3RBHA

Structure of alginate export protein alge from pseudomonas aeruginosa
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
451
structure length
428
Chain Sequence
KNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Alginate production protein AlgE
publication title Structural basis for alginate secretion across the bacterial outer membrane.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 124
structure length 428
sequence length 451
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 3rbhA00
5D5DA 4XNLA 4AZLA 4AFKA 5IYUA 3RBHA 4XNKA 4B61A
chains in the Genus database with same CATH superfamily
5DL5A 5B5EO 1Q9GA 2IWVA 3QRAA 3VE2A 2Y0KA 3AAAA 4N74A 4C4VB 2R4NA 3LK42 3PORA 3LK2A 4D64A 5H2FO 4RL9A 1G90A 3KVDD 2N2MA 5DL7A 3UPGA 3AA1A 3DWOX 4GCPA 2F1TA 4FUVA 5T5FA 3A0BO 3T20A 3BS0A 2XE5A 4U9CA 1S5LO 2LHFA 4E1TA 4FOZA 4B61A 1GFNA 3G7GA 1ZHYA 2W80C 2WJRA 4N75A 4PJ0O 5ADXK 4PR7A 5GTIO 3SY9A 4C4VA 2LFUA 5TISO 3LK3A 4AUIA 5EE2A 2R4OA 5G26A 2XE3A 1PHOA 3BRYA 4N58A 2GE4A 3FYXA 3LK41 5G3AA 3POUA 3NSGA 1YS5A 2MHLA 4G76A 4K3CA 3T0SA 3PQSA 4C69X 4JCHA 3EMNX 3A2SX 1ZHWA 5G38A 2ERVA 5KAFO 3RBHA 1T16A 3WU2O 4E1SA 4JFBA 7PRNA 2X9KA 2O4VA 4CTDA 2K0LA 2XE2A 2YPVA 1ZHTA 4AYEC 2KC0A 5AFUK 3HW9A 4O3XB 4RJXA 4O3WA 5JDPA 2FGQX 4KR4A 3O0EA 3VE1A 3BRZA 2M06A 3VZWX 4GF4A 3SZDA 3SYSA 5GV0A 2IWWA 5DL6A 2R89A 4AKRB 2XTQA 4BUMX 4G75A 2KXPA 1GFMA 2PRNA 2WVPA 1ZHXA 3NJTA 4LSIA 3DZMA 3V8UA 3UAQA 4FSPA 1E54A 4KR8A 4F4BA 1ZHZA 3POXA 2Y0LA 2ZLDA 2R4PA 4AKRA 3HOLA 4XNLA 2PORA 3SZVA 6PRNA 3VZTX 3AA6B 4IL6O 4K3BA 2M07A 2N2LA 4XNKA 3PF1A 1T1LA 2ZFGA 3DWNA 2XE1A 4FQEA 4AYID 4O49A 5FVNA 2AXTO 3SY7A 4RLBA 3JCUO 3SYBA 4O4UA 4FT6A 4AZLA 1PRNA 3AA7B 2FGRA 4FMSA 3DA3A 2KZ7B 3AAEB 2Y0HA 1GFOA 4KRAA 2Y2XA 1OSMA 3PGUA 4QQ1A 2Y7SA 2KDYA 4RJWA 4C00A 1MM4A 1IZNB 1MM5A 1MPFA 3C5OA 3WI5A 1GFQA 3DA4A 1ORMA 3A0HO 4O4XA 4D5UA 2XG6A 3AAAB 3AA0B 2F1CX 1BT9A 3PRNA 1BXWA 4FRTA 2ODJA 3AA7A 4AYNA 2YNKA 2X27X 4Z3TA 5D5DA 3AA1B 2J4UP 2K4TA 4AYDC 4AFKA 5IYUA 3K19A 1IZNA 3PQUA 4LSFA 3GP6A 4O3ZA 3VY8X 3QRCA 1Q9FA 3HWBA 4FZMA 2W81C 3AA0A 3UU2A 3VY9X 5ADXL 2XTRA 1HXXA 1P4TA 3LK3B 2QTKA 3KZIO 4FSOA 2R8AA 3JTYA 4GHBA 4LSEA 4O3YA 3HOEA 3T24A 3POQA 4N59A 2XMXA 1BH3A 4GCQA 1HXUA 4FRXA 3AA6A 2J1NA 4GCSA 4LSHA 4FZNA 5DL8A 1H6S1 2MNHA 5GTHO 4FESA 2JMMA 3PGRA 5KAIO 5PRNA 4AYMC 5E79O 1HXTA 3TZGA 3WI4A 1QJPA 3VZUX 4AKMA 4UB8O 5B66O 8PRNA 2F1VA 2OMFA 5AFUL 5G39A 2R88A 4PUXA 2JQYA 2WJQA 2R4LA 3LK2B 4RLCA 2KZ7A 3AAEA 1GFPA 1OPFA 1THQA 3PGSA 4FZLA 4UB6O 1QJ9A 4D65A 2KXPB 1QJ8A
