3PGUA

Phe3glu mutant of ecfadl
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
425
structure length
408
Chain Sequence
AGEQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGRAFNNYGLQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
source organism Escherichia coli k-12
publication title From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
total genus 129
structure length 408
sequence length 425
ec nomenclature
pdb deposition date 2010-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3pguA00
2R8AA 3BRYA 3DWOX 3PGUA 3PGRA 1T1LA 2R4PA 3BS0A 2R88A 2R4OA 3BRZA 2R89A 3PF1A 2R4LA 3PGSA 2R4NA 1T16A 3DWNA
chains in the Genus database with same CATH superfamily
3SYSA 3POUA 4RJXA 4XNKA 3LK41 3LK2A 4AKMA 4AUIA 2ODJA 3POQA 2MNHA 4GF4A 4O3YA 4RLCA 5G38A 2WJQA 3UU2A 4FRTA 2QTKA 3QRCA 4K3BA 3AA6B 3WI4A 2XTRA 3G7GA 3C5OA 2IWVA 1H6S1 1THQA 1GFMA 4LSEA 5D5DA 3V8UA 5DL6A 3POXA 4G75A 3VZWX 3DWNA 3KVDD 3LK3A 4AYID 1HXTA 3O0EA 1PHOA 1QJPA 1HXXA 4FSPA 5GTIO 1E54A 2XTQA 3T24A 4AYNA 2J4UP 2KXPB 5G3AA 3VE1A 3A0BO 4CTDA 4E1SA 2R88A 5KAIO 3SY9A 3A0HO 3A2SX 1YS5A 2M07A 5GTHO 1G90A 4C4VA 2R8AA 4N58A 3PORA 1ZHYA 2LHFA 3AA1A 4RL9A 4RJWA 4D65A 1PRNA 4N74A 2XE5A 3VZUX 4N59A 2R4LA 4AYDC 3PQSA 4JFBA 5B66O 2W81C 1IZNB 3PGSA 3SY7A 2LFUA 4AYMC 3DZMA 4D5UA 3PGUA 3PGRA 3AAEA 2XMXA 4F4BA 1BH3A 4JCHA 4AYEC 3SZDA 1ZHWA 2XG6A 1ZHZA 3JCUO 1ZHXA 3AA7B 2F1VA 3EMNX 5PRNA 4B61A 5TISO 1T16A 4O3XB 4AKRA 5H2FO 3BRYA 3LK2B 2J1NA 3VY9X 3QRAA 3UAQA 4PR7A 2Y0LA 4FUVA 3AAAB 3NJTA 2MHLA 4FSOA 4LSFA 2M06A 3AA6A 4KR4A 2R4OA 3AA0B 2YNKA 5G26A 5AFUL 1BT9A 2JMMA 2Y0HA 4LSHA 4O3WA 8PRNA 3DA3A 3DWOX 4O4XA 2Y2XA 5G39A 3VY8X 1QJ9A 3SZVA 4D64A 1ZHTA 4LSIA 1OSMA 2KDYA 3HWBA 4KRAA 5DL7A 2KXPA 4GCSA 3BS0A 2KZ7A 3UPGA 3VZTX 5DL8A 4C4VB 4PJ0O 5DL5A 2JQYA 3PQUA 2R4NA 7PRNA 2O4VA 3DA4A 1BXWA 3SYBA 5GV0A 1T1LA 3FYXA 3PRNA 5EE2A 3T0SA 4BUMX 4Z3TA 1MM4A 4KR8A 3T20A 1S5LO 3VE2A 4K3CA 2PORA 3PF1A 1HXUA 2KC0A 2ZLDA 4FZMA 5E79O 5ADXL 4O49A 3TZGA 2AXTO 2N2LA 2W80C 4AKRB 4O4UA 1Q9FA 4GHBA 4U9CA 2FGQX 3K19A 3LK3B 4FQEA 3RBHA 4E1TA 