3RBHA

Structure of alginate export protein alge from pseudomonas aeruginosa
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
451
structure length
428
Chain Sequence
KNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alginate production protein AlgE
publication title Structural basis for alginate secretion across the bacterial outer membrane.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 124
structure length 428
sequence length 451
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 3rbhA00
4AFKA 4XNLA 3RBHA 4B61A 5IYUA 4XNKA 5D5DA 4AZLA
chains in the Genus database with same CATH superfamily
2FGQX 3BRZA 3KZIO 4UB6O 1HXTA 2YPVA 5DL5A 3VZUX 4FESA 2QTKA 4PR7A 1H6S1 4KR8A 1S5LO 4FSPA 3SYBA 5DL6A 4E1TA 8PRNA 2LHFA 2M06A 4O4UA 1PHOA 3LK3B 3PGRA 1ZHZA 2AXTO 5ADXL 2XE5A 3DA3A 2PRNA 3AAAB 1THQA 2XG6A 3SZDA 3AA7A 3NSGA 2KXPA 3FYXA 1ZHWA 3LK41 4C4VB 2ZLDA 4KR4A 5KAFO 2GE4A 2ZFGA 2R4PA 3SY9A 4AYNA 4FZMA 5IYUA 1QJ9A 4C69X 2MHLA 2R4OA 5B66O 2F1VA 4BUMX 5ADXK 3LK2B 4F4BA 3T20A 2ERVA 2F1CX 3PQUA 5DL7A 2Y2XA 5TISO 1ZHYA 3PGSA 1GFQA 1GFOA 2R89A 3AA0A 2X27X 3POXA 4GCQA 4O3XB 2IWVA 2J4UP 4K3BA 5AFUK 3A0BO 1BH3A 5G39A 3HW9A 2XMXA 1IZNA 4Z3TA 3JCUO 3AA1A 3WU2O 4GHBA 4D65A 3BS0A 4PUXA 5GV0A 3O0EA 2XE2A 1GFPA 4FOZA 2O4VA 4PJ0O 4JCHA 4N58A 4AKMA 4AKRA 5B5EO 1ZHTA 2JQYA 4G75A 2OMFA 3AA7B 1E54A 1MM5A 2KXPB 4GCSA 1QJ8A 2LFUA 4UB8O 2YNKA 3SYSA 3UAQA 2XTQA 4AYDC 1G90A 4LSHA 3A2SX 5G26A 5AFUL 3WI4A 4N59A 3NJTA 3T24A 4AYMC 1T16A 3HOEA 2W80C 2FGRA 4U9CA 1MPFA 3HOLA 4FZNA 4E1SA 5H2FO 4AZLA 2Y0KA 3EMNX 2KZ7A 1PRNA 5FVNA 5PRNA 2R8AA 2WVPA 3AA0B 1GFMA 3C5OA 3POUA 5JDPA 3LK42 3TZGA 4FZLA 4O3WA 1ZHXA 5KAIO 1BXWA 1IZNB 2MNHA 1HXXA 2Y0HA 4K3CA 3AA1B 2W81C 2KC0A 4RLBA 3DZMA 4FUVA 4FRTA 3AA6A 4QQ1A 4FRXA 3VY8X 1OPFA 2PORA 2X9KA 1YS5A 1P4TA 3DWOX 3HWBA 3GP6A 3DWNA 5DL8A 3SY7A 1OSMA 4LSFA 1QJPA 3PORA 4LSIA 3SZVA 2Y0LA 4FMSA 5GTIO 5T5FA 4AFKA 4JFBA 3BRYA 3VY9X 4B61A 4C00A 1Q9GA 3DA4A 2R4NA 2ODJA 3VE2A 4D5UA 2WJQA 3AAEA 3KVDD 2XTRA 2KDYA 3POQA 5G3AA 3K19A 2IWWA 2Y7SA 2N2MA 4GCPA 4RJXA 3V8UA 2N2LA 4LSEA 4FSOA 2F1TA 3VZTX 7PRNA 2KZ7B 4CTDA 4RL9A 3PF1A 3PGUA 4FT6A 4XNLA 3JTYA 3RBHA 4AKRB 3VE1A 3WI5A 4N75A 3T0SA 5D5DA 1BT9A 4AYID 4KRAA 4O49A 4D64A 2WJRA 3LK3A 4O3YA 4O3ZA 1GFNA 3PRNA 4AYEC 2J1NA 3AA6B 3AAAA 5GTHO 2K0LA 3G7GA 1MM4A 1HXUA 1T1LA 4G76A 4C4VA 2XE3A 6PRNA 2M07A 4RLCA 3VZWX 4XNKA 1ORMA 5E79O 3QRAA 3PQSA 3UPGA 4RJWA 2R88A 4AUIA 3LK2A 2JMMA 3A0HO 2XE1A 3AAEB 3UU2A 1Q9FA 5G38A 4N74A 3QRCA 4FQEA 4GF4A 2R4LA 4O4XA 5EE2A 2K4TA 4IL6O
