3VZTX

Crystal structure of outer membrane protein porb from neisseria meningitidis
Total Genus 85
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
341
structure length
341
Chain Sequence
b'QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 85
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vztX00
2XE5A 3SZVA 3POQA 3A2SX 2Y0HA 4LSIA 4JFBA 4FT6A 1HXXA 5JDPA 3SY7A 3UU2A 4RJXA 3VY8X 2Y0LA 1E54A 2XE3A 4GCPA 2J1NA 3SZDA 2FGQX 4D5UA 1PRNA 1H6S1 2K4TA 3NSGA 4KR4A 1HXTA 3UPGA 1HXUA 5DL7A 1GFNA 4FMSA 4D64A 3VZUX 2J4UP 1GFQA 4BUMX 3FYXA 8PRNA 3HW9A 4KRAA 4LSHA 3WI5A 5DL8A 3VY9X 3K19A 4FSPA 2ZLDA 4GCSA 4FRXA 3T0SA 2XG6A 5DL6A 6PRNA 1BH3A 2XE1A 2QTKA 3O0EA 3SY9A 2Y0KA 3HWBA 1MPFA 7PRNA 3POXA 5FVNA 5PRNA 3SYSA 3WI4A 5DL5A 1OPFA 3EMNX 3POUA 2Y2XA 4FOZA 1GFOA 1GFMA 4D65A 4GCQA 3PRNA 2OMFA 2ZFGA 3VZWX 4LSFA 2XE2A 2ODJA 1GFPA 3VZTX 4C69X 3PORA 1OSMA 2O4VA 2PORA 4FRTA 4KR8A 3T20A 3SYBA 2FGRA 3T24A 1BT9A 1PHOA 3JTYA 4FSOA 4LSEA 2PRNA 4AUIA 4RJWA
chains in the Genus database with same CATH superfamily
4JCHA 3LK41 2XE5A 1IZNA 4IL6O 1MM4A 2XMXA 3SZVA 3POQA 4C4VB 3A2SX 1T1LA 2Y0HA 4LSIA 4JFBA 4FT6A 3PGSA 2X9KA 2YPVA 1HXXA 4N75A 3PQUA 3AA7A 5JDPA 2JQYA 2N2MA 2LHFA 3SY7A 4O3YA 2WVPA 4RJXA 3UU2A 4F4BA 3VY8X 3AAAA 2Y0LA 5T5FA 4FQEA 5IYUA 1E54A 2XTRA 2XE3A 1T16A 3G7GA 4GCPA 3VE2A 2KC0A 2LFUA 4C4VA 2R89A 2IWWA 2J1NA 2W81C 2ERVA 1QJ9A 4QQ1A 2FGQX 2AXTO 3SZDA 4D5UA 5B66O 7PRNA 5ADXL 2R4OA 1PRNA 1H6S1 4G75A 4AYDC 2K4TA 3NSGA 5EE2A 4KR4A 1HXTA 4AKMA 1YS5A 3UPGA 1HXUA 4FZLA 3KVDD 5DL7A 3A0BO 1GFNA 3PF1A 4FMSA 3QRAA 4D64A 2WJQA 1ZHYA 5H2FO 2F1TA 2R8AA 4UB6O 5G39A 3VZUX 2J4UP 4FZMA 3LK42 4N58A 3GP6A 4E1SA 2Y7SA 1GFQA 2R88A 4GF4A 4CTDA 1G90A 4BUMX 3FYXA 3JCUO 1ZHTA 8PRNA 3AA1B 5GV0A 3AA0A 3HW9A 4FESA 4KRAA 2KXPB 3BS0A 5D5DA 3NJTA 4LSHA 2R4PA 1QJPA 3WI5A 5DL8A 2W80C 3DA4A 3K19A 4FSPA 4N74A 3VY9X 4AYID 4PUXA 5GTIO 4Z3TA 5B5EO 2ZLDA 3C5OA 4GHBA 4G76A 5KAFO 3PGRA 4GCSA 3LK3B 1ZHZA 2X27X 4FRXA 5G3AA 3T0SA 2XG6A 3AA1A 5DL6A 4AKRB 3AAEB 6PRNA 1BH3A 2KXPA 2XE1A 2MNHA 4O3ZA 1Q9FA 4O3XB 2KZ7B 2QTKA 5E79O 3O0EA 4RLBA 1S5LO 3SY9A 3A0HO 4K3CA 3UAQA 2GE4A 2Y0KA 3HOLA 3HWBA 3PGUA 4UB8O 1MPFA 3V8UA 