1MPFA

Structural and functional alterations of a colicin resistant mutant of ompf-porin from escherichia coli
Total Genus 100
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
340
structure length
340
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFDGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
source organism Escherichia coli
publication title Structural and functional alterations of a colicin-resistant mutant of OmpF porin from Escherichia coli.
pubmed doi rcsb
molecule keywords MATRIX PORIN OUTER MEMBRANE PROTEIN F
total genus 100
structure length 340
sequence length 340
ec nomenclature
pdb deposition date 1994-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1mpfA00
4RJWA 1MPFA 2ZFGA 5DL8A 3UU2A 3JTYA 1BH3A 4FRTA 7PRNA 4FSPA 3SZDA 3POUA 1GFOA 5PRNA 2J1NA 3SYSA 3SZVA 8PRNA 5JDPA 4FSOA 4JFBA 4LSIA 4FT6A 3SYBA 2Y2XA 3HW9A 3VZWX 2Y0HA 3T0SA 3FYXA 3HWBA 3POQA 1BT9A 2PORA 4LSHA 2OMFA 2XE1A 4KRAA 3A2SX 4LSEA 1GFPA 3SY7A 1OPFA 4RJXA 3VZUX 4KR8A 2FGRA 4D5UA 4FOZA 3POXA 3SY9A 1GFQA 3T24A 4C69X 3O0EA 4D65A 3VY9X 1HXUA 4LSFA 2XG6A 1PHOA 4GCQA 4KR4A 4GCPA 4AUIA 2Y0LA 2Y0KA 4GCSA 3K19A 3PRNA 6PRNA 4BUMX 2XE2A 2PRNA 3EMNX 5FVNA 2ZLDA 4D64A 1PRNA 1GFNA 3VY8X 2O4VA 3VZTX 2QTKA 3PORA 4FMSA 3WI5A 3UPGA 5DL5A 5DL6A 2J4UP 2ODJA 1E54A 1H6S1 2FGQX 1GFMA 2K4TA 4FRXA 2XE5A 2XE3A 3T20A 3NSGA 1HXXA 1HXTA 3WI4A 5DL7A 1OSMA
chains in the Genus database with same CATH superfamily
4O49A 4RJWA 3HOEA 1MPFA 4JCHA 5G39A 2K0LA 2ZFGA 5DL8A 3KZIO 3UU2A 3JTYA 1BH3A 4FRTA 2F1TA 3NJTA 4C00A 7PRNA 1ZHYA 4FSPA 4PJ0O 3SZDA 1ZHWA 3POUA 1GFOA 2LHFA 2YPVA 4FZNA 2F1CX 2J1NA 2Y7SA 5PRNA 3SZVA 3SYSA 2IWWA 8PRNA 3LK41 5JDPA 4PR7A 4AZLA 4FSOA 4AYID 3DA3A 5ADXK 4JFBA 4LSIA 3A0BO 4N75A 2R4PA 1T16A 4FT6A 4K3BA 5EE2A 2WJRA 3SYBA 1QJ9A 2W81C 1G90A 4AYNA 2Y2XA 1Q9GA 3HW9A 4GHBA 3TZGA 1QJ8A 3V8UA 2JQYA 5KAFO 4CTDA 5GV0A 2R88A 3VZWX 2Y0HA 4QQ1A 2XMXA 2KDYA 4FQEA 3T0SA 3G7GA 3QRCA 2F1VA 3FYXA 5T5FA 3AA0A 4FZLA 5KAIO 3HWBA 4AKMA 1MM5A 3UPGA 4AFKA 3POQA 5AFUL 1BT9A 4E1SA 2R4OA 5H2FO 2PORA 4LSHA 2OMFA 2XE1A 2MNHA 3AA0B 4KRAA 3A2SX 4LSEA 3AA6A 1GFPA 4AYMC 3SY7A 1OPFA 1ZHTA 1P4TA 3C5OA 3PQUA 4O4XA 4KR8A 2FGRA 2N2LA 4RJXA 4RLCA 3VZUX 4GF4A 4D5UA 1ZHZA 3LK3A 3AA6B 3POXA 3JCUO 