2J4UP

E.coli ompc - camel lactoferrin complex
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
346
structure length
337
Chain Sequence
AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein/hydrolase
molecule keywords OUTER MEMBRANE PROTEIN C PRECURSOR
publication title Crystal Structure of the Membrane Protein Ompc Complex with Antibacterial Lactoferrin
rcsb
total genus 70
structure length 337
sequence length 346
chains with identical sequence Q, R, U, V, W
ec nomenclature
pdb deposition date 2006-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2j4uP00
4GCSA 1BT9A 2XE3A 5FVNA 3PRNA 4BUMX 4JFBA 3SYSA 1GFMA 3A2SX 3POXA 3VY9X 2FGRA 1PHOA 4AUIA 2XE2A 4FRXA 3UPGA 3SY9A 2FGQX 2Y2XA 4FSPA 1GFOA 4FSOA 1HXTA 4LSIA 1BH3A 3WI5A 3POUA 1OSMA 4KR4A 2PORA 3HW9A 2O4VA 6PRNA 2PRNA 3SY7A 3T20A 4RJWA 5DL8A 4D64A 1H6S1 4D5UA 8PRNA 7PRNA 5DL5A 2J1NA 2OMFA 4LSEA 1HXUA 5PRNA 4GCQA 2K4TA 3VZTX 3POQA 4FMSA 3K19A 4GCPA 1OPFA 1GFNA 3NSGA 4FOZA 3VZWX 2XE1A 3EMNX 3WI4A 4C69X 4LSHA 4FT6A 2J4UP 3T24A 4KRAA 3PORA 2QTKA 3O0EA 2ZLDA 2XG6A 3HWBA 1MPFA 3SZVA 4D65A 3UU2A 5DL7A 1E54A 4LSFA 2Y0KA 3FYXA 1PRNA 4FRTA 3VZUX 4KR8A 4RJXA 1GFPA 2Y0HA 1GFQA 5DL6A 2ODJA 3JTYA 3SYBA 3SZDA 2XE5A 2ZFGA 5JDPA 3T0SA 1HXXA 3VY8X 2Y0LA
chains in the Genus database with same CATH superfamily
3AA0A 1QJPA 4IL6O 2F1TA 4AZLA 2R4NA 2WJQA 3DWNA 1BT9A 2XE3A 3HOEA 4GCSA 4UB8O 5AFUK 4XNLA 1IZNA 5FVNA 3RBHA 3PRNA 4BUMX 4JFBA 3SYSA 1GFMA 3A2SX 1T16A 2M07A 3POXA 5EE2A 3VY9X 4AYEC 5AFUL 2FGRA 1PHOA 3LK41 3VE2A 4AUIA 2XE2A 2KZ7A 2LFUA 4JCHA 1ZHTA 3BS0A 2WJRA 4O4XA 5GTIO 4GHBA 4FRXA 4F4BA 2KXPA 3UPGA 3SY9A 2FGQX 2Y2XA 4AYNA 3QRAA 1MM4A 4FSPA 3AA7A 1GFOA 4FSOA 4FQEA 2R4OA 1HXTA 4AYDC 4LSIA 1BH3A 1Q9FA 3DWOX 4RLBA 1MM5A 1OSMA 3POUA 3WI5A 4KR4A 2PORA 3HW9A 4O3ZA 4O3XB 4B61A 2O4VA 1QJ9A 6PRNA 2KXPB 2R4LA 1ZHYA 2F1VA 2WVPA 2PRNA 3AA7B 1ZHZA 2AXTO 3AA6A 4FZLA 5E79O 3SY7A 3T20A 4RJWA 2ERVA 5DL8A 1BXWA 2W81C 4O3WA 1ZHXA 2XMXA 2MNHA 4QQ1A 4D64A 5KAFO 1H6S1 3DA3A 4UB6O 4D5UA 1P4TA 8PRNA 7PRNA 5DL5A 3VE1A 1QJ8A 2J1NA 2OMFA 4LSEA 4O4UA 1Q9GA 3AA6B 5G39A 4FZMA 1HXUA 4AYMC 4AYID 5PRNA 5T5FA 4GCQA 5ADXK 4K3CA 4PUXA 3A0HO 2K4TA 3VZTX 4C00A 4RLCA 3POQA 4FMSA 4PJ0O 3K19A 3PQSA 4GCPA 4Z3TA 