2F1VA 4C00A 2M07A 3LK3A 3POXA 5FVNA 5PRNA 3SYSA 3TZGA 5ADXK 2WJRA 3WI4A 5DL5A 2MHLA 1OPFA 3EMNX 4N59A 3POUA 2Y2XA 4FOZA 4PJ0O 1THQA 3AAEA 4O49A 4AKRA 1GFOA 3WU2O 4AYNA 4XNLA 1GFMA 1P4TA 2KZ7A 4FZNA 4FUVA 3RBHA 4D65A 1MM5A 4GCQA 4RL9A 4E1TA 5AFUL 1ZHXA 3PRNA 4AFKA 2OMFA 2ZFGA 3VZWX 2KDYA 2R4LA 2N2LA 3LK2B 4K3BA 4LSFA 2XE2A 3DWNA 4XNKA 2ODJA 4AZLA 3AA6B 3DZMA 1GFPA 3VZTX 4C69X 3PORA 1OSMA 2O4VA 2PORA 3HOEA 3KZIO 4FRTA 4KR8A 5KAIO 3T20A 1ZHWA 2XTQA 3BRZA 3SYBA 4U9CA 4RLCA 3BRYA 2FGRA 5AFUK 2JMMA 4PR7A 2M06A 3T24A 5G26A 1BT9A 1PHOA 3DA3A 3VE1A 4AYEC 1BXWA 3LK2A 1IZNB 3QRCA 4B61A 4AYMC 5GTHO 2K0LA 3AA6A 3PQSA 5TISO 3JTYA 4O4UA 4FSOA 4O4XA 2F1CX 4LSEA 3AA7B 3DWOX 1QJ8A 4O3WA 1ORMA 2PRNA 4AUIA 1Q9GA 2IWVA 2R4NA 3AA0B 3AAAB 2YNKA 5G38A 4RJWA
chains in the Genus database with same CATH topology
4JCHA 3LK41 2XE5A 1IZNA 1MM4A 2XMXA 3SZVA 3POQA 3A2SX 2Y0HA 4LSIA 4JFBA 4FT6A 2YPVA 1HXXA 3PQUA 3AA7A 5JDPA 2N2MA 2LHFA 3SY7A 4O3YA 3UU2A 4RJXA 4F4BA 3VY8X 3AAAA 2Y0LA 5T5FA 5IYUA 1E54A 2XTRA 2XE3A 3G7GA 4GCPA 3VE2A 2KC0A 2LFUA 2J1NA 2W81C 2ERVA 1QJ9A 4QQ1A 2FGQX 3SZDA 4D5UA 5ADXL 1PRNA 1H6S1 4G75A 4AYDC 2K4TA 3NSGA 5EE2A 4KR4A 1HXTA 4AKMA 1YS5A 3UPGA 1HXUA 4FZLA 3KVDD 5DL7A 1GFNA 4FMSA 4D64A 3QRAA 1ZHYA 2F1TA 3VZUX 2J4UP 4FZMA 3LK42 4N58A 3GP6A 4E1SA 2Y7SA 1GFQA 4GF4A 1G90A 4BUMX 3FYXA 1ZHTA 8PRNA 3AA1B 5GV0A 3AA0A 3HW9A 4FESA 4KRAA 2KXPB 5D5DA 4LSHA 1QJPA 3WI5A 5DL8A 2W80C 3DA4A 3K19A 4FSPA 3VY9X 4AYID 4Z3TA 4PUXA 2ZLDA 3C5OA 4GHBA 4G76A 4GCSA 3LK3B 1ZHZA 2X27X 4FRXA 3T0SA 2XG6A 3AA1A 5DL6A 4AKRB 3AAEB 6PRNA 1BH3A 2KXPA 2XE1A 2MNHA 4O3ZA 1Q9FA 4O3XB 2KZ7B 2QTKA 3O0EA 4RLBA 3SY9A 3UAQA 2GE4A 2Y0KA 3HOLA 3HWBA 3V8UA 1MPFA 7PRNA 2F1VA 2M07A 3LK3A 3POXA 5FVNA 5PRNA 3SYSA 3TZGA 5ADXK 3WI4A 5DL5A 2MHLA 1OPFA 3EMNX 4N59A 3POUA 2Y2XA 4FOZA 4AKRA 1THQA 3AAEA 4O49A 4AYMC 1GFOA 4AYNA 4XNLA 1GFMA 1P4TA 2KZ7A 4FZNA 4FUVA 3RBHA 4D65A 1MM5A 4GCQA 4RL9A 4E1TA 5AFUL 1ZHXA 3PRNA 4AFKA 2OMFA 2ZFGA 3VZWX 2KDYA 2N2LA 3LK2B 4LSFA 4AZLA 2XE2A 4XNKA 2ODJA 3AA6B 1GFPA 3VZTX 4C69X 3PORA 1OSMA 2O4VA 2PORA 3HOEA 4FRTA 4KR8A 3T20A 1ZHWA 2XTQA 3SYBA 4U9CA 4RLCA 2FGRA 5AFUK 2JMMA 2M06A 3T24A 5G26A 1BT9A 