3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
molecule keywords outer membrane protein
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
3UPGA 3VY9X 3SYSA 3SZVA 3POXA 3T24A 4FRXA 4FT6A 4AUIA 2ODJA 4RJXA 4KR4A 2PRNA 7PRNA 4KR8A 3HWBA 2J4UP 3PORA 4D65A 3VZWX 1E54A 2XE3A 1GFNA 1GFPA 1GFQA 2XE2A 2O4VA 2K4TA 4D64A 3PRNA 4FSPA 3SY7A 3VZUX 3WI4A 4LSHA 4JFBA 5DL7A 1GFOA 3O0EA 4KRAA 6PRNA 1OSMA 1MPFA 1PRNA 4LSFA 3JTYA 4BUMX 4RJWA 5DL8A 1H6S1 1BT9A 4LSIA 8PRNA 3POUA 2Y0HA 5DL5A 2XG6A 2ZFGA 2PORA 4FRTA 3POQA 1HXTA 2XE1A 4D5UA 4C69X 3VY8X 5PRNA 5DL6A 5JDPA 3K19A 2Y0LA 3A2SX 1OPFA 2QTKA 3T20A 2FGRA 4FMSA 2Y0KA 3SZDA 2Y2XA 3UU2A 4GCSA 4FSOA 3FYXA 1GFMA 4GCQA 3WI5A 3EMNX 3NSGA 1BH3A 2XE5A 2J1NA 2OMFA 4GCPA 2ZLDA 3T0SA 4LSEA 3HW9A 5FVNA 1PHOA 3SY9A 2FGQX 3VZTX 4FOZA 1HXXA 3SYBA 1HXUA
chains in the Genus database with same CATH superfamily
3UPGA 2MHLA 2XTQA 3VY9X 3SYSA 3LK3B 2AXTO 3SZVA 1Q9GA 2R4NA 3POXA 4IL6O 4FRXA 4FT6A 3T24A 4AUIA 2ODJA 4RJXA 4UB8O 4O49A 3WU2O 5ADXL 4KR4A 2PRNA 7PRNA 1IZNA 1MM5A 4KR8A 2M06A 4RL9A 4F4BA 3LK41 3NJTA 5G38A 3HWBA 2J4UP 3AA0B 2F1CX 4AKRB 3PORA 4GF4A 5G3AA 4D65A 3AA1B 3VZWX 4O3XB 1E54A 5B5EO 2XE3A 2R4OA 1GFNA 3A0HO 5G26A 4PR7A 1GFPA 1BXWA 2WJRA 3PF1A 4AKMA 2R8AA 1GFQA 2XE2A 2O4VA 4O3ZA 2K4TA 3UAQA 3VE2A 2F1TA 2GE4A 5T5FA 4D64A 4E1TA 3AAAA 3PGRA 3PRNA 3QRAA 4FQEA 4FSPA 4JFBA 4LSHA 3SY7A 3VZUX 2W81C 3WI4A 4CTDA 4JCHA 5DL7A 3V8UA 1GFOA 3O0EA 4KRAA 1QJ9A 1QJ8A 4PUXA 1THQA 1OSMA 4FZMA 2KZ7A 2MNHA 3PQUA 4UB6O 5G39A 5IYUA 4AZLA 3BS0A 5KAFO 1MPFA 1PRNA 3QRCA 4LSFA 4FESA 2XTRA 3JTYA 3LK3A 5AFUK 2F1VA 4N59A 5EE2A 4Z3TA 4BUMX 4RJWA 2XMXA 1H6S1 1BT9A 2JQYA 4LSIA 5DL8A 8PRNA 3JCUO 5B66O 1QJPA 3POUA 2KC0A 3AA1A 2YNKA 3DZMA 3KZIO 3PGUA 5ADXK 4O3YA 2Y0HA 4AYMC 5DL5A 3DWOX 2ERVA 2XG6A 2KZ7B 2KXPB 2ZFGA 4FZLA 3GP6A 2PORA 3PQSA 4AYEC 1MM4A 1HXTA 3POQA 4FRTA 4QQ1A 5KAIO 5AFUL 3AAAB 2XE1A 4D5UA 4C69X 1YS5A 4FZNA 3VY8X 5H2FO 5PRNA 5DL6A 5JDPA 3PGSA 3K19A 2Y0LA 3A2SX 3BRYA 4RLCA 4K3CA 4O4UA 3AA6A 4C00A 1OPFA 2QTKA 1ZHWA 3LK2A 3T20A 1ZHYA 2FGRA 4GHBA 2LFUA 2X27X 4FMSA 3AA7B 2Y0KA 6PRNA 3G7GA 2WVPA 4AYID 4PJ0O 3SZDA 2Y2XA 