chains in the Genus database with same CATH topology
5DL5A 1Q9GA 3QRAA 3VE2A 2Y0KA 3AAAA 3LK42 3PORA 3LK2A 4D64A 1G90A 4RL9A 3KVDD 2N2MA 5DL7A 3UPGA 3AA1A 4GCPA 2F1TA 4FUVA 3T20A 2XE5A 4U9CA 2LHFA 4E1TA 4FOZA 4B61A 1GFNA 3G7GA 1ZHYA 2W80C 5ADXK 3SY9A 2LFUA 4AUIA 3LK3A 5EE2A 5G26A 2XE3A 1PHOA 4N58A 2GE4A 3FYXA 3LK41 3POUA 3NSGA 1YS5A 2MHLA 4G76A 3T0SA 3PQSA 4C69X 4JCHA 3EMNX 3A2SX 1ZHWA 3RBHA 2ERVA 4E1SA 4JFBA 7PRNA 2O4VA 2K0LA 2XE2A 2YPVA 1ZHTA 4AYEC 2KC0A 5AFUK 3HW9A 4O3XB 4RJXA 4O3WA 5JDPA 2FGQX 4KR4A 3O0EA 3VE1A 2M06A 3VZWX 4GF4A 3SZDA 3SYSA 5GV0A 5DL6A 4AKRB 2XTQA 4BUMX 4G75A 2KXPA 1GFMA 2PRNA 1ZHXA 4LSIA 3V8UA 3UAQA 4FSPA 1E54A 4KR8A 4F4BA 1ZHZA 3POXA 2Y0LA 2ZLDA 4AKRA 3HOLA 4XNLA 2PORA 3SZVA 6PRNA 3VZTX 3AA6B 2M07A 2N2LA 4XNKA 2ZFGA 4AYID 2XE1A 4O49A 5FVNA 3SY7A 4RLBA 3SYBA 4AZLA 4O4UA 4FT6A 1PRNA 3AA7B 2FGRA 4FMSA 3DA3A 2KZ7B 3AAEB 2Y0HA 1GFOA 4KRAA 2Y2XA 1OSMA 4QQ1A 2Y7SA 2KDYA 4RJWA 1MM4A 1IZNB 1MM5A 1MPFA 3C5OA 3WI5A 1GFQA 3DA4A 1ORMA 4O4XA 4D5UA 2XG6A 3AAAB 3AA0B 1BT9A 3PRNA 1BXWA 4FRTA 2ODJA 3AA7A 4AYNA 2YNKA 2X27X 4Z3TA 5D5DA 3AA1B 2J4UP 2K4TA 4AYDC 4AFKA 5IYUA 3K19A 1IZNA 3PQUA 4LSFA 3GP6A 4O3ZA 3VY8X 3QRCA 1Q9FA 3HWBA 4FZMA 2W81C 3AA0A 3UU2A 3VY9X 5ADXL 2XTRA 1HXXA 1P4TA 3LK3B 2QTKA 4FSOA 4GHBA 4O3YA 3JTYA 4LSEA 3T24A 3HOEA 3POQA 4N59A 2XMXA 1BH3A 4GCQA 1HXUA 4FRXA 3AA6A 2J1NA 4GCSA 4LSHA 4FZNA 5DL8A 1H6S1 2MNHA 4FESA 2JMMA 4AYMC 5PRNA 1HXTA 3TZGA 3WI4A 1QJPA 3VZUX 4AKMA 8PRNA 2F1VA 2OMFA 5AFUL 4PUXA 4RLCA 3LK2B 5T5FA 2KZ7A 3AAEA 1GFPA 1OPFA 1THQA 4FZLA 1QJ9A 4D65A 2KXPB 1QJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  4XNL A;  4AZL A;  4AFK A;  5IYU A;  3RBH A;  4XNK A;  4B61 A; 
#chains in the Genus database with same CATH topology
 5DL5 A;  5B5E O;  1Q9G A;  2IWV A;  3QRA A;  3VE2 A;  2Y0K A;  3AAA A;  4N74 A;  4C4V B;  2R4N A;  3LK4 2;  3POR A;  3LK2 A;  4D64 A;  5H2F O;  4RL9 A;  1G90 A;  3KVD D;  2N2M A;  5DL7 A;  3UPG A;  3AA1 A;  3DWO X;  4GCP A;  2F1T A;  4FUV A;  5T5F A;  3A0B O;  3T20 A;  3BS0 A;  2XE5 A;  4U9C A;  1S5L O;  2LHF A;  4E1T A;  4FOZ A;  4B61 A;  1GFN A;  3G7G A;  1ZHY A;  2W80 C;  2WJR A;  4N75 A;  4PJ0 O;  5ADX K;  4PR7 A;  5GTI O;  3SY9 A;  4C4V A;  2LFU A;  5TIS O;  3LK3 A;  4AUI