3PGUA

Phe3glu mutant of ecfadl
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
425
structure length
408
Chain Sequence
b'AGEQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGRAFNNYGLQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
source organism Escherichia coli k-12
molecule tags Lipid transport
total genus 129
structure length 408
sequence length 425
ec nomenclature
pdb deposition date 2010-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3pguA00
1T1LA 3BRYA 3BS0A 3PF1A 2R4PA 2R8AA 2R4NA 2R89A 3DWOX 1T16A 3PGRA 3DWNA 2R4OA 2R4LA 3PGSA 3BRZA 2R88A 3PGUA
chains in the Genus database with same CATH superfamily
4RJXA 1GFOA 4K3BA 2AXTO 5GTHO 3A0HO 4O3XB 2FGQX 3AA0A 4AYMC 5ADXK 5GTIO 4C4VB 2XE5A 3LK41 3VZUX 4AYEC 3AA7B 2YPVA 2GE4A 4KRAA 3AA1B 5G26A 5G39A 3LK3B 4JCHA 3VZTX 1IZNB 5DL5A 2R8AA 1Q9GA 2Y7SA 4FZNA 3KVDD 3V8UA 3VY8X 2IWWA 3PRNA 5DL6A 5DL8A 2ERVA 2IWVA 5IYUA 3SYSA 4O3ZA 3AAAA 3G7GA 4XNKA 4AUIA 2M06A 2ODJA 2W81C 3AA0B 5DL7A 4C69X 1QJPA 1T16A 4O4UA 4PJ0O 3DA3A 3PGSA 4GHBA 6PRNA 4FOZA 1ZHWA 3WI5A 1S5LO 1OSMA 2M07A 3GP6A 1THQA 3SYBA 5AFUL 1Q9FA 1ZHTA 2O4VA 2XE2A 2ZLDA 4RLCA 3T24A 5H2FO 4N75A 5T5FA 3TZGA 3UPGA 5KAIO 4QQ1A 1GFNA 4C00A 1GFQA 2XTRA 2F1TA 2QTKA 2R4LA 3K19A 3O0EA 4FRXA 1P4TA 4PUXA 5KAFO 2XMXA 5ADXL 1G90A 2Y0LA 3RBHA 5FVNA 3VE1A 3DWNA 4UB8O 1BH3A 3AAEA 3DA4A 3LK2A 4AKRA 5TISO 2KDYA 4B61A 3PGUA 7PRNA 2J4UP 3BRYA 4O3WA 2WVPA 2KC0A 2X27X 1E54A 1MM5A 3KZIO 3PGRA 3QRCA 4FZMA 3FYXA 3UU2A 4PR7A 4O4XA 4AZLA 3HOLA 3SY7A 3DZMA 1ZHXA 2PORA 1GFMA 2Y2XA 3A0BO 4FSPA 1ZHYA 1YS5A 2KXPA 2X9KA 1H6S1 1ORMA 4FT6A 4LSFA 4RL9A 4XNLA 2XE3A 2R4OA 4O3YA 1BXWA 3HWBA 4N74A 3VZWX 4AFKA 1QJ9A 2Y0HA 4LSEA 1OPFA 4GCSA 3SY9A 3C5OA 1T1LA 3BS0A 3AAAB 3AA6A 5EE2A 4AKRB 2R4NA 4FMSA 4D65A 5GV0A 2MHLA 4G75A 3POUA 3BRZA 2KZ7A 3PQUA 4LSIA 3NJTA 3PQSA 2W80C 2WJQA 3PORA 4KR4A 2KXPB 4FRTA 2R4PA 3DWOX 1HXXA 3HOEA 3HW9A 4KR8A 4O49A 5B66O 5G38A 5B5EO 2K0LA 4JFBA 2PRNA 2JMMA 3JCUO 3VY9X 1BT9A 5G3AA 2F1VA 2LHFA 3T20A 2R89A 3JTYA 2Y0KA 4C4VA 4N59A 5D5DA 1HXUA 3A2SX 