3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
3WI4A 3POUA 3K19A 7PRNA 2XE3A 3VY8X 4FSPA 1GFOA 4FOZA 2Y0LA 1PHOA 3SYSA 1HXUA 1E54A 4KR8A 3PORA 3UU2A 4LSIA 3VZTX 2Y0KA 3O0EA 2ODJA 2XE5A 4GCPA 4C69X 3JTYA 2FGQX 2ZLDA 2FGRA 3POQA 4FSOA 4FT6A 5DL8A 3NSGA 4BUMX 4GCQA 3SZVA 1HXXA 3VZUX 2J4UP 4D64A 2PORA 3VZWX 1GFQA 4RJWA 3T0SA 4D65A 4LSEA 3FYXA 1OPFA 3EMNX 2Y2XA 4AUIA 1HXTA 1BT9A 3A2SX 2PRNA 5JDPA 1BH3A 3SYBA 5DL6A 6PRNA 3SZDA 2J1NA 1GFPA 3VY9X 1MPFA 2Y0HA 3HWBA 5PRNA 4JFBA 4KRAA 2K4TA 3SY9A 1H6S1 3UPGA 4LSHA 3POXA 4LSFA 4FMSA 1GFMA 1OSMA 5DL5A 3WI5A 3HW9A 3T24A 1GFNA 3PRNA 5DL7A 3SY7A 5FVNA 2XE1A 2O4VA 2QTKA 8PRNA 4FRTA 2ZFGA 3T20A 4D5UA 4KR4A 4FRXA 4GCSA 2XG6A 1PRNA 2XE2A 4RJXA 2OMFA
chains in the Genus database with same CATH superfamily
3WI4A 3AAEA 3K19A 3G7GA 3POUA 7PRNA 2XE3A 2IWWA 3BRYA 3RBHA 3VE2A 2N2LA 2KXPB 2WVPA 3AA7B 1GFOA 3QRAA 4FSPA 4QQ1A 2R4OA 3KVDD 4RJXA 2MNHA 4FOZA 5IYUA 2Y0LA 1IZNB 1PHOA 4XNLA 2JQYA 3SYSA 1HXUA 4AKRB 1E54A 2R4LA 1Q9GA 4KR8A 3VE1A 4AYNA 4C00A 2YNKA 4CTDA 1YS5A 4K3BA 3PF1A 5GTIO 2R8AA 2R4NA 2Y7SA 3PORA 3PQUA 2M07A 4FESA 1Q9FA 3LK41 3PGSA 4XNKA 3C5OA 3UU2A 5T5FA 1MM4A 4LSIA 4O3YA 3VZTX 5KAIO 2Y0KA 4G75A 1QJ8A 4PR7A 4Z3TA 3LK2B 3AA0B 3O0EA 1ZHYA 2R88A 2XTRA 4RL9A 4F4BA 1G90A 3V8UA 3JCUO 4IL6O 5AFUK 1ZHTA 2ODJA 4U9CA 2XE5A 2YPVA 1S5LO 2GE4A 3AA6B 4GCPA 3JTYA 3WU2O 4C69X 3LK3B 2FGQX 2ZLDA 4O4XA 5KAFO 2F1CX 2ERVA 1T16A 2W80C 3AAAB 2FGRA 3POQA 4FSOA 4FT6A 4FUVA 4G76A 4FZMA 2WJRA 5DL8A 4O3WA 3UAQA 3NSGA 1T1LA 2KDYA 2X9KA 4GCQA 4BUMX 3SZVA 5ADXL 2N2MA 4C4VB 5GTHO 1HXXA 4FQEA 3NJTA 3DA3A 1QJPA 3VZUX 5ADXK 2J4UP 3DZMA 4D64A 2PORA 3VZWX 1GFQA 4AYID 4RJWA 3T0SA 4D65A 4LSEA 3FYXA 2KC0A 1OPFA 3EMNX 2IWVA 1THQA 2KZ7A 3AAEB 3PGUA 2Y2XA 4AUIA 3HOLA 1HXTA 5G38A 1BT9A 3A2SX 3QRCA 2PRNA 5JDPA 1BH3A 3BS0A 3AA7A 2KXPA 2XMXA 3SYBA 5DL6A 6PRNA 3DWNA 4FZNA 3SZDA 2J1NA 1GFPA 2W81C 1IZNA 4RLCA 3TZGA 3GP6A 3VY9X 4E1SA 1MPFA 5E79O 2Y0HA 4AKRA 2MHLA 4JCHA 3HWBA 1P4TA 1BXWA 2JMMA 2WJQA 4UB8O 5G39A 5TISO 5PRNA 4GHBA 4JFBA 5GV0A 1ZHXA 2R4PA 4KRAA 2K4TA 3AA1A 3HOEA 4O49A 2F1VA 3SY9A 1H6S1 4FZLA 4AYMC 4B61A 3UPGA 2R89A 