1PHOA 3DA3A 3VE1A 4AYEC 1BXWA 3LK2A 1IZNB 3QRCA 4B61A 2K0LA 3AA6A 3PQSA 3JTYA 4O4UA 4FSOA 4O4XA 4LSEA 3AA7B 4O3WA 1QJ8A 1ORMA 2PRNA 4AUIA 1Q9GA 3AA0B 3AAAB 2YNKA 4RJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE5 A;  3SZV A;  3POQ A;  3A2S X;  2Y0H A;  4LSI A;  4JFB A;  4FT6 A;  1HXX A;  5JDP A;  3SY7 A;  3UU2 A;  4RJX A;  3VY8 X;  2Y0L A;  1E54 A;  2XE3 A;  4GCP A;  2J1N A;  3SZD A;  2FGQ X;  4D5U A;  1PRN A;  1H6S 1;  2K4T A;  3NSG A;  4KR4 A;  1HXT A;  3UPG A;  1HXU A;  5DL7 A;  1GFN A;  4FMS A;  4D64 A;  3VZU X;  2J4U P;  1GFQ A;  4BUM X;  3FYX A;  8PRN A;  3HW9 A;  4KRA A;  4LSH A;  3WI5 A;  5DL8 A;  3VY9 X;  3K19 A;  4FSP A;  2ZLD A;  4GCS A;  4FRX A;  3T0S A;  2XG6 A;  5DL6 A;  6PRN A;  1BH3 A;  2XE1 A;  2QTK A;  3O0E A;  3SY9 A;  2Y0K A;  3HWB A;  1MPF A;  7PRN A;  3POX A;  5FVN A;  5PRN A;  3SYS A;  3WI4 A;  5DL5 A;  1OPF A;  3EMN X;  3POU A;  2Y2X A;  4FOZ A;  1GFO A;  1GFM A;  4D65 A;  4GCQ A;  3PRN A;  2OMF A;  2ZFG A;  3VZW X;  4LSF A;  2XE2 A;  2ODJ A;  1GFP A;  3VZT X;  4C69 X;  3POR A;  1OSM A;  2O4V A;  2POR A;  4FRT A;  4KR8 A;  3T20 A;  3SYB A;  2FGR A;  3T24 A;  1BT9 A;  1PHO A;  3JTY A;  4FSO A;  4LSE A;  2PRN A;  4AUI A;  4RJW A; 
#chains in the Genus database with same CATH topology
 4JCH A;  3LK4 1;  2XE5 A;  1IZN A;  4IL6 O;  1MM4 A;  2XMX A;  3SZV A;  3POQ A;  4C4V B;  3A2S X;  1T1L A;  2Y0H A;  4LSI A;  4JFB A;  4FT6 A;  3PGS A;  2X9K A;  2YPV A;  1HXX A;  4N75 A;  3PQU A;  3AA7 A;  5JDP A;  2JQY A;  2N2M A;  2LHF A;  3SY7 A;  4O3Y A;  2WVP A;  4RJX A;  3UU2 A;  4F4B A;  3VY8 X;  3AAA A;  2Y0L A;  5T5F A;  4FQE A;  5IYU A;  1E54 A;  2XTR A;  2XE3 A;  1T16 A;  3G7G A;  4GCP A;  3VE2 A;  2KC0 A;  2LFU A;  4C4V A;  2R89 A;  2IWW A;  2J1N A;  2W81 C;  2ERV A;  1QJ9 A;  4QQ1 A;  2FGQ X;  2AXT O;  3SZD A;  4D5U A;  5B66 O;  7PRN A;  5ADX L;  2R4O A;  1PRN A;  1H6S 1;  4G75 A;  4AYD C;  2K4T A;  3NSG A;  5EE2 A;  4KR4 A;  1HXT A;  4AKM A;  1YS5 A;  3UPG A;  1HXU A;  4FZL A;  3KVD D;  5DL7 A;  3A0B O;  1GFN A;  3PF1 A;  4FMS A;  3QRA A;  4D64 A;  2WJQ A;  1ZHY A;  5H2F O;  2F1T A;  2R8A A;  4UB6 O;  5G39 A;  3VZU X;  2J4U P;  4FZM