4FOZA 5E79O 1QJPA 1Q9FA 3SY9A 2MHLA 3UAQA 1GFQA 3T24A 4RLBA 4AKRA 5GTIO 3VE2A 4XNKA 2M07A 3BRYA 3LK3B 3DZMA 4B61A 4AYDC 4C69X 5AFUK 3O0EA 4G75A 4D65A 1ZHXA 2ERVA 3VY9X 5G38A 4AKRB 4XNLA 3DA4A 4Z3TA 2KZ7A 1HXUA 2X9KA 1MM4A 2WVPA 4LSFA 2XG6A 1PHOA 4GCQA 4KR4A 4GCPA 4AUIA 4N58A 3LK42 5G3AA 2KZ7B 2Y0LA 2Y0KA 4C4VA 5B66O 4GCSA 2WJQA 4UB8O 3K19A 3PRNA 3AA1A 5G26A 2M06A 1BXWA 4O3ZA 4C4VB 6PRNA 4BUMX 2XE2A 4O3XB 5DL7A 1IZNA 2GE4A 2PRNA 3AA1B 3DWNA 4FESA 3HOLA 4F4BA 2X27X 2R4NA 2R89A 3BS0A 2XTQA 3EMNX 4UB6O 2KXPA 4IL6O 5FVNA 5IYUA 1IZNB 2ZLDA 5ADXL 3AAAA 4N74A 4O4UA 4D64A 1ORMA 1PRNA 1GFNA 4O3YA 1THQA 2KXPB 3AA7A 3PQSA 2IWVA 3PGSA 4G76A 2O4VA 4K3CA 4PUXA 3KVDD 3VY8X 3AAAB 3VZTX 3DWOX 3QRAA 5GTHO 3GP6A 2QTKA 3AA7B 3AAEA 3PORA 4FMSA 2KC0A 3VE1A 3WI5A 3PF1A 5B5EO 4O3WA 2JMMA 3LK2A 4FUVA 2AXTO 2YNKA 1T1LA 4FZMA 5DL5A 3RBHA 2R8AA 3AAEB 5DL6A 4AYEC 2J4UP 2ODJA 5TISO 1E54A 1YS5A 1H6S1 2FGQX 1GFMA 3A0HO 2K4TA 3LK2B 3PGRA 3PGUA 2LFUA 2N2MA 2XE5A 2XE3A 2XTRA 4FRXA 5D5DA 4E1TA 3BRZA 4N59A 3T20A 3NSGA 1HXXA 1HXTA 2W80C 4RL9A 1S5LO 3WI4A 2R4LA 3WU2O 4U9CA 1OSMA
chains in the Genus database with same CATH topology
4O49A 4RJWA 3HOEA 1MPFA 4JCHA 2K0LA 2ZFGA 5DL8A 3UU2A 3JTYA 1BH3A 4FRTA 2F1TA 7PRNA 1ZHYA 4FSPA 3SZDA 1ZHWA 3POUA 1GFOA 2LHFA 2YPVA 4FZNA 5PRNA 2J1NA 2Y7SA 3SZVA 3SYSA 8PRNA 3LK41 5JDPA 4AZLA 4FSOA 4AYID 3DA3A 5ADXK 4JFBA 4LSIA 4FT6A 5EE2A 3SYBA 1QJ9A 2W81C 1G90A 4AYNA 2Y2XA 1Q9GA 3HW9A 4GHBA 3TZGA 1QJ8A 3V8UA 5GV0A 3VZWX 2Y0HA 4QQ1A 2XMXA 2KDYA 3T0SA 3G7GA 3QRCA 2F1VA 3FYXA 5T5FA 3AA0A 4FZLA 4AKMA 3HWBA 1MM5A 4AFKA 3POQA 5AFUL 1BT9A 4E1SA 2PORA 4LSHA 2OMFA 2XE1A 2MNHA 3AA0B 4KRAA 3A2SX 4LSEA 3AA6A 1GFPA 4AYMC 3SY7A 1OPFA 1ZHTA 1P4TA 3C5OA 3PQUA 4O4XA 4KR8A 2FGRA 2N2LA 4RJXA 4RLCA 3VZUX 4GF4A 4D5UA 1ZHZA 3LK3A 3AA6B 3POXA 4FOZA 1QJPA 1Q9FA 3SY9A 2MHLA 3UAQA 1GFQA 3T24A 4RLBA 4AKRA 3VE2A 4XNKA 2M07A 3LK3B 4B61A 4AYDC 4C69X 5AFUK 3O0EA 4G75A 4D65A 1ZHXA 2ERVA 3VY9X 4AKRB 4XNLA 3DA4A 4Z3TA 2KZ7A 1HXUA 1MM4A 4LSFA 2XG6A 1PHOA 4GCQA 4KR4A 4GCPA 4AUIA 4N58A 3LK42 2KZ7B 2Y0LA 2Y0KA 4GCSA 3K19A 3PRNA 3AA1A 5G26A 2M06A 1BXWA 4O3ZA 6PRNA 4BUMX 2XE2A 4O3XB 1IZNA 2GE4A 2PRNA 3AA1B 4FESA 3HOLA 4F4BA 2X27X 2XTQA 3EMNX 2KXPA 5FVNA 5IYUA 1IZNB 2ZLDA 5ADXL 3AAAA 