5D5DA 2N2MA 3BRZA 3HOLA 4AFKA 3AAEB 4AYNA 4B61A 1ZHZA 3UU2A 2N2LA 2R88A 4FSOA 4GCSA 3FYXA 1T1LA 3SYBA 4AYDC 4O4XA 1GFMA 2LHFA 3A0BO 3DWNA 4GCQA 2Y7SA 3WI5A 3DA3A 3EMNX 3NSGA 3C5OA 1BH3A 4FUVA 2R4PA 5E79O 2XE5A 1ZHXA 4K3BA 3DA4A 3LK2B 4N75A 2J1NA 3KVDD 4C4VB 1S5LO 2OMFA 3AA0A 3AA6B 4GCPA 2R4LA 4O3WA 5GTHO 4U9CA 4G76A 1Q9FA 1G90A 2ZLDA 3RBHA 4E1SA 2KXPA 4AKRA 4XNLA 2IWVA 4XNKA 3T0SA 2K0LA 4LSEA 1IZNB 3TZGA 3HW9A 3AAEA 4N58A 5FVNA 2IWWA 3HOEA 2X9KA 4C4VA 1PHOA 2R89A 1ZHTA 2W80C 3LK42 2JMMA 5GTIO 5GV0A 1T16A 2YPVA 3SY9A 4RLBA 2FGQX 1P4TA 2KDYA 2M07A 5TISO 3VE1A 4FOZA 1HXXA 3VZTX 4N74A 2WJQA 3AA7A 1ORMA 4G75A 1HXUA
chains in the Genus database with same CATH topology
3UPGA 2MHLA 2XTQA 3VY9X 3SYSA 3LK3B 3SZVA 1Q9GA 3POXA 3T24A 4FRXA 4FT6A 4AUIA 2ODJA 4RJXA 4O49A 5ADXL 4KR4A 2PRNA 7PRNA 1IZNA 1MM5A 4KR8A 2M06A 4RL9A 4F4BA 3LK41 3HWBA 2J4UP 3AA0B 4AKRB 3PORA 4GF4A 4D65A 3AA1B 3VZWX 4O3XB 1E54A 2XE3A 1GFNA 5G26A 1GFPA 1BXWA 4AKMA 1GFQA 2XE2A 2O4VA 4O3ZA 2K4TA 3UAQA 3VE2A 2F1TA 2GE4A 5T5FA 4D64A 4E1TA 3AAAA 3PRNA 4FSPA 3QRAA 3SY7A 4LSHA 4JFBA 3VZUX 3WI4A 2W81C 4JCHA 5DL7A 3V8UA 1GFOA 3O0EA 4KRAA 1QJ9A 1QJ8A 4PUXA 1THQA 1OSMA 4FZMA 2KZ7A 2MNHA 3PQUA 5IYUA 4AZLA 1MPFA 1PRNA 3QRCA 4LSFA 4FESA 2XTRA 3JTYA 3LK3A 5AFUK 2F1VA 4N59A 5EE2A 4Z3TA 4BUMX 4RJWA 2XMXA 1H6S1 1BT9A 4LSIA 5DL8A 8PRNA 1QJPA 3POUA 2KC0A 3AA1A 2YNKA 5ADXK 4O3YA 2Y0HA 4AYMC 5DL5A 2XG6A 2ERVA 2KZ7B 2KXPB 2ZFGA 4FZLA 3GP6A 2PORA 3PQSA 4AYEC 1MM4A 1HXTA 3POQA 4FRTA 4QQ1A 5AFUL 3AAAB 2XE1A 4D5UA 4C69X 1YS5A 4FZNA 3VY8X 5PRNA 5DL6A 5JDPA 3K19A 2Y0LA 3A2SX 4RLCA 4O4UA 3AA6A 1OPFA 2QTKA 1ZHWA 3LK2A 3T20A 1ZHYA 2FGRA 4GHBA 2LFUA 2X27X 4FMSA 3AA7B 2Y0KA 6PRNA 3G7GA 4AYID 3SZDA 2Y2XA 5D5DA 2N2MA 3HOLA 4AFKA 3AAEB 4AYNA 4B61A 1ZHZA 3UU2A 2N2LA 4GCSA 4FSOA 3FYXA 3SYBA 4AYDC 4O4XA 1GFMA 2LHFA 4GCQA 2Y7SA 3WI5A 3DA3A 3EMNX 3NSGA 3C5OA 1BH3A 4FUVA 2XE5A 1ZHXA 3DA4A 3LK2B 2J1NA 3KVDD 2OMFA 3AA0A 3AA6B 4GCPA 4O3WA 4U9CA 4G76A 1Q9FA 1G90A 2ZLDA 3RBHA 4E1SA 2KXPA 4AKRA 4XNLA 4XNKA 3T0SA 2K0LA 4LSEA 1IZNB 3TZGA 3HW9A 3AAEA 4N58A 5FVNA 3HOEA 1PHOA 1ZHTA 2W80C 3LK42 2JMMA 5GV0A 2YPVA 3SY9A 4RLBA 