F O;  5TIS O;  3JCU O;  5G38 A;  5E79 O;  5G39 A;  5B66 O;  3WU2 O;  2AXT O;  5KAI O;  3KZI O;  5KAF O; 
#chains in the Genus database with same CATH topology
 4O3Y A;  3VY8 X;  3VY9 X;  2WVP A;  3LK2 A;  5B5E O;  2R8A A;  4GCS A;  3FYX A;  2J1N A;  4RJX A;  4XNK A;  3A0B O;  4LSI A;  2YPV A;  2XTR A;  2XG6 A;  4FQE A;  4FMS A;  4O4U A;  3AA0 B;  5FVN A;  4FOZ A;  3SYB A;  4AFK A;  3A2S X;  1IZN A;  3DA3 A;  3VE2 A;  4O3W A;  4C69 X;  4CTD A;  2W80 C;  3AA7 A;  3HW9 A;  2XMX A;  1HXU A;  3LK2 B;  4GF4 A;  2R4L A;  4UB8 O;  3SZD A;  3T24 A;  4GCQ A;  3O0E A;  3HOE A;  6PRN A;  5H2F O;  2W81 C;  3DWO X;  5TIS O;  4FSO A;  5DL5 A;  5G39 A;  4GHB A;  4O3Z A;  1IZN B;  2J4U P;  2YNK A;  3AA7 B;  1MM5 A;  1T16 A;  4N75 A;  3AA1 A;  4QQ1 A;  4D5U A;  1Q9G A;  3QRA A;  8PRN A;  3UU2 A;  4F4B A;  2POR A;  2KDY A;  2IWW A;  4G75 A;  2WJR A;  3DWN A;  4AYD C;  2LHF A;  2Y7S A;  5JDP A;  3AA1 B;  5DL6 A;  3UAQ A;  2X27 X;  3AA6 A;  1MM4 A;  5ADX K;  2QTK A;  3POX A;  4FT6 A;  3T20 A;  4RLB A;  2JMM A;  2R4O A;  2XE1 A;  3PGS A;  1PRN A;  2Y0K A;  3VE1 A;  2N2M A;  3G7G A;  1ORM A;  5ADX L;  3PRN A;  3POQ A;  1BXW A;  2R88 A;  1HXT A;  1ZHW A;  4BUM X;  2GE4 A;  3AA6 B;  2F1V A;  2ERV A;  4K3C A;  4LSH A;  2MHL A;  3GP6 A;  3JTY A;  4JFB A;  4N74 A;  5E79 O;  5G38 A;  3VZW X;  1GFP A;  1Q9F A;  4K3B A;  1HXX A;  3QRC A;  4O49 A;  3UPG A;  2FGR A;  4FRT A;  2OMF A;  3RBH A;  3T0S A;  1ZHT A;  4D65 A;  1E54 A;  3PQS A;  5AFU K;  3SY7 A;  3WU2 O;  4Z3T A;  1GFQ A;  2KZ7 A;  3HOL A;  5KAF O;  4AYN A;  2Y0L A;  4G76 A;  2IWV A;  4N59 A;  3AAA A;  2O4V A;  4RJW A;  5G26 A;  2ODJ A;  1S5L O;  5DL8 A;  3AAE A;  3TZG A;  2R4P A;  2KXP A;  2R4N A;  4JCH A;  4LSF A;  4C00 A;  1G90 A;  2KZ7 B;  3K19 A;  5GTI O;  4C4V A;  1BT9 A;  4AYM C;  4UB6 O;  3AAA B;  4FUV A;  4GCP A;  4AYE C;  4PJ0 O;  2R89 A;  2X9K A;  2M06 A;  3AAE B;  4RLC A;  5GTH O;  2Y2X A;  1THQ A;  2KXP B;  3JCU O;  5B66 O;  2F1T A;  4AKM A;  4C4V B;  3PQU A;  1T1L A;  1GFO A;  2JQY A;  2PRN A;  2XE5 A;  3SYS A;  4FZM A;  1PHO A;  1YS5 A;  1GFN A;  5D5D A;  2XE2 A;  2XE3 A;  3KZI O;  4AUI A;  3PGR A;  4D64 A;  1MPF A;  2Y0H A;  3KVD D;  2M07 A;  3PGU A;  2ZLD A;  2F1C X;  3DZM A;  4KR4 A;  4FRX A;  1ZHY A;  4LSE A;  2K4T A;  1QJP A;  4IL6 O;  4AYI D;  3EMN X;  3DA4 A;  4KRA A;  3C5O A;  3LK3 A;  4E1T A;  3WI5 A;  3A0H O;  5GV0 A;  5G3A A;  4XNL A;  4AKR A;  3NJT A;  4O3X B;  3POR A;  4PR7 A;  2WJQ A;  4RL9 A;  1H6S 1;  3LK4 1;  4AZL A;  2N2L A;  4E1S A;  4FZL A;  5IYU A;  2MNH A;  3BRZ A;  3VZT X;  3NSG A;  4B61 A;  1QJ9 A;  2K0L A;  3HWB A;  4FES A;  3VZU X;  5AFU L;  4FZN A;  1OPF A;  1ZHZ A;  3LK3 B;  2XTQ A;  4N58 A;  5PRN A;  1P4T A;  1ZHX A;  2ZFG A;  4KR8 A;  1BH3 A;  2KC0 A;  3LK4 2;  3BS0 A;  4FSP A;  3SZV A;  4PUX A;  4AKR B;  7PRN A;  2LFU A;  1OSM A;  5EE2 A;  3POU A;  5T5F A;  1QJ8 A;  3PF1 A;  4O4X A;  2AXT O;  3AA0 A;  5KAI O;  3V8U A;  4U9C A;  1GFM A;  3WI4 A;  3BRY A;  5DL7 A;  3SY9 A;  2FGQ X; 
#chains in the Genus database with same CATH homology
 5B5E O;  1S5L O;  3A0B O;  4IL6 O;  5GTI O;  3A0H O;  5G3A A;  4UB6 O;  4UB8 O;  4PJ0 O;  5GTH O;  5H2F O;  5TIS O;  3JCU O;  5G38 A;  5E79 O;  5G39 A;  5B66 O;  3WU2 O;  2AXT O;  5KAI O;  3KZI O;  5KAF O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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