4O4UA 4D64A 1ORMA 1PRNA 1GFNA 4O3YA 1THQA 2KXPB 3AA7A 3PQSA 4G76A 4PUXA 5D5DA 2O4VA 3VY8X 3KVDD 3AAAB 3VZTX 3QRAA 3GP6A 2QTKA 3AA7B 3AAEA 3PORA 4FMSA 2KC0A 3VE1A 3WI5A 3UPGA 4O3WA 2JMMA 3LK2A 4FUVA 2YNKA 4FZMA 5DL5A 3RBHA 4E1TA 3AAEB 5DL6A 4AYEC 2J4UP 2ODJA 1E54A 1YS5A 1H6S1 2FGQX 1GFMA 3LK2B 2K4TA 2LFUA 2N2MA 2XE5A 2XE3A 2XTRA 4FRXA 4N59A 3T20A 3NSGA 1HXXA 1HXTA 2W80C 4RL9A 3WI4A 5DL7A 4U9CA 1OSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RJW A;  1MPF A;  2ZFG A;  5DL8 A;  3UU2 A;  3JTY A;  1BH3 A;  4FRT A;  7PRN A;  4FSP A;  3SZD A;  3POU A;  1GFO A;  5PRN A;  2J1N A;  3SYS A;  3SZV A;  8PRN A;  5JDP A;  4FSO A;  4JFB A;  4LSI A;  4FT6 A;  3SYB A;  2Y2X A;  3HW9 A;  3VZW X;  2Y0H A;  3T0S A;  3FYX A;  3HWB A;  3POQ A;  1BT9 A;  2POR A;  4LSH A;  2OMF A;  2XE1 A;  4KRA A;  3A2S X;  4LSE A;  1GFP A;  3SY7 A;  1OPF A;  4RJX A;  3VZU X;  4KR8 A;  2FGR A;  4D5U A;  4FOZ A;  3POX A;  3SY9 A;  1GFQ A;  3T24 A;  4C69 X;  3O0E A;  4D65 A;  3VY9 X;  1HXU A;  4LSF A;  2XG6 A;  1PHO A;  4GCQ A;  4KR4 A;  4GCP A;  4AUI A;  2Y0L A;  2Y0K A;  4GCS A;  3K19 A;  3PRN A;  6PRN A;  4BUM X;  2XE2 A;  2PRN A;  3EMN X;  5FVN A;  2ZLD A;  4D64 A;  1PRN A;  1GFN A;  3VY8 X;  2O4V A;  3VZT X;  2QTK A;  3POR A;  4FMS A;  3WI5 A;  3UPG A;  5DL5 A;  5DL6 A;  2J4U P;  2ODJ A;  1E54 A;  1H6S 1;  2FGQ X;  1GFM A;  2K4T A;  4FRX A;  2XE5 A;  2XE3 A;  3T20 A;  3NSG A;  1HXX A;  1HXT A;  3WI4 A;  5DL7 A;  1OSM A; 
#chains in the Genus database with same CATH topology
 4O49 A;  4RJW A;  3HOE A;  1MPF A;  4JCH A;  5G39 A;  2K0L A;  2ZFG A;  5DL8 A;  3KZI O;  3UU2 A;  3JTY A;  1BH3 A;  4FRT A;  2F1T A;  3NJT A;  4C00 A;  7PRN A;  1ZHY A;  4FSP A;  4PJ0 O;  3SZD A;  1ZHW A;  3POU A;  1GFO A;  2LHF A;  2YPV A;  4FZN A;  2F1C X;  2J1N A;  2Y7S A;  5PRN A;  3SZV A;  3SYS A;  2IWW A;  8PRN A;  3LK4 1;  5JDP A;  4PR7 A;  4AZL A;  4FSO A;  4AYI D;  3DA3 A;  5ADX K;  4JFB A;  4LSI A;  3A0B O;  4N75 A;  2R4P A;  1T16 A;  4FT6 A;  4K3B A;  5EE2 A;  2WJR A;  3SYB A;  1QJ9 A;  2W81 C;  1G90 A;  4AYN A;  2Y2X A;  1Q9G A;  3HW9 A;  4GHB A;  3TZG A;  1QJ8 A;  3V8U A;  2JQY A;  5KAF O;  4CTD A;  5GV0 A;  2R88 A;  3VZW X;  2Y0H A;  4QQ1 A;  2XMX A;  2KDY A;  4FQE A;  3T0S A;  