1OPFA 1GFNA 3DA4A 3AAAB 3NSGA 2M06A 4O3YA 2IWWA 3LK2B 2YNKA 4FOZA 3VZWX 2XE1A 3BRYA 2F1CX 3EMNX 3PGSA 3WI4A 4AKMA 5B66O 5ADXL 2K0LA 3AAEB 4C69X 2KC0A 3DZMA 5GTHO 1G90A 4LSHA 2YPVA 1S5LO 4FT6A 2J4UP 3PGUA 1T1LA 3T24A 4C4VB 1ORMA 4XNKA 4KRAA 3WU2O 2X9KA 3LK3B 3PGRA 3PORA 2QTKA 2N2LA 2ZLDA 3O0EA 2N2MA 3C5OA 2XG6A 3AAAA 4AKRB 2W80C 3HWBA 1MPFA 3LK2A 3SZVA 3HOLA 3KVDD 5KAIO 4D65A 2JMMA 4FESA 2R89A 4FZNA 5D5DA 4GF4A 5G26A 2JQYA 3AAEA 3LK42 5DL7A 4U9CA 2MHLA 3G7GA 3UU2A 4N74A 2XTQA 4RL9A 1ZHWA 4C4VA 1E54A 2X27X 2LHFA 3AA1A 3QRCA 3A0BO 3LK3A 4LSFA 3PQUA 4N58A 2Y0KA 3FYXA 2R88A 4E1SA 1PRNA 4FRTA 4AKRA 5GV0A 5H2FO 4AFKA 2GE4A 3GP6A 4O49A 3KZIO 3AA0B 3VZUX 2R4PA 4KR8A 5IYUA 4RJXA 2Y7SA 3PF1A 2KDYA 1GFPA 2IWVA 2Y0HA 1GFQA 1IZNB 1THQA 3AA1B 4G76A 4K3BA 5DL6A 3TZGA 3V8UA 2ODJA 3BRZA 1YS5A 3JTYA 5TISO 3UAQA 3SYBA 3NJTA 3SZDA 5B5EO 2XE5A 4PR7A 4E1TA 4G75A 2XTRA 2ZFGA 3JCUO 4CTDA 4N59A 4FUVA 5JDPA 5G38A 5G3AA 3T0SA 1HXXA 2KZ7B 2R8AA 4N75A 2Y0LA 3VY8X
chains in the Genus database with same CATH topology
3AA0A 1QJPA 2F1TA 4AZLA 5AFUK 4GCSA 1BT9A 2XE3A 3HOEA 4XNLA 1IZNA 5FVNA 3RBHA 3PRNA 4BUMX 4JFBA 3SYSA 1GFMA 3A2SX 2M07A 3POXA 5EE2A 3VY9X 4AYEC 5AFUL 2FGRA 1PHOA 3LK41 3VE2A 4AUIA 2XE2A 2KZ7A 2LFUA 4JCHA 1ZHTA 4O4XA 4GHBA 4FRXA 4F4BA 2KXPA 3UPGA 3SY9A 2FGQX 2Y2XA 4AYNA 3QRAA 1MM4A 4FSPA 3AA7A 1GFOA 4FSOA 1HXTA 4AYDC 4LSIA 1BH3A 1Q9FA 4RLBA 3WI5A 1MM5A 1OSMA 3POUA 4KR4A 2PORA 3HW9A 4O3ZA 4O3XB 4B61A 2O4VA 1QJ9A 6PRNA 2KXPB 1ZHYA 2F1VA 2PRNA 3AA7B 1ZHZA 3AA6A 4FZLA 3SY7A 3T20A 4RJWA 2ERVA 5DL8A 1BXWA 2W81C 4O3WA 1ZHXA 2XMXA 2MNHA 4QQ1A 4D64A 1H6S1 3DA3A 4D5UA 1P4TA 8PRNA 7PRNA 5DL5A 3VE1A 1QJ8A 2J1NA 2OMFA 4LSEA 4O4UA 1Q9GA 3AA6B 4AYID 4FZMA 1HXUA 4AYMC 5PRNA 5T5FA 4GCQA 5ADXK 4PUXA 2K4TA 3VZTX 4RLCA 3POQA 4FMSA 4Z3TA 3K19A 3PQSA 4GCPA 1OPFA 1GFNA 3DA4A 3AAAB 3NSGA 2M06A 4O3YA 3LK2B 2YNKA 4FOZA 3VZWX 2XE1A 3EMNX 4AKMA 3WI4A 5ADXL 2K0LA 3AAEB 4C69X 2KC0A 1G90A 4LSHA 2YPVA 4FT6A 2J4UP 3T24A 1ORMA 4XNKA 4KRAA 3LK3B 3PORA 2QTKA 2N2LA 2ZLDA 3O0EA 2N2MA 3C5OA 2XG6A 3AAAA 4AKRB 2W80C 3HWBA 1MPFA 3LK2A 3SZVA 3HOLA 3KVDD 4D65A 2JMMA 4FESA 5G26A 4FZNA 5D5DA 4GF4A 3LK42 3AAEA 3UU2A 5DL7A 4U9CA 2MHLA 3G7GA 2XTQA 4RL9A 1ZHWA 1E54A 2X27X 2LHFA 3AA1A 3QRCA 