2FGQX 1P4TA 2KDYA 2M07A 3VE1A 3VZTX 4FOZA 1HXXA 3AA7A 1ORMA 4G75A 1HXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UPG A;  3VY9 X;  3SYS A;  3SZV A;  3POX A;  3T24 A;  4FRX A;  4FT6 A;  4AUI A;  2ODJ A;  4RJX A;  4KR4 A;  2PRN A;  7PRN A;  4KR8 A;  3HWB A;  2J4U P;  3POR A;  4D65 A;  3VZW X;  1E54 A;  2XE3 A;  1GFN A;  1GFP A;  1GFQ A;  2XE2 A;  2O4V A;  2K4T A;  4D64 A;  3PRN A;  4FSP A;  3SY7 A;  3VZU X;  3WI4 A;  4LSH A;  4JFB A;  5DL7 A;  1GFO A;  3O0E A;  4KRA A;  6PRN A;  1OSM A;  1MPF A;  1PRN A;  4LSF A;  3JTY A;  4BUM X;  4RJW A;  5DL8 A;  1H6S 1;  1BT9 A;  4LSI A;  8PRN A;  3POU A;  2Y0H A;  5DL5 A;  2XG6 A;  2ZFG A;  2POR A;  4FRT A;  3POQ A;  1HXT A;  2XE1 A;  4D5U A;  4C69 X;  3VY8 X;  5PRN A;  5DL6 A;  5JDP A;  3K19 A;  2Y0L A;  3A2S X;  1OPF A;  2QTK A;  3T20 A;  2FGR A;  4FMS A;  2Y0K A;  3SZD A;  2Y2X A;  3UU2 A;  4GCS A;  4FSO A;  3FYX A;  1GFM A;  4GCQ A;  3WI5 A;  3EMN X;  3NSG A;  1BH3 A;  2XE5 A;  2J1N A;  2OMF A;  4GCP A;  2ZLD A;  3T0S A;  4LSE A;  3HW9 A;  5FVN A;  1PHO A;  3SY9 A;  2FGQ X;  3VZT X;  4FOZ A;  1HXX A;  3SYB A;  1HXU A; 
#chains in the Genus database with same CATH topology
 3UPG A;  2MHL A;  2XTQ A;  3VY9 X;  3SYS A;  3LK3 B;  2AXT O;  3SZV A;  1Q9G A;  2R4N A;  3POX A;  4IL6 O;  4FRX A;  4FT6 A;  3T24 A;  4AUI A;  2ODJ A;  4RJX A;  4UB8 O;  4O49 A;  3WU2 O;  5ADX L;  4KR4 A;  2PRN A;  7PRN A;  1IZN A;  1MM5 A;  4KR8 A;  2M06 A;  4RL9 A;  4F4B A;  3LK4 1;  3NJT A;  5G38 A;  3HWB A;  2J4U P;  3AA0 B;  2F1C X;  4AKR B;  3POR A;  4GF4 A;  5G3A A;  4D65 A;  3AA1 B;  3VZW X;  4O3X B;  1E54 A;  5B5E O;  2XE3 A;  2R4O A;  1GFN A;  3A0H O;  5G26 A;  4PR7 A;  1GFP A;  1BXW A;  2WJR A;  3PF1 A;  4AKM A;  2R8A A;  1GFQ A;  2XE2 A;  2O4V A;  4O3Z A;  2K4T A;  3UAQ A;  3VE2 A;  2F1T A;  2GE4 A;  5T5F A;  4D64 A;  4E1T A;  3AAA A;  3PGR A;  3PRN A;  3QRA A;  4FQE A;  4FSP A;  4JFB A;  4LSH A;  3SY7 A;  3VZU X;  2W81 C;  3WI4 A;  4CTD A;  4JCH A;  5DL7 A;  3V8U A;  1GFO A;  3O0E A;  4KRA A;  1QJ9 A;  1QJ8 A;  4PUX A;  1THQ A;  1OSM A;  4FZM A;  2KZ7 A;  2MNH A;  3PQU A;  4UB6 O;  5G39 A;  5IYU