3G7G A;  3QRC A;  2F1V A;  3FYX A;  5T5F A;  3AA0 A;  4FZL A;  5KAI O;  3HWB A;  4AKM A;  1MM5 A;  3UPG A;  4AFK A;  3POQ A;  5AFU L;  1BT9 A;  4E1S A;  2R4O A;  5H2F O;  2POR A;  4LSH A;  2OMF A;  2XE1 A;  2MNH A;  3AA0 B;  4KRA A;  3A2S X;  4LSE A;  3AA6 A;  1GFP A;  4AYM C;  3SY7 A;  1OPF A;  1ZHT A;  1P4T A;  3C5O A;  3PQU A;  4O4X A;  4KR8 A;  2FGR A;  2N2L A;  4RJX A;  4RLC A;  3VZU X;  4GF4 A;  4D5U A;  1ZHZ A;  3LK3 A;  3AA6 B;  3POX A;  3JCU O;  4FOZ A;  5E79 O;  1QJP A;  1Q9F A;  3SY9 A;  2MHL A;  3UAQ A;  1GFQ A;  3T24 A;  4RLB A;  4AKR A;  5GTI O;  3VE2 A;  4XNK A;  2M07 A;  3BRY A;  3LK3 B;  3DZM A;  4B61 A;  4AYD C;  4C69 X;  5AFU K;  3O0E A;  4G75 A;  4D65 A;  1ZHX A;  2ERV A;  3VY9 X;  5G38 A;  4AKR B;  4XNL A;  3DA4 A;  4Z3T A;  2KZ7 A;  1HXU A;  2X9K A;  1MM4 A;  2WVP A;  4LSF A;  2XG6 A;  1PHO A;  4GCQ A;  4KR4 A;  4GCP A;  4AUI A;  4N58 A;  3LK4 2;  5G3A A;  2KZ7 B;  2Y0L A;  2Y0K A;  4C4V A;  5B66 O;  4GCS A;  2WJQ A;  4UB8 O;  3K19 A;  3PRN A;  3AA1 A;  5G26 A;  2M06 A;  1BXW A;  4O3Z A;  4C4V B;  6PRN A;  4BUM X;  2XE2 A;  4O3X B;  5DL7 A;  1IZN A;  2GE4 A;  2PRN A;  3AA1 B;  3DWN A;  4FES A;  3HOL A;  4F4B A;  2X27 X;  2R4N A;  2R89 A;  3BS0 A;  2XTQ A;  3EMN X;  4UB6 O;  2KXP A;  4IL6 O;  5FVN A;  5IYU A;  1IZN B;  2ZLD A;  5ADX L;  3AAA A;  4N74 A;  4O4U A;  4D64 A;  1ORM A;  1PRN A;  1GFN A;  4O3Y A;  1THQ A;  2KXP B;  3AA7 A;  3PQS A;  2IWV A;  3PGS A;  4G76 A;  2O4V A;  4K3C A;  4PUX A;  3KVD D;  3VY8 X;  3AAA B;  3VZT X;  3DWO X;  3QRA A;  5GTH O;  3GP6 A;  2QTK A;  3AA7 B;  3AAE A;  3POR A;  4FMS A;  2KC0 A;  3VE1 A;  3WI5 A;  3PF1 A;  5B5E O;  4O3W A;  2JMM A;  3LK2 A;  4FUV A;  2AXT O;  2YNK A;  1T1L A;  4FZM A;  5DL5 A;  3RBH A;  2R8A A;  3AAE B;  5DL6 A;  4AYE C;  2J4U P;  2ODJ A;  5TIS O;  1E54 A;  1YS5 A;  1H6S 1;  2FGQ X;  1GFM A;  3A0H O;  2K4T A;  3LK2 B;  3PGR A;  3PGU A;  2LFU A;  2N2M A;  2XE5 A;  2XE3 A;  2XTR A;  4FRX A;  5D5D A;  4E1T A;  3BRZ A;  4N59 A;  3T20 A;  3NSG A;  1HXX A;  1HXT A;  2W80 C;  4RL9 A;  1S5L O;  3WI4 A;  2R4L A;  3WU2 O;  4U9C A;  1OSM A; 
#chains in the Genus database with same CATH homology
