3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
molecule keywords outer membrane protein
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
2XE5A 3POQA 1HXXA 1GFMA 3NSGA 3SYSA 3VY8X 5DL6A 4D64A 2FGRA 2ZFGA 3HWBA 4LSFA 3VZUX 2ZLDA 4KR8A 4FT6A 4RJXA 4FRTA 4AUIA 4FMSA 3T20A 1OPFA 2O4VA 4FSPA 5JDPA 2Y0HA 3SYBA 2ODJA 2XE2A 2J1NA 3VZTX 5PRNA 3O0EA 3POXA 3SZVA 2Y0LA 3UPGA 3UU2A 4BUMX 7PRNA 1HXUA 2OMFA 4RJWA 3T0SA 3JTYA 8PRNA 4C69X 4FSOA 1MPFA 4GCSA 3HW9A 4LSIA 1BH3A 2FGQX 3FYXA 1GFNA 1OSMA 1BT9A 3EMNX 4GCQA 3SZDA 5FVNA 2PORA 2Y2XA 3PORA 5DL7A 5DL8A 4GCPA 3SY9A 3A2SX 1E54A 4LSHA 3K19A 2Y0KA 3WI5A 4KRAA 4FOZA 1PHOA 3T24A 4KR4A 2K4TA 3WI4A 3SY7A 1GFPA 1GFOA 3VZWX 1HXTA 4D65A 1H6S1 2J4UP 3VY9X 2XG6A 4JFBA 1PRNA 4D5UA 4LSEA 3PRNA 2XE3A 1GFQA 4FRXA 2XE1A 6PRNA 2PRNA 2QTKA 3POUA 5DL5A
chains in the Genus database with same CATH superfamily
2XE5A 4RLBA 1ZHYA 3POQA 1T16A 1HXXA 2R8AA 2F1TA 4XNLA 2F1CX 4C4VB 3BRYA 4N59A 3WU2O 1GFMA 4F4BA 2X27X 3AAAA 3NSGA 3SYSA 3VY8X 2Y7SA 5DL6A 4D64A 2FGRA 3AA0B 2R4NA 2ZFGA 5EE2A 3AAAB 2WJRA 3AA7B 3HWBA 5AFUL 4G75A 3DA3A 4LSFA 3VZUX 3PQSA 3PGSA 2KC0A 2ZLDA 3AA6B 3AA7A 4UB8O 3PF1A 4KR8A 5GTIO 5B66O 4FT6A 1IZNA 4RJXA 4B61A 4FRTA 1THQA 3PQUA 4AUIA 3VE1A 4FMSA 3T20A 1OPFA 4K3BA 4O3ZA 2O4VA 3JCUO 4FSPA 1MM4A 2R4PA 5JDPA 5G39A 3LK2B 4PUXA 3V8UA 1S5LO 2Y0HA 5G3AA 3SYBA 1Q9FA 2ODJA 2XE2A 2J1NA 4RLCA 3KZIO 2KXPB 4U9CA 5G26A 3C5OA 5PRNA 2M07A 4G76A 3O0EA 2MHLA 3POXA 3HOLA 2Y0LA 4XNKA 3SZVA 4AZLA 3UPGA 3UU2A 4O4UA 4BUMX 2IWVA 4C00A 3LK41 4C4VA 3UAQA 5G38A 3LK3B 4FZNA 4PJ0O 7PRNA 4AYNA 1HXUA 2R4OA 2OMFA 4N74A 4RJWA 4PR7A 3T0SA 3PGRA 3JTYA 8PRNA 1QJ9A 3BS0A 3DWOX 5GTHO 4O3XB 4C69X 2R89A 4FSOA 3KVDD 4IL6O 3TZGA 4Z3TA 1MPFA 2WJQA 5B5EO 4AYDC 4GCSA 3VZTX 3HW9A 4LSIA 1BH3A 1ORMA 2FGQX 1T1LA 2LHFA 3FYXA 4FUVA 5T5FA 4UB6O 3AA6A 1GFNA 3AAEB 2GE4A 3LK2A 1OSMA 1BT9A 2LFUA 2XMXA 3EMNX 5IYUA 4QQ1A 3LK42 5ADXL 4GCQA 3SZDA 5FVNA 2N2LA 5AFUK 2KZ7B 5D5DA 2PORA 2Y2XA 3AA1A 3PORA 2WVPA 3AA0A 4GF4A 5DL7A 1G90A 5DL8A 4FQEA 4GCPA 5H2FO 2W81C 4N75A 3SY9A 4E1TA 5KAFO 3A2SX 4FZLA 2X9KA 3HOEA 2AXTO 3BRZA 1E54A 5TISO 3PGUA 4LSHA 4E1SA 1QJ8A 3K19A 