A;  4AZL A;  3BS0 A;  5KAF O;  1MPF A;  1PRN A;  3QRC A;  4LSF A;  4FES A;  2XTR A;  3JTY A;  3LK3 A;  5AFU K;  2F1V A;  4N59 A;  5EE2 A;  4Z3T A;  4BUM X;  4RJW A;  2XMX A;  1H6S 1;  1BT9 A;  2JQY A;  4LSI A;  5DL8 A;  8PRN A;  3JCU O;  5B66 O;  1QJP A;  3POU A;  2KC0 A;  3AA1 A;  2YNK A;  3DZM A;  3KZI O;  3PGU A;  5ADX K;  4O3Y A;  2Y0H A;  4AYM C;  5DL5 A;  3DWO X;  2ERV A;  2XG6 A;  2KZ7 B;  2KXP B;  2ZFG A;  4FZL A;  3GP6 A;  2POR A;  3PQS A;  4AYE C;  1MM4 A;  1HXT A;  3POQ A;  4FRT A;  4QQ1 A;  5KAI O;  5AFU L;  3AAA B;  2XE1 A;  4D5U A;  4C69 X;  1YS5 A;  4FZN A;  3VY8 X;  5H2F O;  5PRN A;  5DL6 A;  5JDP A;  3PGS A;  3K19 A;  2Y0L A;  3A2S X;  3BRY A;  4RLC A;  4K3C A;  4O4U A;  3AA6 A;  4C00 A;  1OPF A;  2QTK A;  1ZHW A;  3LK2 A;  3T20 A;  1ZHY A;  2FGR A;  4GHB A;  2LFU A;  2X27 X;  4FMS A;  3AA7 B;  2Y0K A;  6PRN A;  3G7G A;  2WVP A;  4AYI D;  4PJ0 O;  3SZD A;  2Y2X A;  5D5D A;  2N2M A;  3BRZ A;  3HOL A;  4AFK A;  3AAE B;  4AYN A;  4B61 A;  1ZHZ A;  3UU2 A;  2N2L A;  2R88 A;  4FSO A;  4GCS A;  3FYX A;  1T1L A;  3SYB A;  4AYD C;  4O4X A;  1GFM A;  2LHF A;  3A0B O;  3DWN A;  4GCQ A;  2Y7S A;  3WI5 A;  3DA3 A;  3EMN X;  3NSG A;  3C5O A;  1BH3 A;  4FUV A;  2R4P A;  5E79 O;  2XE5 A;  1ZHX A;  4K3B A;  3DA4 A;  3LK2 B;  4N75 A;  2J1N A;  3KVD D;  4C4V B;  1S5L O;  2OMF A;  3AA0 A;  3AA6 B;  4GCP A;  2R4L A;  4O3W A;  5GTH O;  4U9C A;  4G76 A;  1Q9F A;  1G90 A;  2ZLD A;  3RBH A;  4E1S A;  2KXP A;  4AKR A;  4XNL A;  2IWV A;  4XNK A;  3T0S A;  2K0L A;  4LSE A;  1IZN B;  3TZG A;  3HW9 A;  3AAE A;  4N58 A;  5FVN A;  2IWW A;  3HOE A;  2X9K A;  4C4V A;  1PHO A;  2R89 A;  1ZHT A;  2W80 C;  3LK4 2;  2JMM A;  5GTI O;  5GV0 A;  1T16 A;  2YPV A;  3SY9 A;  4RLB A;  2FGQ X;  1P4T A;  2KDY A;  2M07 A;  5TIS O;  3VE1 A;  4FOZ A;  1HXX A;  3VZT X;  4N74 A;  2WJQ A;  3AA7 A;  1ORM A;  4G75 A;  1HXU A; 
#chains in the Genus database with same CATH homology