 4O49 A;  4RJW A;  3HOE A;  1MPF A;  4JCH A;  2K0L A;  2ZFG A;  5DL8 A;  3UU2 A;  3JTY A;  1BH3 A;  4FRT A;  2F1T A;  7PRN A;  1ZHY A;  4FSP A;  3SZD A;  1ZHW A;  3POU A;  1GFO A;  2LHF A;  2YPV A;  4FZN A;  5PRN A;  2J1N A;  2Y7S A;  3SZV A;  3SYS A;  8PRN A;  3LK4 1;  5JDP A;  4AZL A;  4FSO A;  4AYI D;  3DA3 A;  5ADX K;  4JFB A;  4LSI A;  4FT6 A;  5EE2 A;  3SYB A;  1QJ9 A;  2W81 C;  1G90 A;  4AYN A;  2Y2X A;  1Q9G A;  3HW9 A;  4GHB A;  3TZG A;  1QJ8 A;  3V8U A;  5GV0 A;  3VZW X;  2Y0H A;  4QQ1 A;  2XMX A;  2KDY A;  3T0S A;  3G7G A;  3QRC A;  2F1V A;  3FYX A;  5T5F A;  3AA0 A;  4FZL A;  4AKM A;  3HWB A;  1MM5 A;  4AFK A;  3POQ A;  5AFU L;  1BT9 A;  4E1S A;  2POR A;  4LSH A;  2OMF A;  2XE1 A;  2MNH A;  3AA0 B;  4KRA A;  3A2S X;  4LSE A;  3AA6 A;  1GFP A;  4AYM C;  3SY7 A;  1OPF A;  1ZHT A;  1P4T A;  3C5O A;  3PQU A;  4O4X A;  4KR8 A;  2FGR A;  2N2L A;  4RJX A;  4RLC A;  3VZU X;  4GF4 A;  4D5U A;  1ZHZ A;  3LK3 A;  3AA6 B;  3POX A;  4FOZ A;  1QJP A;  1Q9F A;  3SY9 A;  2MHL A;  3UAQ A;  1GFQ A;  3T24 A;  4RLB A;  4AKR A;  3VE2 A;  4XNK A;  2M07 A;  3LK3 B;  4B61 A;  4AYD C;  4C69 X;  5AFU K;  3O0E A;  4G75 A;  4D65 A;  1ZHX A;  2ERV A;  3VY9 X;  4AKR B;  4XNL A;  3DA4 A;  4Z3T A;  2KZ7 A;  1HXU A;  1MM4 A;  4LSF A;  2XG6 A;  1PHO A;  4GCQ A;  4KR4 A;  4GCP A;  4AUI A;  4N58 A;  3LK4 2;  2KZ7 B;  2Y0L A;  2Y0K A;  4GCS A;  3K19 A;  3PRN A;  3AA1 A;  5G26 A;  2M06 A;  1BXW A;  4O3Z A;  6PRN A;  4BUM X;  2XE2 A;  4O3X B;  1IZN A;  2GE4 A;  2PRN A;  3AA1 B;  4FES A;  3HOL A;  4F4B A;  2X27 X;  2XTQ A;  3EMN X;  2KXP A;  5FVN A;  5IYU A;  1IZN B;  2ZLD A;  5ADX L;  3AAA A;  4O4U A;  4D64 A;  1ORM A;  1PRN A;  1GFN A;  4O3Y A;  1THQ A;  2KXP B;  3AA7 A;  3PQS A;  4G76 A;  4PUX A;  5D5D A;  2O4V A;  3VY8 X;  3KVD D;  3AAA B;  3VZT X;  3QRA A;  3GP6 A;  2QTK A;  3AA7 B;  3AAE A;  3POR A;  4FMS A;  2KC0 A;  3VE1 A;  3WI5 A;  3UPG A;  4O3W A;  2JMM A;  3LK2 A;  4FUV A;  2YNK A;  4FZM A;  5DL5 A;  3RBH A;  4E1T A;  3AAE B;  5DL6 A;  4AYE C;  2J4U P;  2ODJ A;  1E54 A;  1YS5 A;  1H6S 1;  2FGQ X;  1GFM A;  3LK2 B;  2K4T A;  2LFU A;  2N2M A;  2XE5 A;  2XE3 A;  2XTR A;  4FRX A;  4N59 A;  3T20 A;  3NSG A;  1HXX A;  1HXT A;  2W80 C;  4RL9 A;  3WI4 A;  5DL7 A;  4U9C A;  1OSM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...