1ORMA 4FZNA 1GFPA 4C69X 3JTYA 2GE4A 2OMFA 5T5FA 3AAAA 4GCQA 1MM5A 5IYUA 5JDPA 2Y7SA 5FVNA 6PRNA 4PUXA 1GFQA 2R4PA 1GFOA 3HOEA 2K4TA 2PRNA 3AA0A 3BRZA 3HOLA 3KZIO 4FRXA 2WJRA 2Y0KA 4FOZA 5B5EO 1OPFA 2ZFGA 2ERVA 4G76A 4IL6O 4XNLA 1QJ8A 2XE2A 3NSGA 3AA1B 3WI5A 4AZLA 1P4TA 2F1CX 2FGRA 2K0LA 4FT6A 2IWWA 2N2MA 4FMSA 2R89A 4N75A 4QQ1A 4UB6O 5ADXK 4FZLA 2XE3A 4O3ZA 1MPFA 3HW9A 2KZ7B 2F1TA 2X9KA 4RLBA 4UB8O 3AAEB 5KAFO 1IZNA 1GFNA 2WVPA 2XE1A 5AFUK 4AFKA 3LK42 1Q9GA 2YPVA 4GCPA 3GP6A 4C00A 4FESA 2X27X 3AA7A 3WU2O
chains in the Genus database with same CATH topology
2R8AA 3BRYA 3DWOX 3PGUA 3PGRA 1T1LA 2R4PA 3BS0A 2R88A 2R4OA 3BRZA 2R89A 3PF1A 2R4LA 3PGSA 2R4NA 1T16A 3DWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R8A A;  3BRY A;  3DWO X;  3PGU A;  3PGR A;  1T1L A;  2R4P A;  3BS0 A;  2R88 A;  2R4O A;  3BRZ A;  2R89 A;  3PF1 A;  2R4L A;  3PGS A;  2R4N A;  1T16 A;  3DWN A; 
#chains in the Genus database with same CATH topology
 3SYS A;  3POU A;  4RJX A;  4XNK A;  3LK4 1;  3LK2 A;  4AKM A;  4AUI A;  2ODJ A;  3POQ A;  2MNH A;  4GF4 A;  4O3Y A;  4RLC A;  5G38 A;  2WJQ A;  3UU2 A;  4FRT A;  2QTK A;  3QRC A;  4K3B A;  3AA6 B;  3WI4 A;  2XTR A;  3G7G A;  3C5O A;  2IWV A;  1H6S 1;  1THQ A;  1GFM A;  4LSE A;  5D5D A;  3V8U A;  5DL6 A;  3POX A;  4G75 A;  3VZW X;  3DWN A;  3KVD D;  3LK3 A;  4AYI D;  1HXT A;  3O0E A;  1PHO A;  1QJP A;  1HXX A;  4FSP A;  5GTI O;  1E54 A;  2XTQ A;  3T24 A;  4AYN A;  2J4U P;  2KXP B;  5G3A A;  3VE1 A;  3A0B O;  4CTD A;  4E1S A;  2R88 A;  5KAI O;  3SY9 A;  3A0H O;  3A2S X;  1YS5 A;  2M07 A;  5GTH O;  1G90 A;  4C4V A;  2R8A A;  4N58 A;  3POR A;  1ZHY A;  2LHF A;  3AA1 A;  4RL9 A;  4RJW A;  4D65 A;  1PRN A;  4N74 A;  2XE5 A;  3VZU X;  4N59 A;  2R4L A;  4AYD C;  3PQS A;  4JFB A;  5B66 O;  2W81 C;  1IZN B;  3PGS A;  3SY7 A;  2LFU A;  4AYM C;  3DZM A;  4D5U A;  3PGU A;  3PGR A;  3AAE A;  2XMX A;  4F4B A;  1BH3 A;  4JCH A;  4AYE C;  3SZD A;  1ZHW A;  2XG6 A;  1ZHZ A;  3JCU O;  1ZHX A;  3AA7 B;  2F1V A;  3EMN X;  5PRN A;  4B61 A;  5TIS O;  1T16 A;  4O3X B;  