3AA7A 2J1NA 8PRNA 3AA1A 4N58A 3LK3A 4D5UA 1IZNA 4F4BA 3PF1A 4U9CA 4CTDA 4FESA 2ZFGA 3POXA 1QJ8A 3AAEB 3SZVA 3LK2B 5PRNA 2FGRA 2XG6A 4RLBA 1GFPA 3NSGA 4K3CA 4RJWA 3VE2A 4UB6O 4Z3TA 2R88A 4AKMA 4AYDC 2N2MA 3WI4A 4D64A 4FUVA 4AYNA 2N2LA 2F1CX 3LK42 4GF4A 4AYID 2WJRA 3EMNX 1MM4A 4E1SA 5E79O 4BUMX 2XTQA 4LSHA 1PHOA 1ZHZA 3AA6B 4GCQA 4E1TA 1HXTA 4FQEA 4FSOA 5AFUK 2OMFA 2XE1A 4FZLA 2KZ7B 3WU2O 2K4TA 1PRNA 4IL6O 3SZDA 4G76A 2JQYA 2LFUA 1MPFA 2YNKA 4GCPA 5JDPA 3UAQA 2MNHA 3T0SA 3QRAA 3POQA
chains in the Genus database with same CATH topology
1T1LA 3BRYA 3BS0A 3PF1A 2R4PA 2R8AA 2R4NA 2R89A 3DWOX 1T16A 3PGRA 3DWNA 2R4OA 2R4LA 3PGSA 3BRZA 2R88A 3PGUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T1L A;  3BRY A;  3BS0 A;  3PF1 A;  2R4P A;  2R8A A;  2R4N A;  2R89 A;  3DWO X;  1T16 A;  3PGR A;  3DWN A;  2R4O A;  2R4L A;  3PGS A;  3BRZ A;  2R88 A;  3PGU A; 
#chains in the Genus database with same CATH topology
 4RJX A;  1GFO A;  4K3B A;  2AXT O;  5GTH O;  3A0H O;  4O3X B;  2FGQ X;  3AA0 A;  4AYM C;  5ADX K;  5GTI O;  4C4V B;  2XE5 A;  3LK4 1;  3VZU X;  4AYE C;  3AA7 B;  2YPV A;  2GE4 A;  4KRA A;  3AA1 B;  5G26 A;  5G39 A;  3LK3 B;  4JCH A;  3VZT X;  1IZN B;  5DL5 A;  2R8A A;  1Q9G A;  2Y7S A;  4FZN A;  3KVD D;  3V8U A;  3VY8 X;  2IWW A;  3PRN A;  5DL6 A;  5DL8 A;  2ERV A;  2IWV A;  5IYU A;  3SYS A;  4O3Z A;  3AAA A;  3G7G A;  4XNK A;  4AUI A;  2M06 A;  2ODJ A;  2W81 C;  3AA0 B;  5DL7 A;  4C69 X;  1QJP A;  1T16 A;  4O4U A;  4PJ0 O;  3DA3 A;  3PGS A;  4GHB A;  6PRN A;  4FOZ A;  1ZHW A;  3WI5 A;  1S5L O;  1OSM A;  2M07 A;  3GP6 A;  1THQ A;  3SYB A;  5AFU L;  1Q9F A;  1ZHT A;  2O4V A;  2XE2 A;  2ZLD A;  4RLC A;  3T24 A;  5H2F O;  4N75 A;  5T5F A;  3TZG A;  3UPG A;  5KAI O;  4QQ1 A;  1GFN A;  4C00 A;  1GFQ A;  2XTR A;  2F1T A;  2QTK A;  2R4L A;  3K19 A;  3O0E A;  4FRX A;  1P4T A;  4PUX A;  5KAF O;  2XMX A;  5ADX L;  1G90 A;  2Y0L A;  3RBH A;  5FVN A;  3VE1 A;  3DWN A;  4UB8 O;  1BH3 A;  3AAE A;  3DA4 A;  3LK2 A;  4AKR A;  5TIS O;  2KDY A;  4B61 A;  3PGU A;  7PRN A;  2J4U