3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
2XE3A 4LSIA 1GFMA 4C69X 2Y0HA 5DL8A 4KRAA 5DL6A 4FOZA 4D65A 3WI5A 3PORA 2K4TA 3O0EA 2J1NA 3VZWX 4RJWA 6PRNA 4FSPA 4GCQA 3SY9A 3A2SX 3HW9A 3JTYA 1HXUA 4LSEA 3T24A 2FGRA 1GFOA 2Y2XA 4FMSA 2Y0LA 5JDPA 3WI4A 3FYXA 1PRNA 4FRTA 3POQA 1PHOA 3VZTX 3PRNA 2ODJA 3UPGA 4FT6A 2XE1A 1HXXA 2XE5A 1H6S1 2PRNA 4KR4A 2ZFGA 4FSOA 1OSMA 2QTKA 2ZLDA 1MPFA 3VY9X 4AUIA 1GFPA 4LSHA 2PORA 3T0SA 1HXTA 1BH3A 1BT9A 3POUA 5DL5A 3SYSA 4JFBA 3EMNX 2Y0KA 2J4UP 4LSFA 5FVNA 1OPFA 3HWBA 1GFQA 4GCPA 4BUMX 3VY8X 3T20A 5DL7A 4D64A 8PRNA 3SY7A 4D5UA 7PRNA 3NSGA 5PRNA 3UU2A 4RJXA 3K19A 4FRXA 2XG6A 3SZVA 2OMFA 3SZDA 4KR8A 4GCSA 3SYBA 1E54A 3VZUX 2FGQX 1GFNA 2O4VA 3POXA 2XE2A
chains in the Genus database with same CATH superfamily
4G75A 1ZHWA 1ZHZA 2F1CX 4K3CA 3V8UA 4B61A 2XE3A 3DA3A 4LSIA 1Q9GA 1GFMA 1YS5A 3AA7B 2K0LA 2MNHA 3PGRA 3PQSA 2Y0HA 4C69X 1P4TA 5GTIO 5DL8A 1G90A 3QRCA 2N2LA 4KRAA 4N74A 2R89A 1QJPA 4FOZA 5DL6A 3WI5A 3PORA 4D65A 2AXTO 3BRZA 4N59A 4AYNA 3LK2A 1QJ9A 4O3ZA 5EE2A 4RLBA 2K4TA 3O0EA 3VE2A 2J1NA 2KDYA 3VZWX 4RJWA 4O3WA 6PRNA 2XTQA 3NJTA 4FSPA 4GCQA 1ZHXA 3A0HO 5G3AA 3A2SX 3SY9A 2W80C 3HW9A 3JTYA 3PQUA 2JQYA 3HOLA 4FZLA 1HXUA 2Y7SA 4N75A 3AA1B 1T1LA 2IWVA 4LSEA 3AAEA 3T24A 2FGRA 2ERVA 1GFOA 5AFUK 4C4VA 2X27X 3LK41 2IWWA 2M07A 2X9KA 2Y2XA 5TISO 4RLCA 4FMSA 1MM5A 2Y0LA 4G76A 5JDPA 4AYEC 3WI4A 3FYXA 1PRNA 4FRTA 3POQA 4JCHA 4AFKA 1PHOA 4AKRB 3VZTX 3PRNA 2KZ7A 3AAAA 3AA0B 2ODJA 1IZNA 4RL9A 1ZHTA 3PGSA 4QQ1A 5E79O 5G38A 4AZLA 4GHBA 3UPGA 3LK3A 4XNLA 5B5EO 4FT6A 1S5LO 3RBHA 2XE1A 2XTRA 2MHLA 3WU2O 1HXXA 2XE5A 1H6S1 3DWOX 2R8AA 4FESA 2PRNA 4KR4A 4AKMA 2ZFGA 4FSOA 3PGUA 2LFUA 4AYMC 3LK2B 1OSMA 2QTKA 2KXPA 4E1TA 2ZLDA 1MPFA 3QRAA 2YPVA 3VY9X 2XMXA 2WJRA 4AUIA 5GTHO 2N2MA 5IYUA 1GFPA 2M06A 4AYID 4O49A 4LSHA 4N58A 4Z3TA 2PORA 4UB6O 3T0SA 4FQEA 3AA6A 2WJQA 1HXTA 3AAEB 3BS0A 1BH3A 4F4BA 5ADXL 3UAQA 2R4LA 5B66O 4C4VB 4PJ0O 1BT9A 4GF4A 3LK42 4O3XB 2GE4A 3POUA 5DL5A 3SYSA 5G39A 4JFBA 4CTDA 3EMNX 2F1TA 2Y0KA 2JMMA 2J4UP 4LSFA 5FVNA 4IL6O 3DZMA 4E1SA 1OPFA 3AA7A 2F1VA 4O4XA 5G26A 2KZ7B 3HWBA 1GFQA 2KC0A 3AAAB 