4LSFA 3LK3A 4N58A 3PQUA 2Y0KA 3FYXA 4E1SA 1PRNA 4FRTA 4AKRA 5GV0A 4AFKA 2GE4A 3GP6A 4O49A 3AA0B 3VZUX 4KR8A 5IYUA 4RJXA 2Y7SA 2KDYA 1GFPA 2Y0HA 1GFQA 1IZNB 1THQA 3AA1B 4G76A 5DL6A 3TZGA 3V8UA 2ODJA 1YS5A 3JTYA 3UAQA 3SYBA 3SZDA 2XE5A 4E1TA 4G75A 2XTRA 2ZFGA 5JDPA 4N59A 4FUVA 3T0SA 1HXXA 2KZ7B 3VY8X 2Y0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GCS A;  1BT9 A;  2XE3 A;  5FVN A;  3PRN A;  4BUM X;  4JFB A;  3SYS A;  1GFM A;  3A2S X;  3POX A;  3VY9 X;  2FGR A;  1PHO A;  4AUI A;  2XE2 A;  4FRX A;  3UPG A;  3SY9 A;  2FGQ X;  2Y2X A;  4FSP A;  1GFO A;  4FSO A;  1HXT A;  4LSI A;  1BH3 A;  3WI5 A;  3POU A;  1OSM A;  4KR4 A;  2POR A;  3HW9 A;  2O4V A;  6PRN A;  2PRN A;  3SY7 A;  3T20 A;  4RJW A;  5DL8 A;  4D64 A;  1H6S 1;  4D5U A;  8PRN A;  7PRN A;  5DL5 A;  2J1N A;  2OMF A;  4LSE A;  1HXU A;  5PRN A;  4GCQ A;  2K4T A;  3VZT X;  3POQ A;  4FMS A;  3K19 A;  4GCP A;  1OPF A;  1GFN A;  3NSG A;  4FOZ A;  3VZW X;  2XE1 A;  3EMN X;  3WI4 A;  4C69 X;  4LSH A;  4FT6 A;  2J4U P;  3T24 A;  4KRA A;  3POR A;  2QTK A;  3O0E A;  2ZLD A;  2XG6 A;  3HWB A;  1MPF A;  3SZV A;  4D65 A;  3UU2 A;  5DL7 A;  1E54 A;  4LSF A;  2Y0K A;  3FYX A;  1PRN A;  4FRT A;  3VZU X;  4KR8 A;  4RJX A;  1GFP A;  2Y0H A;  1GFQ A;  5DL6 A;  2ODJ A;  3JTY A;  3SYB A;  3SZD A;  2XE5 A;  2ZFG A;  5JDP A;  3T0S A;  1HXX A;  3VY8 X;  2Y0L A; 
#chains in the Genus database with same CATH topology
 3AA0 A;  1QJP A;  4IL6 O;  2F1T A;  4AZL A;  2R4N A;  2WJQ A;  3DWN A;  1BT9 A;  2XE3 A;  3HOE A;  4GCS A;  4UB8 O;  5AFU K;  4XNL A;  1IZN A;  5FVN A;  3RBH A;  3PRN A;  4BUM X;  4JFB A;  3SYS A;  1GFM A;  3A2S X;  1T16 A;  2M07 A;  3POX A;  5EE2 A;  3VY9 X;  4AYE C;  5AFU L;  2FGR A;  1PHO A;  3LK4 1;  3VE2 A;  4AUI A;  2XE2 A;  2KZ7 A;  2LFU A;  4JCH A;  1ZHT A;  3BS0 A;  2WJR A;  4O4X A;  5GTI O;  4GHB A;  4FRX A;  4F4B A;  2KXP A;  3UPG A;  3SY9 A;  2FGQ X;  2Y2X A;  4AYN A;  3QRA A;  1MM4 A;  4FSP A;  3AA7 A;  1GFO A;  4FSO A;  4FQE A;  2R4O A;  1HXT A;  4AYD C;  4LSI A;  1BH3 A;  1Q9F A;  3DWO X;  4RLB A;  1MM5 A;  1OSM A;  3POU A;  3WI5 A;  4KR4 A;  2POR A;  3HW9 A;  4O3Z A;  4O3X B;  4B61 A;  2O4V A;  1QJ9 A;  6PRN A;  2KXP B;  2R4L A;  1ZHY A;  2F1V A;  2WVP A;  