P;  3BRY A;  4O3W A;  2WVP A;  2KC0 A;  2X27 X;  1E54 A;  1MM5 A;  3KZI O;  3PGR A;  3QRC A;  4FZM A;  3FYX A;  3UU2 A;  4PR7 A;  4O4X A;  4AZL A;  3HOL A;  3SY7 A;  3DZM A;  1ZHX A;  2POR A;  1GFM A;  2Y2X A;  3A0B O;  4FSP A;  1ZHY A;  1YS5 A;  2KXP A;  2X9K A;  1H6S 1;  1ORM A;  4FT6 A;  4LSF A;  4RL9 A;  4XNL A;  2XE3 A;  2R4O A;  4O3Y A;  1BXW A;  3HWB A;  4N74 A;  3VZW X;  4AFK A;  1QJ9 A;  2Y0H A;  4LSE A;  1OPF A;  4GCS A;  3SY9 A;  3C5O A;  1T1L A;  3BS0 A;  3AAA B;  3AA6 A;  5EE2 A;  4AKR B;  2R4N A;  4FMS A;  4D65 A;  5GV0 A;  2MHL A;  4G75 A;  3POU A;  3BRZ A;  2KZ7 A;  3PQU A;  4LSI A;  3NJT A;  3PQS A;  2W80 C;  2WJQ A;  3POR A;  4KR4 A;  2KXP B;  4FRT A;  2R4P A;  3DWO X;  1HXX A;  3HOE A;  3HW9 A;  4KR8 A;  4O49 A;  5B66 O;  5G38 A;  5B5E O;  2K0L A;  4JFB A;  2PRN A;  2JMM A;  3JCU O;  3VY9 X;  1BT9 A;  5G3A A;  2F1V A;  2LHF A;  3T20 A;  2R89 A;  3JTY A;  2Y0K A;  4C4V A;  4N59 A;  5D5D A;  1HXU A;  3A2S X;  3AA7 A;  2J1N A;  8PRN A;  3AA1 A;  4N58 A;  3LK3 A;  4D5U A;  1IZN A;  4F4B A;  3PF1 A;  4U9C A;  4CTD A;  4FES A;  2ZFG A;  3POX A;  1QJ8 A;  3AAE B;  3SZV A;  3LK2 B;  5PRN A;  2FGR A;  2XG6 A;  4RLB A;  1GFP A;  3NSG A;  4K3C A;  4RJW A;  3VE2 A;  4UB6 O;  4Z3T A;  2R88 A;  4AKM A;  4AYD C;  2N2M A;  3WI4 A;  4D64 A;  4FUV A;  4AYN A;  2N2L A;  2F1C X;  3LK4 2;  4GF4 A;  4AYI D;  2WJR A;  3EMN X;  1MM4 A;  4E1S A;  5E79 O;  4BUM X;  2XTQ A;  4LSH A;  1PHO A;  1ZHZ A;  3AA6 B;  4GCQ A;  4E1T A;  1HXT A;  4FQE A;  4FSO A;  5AFU K;  2OMF A;  2XE1 A;  4FZL A;  2KZ7 B;  3WU2 O;  2K4T A;  1PRN A;  4IL6 O;  3SZD A;  4G76 A;  2JQY A;  2LFU A;  1MPF A;  2YNK A;  4GCP A;  5JDP A;  3UAQ A;  2MNH A;  3T0S A;  3QRA A;  3POQ A; 
#chains in the Genus database with same CATH homology
 1T1L A;  3BRY A;  3BS0 A;  3PF1 A;  2R4P A;  2R8A A;  2R4N A;  2R89 A;  3DWO X;  1T16 A;  3PGR A;  3DWN A;  2R4O A;  2R4L A;  3PGS A;  3BRZ A;  2R88 A;  3PGU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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