The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
129
|
sequence length |
425
|
structure length |
408
|
Chain Sequence |
AGEQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGRAFNNYGLQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb |
| molecule keywords |
Long-chain fatty acid transport protein
|
| molecule tags |
Lipid transport
|
| source organism |
Escherichia coli k-12
|
| total genus |
129
|
| structure length |
408
|
| sequence length |
425
|
| ec nomenclature | |
| pdb deposition date | 2010-11-02 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Outer membrane protein transport protein (OMPP1/FadL/TodX) |
#chains in the Genus database with same CATH superfamily 3BS0 A; 2R4P A; 3PGR A; 2R4N A; 2R8A A; 2R89 A; 3BRZ A; 3PF1 A; 3BRY A; 3DWN A; 3DWO X; 3PGS A; 2R4L A; 2R88 A; 3PGU A; 1T1L A; 2R4O A; 1T16 A; #chains in the Genus database with same CATH topology 1HXT A; 1Q9G A; 3DA4 A; 2W81 C; 4N74 A; 1MM4 A; 2F1V A; 2LHF A; 2XE5 A; 1GFN A; 5D5D A; 3VZU X; 4GCP A; 1HXU A; 1GFQ A; 4AKR B; 2X9K A; 2R88 A; 3KVD D; 3HWB A; 1Q9F A; 4N58 A; 1ZHX A; 3AA6 B; 3LK3 A; 3QRC A; 4O4U A; 3SYS A; 4FSO A; 2KXP A; 3JCU O; 5FVN A; 4B61 A; 1GFO A; 4C4V A; 4U9C A; 8PRN A; 3V8U A; 4G75 A; 1P4T A; 2JMM A; 3K19 A; 2XMX A; 3VZW X; 4E1S A; 3FYX A; 3PRN A; 3POX A; 4XNK A; 2R89 A; 1ZHZ A; 3GP6 A; 4FZL A; 1MM5 A; 3LK3 B; 3EMN X; 4AYM C; 3AAA A; 1PHO A; 1ZHT A; 2KXP B; 1PRN A; 2R4P A; 2OMF A; 4FSP A; 4IL6 O; 5G38 A; 4FRX A; 4C4V B; 4FZM A; 2WJQ A; 4O49 A; 4UB6 O; 2O4V A; 4AYD C; 4GCS A; 4K3B A; 5GTH O; 4FOZ A; 3AA0 B; 3TZG A; 5KAI O; 4KRA A; 2YNK A; 3VZT X; 3POU A; 4AFK A; 4AYN A; 2ZFG A; 5TIS O; 2POR A; 4LSH A; 2J1N A; 4PUX A; 4C00 A; 4QQ1 A; 3LK4 1; 1QJP A; 4JFB A; 4O4X A; 3PGS A; 4O3Y A; 5G39 A; 5KAF O; 5H2F O; 6PRN A; 1QJ9 A; 3DZM A; 3AA7 A; 5GTI O; 4D5U A; 2ERV A; 1G90 A; 4XNL A; 4LSF A; 2XE3 A; 3A0H O; 5G3A A; 4AZL A; 4UB8 O; 2KC0 A; 4FZN A; 1THQ A; 2IWV A; 4G76 A; 4RLB A; 2Y0L A; 4D65 A; 2ODJ A; 1T16 A; 2QTK A; 4LSI A; 3AA1 A; 3SY9 A; 3BS0 A; 1IZN A; 4O3W A; 2R8A A; 3A0B O; 5E79 O; 3SZD A; 3VE2 A; 3KZI O; 1ZHW A; 4E1T A; 5EE2 A; 3AA7 B; 3G7G A; 2IWW A; 2FGR A; 1BT9 A; 2N2M A; 2LFU A; 4D64 A; 3DA3 A; 1OSM A; 2KDY A; 4RJW A; 5JDP A; 2XTR A; 1GFP A; 3PGU A; 4GF4 A; 2Y2X A; 2XE2 A; 2PRN A; 2XE1 A; 3AA1 B; 4O3X B; 3T20 A; 1IZN B; 1E54 A; 2AXT O; 3AAA B; 4GCQ A; 5DL5 A; 5T5F A; 3T0S A; 2JQY A; 4AUI A; 2R4N A; 4AYI D; 4FQE A; 3PQS A; 4F4B A; 3DWO X; 2Y0K A; 4N59 A; 3JTY A; 3WU2 O; 3C5O A; 2M06 A; 3VY8 X; 2J4U P; 1OPF A; 5AFU L; 1H6S 1; 4RL9 A; 2F1T A; 2K0L A; 2W80 C; 1HXX A; 3BRY A; 2XG6 A; 3SZV A; 3WI5 A; 4CTD A; 2GE4 A; 4FT6 A; 5G26 A; 1MPF A; 2F1C X; 1T1L A; 2KZ7 A; 2WVP A; 3POQ A; 3T24 A; 3UU2 A; 1BXW A; 4RLC A; 5DL7 A; 2WJR A; 3PGR A; 5IYU A; 3HW9 A; 4N75 A; 3O0E A; 4FES A; 3SYB A; 3VY9 X; 3AAE A; 1QJ8 A; 4K3C A; 4KR4 A; 3WI4 A; 3PQU A; 5PRN A; 3LK2 A; 3POR A; 4AKM A; 5ADX K; 3A2S X; 4LSE A; 1BH3 A; 2KZ7 B; 2Y7S A; 1YS5 A; 4C69 X; 1ORM A; 1GFM A; 2Y0H A; 2ZLD A; 4FRT A; 5DL8 A; 1ZHY A; 4RJX A; 4O3Z A; 4JCH A; 4Z3T A; 2M07 A; 3SY7 A; 5AFU K; 2X27 X; 2N2L A; 3RBH A; 3NSG A; 3VE1 A; 3AAE B; 3DWN A; 2R4L A; 3HOE A; 4FUV A; 5GV0 A; 2MHL A; 3LK2 B; 4PR7 A; 2FGQ X; 5B5E O; 1S5L O; 2YPV A; 2K4T A; 3AA0 A; 3UAQ A; 3UPG A; 5DL6 A; 2MNH A; 4AKR A; 3HOL A; 4AYE C; 2R4O A; 4BUM X; 5ADX L; 2XTQ A; 3AA6 A; 3PF1 A; 3LK4 2; 4FMS A; 3BRZ A; 4PJ0 O; 4GHB A; 4KR8 A; 5B66 O; 3NJT A; 7PRN A; 3QRA A; #chains in the Genus database with same CATH homology 3BS0 A; 2R4P A; 3PGR A; 2R4N A; 2R8A A; 2R89 A; 3BRZ A; 3PF1 A; 3BRY A; 3DWN A; 3DWO X; 3PGS A; 2R4L A; 2R88 A; 3PGU A; 1T1L A; 2R4O A; 1T16 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