4GCPA 1IZNB 1THQA 3G7GA 4FUVA 4FZMA 4BUMX 3KZIO 3LK3B 2WVPA 4XNKA 3VY8X 5KAFO 3T20A 5T5FA 3DA4A 3PF1A 5DL7A 4K3BA 4D64A 8PRNA 3SY7A 3A0BO 4D5UA 4FZNA 7PRNA 3NSGA 2LHFA 4UB8O 5PRNA 3UU2A 3C5OA 3BRYA 4RJXA 3K19A 4C00A 4FRXA 2KXPB 2W81C 4U9CA 1MM4A 1T16A 3AA1A 1ORMA 5GV0A 3JCUO 2XG6A 5KAIO 3SZVA 2OMFA 5ADXK 1BXWA 5D5DA 3SZDA 4KR8A 4O3YA 5H2FO 1ZHYA 4GCSA 2R4OA 3SYBA 3GP6A 1E54A 3VZUX 2FGQX 1Q9FA 2R88A 4O4UA 3VE1A 4PR7A 3AA6B 4AKRA 3DWNA 3TZGA 5AFUL 1QJ8A 1GFNA 2R4NA 3KVDD 2YNKA 3HOEA 2R4PA 4AYDC 2O4VA 3AA0A 3POXA 2XE2A 4PUXA
chains in the Genus database with same CATH topology
4G75A 1ZHWA 1ZHZA 3V8UA 4B61A 2XE3A 3DA3A 4LSIA 1Q9GA 1GFMA 1YS5A 3AA7B 2K0LA 2MNHA 3PQSA 4C69X 2Y0HA 1P4TA 5DL8A 1G90A 3QRCA 2N2LA 4KRAA 5DL6A 4FOZA 1QJPA 4D65A 3WI5A 3PORA 4N59A 4AYNA 3LK2A 1QJ9A 4O3ZA 5EE2A 4RLBA 2K4TA 3O0EA 3VE2A 2J1NA 2KDYA 3VZWX 4RJWA 4O3WA 6PRNA 2XTQA 4FSPA 4GCQA 1ZHXA 3SY9A 3A2SX 2W80C 3HW9A 3JTYA 3PQUA 3HOLA 4FZLA 1HXUA 2Y7SA 3AA1B 4LSEA 3AAEA 3T24A 2FGRA 2ERVA 1GFOA 5AFUK 2X27X 3LK41 2M07A 2Y2XA 4RLCA 4FMSA 1MM5A 2Y0LA 4G76A 5JDPA 4AYEC 3WI4A 3FYXA 1PRNA 4FRTA 3POQA 4JCHA 4AFKA 1PHOA 4AKRB 3VZTX 3PRNA 2KZ7A 3AAAA 3AA0B 2ODJA 1IZNA 4RL9A 1ZHTA 4QQ1A 4AZLA 3UPGA 4GHBA 3LK3A 4XNLA 4FT6A 3RBHA 2XE1A 2XTRA 2MHLA 1HXXA 2XE5A 1H6S1 4FESA 4AKMA 2PRNA 4KR4A 2ZFGA 4FSOA 2LFUA 4AYMC 3LK2B 1OSMA 2QTKA 2KXPA 4E1TA 2ZLDA 1MPFA 3QRAA 2YPVA 3VY9X 2XMXA 4AUIA 2N2MA 5IYUA 1GFPA 2M06A 4AYID 4O49A 4LSHA 4N58A 4Z3TA 2PORA 3T0SA 3AA6A 1HXTA 3AAEB 4F4BA 1BH3A 5ADXL 3UAQA 1BT9A 4GF4A 3LK42 4O3XB 2GE4A 3POUA 5DL5A 3SYSA 4JFBA 3EMNX 2F1TA 2Y0KA 2JMMA 2J4UP 4LSFA 5FVNA 4E1SA 1OPFA 3AA7A 2F1VA 4O4XA 5G26A 2KZ7B 3HWBA 1GFQA 2KC0A 3AAAB 4GCPA 1IZNB 1THQA 3G7GA 4FUVA 4FZMA 4BUMX 3LK3B 4XNKA 3VY8X 3T20A 5T5FA 3DA4A 5DL7A 4D64A 8PRNA 3SY7A 4D5UA 4FZNA 7PRNA 3NSGA 2LHFA 5PRNA 3UU2A 3C5OA 4RJXA 3K19A 4FRXA 2KXPB 2W81C 4U9CA 1MM4A 3AA1A 1ORMA 5GV0A 2XG6A 3SZVA 2OMFA 5ADXK 1BXWA 5D5DA 3SZDA 4KR8A 4O3YA 1ZHYA 4GCSA 3SYBA 3GP6A 1E54A 3VZUX 2FGQX 1Q9FA 4O4UA 3VE1A 4AKRA 3AA6B 3TZGA 5AFUL 1QJ8A 1GFNA 3KVDD 2YNKA 3HOEA 4AYDC 2O4VA 3AA0A 3POXA 2XE2A 4PUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE3 A;  4LSI A;  1GFM A;  4C69 X;  2Y0H A;  5DL8 A;  4KRA A;  5DL6 A;  4FOZ A;  4D65 A;  3WI5 A;  3POR A;  2K4T A;  3O0E A;  2J1N A;  3VZW X;  4RJW A;  6PRN A;  4FSP A;  4GCQ A;  3SY9 A;  3A2S X;  3HW9 A;  3JTY A;  1HXU A;  4LSE A;  3T24 A;  2FGR A;  1GFO A;  2Y2X A;  4FMS A;  2Y0L A;  5JDP A;  3WI4 A;  3FYX A;  1PRN A;  4FRT A;  3POQ A;  1PHO A;  3VZT X;  3PRN A;  2ODJ A;  3UPG A;  4FT6 A;  2XE1 A;  1HXX A;  2XE5 A;  1H6S 1;  2PRN A;  4KR4 A;  2ZFG A;  4FSO A;  1OSM A;  2QTK A;  2ZLD A;  1MPF A;  3VY9 X;  4AUI A;  1GFP A;  4LSH A;  2POR A;  3T0S A;  1HXT A;  1BH3 A;  1BT9 A;  3POU A;  5DL5 A;  3SYS A;  4JFB A;  3EMN X;  2Y0K A;  2J4U P;  4LSF A;  5FVN A;  1OPF A;  3HWB A;  1GFQ A;  4GCP A;  4BUM X;  3VY8 X;  3T20 A;  5DL7 A;  4D64 A;  8PRN A;  3SY7 A;  4D5U A;  7PRN A;  3NSG A;  5PRN A;  3UU2 A;  4RJX A;  3K19 A;  4FRX A;  2XG6 A;  3SZV A;  2OMF A;  3SZD A;  4KR8 A;  4GCS A;  3SYB A;  1E54 A;  3VZU X;  2FGQ X;  1GFN A;  2O4V A;  3POX A;  2XE2 A; 
#chains in the Genus database with same CATH topology
 4G75 A;  1ZHW A;  1ZHZ A;  2F1C X;  4K3C A;  3V8U A;  4B61 A;  2XE3 A;  3DA3 A;  4LSI A;  1Q9G A;  1GFM A;  1YS5 A;  3AA7 B;  2K0L A;  2MNH A;  3PGR A;  3PQS A;  2Y0H A;  4C69 X;  1P4T A;  5GTI O;  5DL8 A;  1G90 A;  3QRC A;  2N2L A;  4KRA A;  4N74 A;  2R89 A;  1QJP A;  4FOZ A;  5DL6 A;  3WI5 A;  3POR A;  4D65 A;  2AXT O;  3BRZ A;  4N59 A;  4AYN A;  3LK2 A;  1QJ9 A;  4O3Z A;  5EE2 A;  4RLB A;  2K4T A;  3O0E A;  3VE2 A;  2J1N A;  2KDY A;  3VZW X;  4RJW A;  4O3W A;  6PRN A;  2XTQ A;  3NJT A;  4FSP A;  4GCQ A;  1ZHX A;  3A0H O;  5G3A A;  3A2S X;  3SY9 A;  2W80 C;  3HW9 A;  3JTY A;  3PQU A;  2JQY A;  3HOL A;  4FZL A;  1HXU A;  2Y7S A;  4N75 A;  3AA1 B;  1T1L A;  2IWV A;  4LSE A;  3AAE A;  3T24 A;  2FGR A;  2ERV A;  1GFO A;  5AFU K;  4C4V A;  2X27 X;  3LK4 1;  2IWW A;  2M07 A;  2X9K A;  2Y2X A;  5TIS O;  4RLC A;  4FMS A;  1MM5 A;  2Y0L A;  4G76 A;  5JDP A;  4AYE C;  3WI4 A;  3FYX A;  1PRN A;  4FRT A;  3POQ A;  4JCH A;  4AFK A;  1PHO A;  4AKR B;  3VZT X;  3PRN A;  2KZ7 A;  3AAA A;  