3A0BO 4PUXA 4LSHA 1ZHZA 3PGRA 3POXA 3LK2A 3AA0A 4LSFA 4FMSA 5H2FO 4E1TA 3VY8X 2LHFA 1ORMA 1GFMA 3DA4A 5G3AA 4AYDC 3AA6A 1OSMA 2X27X 4AFKA 5B66O 2K0LA 5AFUL 4AZLA 3LK3A 4UB6O 4PJ0O 5DL5A 3WI5A 2M06A 3HW9A 3T24A 1GFNA 5B5EO 4O4UA 3BRZA 3AAAA 4O3XB 3PRNA 5DL7A 3A0HO 4AYEC 4N74A 3SY7A 3AA1B 5G26A 4O3ZA 3DWOX 5FVNA 2AXTO 2XE1A 4N59A 1ZHWA 2O4VA 4AKMA 5D5DA 2QTKA 4C4VA 3PQSA 8PRNA 4N75A 4K3CA 5EE2A 4FRTA 2ZFGA 3KZIO 3T20A 4RLBA 4KR4A 4D5UA 4FRXA 4GCSA 4GF4A 2LFUA 1MM5A 2XTQA 2F1TA 2KZ7B 2XG6A 1PRNA 2XE2A 3LK42 4N58A 2OMFA 1QJ9A
chains in the Genus database with same CATH topology
3WI4A 3AAEA 3K19A 3G7GA 3POUA 7PRNA 2XE3A 3RBHA 3VE2A 2N2LA 2KXPB 3AA7B 4FSPA 1GFOA 3QRAA 4QQ1A 3VY8X 3KVDD 4RJXA 2MNHA 4FOZA 5IYUA 2Y0LA 1IZNB 1PHOA 4XNLA 3SYSA 1HXUA 4AKRB 1E54A 1Q9GA 4KR8A 3VE1A 4AYNA 2YNKA 1YS5A 3PQUA 2Y7SA 3PORA 4FESA 2M07A 1Q9FA 3LK41 4XNKA 3UU2A 3C5OA 5T5FA 1MM4A 4LSIA 4O3YA 3VZTX 2Y0KA 4G75A 1QJ8A 4Z3TA 3LK2B 3AA0B 3O0EA 1ZHYA 4RL9A 2XTRA 4F4BA 1G90A 3V8UA 5AFUK 1ZHTA 2ODJA 4U9CA 2XE5A 2YPVA 2GE4A 3AA6B 4GCPA 4C69X 3JTYA 3LK3B 2FGQX 2ZLDA 4O4XA 2ERVA 3AAAB 2W80C 2FGRA 3POQA 4FSOA 4FT6A 4FUVA 4G76A 4FZMA 3UAQA 5DL8A 4O3WA 3NSGA 2KDYA 4GCQA 4BUMX 3SZVA 5ADXL 2N2MA 1HXXA 3DA3A 1QJPA 3VZUX 5ADXK 2J4UP 4D64A 2PORA 3VZWX 1GFQA 4AYID 4RJWA 3T0SA 4D65A 4LSEA 3FYXA 2KC0A 1OPFA 3EMNX 3AAEB 1THQA 2KZ7A 2Y2XA 4AUIA 3HOLA 1HXTA 1BT9A 3A2SX 3QRCA 2PRNA 5JDPA 1BH3A 3SYBA 3AA7A 2KXPA 2XMXA 5DL6A 6PRNA 4FZNA 3SZDA 2J1NA 1GFPA 2W81C 1IZNA 4RLCA 3TZGA 3GP6A 3VY9X 4E1SA 1MPFA 2Y0HA 4AKRA 2MHLA 4JCHA 3HWBA 1P4TA 1BXWA 2JMMA 5PRNA 4GHBA 4JFBA 5GV0A 1ZHXA 4KRAA 2K4TA 3AA1A 3HOEA 4O49A 2F1VA 3SY9A 1H6S1 4FZLA 4AYMC 4B61A 3UPGA 4PUXA 4LSHA 1ZHZA 3POXA 3LK2A 3AA0A 4LSFA 4FMSA 4E1TA 2LHFA 1ORMA 1GFMA 3DA4A 4AYDC 3AA6A 1OSMA 2X27X 4AFKA 2K0LA 5AFUL 4AZLA 3LK3A 5DL5A 3WI5A 2M06A 3HW9A 3T24A 1GFNA 4O4UA 3AAAA 4O3XB 3PRNA 5DL7A 4AYEC 3SY7A 3AA1B 5G26A 4O3ZA 5FVNA 4AKMA 2XE1A 4N59A 1ZHWA 2O4VA 5D5DA 2QTKA 3PQSA 8PRNA 5EE2A 4FRTA 2ZFGA 3T20A 4RLBA 4KR4A 4D5UA 4FRXA 4GCSA 4GF4A 2LFUA 1MM5A 2XTQA 2F1TA 2KZ7B 2XG6A 1PRNA 2XE2A 3LK42 4N58A 2OMFA 