2Y0KA 3WI5A 4AKMA 4KRAA 2KDYA 3DA4A 1IZNB 2F1VA 2R4LA 3QRCA 4FOZA 5KAIO 1PHOA 3NJTA 3T24A 4CTDA 2K4TA 4KR4A 1BXWA 2KXPA 3SY7A 1GFPA 2M06A 3WI4A 5ADXK 1GFOA 1ZHXA 1QJPA 2XTQA 3VZWX 1HXTA 4AKRA 4FZMA 4D65A 1H6S1 4GHBA 4K3CA 1ZHTA 2K0LA 1Q9GA 2J4UP 4O3YA 3AAEA 2JMMA 4AYMC 3DWNA 4O49A 2W80C 3A0BO 3VY9X 3QRAA 2ERVA 2YNKA 3G7GA 4RL9A 2XG6A 2JQYA 3DZMA 4JFBA 4N58A 4O4XA 1PRNA 4AYEC 4AYID 3RBHA 4D5UA 4LSEA 4FESA 3AA1B 3PRNA 2N2MA 2KZ7A 2R88A 1YS5A 2MNHA 2XE3A 5E79O 4AKRB 1ZHWA 4JCHA 1MM5A 1GFQA 1ZHZA 2XTRA 3A0HO 3LK3A 4FRXA 3VE2A 2XE1A 4O3WA 2IWWA 6PRNA 2YPVA 4AFKA 2PRNA 3GP6A 2QTKA 3POUA 5DL5A 1P4TA 5GV0A
chains in the Genus database with same CATH topology
2XE5A 4RLBA 1ZHYA 3POQA 1HXXA 2F1TA 4XNLA 4N59A 1GFMA 4F4BA 2X27X 3AAAA 3NSGA 3SYSA 3VY8X 2Y7SA 5DL6A 4D64A 2FGRA 3AA0B 2ZFGA 5EE2A 3AAAB 3AA7B 3HWBA 5AFUL 4G75A 3DA3A 4LSFA 3VZUX 3PQSA 2KC0A 2ZLDA 3AA6B 3AA7A 4KR8A 4FT6A 1IZNA 4RJXA 4B61A 4FRTA 1THQA 3PQUA 4AUIA 3VE1A 4FMSA 3T20A 1OPFA 4O3ZA 2O4VA 4FSPA 5JDPA 1MM4A 3LK2B 4PUXA 3V8UA 2Y0HA 3SYBA 1Q9FA 2ODJA 2XE2A 2J1NA 4RLCA 4U9CA 2KXPB 5G26A 3VZTX 3C5OA 5PRNA 2M07A 4G76A 3O0EA 2MHLA 3POXA 3HOLA 2Y0LA 4XNKA 3SZVA 4AZLA 3UPGA 3UU2A 4O4UA 4BUMX 3LK41 3UAQA 3LK3B 4FZNA 7PRNA 4AYNA 1HXUA 2OMFA 4RJWA 3T0SA 3JTYA 8PRNA 1QJ9A 4O3XB 4C69X 4FSOA 3KVDD 4Z3TA 3TZGA 1MPFA 4AYDC 4GCSA 3HW9A 4LSIA 1BH3A 1ORMA 2FGQX 2LHFA 3FYXA 4FUVA 5T5FA 3AA6A 1GFNA 3AAEB 2GE4A 3LK2A 1OSMA 1BT9A 2LFUA 2XMXA 3EMNX 5IYUA 4QQ1A 3LK42 5ADXL 4GCQA 3SZDA 5FVNA 2N2LA 5AFUK 2KZ7B 5D5DA 2PORA 2Y2XA 3AA1A 3PORA 4GF4A 3AA0A 5DL7A 1G90A 5DL8A 4GCPA 2W81C 3SY9A 4E1TA 3A2SX 4FZLA 3HOEA 1E54A 4LSHA 4E1SA 1QJ8A 3K19A 2Y0KA 3WI5A 4AKMA 4KRAA 2KDYA 3DA4A 1IZNB 2F1VA 3QRCA 4FOZA 1PHOA 3T24A 2K4TA 4KR4A 1BXWA 2KXPA 3SY7A 1GFPA 2M06A 3WI4A 5ADXK 1GFOA 1ZHXA 1QJPA 2XTQA 3VZWX 1HXTA 4AKRA 4FZMA 4D65A 1H6S1 4GHBA 1ZHTA 2K0LA 1Q9GA 2J4UP 4O3YA 3AAEA 2JMMA 4AYMC 4O49A 2W80C 3VY9X 3QRAA 2ERVA 2YNKA 3G7GA 4RL9A 2XG6A 4JFBA 4N58A 4AYEC 4O4XA 1PRNA 4AYID 3RBHA 4D5UA 4LSEA 4FESA 3AA1B 3PRNA 2N2MA 2KZ7A 1YS5A 2MNHA 2XE3A 4AKRB 1ZHWA 4JCHA 1MM5A 1GFQA 1ZHZA 2XTRA 4FRXA 3LK3A 3VE2A 2XE1A 4O3WA 6PRNA 