2PRN A;  3AA7 B;  1ZHZ A;  2AXT O;  3AA6 A;  4FZL A;  5E79 O;  3SY7 A;  3T20 A;  4RJW A;  2ERV A;  5DL8 A;  1BXW A;  2W81 C;  4O3W A;  1ZHX A;  2XMX A;  2MNH A;  4QQ1 A;  4D64 A;  5KAF O;  1H6S 1;  3DA3 A;  4UB6 O;  4D5U A;  1P4T A;  8PRN A;  7PRN A;  5DL5 A;  3VE1 A;  1QJ8 A;  2J1N A;  2OMF A;  4LSE A;  4O4U A;  1Q9G A;  3AA6 B;  5G39 A;  4FZM A;  1HXU A;  4AYM C;  4AYI D;  5PRN A;  5T5F A;  4GCQ A;  5ADX K;  4K3C A;  4PUX A;  3A0H O;  2K4T A;  3VZT X;  4C00 A;  4RLC A;  3POQ A;  4FMS A;  4PJ0 O;  3K19 A;  3PQS A;  4GCP A;  4Z3T A;  1OPF A;  1GFN A;  3DA4 A;  3AAA B;  3NSG A;  2M06 A;  4O3Y A;  2IWW A;  3LK2 B;  2YNK A;  4FOZ A;  3VZW X;  2XE1 A;  3BRY A;  2F1C X;  3EMN X;  3PGS A;  3WI4 A;  4AKM A;  5B66 O;  5ADX L;  2K0L A;  3AAE B;  4C69 X;  2KC0 A;  3DZM A;  5GTH O;  1G90 A;  4LSH A;  2YPV A;  1S5L O;  4FT6 A;  2J4U P;  3PGU A;  1T1L A;  3T24 A;  4C4V B;  1ORM A;  4XNK A;  4KRA A;  3WU2 O;  2X9K A;  3LK3 B;  3PGR A;  3POR A;  2QTK A;  2N2L A;  2ZLD A;  3O0E A;  2N2M A;  3C5O A;  2XG6 A;  3AAA A;  4AKR B;  2W80 C;  3HWB A;  1MPF A;  3LK2 A;  3SZV A;  3HOL A;  3KVD D;  5KAI O;  4D65 A;  2JMM A;  4FES A;  2R89 A;  4FZN A;  5D5D A;  4GF4 A;  5G26 A;  2JQY A;  3AAE A;  3LK4 2;  5DL7 A;  4U9C A;  2MHL A;  3G7G A;  3UU2 A;  4N74 A;  2XTQ A;  4RL9 A;  1ZHW A;  4C4V A;  1E54 A;  2X27 X;  2LHF A;  3AA1 A;  3QRC A;  3A0B O;  3LK3 A;  4LSF A;  3PQU A;  4N58 A;  2Y0K A;  3FYX A;  2R88 A;  4E1S A;  1PRN A;  4FRT A;  4AKR A;  5GV0 A;  5H2F O;  4AFK A;  2GE4 A;  3GP6 A;  4O49 A;  3KZI O;  3AA0 B;  3VZU X;  2R4P A;  4KR8 A;  5IYU A;  4RJX A;  2Y7S A;  3PF1 A;  2KDY A;  1GFP A;  2IWV A;  2Y0H A;  1GFQ A;  1IZN B;  1THQ A;  3AA1 B;  4G76 A;  4K3B A;  5DL6 A;  3TZG A;  3V8U A;  2ODJ A;  3BRZ A;  1YS5 A;  3JTY A;  5TIS O;  3UAQ A;  3SYB A;  3NJT A;  3SZD A;  5B5E O;  2XE5 A;  4PR7 A;  4E1T A;  4G75 A;  2XTR A;  2ZFG A;  3JCU O;  4CTD A;  4N59 A;  4FUV A;  5JDP A;  5G38 A;  5G3A A;  3T0S A;  1HXX A;  2KZ7 B;  2R8A A;  4N75 A;  2Y0L A;  3VY8 X; 
#chains in the Genus database with same CATH homology