1QJ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WI4 A;  3POU A;  3K19 A;  7PRN A;  2XE3 A;  3VY8 X;  4FSP A;  1GFO A;  4FOZ A;  2Y0L A;  1PHO A;  3SYS A;  1HXU A;  1E54 A;  4KR8 A;  3POR A;  3UU2 A;  4LSI A;  3VZT X;  2Y0K A;  3O0E A;  2ODJ A;  2XE5 A;  4GCP A;  4C69 X;  3JTY A;  2FGQ X;  2ZLD A;  2FGR A;  3POQ A;  4FSO A;  4FT6 A;  5DL8 A;  3NSG A;  4BUM X;  4GCQ A;  3SZV A;  1HXX A;  3VZU X;  2J4U P;  4D64 A;  2POR A;  3VZW X;  1GFQ A;  4RJW A;  3T0S A;  4D65 A;  4LSE A;  3FYX A;  1OPF A;  3EMN X;  2Y2X A;  4AUI A;  1HXT A;  1BT9 A;  3A2S X;  2PRN A;  5JDP A;  1BH3 A;  3SYB A;  5DL6 A;  6PRN A;  3SZD A;  2J1N A;  1GFP A;  3VY9 X;  1MPF A;  2Y0H A;  3HWB A;  5PRN A;  4JFB A;  4KRA A;  2K4T A;  3SY9 A;  1H6S 1;  3UPG A;  4LSH A;  3POX A;  4LSF A;  4FMS A;  1GFM A;  1OSM A;  5DL5 A;  3WI5 A;  3HW9 A;  3T24 A;  1GFN A;  3PRN A;  5DL7 A;  3SY7 A;  5FVN A;  2XE1 A;  2O4V A;  2QTK A;  8PRN A;  4FRT A;  2ZFG A;  3T20 A;  4D5U A;  4KR4 A;  4FRX A;  4GCS A;  2XG6 A;  1PRN A;  2XE2 A;  4RJX A;  2OMF A; 
#chains in the Genus database with same CATH topology
 3WI4 A;  3AAE A;  3K19 A;  3G7G A;  3POU A;  7PRN A;  2XE3 A;  2IWW A;  3BRY A;  3RBH A;  3VE2 A;  2N2L A;  2KXP B;  2WVP A;  3AA7 B;  1GFO A;  3QRA A;  4FSP A;  4QQ1 A;  2R4O A;  3KVD D;  4RJX A;  2MNH A;  4FOZ A;  5IYU A;  2Y0L A;  1IZN B;  1PHO A;  4XNL A;  2JQY A;  3SYS A;  1HXU A;  4AKR B;  1E54 A;  2R4L A;  1Q9G A;  4KR8 A;  3VE1 A;  4AYN A;  4C00 A;  2YNK A;  4CTD A;  1YS5 A;  4K3B A;  3PF1 A;  5GTI O;  2R8A A;  2R4N A;  2Y7S A;  3POR A;  3PQU A;  2M07 A;  4FES A;  1Q9F A;  3LK4 1;  3PGS A;  4XNK A;  3C5O A;  3UU2 A;  5T5F A;  1MM4 A;  4LSI A;  4O3Y A;  3VZT X;  5KAI O;  2Y0K A;  4G75 A;  1QJ8 A;  4PR7 A;  4Z3T A;  3LK2 B;  3AA0 B;  3O0E A;  1ZHY A;  2R88 A;  2XTR A;  4RL9 A;  4F4B A;  1G90 A;  3V8U A;  3JCU O;  4IL6 O;  5AFU K;  1ZHT A;  2ODJ A;  4U9C A;  2XE5 A;  2YPV A;  1S5L O;  2GE4 A;  3AA6 B;  4GCP A;  3JTY A;  3WU2 O;  4C69 X;  3LK3 B;  2FGQ X;  2ZLD A;  4O4X A;  5KAF O;  2F1C X;  2ERV A;  1T16 A;  2W80 C;  3AAA B;  2FGR A;  3POQ A;  4FSO A;  4FT6 A;  4FUV A;  