2YPVA 4AFKA 2PRNA 3GP6A 2QTKA 3POUA 5DL5A 1P4TA 5GV0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE5 A;  3POQ A;  1HXX A;  1GFM A;  3NSG A;  3SYS A;  3VY8 X;  5DL6 A;  4D64 A;  2FGR A;  2ZFG A;  3HWB A;  4LSF A;  3VZU X;  2ZLD A;  4KR8 A;  4FT6 A;  4RJX A;  4FRT A;  4AUI A;  4FMS A;  3T20 A;  1OPF A;  2O4V A;  4FSP A;  5JDP A;  2Y0H A;  3SYB A;  2ODJ A;  2XE2 A;  2J1N A;  3VZT X;  5PRN A;  3O0E A;  3POX A;  3SZV A;  2Y0L A;  3UPG A;  3UU2 A;  4BUM X;  7PRN A;  1HXU A;  2OMF A;  4RJW A;  3T0S A;  3JTY A;  8PRN A;  4C69 X;  4FSO A;  1MPF A;  4GCS A;  3HW9 A;  4LSI A;  1BH3 A;  2FGQ X;  3FYX A;  1GFN A;  1OSM A;  1BT9 A;  3EMN X;  4GCQ A;  3SZD A;  5FVN A;  2POR A;  2Y2X A;  3POR A;  5DL7 A;  5DL8 A;  4GCP A;  3SY9 A;  3A2S X;  1E54 A;  4LSH A;  3K19 A;  2Y0K A;  3WI5 A;  4KRA A;  4FOZ A;  1PHO A;  3T24 A;  4KR4 A;  2K4T A;  3WI4 A;  3SY7 A;  1GFP A;  1GFO A;  3VZW X;  1HXT A;  4D65 A;  1H6S 1;  2J4U P;  3VY9 X;  2XG6 A;  4JFB A;  1PRN A;  4D5U A;  4LSE A;  3PRN A;  2XE3 A;  1GFQ A;  4FRX A;  2XE1 A;  6PRN A;  2PRN A;  2QTK A;  3POU A;  5DL5 A; 
#chains in the Genus database with same CATH topology
 2XE5 A;  4RLB A;  1ZHY A;  3POQ A;  1T16 A;  1HXX A;  2R8A A;  2F1T A;  4XNL A;  2F1C X;  4C4V B;  3BRY A;  4N59 A;  3WU2 O;  1GFM A;  4F4B A;  2X27 X;  3AAA A;  3NSG A;  3SYS A;  3VY8 X;  2Y7S A;  5DL6 A;  4D64 A;  2FGR A;  3AA0 B;  2R4N A;  2ZFG A;  5EE2 A;  3AAA B;  2WJR A;  3AA7 B;  3HWB A;  5AFU L;  4G75 A;  3DA3 A;  4LSF A;  3VZU X;  3PQS A;  3PGS A;  2KC0 A;  2ZLD A;  3AA6 B;  3AA7 A;  4UB8 O;  3PF1 A;  4KR8 A;  5GTI O;  5B66 O;  4FT6 A;  1IZN A;  4RJX A;  4B61 A;  4FRT A;  1THQ A;  3PQU A;  4AUI A;  3VE1 A;  4FMS A;  3T20 A;  1OPF A;  4K3B A;  4O3Z A;  2O4V A;  3JCU O;  4FSP A;  1MM4 A;  2R4P A;  5JDP A;  5G39 A;  3LK2 B;  4PUX A;  3V8U A;  1S5L O;  2Y0H A;  5G3A A;  3SYB A;  1Q9F A;  2ODJ A;  2XE2 A;  2J1N A;  4RLC A;  3KZI O;  2KXP B;  4U9C A;  5G26 A;  3C5O A;  5PRN A;  2M07 A;  4G76 A;  3O0E A;  2MHL A;  3POX A;  3HOL A;  2Y0L A;  4XNK A;  3SZV A;  4AZL A;  3UPG A;  3UU2 A;  4O4U A;  4BUM X;  2IWV A;  4C00 A;  3LK4 1;  4C4V A;  