4AKR A;  5H2F O;  3BRY A;  3LK2 B;  2J1N A;  3VY9 X;  3QRA A;  3UAQ A;  4PR7 A;  2Y0L A;  4FUV A;  3AAA B;  3NJT A;  2MHL A;  4FSO A;  4LSF A;  2M06 A;  3AA6 A;  4KR4 A;  2R4O A;  3AA0 B;  2YNK A;  5G26 A;  5AFU L;  1BT9 A;  2JMM A;  2Y0H A;  4LSH A;  4O3W A;  8PRN A;  3DA3 A;  3DWO X;  4O4X A;  2Y2X A;  5G39 A;  3VY8 X;  1QJ9 A;  3SZV A;  4D64 A;  1ZHT A;  4LSI A;  1OSM A;  2KDY A;  3HWB A;  4KRA A;  5DL7 A;  2KXP A;  4GCS A;  3BS0 A;  2KZ7 A;  3UPG A;  3VZT X;  5DL8 A;  4C4V B;  4PJ0 O;  5DL5 A;  2JQY A;  3PQU A;  2R4N A;  7PRN A;  2O4V A;  3DA4 A;  1BXW A;  3SYB A;  5GV0 A;  1T1L A;  3FYX A;  3PRN A;  5EE2 A;  3T0S A;  4BUM X;  4Z3T A;  1MM4 A;  4KR8 A;  3T20 A;  1S5L O;  3VE2 A;  4K3C A;  2POR A;  3PF1 A;  1HXU A;  2KC0 A;  2ZLD A;  4FZM A;  5E79 O;  5ADX L;  4O49 A;  3TZG A;  2AXT O;  2N2L A;  2W80 C;  4AKR B;  4O4U A;  1Q9F A;  4GHB A;  4U9C A;  2FGQ X;  3K19 A;  3LK3 B;  4FQE A;  3RBH A;  4E1T A;  1ORM A;  4FZN A;  1GFP A;  4C69 X;  3JTY A;  2GE4 A;  2OMF A;  5T5F A;  3AAA A;  4GCQ A;  1MM5 A;  5IYU A;  5JDP A;  2Y7S A;  5FVN A;  6PRN A;  4PUX A;  1GFQ A;  2R4P A;  1GFO A;  3HOE A;  2K4T A;  2PRN A;  3AA0 A;  3BRZ A;  3HOL A;  3KZI O;  4FRX A;  2WJR A;  2Y0K A;  4FOZ A;  5B5E O;  1OPF A;  2ZFG A;  2ERV A;  4G76 A;  4IL6 O;  4XNL A;  1QJ8 A;  2XE2 A;  3NSG A;  3AA1 B;  3WI5 A;  4AZL A;  1P4T A;  2F1C X;  2FGR A;  2K0L A;  4FT6 A;  2IWW A;  2N2M A;  4FMS A;  2R89 A;  4N75 A;  4QQ1 A;  4UB6 O;  5ADX K;  4FZL A;  2XE3 A;  4O3Z A;  1MPF A;  3HW9 A;  2KZ7 B;  2F1T A;  2X9K A;  4RLB A;  4UB8 O;  3AAE B;  5KAF O;  1IZN A;  1GFN A;  2WVP A;  2XE1 A;  5AFU K;  4AFK A;  3LK4 2;  1Q9G A;  2YPV A;  4GCP A;  3GP6 A;  4C00 A;  4FES A;  2X27 X;  3AA7 A;  3WU2 O; 
#chains in the Genus database with same CATH homology
 2R8A A;  3BRY A;  3DWO X;  3PGU A;  3PGR A;  1T1L A;  2R4P A;  3BS0 A;  2R88 A;  2R4O A;  3BRZ A;  2R89 A;  3PF1 A;  2R4L A;  3PGS A;  2R4N A;  1T16 A;  3DWN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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