3AA0 B;  2ODJ A;  1IZN A;  4RL9 A;  1ZHT A;  3PGS A;  4QQ1 A;  5E79 O;  5G38 A;  4AZL A;  4GHB A;  3UPG A;  3LK3 A;  4XNL A;  5B5E O;  4FT6 A;  1S5L O;  3RBH A;  2XE1 A;  2XTR A;  2MHL A;  3WU2 O;  1HXX A;  2XE5 A;  1H6S 1;  3DWO X;  2R8A A;  4FES A;  2PRN A;  4KR4 A;  4AKM A;  2ZFG A;  4FSO A;  3PGU A;  2LFU A;  4AYM C;  3LK2 B;  1OSM A;  2QTK A;  2KXP A;  4E1T A;  2ZLD A;  1MPF A;  3QRA A;  2YPV A;  3VY9 X;  2XMX A;  2WJR A;  4AUI A;  5GTH O;  2N2M A;  5IYU A;  1GFP A;  2M06 A;  4AYI D;  4O49 A;  4LSH A;  4N58 A;  4Z3T A;  2POR A;  4UB6 O;  3T0S A;  4FQE A;  3AA6 A;  2WJQ A;  1HXT A;  3AAE B;  3BS0 A;  1BH3 A;  4F4B A;  5ADX L;  3UAQ A;  2R4L A;  5B66 O;  4C4V B;  4PJ0 O;  1BT9 A;  4GF4 A;  3LK4 2;  4O3X B;  2GE4 A;  3POU A;  5DL5 A;  3SYS A;  5G39 A;  4JFB A;  4CTD A;  3EMN X;  2F1T A;  2Y0K A;  2JMM A;  2J4U P;  4LSF A;  5FVN A;  4IL6 O;  3DZM A;  4E1S A;  1OPF A;  3AA7 A;  2F1V A;  4O4X A;  5G26 A;  2KZ7 B;  3HWB A;  1GFQ A;  2KC0 A;  3AAA B;  4GCP A;  1IZN B;  1THQ A;  3G7G A;  4FUV A;  4FZM A;  4BUM X;  3KZI O;  3LK3 B;  2WVP A;  4XNK A;  3VY8 X;  5KAF O;  3T20 A;  5T5F A;  3DA4 A;  3PF1 A;  5DL7 A;  4K3B A;  4D64 A;  8PRN A;  3SY7 A;  3A0B O;  4D5U A;  4FZN A;  7PRN A;  3NSG A;  2LHF A;  4UB8 O;  5PRN A;  3UU2 A;  3C5O A;  3BRY A;  4RJX A;  3K19 A;  4C00 A;  4FRX A;  2KXP B;  2W81 C;  4U9C A;  1MM4 A;  1T16 A;  3AA1 A;  1ORM A;  5GV0 A;  3JCU O;  2XG6 A;  5KAI O;  3SZV A;  2OMF A;  5ADX K;  1BXW A;  5D5D A;  3SZD A;  4KR8 A;  4O3Y A;  5H2F O;  1ZHY A;  4GCS A;  2R4O A;  3SYB A;  3GP6 A;  1E54 A;  3VZU X;  2FGQ X;  1Q9F A;  2R88 A;  4O4U A;  3VE1 A;  4PR7 A;  3AA6 B;  4AKR A;  3DWN A;  3TZG A;  5AFU L;  1QJ8 A;  1GFN A;  2R4N A;  3KVD D;  2YNK A;  3HOE A;  2R4P A;  4AYD C;  2O4V A;  3AA0 A;  3POX A;  2XE2 A;  4PUX A; 
#chains in the Genus database with same CATH homology