3UAQ A;  5G38 A;  3LK3 B;  4FZN A;  4PJ0 O;  7PRN A;  4AYN A;  1HXU A;  2R4O A;  2OMF A;  4N74 A;  4RJW A;  4PR7 A;  3T0S A;  3PGR A;  3JTY A;  8PRN A;  1QJ9 A;  3BS0 A;  3DWO X;  5GTH O;  4O3X B;  4C69 X;  2R89 A;  4FSO A;  3KVD D;  4IL6 O;  3TZG A;  4Z3T A;  1MPF A;  2WJQ A;  5B5E O;  4AYD C;  4GCS A;  3VZT X;  3HW9 A;  4LSI A;  1BH3 A;  1ORM A;  2FGQ X;  1T1L A;  2LHF A;  3FYX A;  4FUV A;  5T5F A;  4UB6 O;  3AA6 A;  1GFN A;  3AAE B;  2GE4 A;  3LK2 A;  1OSM A;  1BT9 A;  2LFU A;  2XMX A;  3EMN X;  5IYU A;  4QQ1 A;  3LK4 2;  5ADX L;  4GCQ A;  3SZD A;  5FVN A;  2N2L A;  5AFU K;  2KZ7 B;  5D5D A;  2POR A;  2Y2X A;  3AA1 A;  3POR A;  2WVP A;  3AA0 A;  4GF4 A;  5DL7 A;  1G90 A;  5DL8 A;  4FQE A;  4GCP A;  5H2F O;  2W81 C;  4N75 A;  3SY9 A;  4E1T A;  5KAF O;  3A2S X;  4FZL A;  2X9K A;  3HOE A;  2AXT O;  3BRZ A;  1E54 A;  5TIS O;  3PGU A;  4LSH A;  4E1S A;  1QJ8 A;  3K19 A;  2Y0K A;  3WI5 A;  4AKM A;  4KRA A;  2KDY A;  3DA4 A;  1IZN B;  2F1V A;  2R4L A;  3QRC A;  4FOZ A;  5KAI O;  1PHO A;  3NJT A;  3T24 A;  4CTD A;  2K4T A;  4KR4 A;  1BXW A;  2KXP A;  3SY7 A;  1GFP A;  2M06 A;  3WI4 A;  5ADX K;  1GFO A;  1ZHX A;  1QJP A;  2XTQ A;  3VZW X;  1HXT A;  4AKR A;  4FZM A;  4D65 A;  1H6S 1;  4GHB A;  4K3C A;  1ZHT A;  2K0L A;  1Q9G A;  2J4U P;  4O3Y A;  3AAE A;  2JMM A;  4AYM C;  3DWN A;  4O49 A;  2W80 C;  3A0B O;  3VY9 X;  3QRA A;  2ERV A;  2YNK A;  3G7G A;  4RL9 A;  2XG6 A;  2JQY A;  3DZM A;  4JFB A;  4N58 A;  4O4X A;  1PRN A;  4AYE C;  4AYI D;  3RBH A;  4D5U A;  4LSE A;  4FES A;  3AA1 B;  3PRN A;  2N2M A;  2KZ7 A;  2R88 A;  1YS5 A;  2MNH A;  2XE3 A;  5E79 O;  4AKR B;  1ZHW A;  4JCH A;  1MM5 A;  1GFQ A;  1ZHZ A;  2XTR A;  3A0H O;  3LK3 A;  4FRX A;  3VE2 A;  2XE1 A;  4O3W A;  2IWW A;  6PRN A;  2YPV A;  4AFK A;  2PRN A;  3GP6 A;  2QTK A;  3POU A;  5DL5 A;  1P4T A;  5GV0 A; 
#chains in the Genus database with same CATH homology