chains in the Genus database with same CATH topology
2FGQX 5DL5A 3VZUX 1HXTA 2YPVA 4FESA 2QTKA 1H6S1 4KR8A 4FSPA 3SYBA 5DL6A 4E1TA 8PRNA 2LHFA 2M06A 4O4UA 1PHOA 3LK3B 1ZHZA 5ADXL 2XE5A 3DA3A 2PRNA 3AAAB 1THQA 2XG6A 3SZDA 3AA7A 3NSGA 2KXPA 3FYXA 1ZHWA 3LK41 2ZLDA 4KR4A 2GE4A 2ZFGA 3SY9A 4AYNA 4FZMA 5IYUA 1QJ9A 4C69X 2MHLA 2F1VA 4BUMX 5ADXK 3LK2B 4F4BA 3T20A 2ERVA 3PQUA 5DL7A 2Y2XA 1ZHYA 1GFQA 1GFOA 3AA0A 2X27X 3POXA 4GCQA 4O3XB 2J4UP 5AFUK 1BH3A 3HW9A 2XMXA 1IZNA 4Z3TA 4D65A 3AA1A 4GHBA 4PUXA 5GV0A 3O0EA 2XE2A 1GFPA 4FOZA 2O4VA 4JCHA 4N58A 4AKMA 4AKRA 1ZHTA 4G75A 2OMFA 3AA7B 1E54A 1MM5A 2KXPB 4GCSA 1QJ8A 2LFUA 3SYSA 2YNKA 3UAQA 2XTQA 4AYDC 1G90A 4LSHA 3A2SX 5G26A 5AFUL 3WI4A 4N59A 3T24A 4AYMC 3HOEA 2W80C 2FGRA 4U9CA 1MPFA 3HOLA 4FZNA 4E1SA 4AZLA 2Y0KA 3EMNX 2KZ7A 1PRNA 5FVNA 5PRNA 3AA0B 1GFMA 3C5OA 3POUA 5JDPA 3LK42 3TZGA 4FZLA 4O3WA 1ZHXA 1BXWA 1IZNB 2MNHA 1HXXA 2Y0HA 3AA1B 2W81C 2KC0A 4RLBA 4FUVA 4FRTA 3AA6A 4QQ1A 4FRXA 3VY8X 1OPFA 2PORA 3HWBA 1YS5A 1P4TA 5DL8A 4AKRB 3GP6A 3SY7A 1OSMA 4LSFA 1QJPA 3PORA 4LSIA 3SZVA 2Y0LA 4FMSA 5T5FA 4AFKA 4JFBA 3VY9X 4B61A 1Q9GA 3DA4A 2ODJA 3VE2A 4D5UA 3AAEA 3KVDD 2XTRA 2KDYA 3POQA 3K19A 2Y7SA 2N2MA 4GCPA 4RJXA 3V8UA 2N2LA 4LSEA 4FSOA 2F1TA 3VZTX 7PRNA 2KZ7B 4RL9A 4FT6A 4XNLA 3JTYA 3RBHA 3VE1A 3WI5A 3T0SA 5D5DA 1BT9A 4AYID 4KRAA 4O49A 4D64A 3LK3A 4O3YA 4O3ZA 1GFNA 3PRNA 4AYEC 2J1NA 3AA6B 3AAAA 2K0LA 3G7GA 1MM4A 1HXUA 4G76A 2XE3A 6PRNA 2M07A 4RLCA 3VZWX 4XNKA 1ORMA 3UPGA 3QRAA 3PQSA 4RJWA 4AUIA 3LK2A 2JMMA 2XE1A 3AAEB 3UU2A 1Q9FA 3QRCA 4GF4A 4O4XA 5EE2A 2K4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AFK A;  4XNL A;  3RBH A;  4B61 A;  5IYU A;  4XNK A;  5D5D A;  4AZL A; 
#chains in the Genus database with same CATH topology
 2FGQ X;  3BRZ A;  3KZI O;  4UB6 O;  1HXT A;  2YPV A;  5DL5 A;  3VZU X;  4FES A;  2QTK A;  4PR7 A;  1H6S 1;  4KR8 A;  1S5L O;  4FSP A;  3SYB A;  5DL6 A;  4E1T A;  8PRN A;  2LHF A;  2M06 A;  4O4U A;  1PHO A;  3LK3 B;  3PGR A;  1ZHZ A;  2AXT O;  5ADX L;  2XE5 A;  3DA3 A;  2PRN A;  3AAA B;  1THQ A;  2XG6 A;  3SZD A;  3AA7 A;  3NSG A;  2KXP A;  3FYX A;  1ZHW A;  3LK4 1;  4C4V B;  2ZLD A;  4KR4 A;  5KAF O;  2GE4 A;  2ZFG A;  2R4P A;  3SY9 A;  4AYN A;  4FZM A;  5IYU A;  1QJ9 A;  