 3AA0 A;  1QJP A;  2F1T A;  4AZL A;  5AFU K;  4GCS A;  1BT9 A;  2XE3 A;  3HOE A;  4XNL A;  1IZN A;  5FVN A;  3RBH A;  3PRN A;  4BUM X;  4JFB A;  3SYS A;  1GFM A;  3A2S X;  2M07 A;  3POX A;  5EE2 A;  3VY9 X;  4AYE C;  5AFU L;  2FGR A;  1PHO A;  3LK4 1;  3VE2 A;  4AUI A;  2XE2 A;  2KZ7 A;  2LFU A;  4JCH A;  1ZHT A;  4O4X A;  4GHB A;  4FRX A;  4F4B A;  2KXP A;  3UPG A;  3SY9 A;  2FGQ X;  2Y2X A;  4AYN A;  3QRA A;  1MM4 A;  4FSP A;  3AA7 A;  1GFO A;  4FSO A;  1HXT A;  4AYD C;  4LSI A;  1BH3 A;  1Q9F A;  4RLB A;  3WI5 A;  1MM5 A;  1OSM A;  3POU A;  4KR4 A;  2POR A;  3HW9 A;  4O3Z A;  4O3X B;  4B61 A;  2O4V A;  1QJ9 A;  6PRN A;  2KXP B;  1ZHY A;  2F1V A;  2PRN A;  3AA7 B;  1ZHZ A;  3AA6 A;  4FZL A;  3SY7 A;  3T20 A;  4RJW A;  2ERV A;  5DL8 A;  1BXW A;  2W81 C;  4O3W A;  1ZHX A;  2XMX A;  2MNH A;  4QQ1 A;  4D64 A;  1H6S 1;  3DA3 A;  4D5U A;  1P4T A;  8PRN A;  7PRN A;  5DL5 A;  3VE1 A;  1QJ8 A;  2J1N A;  2OMF A;  4LSE A;  4O4U A;  1Q9G A;  3AA6 B;  4AYI D;  4FZM A;  1HXU A;  4AYM C;  5PRN A;  5T5F A;  4GCQ A;  5ADX K;  4PUX A;  2K4T A;  3VZT X;  4RLC A;  3POQ A;  4FMS A;  4Z3T A;  3K19 A;  3PQS A;  4GCP A;  1OPF A;  1GFN A;  3DA4 A;  3AAA B;  3NSG A;  2M06 A;  4O3Y A;  3LK2 B;  2YNK A;  4FOZ A;  3VZW X;  2XE1 A;  3EMN X;  4AKM A;  3WI4 A;  5ADX L;  2K0L A;  3AAE B;  4C69 X;  2KC0 A;  1G90 A;  4LSH A;  2YPV A;  4FT6 A;  2J4U P;  3T24 A;  1ORM A;  4XNK A;  4KRA A;  3LK3 B;  3POR A;  2QTK A;  2N2L A;  2ZLD A;  3O0E A;  2N2M A;  3C5O A;  2XG6 A;  3AAA A;  4AKR B;  2W80 C;  3HWB A;  1MPF A;  3LK2 A;  3SZV A;  3HOL A;  3KVD D;  4D65 A;  2JMM A;  4FES A;  5G26 A;  4FZN A;  5D5D A;  4GF4 A;  3LK4 2;  3AAE A;  3UU2 A;  5DL7 A;  4U9C A;  2MHL A;  3G7G A;  2XTQ A;  4RL9 A;  1ZHW A;  1E54 A;  2X27 X;  2LHF A;  3AA1 A;  3QRC A;  4LSF A;  3LK3 A;  4N58 A;  3PQU A;  2Y0K A;  3FYX A;  4E1S A;  1PRN A;  4FRT A;  4AKR A;  5GV0 A;  4AFK A;  2GE4 A;  3GP6 A;  4O49 A;  3AA0 B;  3VZU X;  4KR8 A;  5IYU A;  4RJX A;  2Y7S A;  2KDY A;  1GFP A;  2Y0H A;  1GFQ A;  1IZN B;  1THQ A;  3AA1 B;  4G76 A;  5DL6 A;  3TZG A;  3V8U A;  2ODJ A;  1YS5 A;  3JTY A;  3UAQ A;  3SYB A;  3SZD A;  2XE5 A;  4E1T A;  4G75 A;  2XTR A;  2ZFG A;  5JDP A;  4N59 A;  4FUV A;  3T0S A;  1HXX A;  2KZ7 B;  3VY8 X;  2Y0L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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