 2XE5 A;  4RLB A;  1ZHY A;  3POQ A;  1HXX A;  2F1T A;  4XNL A;  4N59 A;  1GFM A;  4F4B A;  2X27 X;  3AAA A;  3NSG A;  3SYS A;  3VY8 X;  2Y7S A;  5DL6 A;  4D64 A;  2FGR A;  3AA0 B;  2ZFG A;  5EE2 A;  3AAA B;  3AA7 B;  3HWB A;  5AFU L;  4G75 A;  3DA3 A;  4LSF A;  3VZU X;  3PQS A;  2KC0 A;  2ZLD A;  3AA6 B;  3AA7 A;  4KR8 A;  4FT6 A;  1IZN A;  4RJX A;  4B61 A;  4FRT A;  1THQ A;  3PQU A;  4AUI A;  3VE1 A;  4FMS A;  3T20 A;  1OPF A;  4O3Z A;  2O4V A;  4FSP A;  5JDP A;  1MM4 A;  3LK2 B;  4PUX A;  3V8U A;  2Y0H A;  3SYB A;  1Q9F A;  2ODJ A;  2XE2 A;  2J1N A;  4RLC A;  4U9C A;  2KXP B;  5G26 A;  3VZT X;  3C5O A;  5PRN A;  2M07 A;  4G76 A;  3O0E A;  2MHL A;  3POX A;  3HOL A;  2Y0L A;  4XNK A;  3SZV A;  4AZL A;  3UPG A;  3UU2 A;  4O4U A;  4BUM X;  3LK4 1;  3UAQ A;  3LK3 B;  4FZN A;  7PRN A;  4AYN A;  1HXU A;  2OMF A;  4RJW A;  3T0S A;  3JTY A;  8PRN A;  1QJ9 A;  4O3X B;  4C69 X;  4FSO A;  3KVD D;  4Z3T A;  3TZG A;  1MPF A;  4AYD C;  4GCS A;  3HW9 A;  4LSI A;  1BH3 A;  1ORM A;  2FGQ X;  2LHF A;  3FYX A;  4FUV A;  5T5F A;  3AA6 A;  1GFN A;  3AAE B;  2GE4 A;  3LK2 A;  1OSM A;  1BT9 A;  2LFU A;  2XMX A;  3EMN X;  5IYU A;  4QQ1 A;  3LK4 2;  5ADX L;  4GCQ A;  3SZD A;  5FVN A;  2N2L A;  5AFU K;  2KZ7 B;  5D5D A;  2POR A;  2Y2X A;  3AA1 A;  3POR A;  4GF4 A;  3AA0 A;  5DL7 A;  1G90 A;  5DL8 A;  4GCP A;  2W81 C;  3SY9 A;  4E1T A;  3A2S X;  4FZL A;  3HOE A;  1E54 A;  4LSH A;  4E1S A;  1QJ8 A;  3K19 A;  2Y0K A;  3WI5 A;  4AKM A;  4KRA A;  2KDY A;  3DA4 A;  1IZN B;  2F1V A;  3QRC A;  4FOZ A;  1PHO A;  3T24 A;  2K4T A;  4KR4 A;  1BXW A;  2KXP A;  3SY7 A;  1GFP A;  2M06 A;  3WI4 A;  5ADX K;  1GFO A;  1ZHX A;  1QJP A;  2XTQ A;  3VZW X;  1HXT A;  4AKR A;  4FZM A;  4D65 A;  1H6S 1;  4GHB A;  1ZHT A;  2K0L A;  1Q9G A;  2J4U P;  4O3Y A;  3AAE A;  2JMM A;  4AYM C;  4O49 A;  2W80 C;  3VY9 X;  3QRA A;  2ERV A;  2YNK A;  3G7G A;  4RL9 A;  2XG6 A;  4JFB A;  4N58 A;  4AYE C;  4O4X A;  1PRN A;  4AYI D;  3RBH A;  4D5U A;  4LSE A;  4FES A;  3AA1 B;  3PRN A;  2N2M A;  2KZ7 A;  1YS5 A;  2MNH A;  2XE3 A;  4AKR B;  1ZHW A;  4JCH A;  1MM5 A;  1GFQ A;  1ZHZ A;  2XTR A;  4FRX A;  3LK3 A;  3VE2 A;  2XE1 A;  4O3W A;  6PRN A;  2YPV A;  4AFK A;  2PRN A;  3GP6 A;  2QTK A;  3POU A;  5DL5 A;  1P4T A;  5GV0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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