A;  3LK4 2;  4N58 A;  3GP6 A;  4E1S A;  2Y7S A;  1GFQ A;  2R88 A;  4GF4 A;  4CTD A;  1G90 A;  4BUM X;  3FYX A;  3JCU O;  1ZHT A;  8PRN A;  3AA1 B;  5GV0 A;  3AA0 A;  3HW9 A;  4FES A;  4KRA A;  2KXP B;  3BS0 A;  5D5D A;  3NJT A;  4LSH A;  2R4P A;  1QJP A;  3WI5 A;  5DL8 A;  2W80 C;  3DA4 A;  3K19 A;  4FSP A;  4N74 A;  3VY9 X;  4AYI D;  4PUX A;  5GTI O;  4Z3T A;  5B5E O;  2ZLD A;  3C5O A;  4GHB A;  4G76 A;  5KAF O;  3PGR A;  4GCS A;  3LK3 B;  1ZHZ A;  2X27 X;  4FRX A;  5G3A A;  3T0S A;  2XG6 A;  3AA1 A;  5DL6 A;  4AKR B;  3AAE B;  6PRN A;  1BH3 A;  2KXP A;  2XE1 A;  2MNH A;  4O3Z A;  1Q9F A;  4O3X B;  2KZ7 B;  2QTK A;  5E79 O;  3O0E A;  4RLB A;  1S5L O;  3SY9 A;  3A0H O;  4K3C A;  3UAQ A;  2GE4 A;  2Y0K A;  3HOL A;  3HWB A;  3PGU A;  4UB8 O;  1MPF A;  3V8U A;  2F1V A;  4C00 A;  2M07 A;  3LK3 A;  3POX A;  5FVN A;  5PRN A;  3SYS A;  3TZG A;  5ADX K;  2WJR A;  3WI4 A;  5DL5 A;  2MHL A;  1OPF A;  3EMN X;  4N59 A;  3POU A;  2Y2X A;  4FOZ A;  4PJ0 O;  1THQ A;  3AAE A;  4O49 A;  4AKR A;  1GFO A;  3WU2 O;  4AYN A;  4XNL A;  1GFM A;  1P4T A;  2KZ7 A;  4FZN A;  4FUV A;  3RBH A;  4D65 A;  1MM5 A;  4GCQ A;  4RL9 A;  4E1T A;  5AFU L;  1ZHX A;  3PRN A;  4AFK A;  2OMF A;  2ZFG A;  3VZW X;  2KDY A;  2R4L A;  2N2L A;  3LK2 B;  4K3B A;  4LSF A;  2XE2 A;  3DWN A;  4XNK A;  2ODJ A;  4AZL A;  3AA6 B;  3DZM A;  1GFP A;  3VZT X;  4C69 X;  3POR A;  1OSM A;  2O4V A;  2POR A;  3HOE A;  3KZI O;  4FRT A;  4KR8 A;  5KAI O;  3T20 A;  1ZHW A;  2XTQ A;  3BRZ A;  3SYB A;  4U9C A;  4RLC A;  3BRY A;  2FGR A;  5AFU K;  2JMM A;  4PR7 A;  2M06 A;  3T24 A;  5G26 A;  1BT9 A;  1PHO A;  3DA3 A;  3VE1 A;  4AYE C;  1BXW A;  3LK2 A;  1IZN B;  3QRC A;  4B61 A;  4AYM C;  5GTH O;  2K0L A;  3AA6 A;  3PQS A;  5TIS O;  3JTY A;  4O4U A;  4FSO A;  4O4X A;  2F1C X;  4LSE A;  3AA7 B;  3DWO X;  1QJ8 A;  4O3W A;  1ORM A;  2PRN A;  4AUI A;  1Q9G A;  2IWV A;  2R4N A;  3AA0 B;  3AAA B;  2YNK A;  5G38 A;  4RJW A; 
#chains in the Genus database with same CATH homology