 4G75 A;  1ZHW A;  1ZHZ A;  3V8U A;  4B61 A;  2XE3 A;  3DA3 A;  4LSI A;  1Q9G A;  1GFM A;  1YS5 A;  3AA7 B;  2K0L A;  2MNH A;  3PQS A;  4C69 X;  2Y0H A;  1P4T A;  5DL8 A;  1G90 A;  3QRC A;  2N2L A;  4KRA A;  5DL6 A;  4FOZ A;  1QJP A;  4D65 A;  3WI5 A;  3POR A;  4N59 A;  4AYN A;  3LK2 A;  1QJ9 A;  4O3Z A;  5EE2 A;  4RLB A;  2K4T A;  3O0E A;  3VE2 A;  2J1N A;  2KDY A;  3VZW X;  4RJW A;  4O3W A;  6PRN A;  2XTQ A;  4FSP A;  4GCQ A;  1ZHX A;  3SY9 A;  3A2S X;  2W80 C;  3HW9 A;  3JTY A;  3PQU A;  3HOL A;  4FZL A;  1HXU A;  2Y7S A;  3AA1 B;  4LSE A;  3AAE A;  3T24 A;  2FGR A;  2ERV A;  1GFO A;  5AFU K;  2X27 X;  3LK4 1;  2M07 A;  2Y2X A;  4RLC A;  4FMS A;  1MM5 A;  2Y0L A;  4G76 A;  5JDP A;  4AYE C;  3WI4 A;  3FYX A;  1PRN A;  4FRT A;  3POQ A;  4JCH A;  4AFK A;  1PHO A;  4AKR B;  3VZT X;  3PRN A;  2KZ7 A;  3AAA A;  3AA0 B;  2ODJ A;  1IZN A;  4RL9 A;  1ZHT A;  4QQ1 A;  4AZL A;  3UPG A;  4GHB A;  3LK3 A;  4XNL A;  4FT6 A;  3RBH A;  2XE1 A;  2XTR A;  2MHL A;  1HXX A;  2XE5 A;  1H6S 1;  4FES A;  4AKM A;  2PRN A;  4KR4 A;  2ZFG A;  4FSO A;  2LFU A;  4AYM C;  3LK2 B;  1OSM A;  2QTK A;  2KXP A;  4E1T A;  2ZLD A;  1MPF A;  3QRA A;  2YPV A;  3VY9 X;  2XMX A;  4AUI A;  2N2M A;  5IYU A;  1GFP A;  2M06 A;  4AYI D;  4O49 A;  4LSH A;  4N58 A;  4Z3T A;  2POR A;  3T0S A;  3AA6 A;  1HXT A;  3AAE B;  4F4B A;  1BH3 A;  5ADX L;  3UAQ A;  1BT9 A;  4GF4 A;  3LK4 2;  4O3X B;  2GE4 A;  3POU A;  5DL5 A;  3SYS A;  4JFB A;  3EMN X;  2F1T A;  2Y0K A;  2JMM A;  2J4U P;  4LSF A;  5FVN A;  4E1S A;  1OPF A;  3AA7 A;  2F1V A;  4O4X A;  5G26 A;  2KZ7 B;  3HWB A;  1GFQ A;  2KC0 A;  3AAA B;  4GCP A;  1IZN B;  1THQ A;  3G7G A;  4FUV A;  4FZM A;  4BUM X;  3LK3 B;  4XNK A;  3VY8 X;  3T20 A;  5T5F A;  3DA4 A;  5DL7 A;  4D64 A;  8PRN A;  3SY7 A;  4D5U A;  4FZN A;  7PRN A;  3NSG A;  2LHF A;  5PRN A;  3UU2 A;  3C5O A;  4RJX A;  3K19 A;  4FRX A;  2KXP B;  2W81 C;  4U9C A;  1MM4 A;  3AA1 A;  1ORM A;  5GV0 A;  2XG6 A;  3SZV A;  2OMF A;  5ADX K;  1BXW A;  5D5D A;  3SZD A;  4KR8 A;  4O3Y A;  1ZHY A;  4GCS A;  3SYB A;  3GP6 A;  1E54 A;  3VZU X;  2FGQ X;  1Q9F A;  4O4U A;  3VE1 A;  4AKR A;  3AA6 B;  3TZG A;  5AFU L;  1QJ8 A;  1GFN A;  3KVD D;  2YNK A;  3HOE A;  4AYD C;  2O4V A;  3AA0 A;  3POX A;  2XE2 A;  4PUX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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