4G76 A;  4FZM A;  2WJR A;  5DL8 A;  4O3W A;  3UAQ A;  3NSG A;  1T1L A;  2KDY A;  2X9K A;  4GCQ A;  4BUM X;  3SZV A;  5ADX L;  2N2M A;  4C4V B;  5GTH O;  1HXX A;  4FQE A;  3NJT A;  3DA3 A;  1QJP A;  3VZU X;  5ADX K;  2J4U P;  3DZM A;  4D64 A;  2POR A;  3VZW X;  1GFQ A;  4AYI D;  4RJW A;  3T0S A;  4D65 A;  4LSE A;  3FYX A;  2KC0 A;  1OPF A;  3EMN X;  2IWV A;  1THQ A;  2KZ7 A;  3AAE B;  3PGU A;  2Y2X A;  4AUI A;  3HOL A;  1HXT A;  5G38 A;  1BT9 A;  3A2S X;  3QRC A;  2PRN A;  5JDP A;  1BH3 A;  3BS0 A;  3AA7 A;  2KXP A;  2XMX A;  3SYB A;  5DL6 A;  6PRN A;  3DWN A;  4FZN A;  3SZD A;  2J1N A;  1GFP A;  2W81 C;  1IZN A;  4RLC A;  3TZG A;  3GP6 A;  3VY9 X;  4E1S A;  1MPF A;  5E79 O;  2Y0H A;  4AKR A;  2MHL A;  4JCH A;  3HWB A;  1P4T A;  1BXW A;  2JMM A;  2WJQ A;  4UB8 O;  5G39 A;  5TIS O;  5PRN A;  4GHB A;  4JFB A;  5GV0 A;  1ZHX A;  2R4P A;  4KRA A;  2K4T A;  3AA1 A;  3HOE A;  4O49 A;  2F1V A;  3SY9 A;  1H6S 1;  4FZL A;  4AYM C;  4B61 A;  3UPG A;  2R89 A;  3A0B O;  4PUX A;  4LSH A;  1ZHZ A;  3PGR A;  3POX A;  3LK2 A;  3AA0 A;  4LSF A;  4FMS A;  5H2F O;  4E1T A;  3VY8 X;  2LHF A;  1ORM A;  1GFM A;  3DA4 A;  5G3A A;  4AYD C;  3AA6 A;  1OSM A;  2X27 X;  4AFK A;  5B66 O;  2K0L A;  5AFU L;  4AZL A;  3LK3 A;  4UB6 O;  4PJ0 O;  5DL5 A;  3WI5 A;  2M06 A;  3HW9 A;  3T24 A;  1GFN A;  5B5E O;  4O4U A;  3BRZ A;  3AAA A;  4O3X B;  3PRN A;  5DL7 A;  3A0H O;  4AYE C;  4N74 A;  3SY7 A;  3AA1 B;  5G26 A;  4O3Z A;  3DWO X;  5FVN A;  2AXT O;  2XE1 A;  4N59 A;  1ZHW A;  2O4V A;  4AKM A;  5D5D A;  2QTK A;  4C4V A;  3PQS A;  8PRN A;  4N75 A;  4K3C A;  5EE2 A;  4FRT A;  2ZFG A;  3KZI O;  3T20 A;  4RLB A;  4KR4 A;  4D5U A;  4FRX A;  4GCS A;  4GF4 A;  2LFU A;  1MM5 A;  2XTQ A;  2F1T A;  2KZ7 B;  2XG6 A;  1PRN A;  2XE2 A;  3LK4 2;  4N58 A;  2OMF A;  1QJ9 A; 
#chains in the Genus database with same CATH homology