A;  5EE2 A;  2R4O A;  5G26 A;  2XE3 A;  1PHO A;  3BRY A;  4N58 A;  2GE4 A;  3FYX A;  3LK4 1;  5G3A A;  3POU A;  3NSG A;  1YS5 A;  2MHL A;  4G76 A;  4K3C A;  3T0S A;  3PQS A;  4C69 X;  4JCH A;  3EMN X;  3A2S X;  1ZHW A;  5G38 A;  2ERV A;  5KAF O;  3RBH A;  1T16 A;  3WU2 O;  4E1S A;  4JFB A;  7PRN A;  2X9K A;  2O4V A;  4CTD A;  2K0L A;  2XE2 A;  2YPV A;  1ZHT A;  4AYE C;  2KC0 A;  5AFU K;  3HW9 A;  4O3X B;  4RJX A;  4O3W A;  5JDP A;  2FGQ X;  4KR4 A;  3O0E A;  3VE1 A;  3BRZ A;  2M06 A;  3VZW X;  4GF4 A;  3SZD A;  3SYS A;  5GV0 A;  2IWW A;  5DL6 A;  2R89 A;  4AKR B;  2XTQ A;  4BUM X;  4G75 A;  2KXP A;  1GFM A;  2PRN A;  2WVP A;  1ZHX A;  3NJT A;  4LSI A;  3DZM A;  3V8U A;  3UAQ A;  4FSP A;  1E54 A;  4KR8 A;  4F4B A;  1ZHZ A;  3POX A;  2Y0L A;  2ZLD A;  2R4P A;  4AKR A;  3HOL A;  4XNL A;  2POR A;  3SZV A;  6PRN A;  3VZT X;  3AA6 B;  4IL6 O;  4K3B A;  2M07 A;  2N2L A;  4XNK A;  3PF1 A;  1T1L A;  2ZFG A;  3DWN A;  2XE1 A;  4FQE A;  4AYI D;  4O49 A;  5FVN A;  2AXT O;  3SY7 A;  4RLB A;  3JCU O;  3SYB A;  4O4U A;  4FT6 A;  4AZL A;  1PRN A;  3AA7 B;  2FGR A;  4FMS A;  3DA3 A;  2KZ7 B;  3AAE B;  2Y0H A;  1GFO A;  4KRA A;  2Y2X A;  1OSM A;  3PGU A;  4QQ1 A;  2Y7S A;  2KDY A;  4RJW A;  4C00 A;  1MM4 A;  1IZN B;  1MM5 A;  1MPF A;  3C5O A;  3WI5 A;  1GFQ A;  3DA4 A;  1ORM A;  3A0H O;  4O4X A;  4D5U A;  2XG6 A;  3AAA B;  3AA0 B;  2F1C X;  1BT9 A;  3PRN A;  1BXW A;  4FRT A;  2ODJ A;  3AA7 A;  4AYN A;  2YNK A;  2X27 X;  4Z3T A;  5D5D A;  3AA1 B;  2J4U P;  2K4T A;  4AYD C;  4AFK A;  5IYU A;  3K19 A;  1IZN A;  3PQU A;  4LSF A;  3GP6 A;  4O3Z A;  3VY8 X;  3QRC A;  1Q9F A;  3HWB A;  4FZM A;  2W81 C;  3AA0 A;  3UU2 A;  3VY9 X;  5ADX L;  2XTR A;  1HXX A;  1P4T A;  3LK3 B;  2QTK A;  3KZI O;  4FSO A;  2R8A A;  3JTY A;  4GHB A;  4LSE A;  4O3Y A;  3HOE A;  3T24 A;  3POQ A;  4N59 A;  2XMX A;  1BH3 A;  4GCQ A;  1HXU A;  4FRX A;  3AA6 A;  2J1N A;  4GCS A;  4LSH A;  4FZN A;  5DL8 A;  1H6S 1;  2MNH A;  5GTH O;  4FES A;  2JMM A;  3PGR A;  5KAI O;  5PRN A;  4AYM C;  5E79 O;  1HXT A;  3TZG A;  3WI4 A;  1QJP A;  3VZU X;  4AKM A;  4UB8 O;  5B66 O;  8PRN A;  2F1V A;  2OMF A;  5AFU L;  5G39 A;  2R88 A;  4PUX A;  2JQY A;  2WJQ A;  2R4L A;  3LK2 B;  4RLC A;  2KZ7 A;  3AAE A;  1GFP A;  1OPF A;  1THQ A;  3PGS A;  4FZL A;  4UB6 O;  1QJ9 A;  4D65 A;  2KXP B;  1QJ8 A; 
#chains in the Genus database with same CATH homology