 3UPG A;  2MHL A;  2XTQ A;  3VY9 X;  3SYS A;  3LK3 B;  3SZV A;  1Q9G A;  3POX A;  3T24 A;  4FRX A;  4FT6 A;  4AUI A;  2ODJ A;  4RJX A;  4O49 A;  5ADX L;  4KR4 A;  2PRN A;  7PRN A;  1IZN A;  1MM5 A;  4KR8 A;  2M06 A;  4RL9 A;  4F4B A;  3LK4 1;  3HWB A;  2J4U P;  3AA0 B;  4AKR B;  3POR A;  4GF4 A;  4D65 A;  3AA1 B;  3VZW X;  4O3X B;  1E54 A;  2XE3 A;  1GFN A;  5G26 A;  1GFP A;  1BXW A;  4AKM A;  1GFQ A;  2XE2 A;  2O4V A;  4O3Z A;  2K4T A;  3UAQ A;  3VE2 A;  2F1T A;  2GE4 A;  5T5F A;  4D64 A;  4E1T A;  3AAA A;  3PRN A;  4FSP A;  3QRA A;  3SY7 A;  4LSH A;  4JFB A;  3VZU X;  3WI4 A;  2W81 C;  4JCH A;  5DL7 A;  3V8U A;  1GFO A;  3O0E A;  4KRA A;  1QJ9 A;  1QJ8 A;  4PUX A;  1THQ A;  1OSM A;  4FZM A;  2KZ7 A;  2MNH A;  3PQU A;  5IYU A;  4AZL A;  1MPF A;  1PRN A;  3QRC A;  4LSF A;  4FES A;  2XTR A;  3JTY A;  3LK3 A;  5AFU K;  2F1V A;  4N59 A;  5EE2 A;  4Z3T A;  4BUM X;  4RJW A;  2XMX A;  1H6S 1;  1BT9 A;  4LSI A;  5DL8 A;  8PRN A;  1QJP A;  3POU A;  2KC0 A;  3AA1 A;  2YNK A;  5ADX K;  4O3Y A;  2Y0H A;  4AYM C;  5DL5 A;  2XG6 A;  2ERV A;  2KZ7 B;  2KXP B;  2ZFG A;  4FZL A;  3GP6 A;  2POR A;  3PQS A;  4AYE C;  1MM4 A;  1HXT A;  3POQ A;  4FRT A;  4QQ1 A;  5AFU L;  3AAA B;  2XE1 A;  4D5U A;  4C69 X;  1YS5 A;  4FZN A;  3VY8 X;  5PRN A;  5DL6 A;  5JDP A;  3K19 A;  2Y0L A;  3A2S X;  4RLC A;  4O4U A;  3AA6 A;  1OPF A;  2QTK A;  1ZHW A;  3LK2 A;  3T20 A;  1ZHY A;  2FGR A;  4GHB A;  2LFU A;  2X27 X;  4FMS A;  3AA7 B;  2Y0K A;  6PRN A;  3G7G A;  4AYI D;  3SZD A;  2Y2X A;  5D5D A;  2N2M A;  3HOL A;  4AFK A;  3AAE B;  4AYN A;  4B61 A;  1ZHZ A;  3UU2 A;  2N2L A;  4GCS A;  4FSO A;  3FYX A;  3SYB A;  4AYD C;  4O4X A;  1GFM A;  2LHF A;  4GCQ A;  2Y7S A;  3WI5 A;  3DA3 A;  3EMN X;  3NSG A;  3C5O A;  1BH3 A;  4FUV A;  2XE5 A;  1ZHX A;  3DA4 A;  3LK2 B;  2J1N A;  3KVD D;  2OMF A;  3AA0 A;  3AA6 B;  4GCP A;  4O3W A;  4U9C A;  4G76 A;  1Q9F A;  1G90 A;  2ZLD A;  3RBH A;  4E1S A;  2KXP A;  4AKR A;  4XNL A;  4XNK A;  3T0S A;  2K0L A;  4LSE A;  1IZN B;  3TZG A;  3HW9 A;  3AAE A;  4N58 A;  5FVN A;  3HOE A;  1PHO A;  1ZHT A;  2W80 C;  3LK4 2;  2JMM A;  5GV0 A;  2YPV A;  3SY9 A;  4RLB A;  2FGQ X;  1P4T A;  2KDY A;  2M07 A;  3VE1 A;  3VZT X;  4FOZ A;  1HXX A;  3AA7 A;  1ORM A;  4G75 A;  1HXU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...