4C69 X;  2MHL A;  2R4O A;  5B66 O;  2F1V A;  4BUM X;  5ADX K;  3LK2 B;  4F4B A;  3T20 A;  2ERV A;  2F1C X;  3PQU A;  5DL7 A;  2Y2X A;  5TIS O;  1ZHY A;  3PGS A;  1GFQ A;  1GFO A;  2R89 A;  3AA0 A;  2X27 X;  3POX A;  4GCQ A;  4O3X B;  2IWV A;  2J4U P;  4K3B A;  5AFU K;  3A0B O;  1BH3 A;  5G39 A;  3HW9 A;  2XMX A;  1IZN A;  4Z3T A;  3JCU O;  3AA1 A;  3WU2 O;  4GHB A;  4D65 A;  3BS0 A;  4PUX A;  5GV0 A;  3O0E A;  2XE2 A;  1GFP A;  4FOZ A;  2O4V A;  4PJ0 O;  4JCH A;  4N58 A;  4AKM A;  4AKR A;  5B5E O;  1ZHT A;  2JQY A;  4G75 A;  2OMF A;  3AA7 B;  1E54 A;  1MM5 A;  2KXP B;  4GCS A;  1QJ8 A;  2LFU A;  4UB8 O;  2YNK A;  3SYS A;  3UAQ A;  2XTQ A;  4AYD C;  1G90 A;  4LSH A;  3A2S X;  5G26 A;  5AFU L;  3WI4 A;  4N59 A;  3NJT A;  3T24 A;  4AYM C;  1T16 A;  3HOE A;  2W80 C;  2FGR A;  4U9C A;  1MPF A;  3HOL A;  4FZN A;  4E1S A;  5H2F O;  4AZL A;  2Y0K A;  3EMN X;  2KZ7 A;  1PRN A;  5FVN A;  5PRN A;  2R8A A;  2WVP A;  3AA0 B;  1GFM A;  3C5O A;  3POU A;  5JDP A;  3LK4 2;  3TZG A;  4FZL A;  4O3W A;  1ZHX A;  5KAI O;  1BXW A;  1IZN B;  2MNH A;  1HXX A;  2Y0H A;  4K3C A;  3AA1 B;  2W81 C;  2KC0 A;  4RLB A;  3DZM A;  4FUV A;  4FRT A;  3AA6 A;  4QQ1 A;  4FRX A;  3VY8 X;  1OPF A;  2POR A;  2X9K A;  1YS5 A;  1P4T A;  3DWO X;  3HWB A;  3GP6 A;  3DWN A;  5DL8 A;  3SY7 A;  1OSM A;  4LSF A;  1QJP A;  3POR A;  4LSI A;  3SZV A;  2Y0L A;  4FMS A;  5GTI O;  5T5F A;  4AFK A;  4JFB A;  3BRY A;  3VY9 X;  4B61 A;  4C00 A;  1Q9G A;  3DA4 A;  2R4N A;  2ODJ A;  3VE2 A;  4D5U A;  2WJQ A;  3AAE A;  3KVD D;  2XTR A;  2KDY A;  3POQ A;  5G3A A;  3K19 A;  2IWW A;  2Y7S A;  2N2M A;  4GCP A;  4RJX A;  3V8U A;  2N2L A;  4LSE A;  4FSO A;  2F1T A;  3VZT X;  7PRN A;  2KZ7 B;  4CTD A;  4RL9 A;  3PF1 A;  3PGU A;  4FT6 A;  4XNL A;  3JTY A;  3RBH A;  4AKR B;  3VE1 A;  3WI5 A;  4N75 A;  3T0S A;  5D5D A;  1BT9 A;  4AYI D;  4KRA A;  4O49 A;  4D64 A;  2WJR A;  3LK3 A;  4O3Y A;  4O3Z A;  1GFN A;  3PRN A;  4AYE C;  2J1N A;  3AA6 B;  3AAA A;  5GTH O;  2K0L A;  3G7G A;  1MM4 A;  1HXU A;  1T1L A;  4G76 A;  4C4V A;  2XE3 A;  6PRN A;  2M07 A;  4RLC A;  3VZW X;  4XNK A;  1ORM A;  5E79 O;  3QRA A;  3PQS A;  3UPG A;  4RJW A;  2R88 A;  4AUI A;  3LK2 A;  2JMM A;  3A0H O;  2XE1 A;  3AAE B;  3UU2 A;  1Q9F A;  5G38 A;  4N74 A;  3QRC A;  4FQE A;  4GF4 A;  2R4L A;  4O4X A;  5EE2 A;  2K4T A;  4IL6 O; 
#chains in the Genus database with same CATH homology