 3WI4 A;  3AAE A;  3K19 A;  3G7G A;  3POU A;  7PRN A;  2XE3 A;  3RBH A;  3VE2 A;  2N2L A;  2KXP B;  3AA7 B;  4FSP A;  1GFO A;  3QRA A;  4QQ1 A;  3VY8 X;  3KVD D;  4RJX A;  2MNH A;  4FOZ A;  5IYU A;  2Y0L A;  1IZN B;  1PHO A;  4XNL A;  3SYS A;  1HXU A;  4AKR B;  1E54 A;  1Q9G A;  4KR8 A;  3VE1 A;  4AYN A;  2YNK A;  1YS5 A;  3PQU A;  2Y7S A;  3POR A;  4FES A;  2M07 A;  1Q9F A;  3LK4 1;  4XNK A;  3UU2 A;  3C5O A;  5T5F A;  1MM4 A;  4LSI A;  4O3Y A;  3VZT X;  2Y0K A;  4G75 A;  1QJ8 A;  4Z3T A;  3LK2 B;  3AA0 B;  3O0E A;  1ZHY A;  4RL9 A;  2XTR A;  4F4B A;  1G90 A;  3V8U A;  5AFU K;  1ZHT A;  2ODJ A;  4U9C A;  2XE5 A;  2YPV A;  2GE4 A;  3AA6 B;  4GCP A;  4C69 X;  3JTY A;  3LK3 B;  2FGQ X;  2ZLD A;  4O4X A;  2ERV A;  3AAA B;  2W80 C;  2FGR A;  3POQ A;  4FSO A;  4FT6 A;  4FUV A;  4G76 A;  4FZM A;  3UAQ A;  5DL8 A;  4O3W A;  3NSG A;  2KDY A;  4GCQ A;  4BUM X;  3SZV A;  5ADX L;  2N2M A;  1HXX A;  3DA3 A;  1QJP A;  3VZU X;  5ADX K;  2J4U P;  4D64 A;  2POR A;  3VZW X;  1GFQ A;  4AYI D;  4RJW A;  3T0S A;  4D65 A;  4LSE A;  3FYX A;  2KC0 A;  1OPF A;  3EMN X;  3AAE B;  1THQ A;  2KZ7 A;  2Y2X A;  4AUI A;  3HOL A;  1HXT A;  1BT9 A;  3A2S X;  3QRC A;  2PRN A;  5JDP A;  1BH3 A;  3SYB A;  3AA7 A;  2KXP A;  2XMX A;  5DL6 A;  6PRN A;  4FZN A;  3SZD A;  2J1N A;  1GFP A;  2W81 C;  1IZN A;  4RLC A;  3TZG A;  3GP6 A;  3VY9 X;  4E1S A;  1MPF A;  2Y0H A;  4AKR A;  2MHL A;  4JCH A;  3HWB A;  1P4T A;  1BXW A;  2JMM A;  5PRN A;  4GHB A;  4JFB A;  5GV0 A;  1ZHX A;  4KRA A;  2K4T A;  3AA1 A;  3HOE A;  4O49 A;  2F1V A;  3SY9 A;  1H6S 1;  4FZL A;  4AYM C;  4B61 A;  3UPG A;  4PUX A;  4LSH A;  1ZHZ A;  3POX A;  3LK2 A;  3AA0 A;  4LSF A;  4FMS A;  4E1T A;  2LHF A;  1ORM A;  1GFM A;  3DA4 A;  4AYD C;  3AA6 A;  1OSM A;  2X27 X;  4AFK A;  2K0L A;  5AFU L;  4AZL A;  3LK3 A;  5DL5 A;  3WI5 A;  2M06 A;  3HW9 A;  3T24 A;  1GFN A;  4O4U A;  3AAA A;  4O3X B;  3PRN A;  5DL7 A;  4AYE C;  3SY7 A;  3AA1 B;  5G26 A;  4O3Z A;  5FVN A;  4AKM A;  2XE1 A;  4N59 A;  1ZHW A;  2O4V A;  5D5D A;  2QTK A;  3PQS A;  8PRN A;  5EE2 A;  4FRT A;  2ZFG A;  3T20 A;  4RLB A;  4KR4 A;  4D5U A;  4FRX A;  4GCS A;  4GF4 A;  2LFU A;  1MM5 A;  2XTQ A;  2F1T A;  2KZ7 B;  2XG6 A;  1PRN A;  2XE2 A;  3LK4 2;  4N58 A;  2OMF A;  1QJ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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