 4JCH A;  3LK4 1;  2XE5 A;  1IZN A;  1MM4 A;  2XMX A;  3SZV A;  3POQ A;  3A2S X;  2Y0H A;  4LSI A;  4JFB A;  4FT6 A;  2YPV A;  1HXX A;  3PQU A;  3AA7 A;  5JDP A;  2N2M A;  2LHF A;  3SY7 A;  4O3Y A;  3UU2 A;  4RJX A;  4F4B A;  3VY8 X;  3AAA A;  2Y0L A;  5T5F A;  5IYU A;  1E54 A;  2XTR A;  2XE3 A;  3G7G A;  4GCP A;  3VE2 A;  2KC0 A;  2LFU A;  2J1N A;  2W81 C;  2ERV A;  1QJ9 A;  4QQ1 A;  2FGQ X;  3SZD A;  4D5U A;  5ADX L;  1PRN A;  1H6S 1;  4G75 A;  4AYD C;  2K4T A;  3NSG A;  5EE2 A;  4KR4 A;  1HXT A;  4AKM A;  1YS5 A;  3UPG A;  1HXU A;  4FZL A;  3KVD D;  5DL7 A;  1GFN A;  4FMS A;  4D64 A;  3QRA A;  1ZHY A;  2F1T A;  3VZU X;  2J4U P;  4FZM A;  3LK4 2;  4N58 A;  3GP6 A;  4E1S A;  2Y7S A;  1GFQ A;  4GF4 A;  1G90 A;  4BUM X;  3FYX A;  1ZHT A;  8PRN A;  3AA1 B;  5GV0 A;  3AA0 A;  3HW9 A;  4FES A;  4KRA A;  2KXP B;  5D5D A;  4LSH A;  1QJP A;  3WI5 A;  5DL8 A;  2W80 C;  3DA4 A;  3K19 A;  4FSP A;  3VY9 X;  4AYI D;  4Z3T A;  4PUX A;  2ZLD A;  3C5O A;  4GHB A;  4G76 A;  4GCS A;  3LK3 B;  1ZHZ A;  2X27 X;  4FRX A;  3T0S A;  2XG6 A;  3AA1 A;  5DL6 A;  4AKR B;  3AAE B;  6PRN A;  1BH3 A;  2KXP A;  2XE1 A;  2MNH A;  4O3Z A;  1Q9F A;  4O3X B;  2KZ7 B;  2QTK A;  3O0E A;  4RLB A;  3SY9 A;  3UAQ A;  2GE4 A;  2Y0K A;  3HOL A;  3HWB A;  3V8U A;  1MPF A;  7PRN A;  2F1V A;  2M07 A;  3LK3 A;  3POX A;  5FVN A;  5PRN A;  3SYS A;  3TZG A;  5ADX K;  3WI4 A;  5DL5 A;  2MHL A;  1OPF A;  3EMN X;  4N59 A;  3POU A;  2Y2X A;  4FOZ A;  4AKR A;  1THQ A;  3AAE A;  4O49 A;  4AYM C;  1GFO A;  4AYN A;  4XNL A;  1GFM A;  1P4T A;  2KZ7 A;  4FZN A;  4FUV A;  3RBH A;  4D65 A;  1MM5 A;  4GCQ A;  4RL9 A;  4E1T A;  5AFU L;  1ZHX A;  3PRN A;  4AFK A;  2OMF A;  2ZFG A;  3VZW X;  2KDY A;  2N2L A;  3LK2 B;  4LSF A;  4AZL A;  2XE2 A;  4XNK A;  2ODJ A;  3AA6 B;  1GFP A;  3VZT X;  4C69 X;  3POR A;  1OSM A;  2O4V A;  2POR A;  3HOE A;  4FRT A;  4KR8 A;  3T20 A;  1ZHW A;  2XTQ A;  3SYB A;  4U9C A;  4RLC A;  2FGR A;  5AFU K;  2JMM A;  2M06 A;  3T24 A;  5G26 A;  1BT9 A;  1PHO A;  3DA3 A;  3VE1 A;  4AYE C;  1BXW A;  3LK2 A;  1IZN B;  3QRC A;  4B61 A;  2K0L A;  3AA6 A;  3PQS A;  3JTY A;  4O4U A;  4FSO A;  4O4X A;  4LSE A;  3AA7 B;  4O3W A;  1QJ8 A;  1ORM A;  2PRN A;  4AUI A;  1Q9G A;  3AA0 B;  3AAA B;  2YNK A;  4RJW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...