 2FGQ X;  5DL5 A;  3VZU X;  1HXT A;  2YPV A;  4FES A;  2QTK A;  1H6S 1;  4KR8 A;  4FSP A;  3SYB A;  5DL6 A;  4E1T A;  8PRN A;  2LHF A;  2M06 A;  4O4U A;  1PHO A;  3LK3 B;  1ZHZ A;  5ADX L;  2XE5 A;  3DA3 A;  2PRN A;  3AAA B;  1THQ A;  2XG6 A;  3SZD A;  3AA7 A;  3NSG A;  2KXP A;  3FYX A;  1ZHW A;  3LK4 1;  2ZLD A;  4KR4 A;  2GE4 A;  2ZFG A;  3SY9 A;  4AYN A;  4FZM A;  5IYU A;  1QJ9 A;  4C69 X;  2MHL A;  2F1V A;  4BUM X;  5ADX K;  3LK2 B;  4F4B A;  3T20 A;  2ERV A;  3PQU A;  5DL7 A;  2Y2X A;  1ZHY A;  1GFQ A;  1GFO A;  3AA0 A;  2X27 X;  3POX A;  4GCQ A;  4O3X B;  2J4U P;  5AFU K;  1BH3 A;  3HW9 A;  2XMX A;  1IZN A;  4Z3T A;  4D65 A;  3AA1 A;  4GHB A;  4PUX A;  5GV0 A;  3O0E A;  2XE2 A;  1GFP A;  4FOZ A;  2O4V A;  4JCH A;  4N58 A;  4AKM A;  4AKR A;  1ZHT A;  4G75 A;  2OMF A;  3AA7 B;  1E54 A;  1MM5 A;  2KXP B;  4GCS A;  1QJ8 A;  2LFU A;  3SYS A;  2YNK A;  3UAQ A;  2XTQ A;  4AYD C;  1G90 A;  4LSH A;  3A2S X;  5G26 A;  5AFU L;  3WI4 A;  4N59 A;  3T24 A;  4AYM C;  3HOE A;  2W80 C;  2FGR A;  4U9C A;  1MPF A;  3HOL A;  4FZN A;  4E1S A;  4AZL A;  2Y0K A;  3EMN X;  2KZ7 A;  1PRN A;  5FVN A;  5PRN A;  3AA0 B;  1GFM A;  3C5O A;  3POU A;  5JDP A;  3LK4 2;  3TZG A;  4FZL A;  4O3W A;  1ZHX A;  1BXW A;  1IZN B;  2MNH A;  1HXX A;  2Y0H A;  3AA1 B;  2W81 C;  2KC0 A;  4RLB A;  4FUV A;  4FRT A;  3AA6 A;  4QQ1 A;  4FRX A;  3VY8 X;  1OPF A;  2POR A;  3HWB A;  1YS5 A;  1P4T A;  5DL8 A;  4AKR B;  3GP6 A;  3SY7 A;  1OSM A;  4LSF A;  1QJP A;  3POR A;  4LSI A;  3SZV A;  2Y0L A;  4FMS A;  5T5F A;  4AFK A;  4JFB A;  3VY9 X;  4B61 A;  1Q9G A;  3DA4 A;  2ODJ A;  3VE2 A;  4D5U A;  3AAE A;  3KVD D;  2XTR A;  2KDY A;  3POQ A;  3K19 A;  2Y7S A;  2N2M A;  4GCP A;  4RJX A;  3V8U A;  2N2L A;  4LSE A;  4FSO A;  2F1T A;  3VZT X;  7PRN A;  2KZ7 B;  4RL9 A;  4FT6 A;  4XNL A;  3JTY A;  3RBH A;  3VE1 A;  3WI5 A;  3T0S A;  5D5D A;  1BT9 A;  4AYI D;  4KRA A;  4O49 A;  4D64 A;  3LK3 A;  4O3Y A;  4O3Z A;  1GFN A;  3PRN A;  4AYE C;  2J1N A;  3AA6 B;  3AAA A;  2K0L A;  3G7G A;  1MM4 A;  1HXU A;  4G76 A;  2XE3 A;  6PRN A;  2M07 A;  4RLC A;  3VZW X;  4XNK A;  1ORM A;  3UPG A;  3QRA A;  3PQS A;  4RJW A;  4AUI A;  3LK2 A;  2JMM A;  2XE1 A;  3AAE B;  3UU2 A;  1Q9F A;  3QRC A;  4GF4 A;  4O4X A;  5EE2 A;  2K4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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