 5DL5 A;  1Q9G A;  3QRA A;  3VE2 A;  2Y0K A;  3AAA A;  3LK4 2;  3POR A;  3LK2 A;  4D64 A;  1G90 A;  4RL9 A;  3KVD D;  2N2M A;  5DL7 A;  3UPG A;  3AA1 A;  4GCP A;  2F1T A;  4FUV A;  3T20 A;  2XE5 A;  4U9C A;  2LHF A;  4E1T A;  4FOZ A;  4B61 A;  1GFN A;  3G7G A;  1ZHY A;  2W80 C;  5ADX K;  3SY9 A;  2LFU A;  4AUI A;  3LK3 A;  5EE2 A;  5G26 A;  2XE3 A;  1PHO A;  4N58 A;  2GE4 A;  3FYX A;  3LK4 1;  3POU A;  3NSG A;  1YS5 A;  2MHL A;  4G76 A;  3T0S A;  3PQS A;  4C69 X;  4JCH A;  3EMN X;  3A2S X;  1ZHW A;  3RBH A;  2ERV A;  4E1S A;  4JFB A;  7PRN A;  2O4V A;  2K0L A;  2XE2 A;  2YPV A;  1ZHT A;  4AYE C;  2KC0 A;  5AFU K;  3HW9 A;  4O3X B;  4RJX A;  4O3W A;  5JDP A;  2FGQ X;  4KR4 A;  3O0E A;  3VE1 A;  2M06 A;  3VZW X;  4GF4 A;  3SZD A;  3SYS A;  5GV0 A;  5DL6 A;  4AKR B;  2XTQ A;  4BUM X;  4G75 A;  2KXP A;  1GFM A;  2PRN A;  1ZHX A;  4LSI A;  3V8U A;  3UAQ A;  4FSP A;  1E54 A;  4KR8 A;  4F4B A;  1ZHZ A;  3POX A;  2Y0L A;  2ZLD A;  4AKR A;  3HOL A;  4XNL A;  2POR A;  3SZV A;  6PRN A;  3VZT X;  3AA6 B;  2M07 A;  2N2L A;  4XNK A;  2ZFG A;  4AYI D;  2XE1 A;  4O49 A;  5FVN A;  3SY7 A;  4RLB A;  3SYB A;  4AZL A;  4O4U A;  4FT6 A;  1PRN A;  3AA7 B;  2FGR A;  4FMS A;  3DA3 A;  2KZ7 B;  3AAE B;  2Y0H A;  1GFO A;  4KRA A;  2Y2X A;  1OSM A;  4QQ1 A;  2Y7S A;  2KDY A;  4RJW A;  1MM4 A;  1IZN B;  1MM5 A;  1MPF A;  3C5O A;  3WI5 A;  1GFQ A;  3DA4 A;  1ORM A;  4O4X A;  4D5U A;  2XG6 A;  3AAA B;  3AA0 B;  1BT9 A;  3PRN A;  1BXW A;  4FRT A;  2ODJ A;  3AA7 A;  4AYN A;  2YNK A;  2X27 X;  4Z3T A;  5D5D A;  3AA1 B;  2J4U P;  2K4T A;  4AYD C;  4AFK A;  5IYU A;  3K19 A;  1IZN A;  3PQU A;  4LSF A;  3GP6 A;  4O3Z A;  3VY8 X;  3QRC A;  1Q9F A;  3HWB A;  4FZM A;  2W81 C;  3AA0 A;  3UU2 A;  3VY9 X;  5ADX L;  2XTR A;  1HXX A;  1P4T A;  3LK3 B;  2QTK A;  4FSO A;  4GHB A;  4O3Y A;  3JTY A;  4LSE A;  3T24 A;  3HOE A;  3POQ A;  4N59 A;  2XMX A;  1BH3 A;  4GCQ A;  1HXU A;  4FRX A;  3AA6 A;  2J1N A;  4GCS A;  4LSH A;  4FZN A;  5DL8 A;  1H6S 1;  2MNH A;  4FES A;  2JMM A;  4AYM C;  5PRN A;  1HXT A;  3TZG A;  3WI4 A;  1QJP A;  3VZU X;  4AKM A;  8PRN A;  2F1V A;  2OMF A;  5AFU L;  4PUX A;  4RLC A;  3LK2 B;  5T5F A;  2KZ7 A;  3AAE A;  1GFP A;  1OPF A;  1THQ A;  4FZL A;  1QJ9 A;  4D65 A;  2KXP B;  1QJ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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