3RBHA

Structure of alginate export protein alge from pseudomonas aeruginosa
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
451
structure length
428
Chain Sequence
b'KNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alginate production protein AlgE
publication title Structural basis for alginate secretion across the bacterial outer membrane.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 124
structure length 428
sequence length 451
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 3rbhA00
4B61A 5IYUA 3RBHA 5D5DA 4XNLA 4AZLA 4AFKA 4XNKA
chains in the Genus database with same CATH superfamily
1GFPA 5GV0A 3AA0A 2YNKA 3DZMA 3PGUA 4RLCA 2R4OA 3PGRA 3T20A 4N74A 4JCHA 4FSPA 4O4UA 3A2SX 2LHFA 3AAEA 4GCPA 4O3ZA 5DL7A 4FSOA 4GHBA 5KAIO 4D65A 2F1TA 4FZMA 4RL9A 3JCUO 1BXWA 3HW9A 4GCQA 3WI4A 2LFUA 3DA3A 3DWOX 3UAQA 2XE1A 2ERVA 3HWBA 2AXTO 3T0SA 3VE1A 2KZ7B 3PORA 2K4TA 4PUXA 4AYEC 4KRAA 1G90A 3POQA 3SYBA 1ORMA 3FYXA 3SZDA 3PF1A 2XE2A 2PRNA 3VY8X 1Q9GA 4F4BA 1T16A 2R8AA 2XE3A 2R4LA 3KVDD 3UU2A 5JDPA 1GFMA 2ZFGA 2R4NA 2M06A 4N75A 4LSHA 3AA1B 4O4XA 2KXPB 3LK2B 4CTDA 2ZLDA 3V8UA 3LK3A 1MPFA 3AAAA 3AA7B 4FZNA 1OPFA 5KAFO 3JTYA 4GCSA 3AA0B 4PR7A 1MM5A 4AYNA 2R4PA 2J4UP 5AFUL 4RJWA 1GFOA 3AA6A 3GP6A 3WU2O 3BS0A 4C4VB 1E54A 1IZNA 2Y2XA 4XNLA 4N58A 2IWWA 2OMFA 2FGRA 2IWVA 1QJ9A 2ODJA 5DL8A 4AKRA 3T24A 1HXXA 4FZLA 4RJXA 3VZWX 3QRCA 3UPGA 2QTKA 3DWNA 2O4VA 2N2MA 2XG6A 3HOEA 2J1NA 2N2LA 4O49A 3EMNX 4LSEA 3QRAA 4LSIA 5T5FA 5D5DA 4QQ1A 3VZTX 1HXUA 5EE2A 3PQUA 2JMMA 4O3YA 4D64A 4JFBA 5DL5A 4AYID 4B61A 2Y7SA 2WJQA 4UB6O 5AFUK 2XTRA 5DL6A 1T1LA 3BRYA 4FMSA 5G26A 2MNHA 3AAAB 3LK41 1GFQA 2Y0KA 3HOLA 1THQA 4UB8O 5E79O 3C5OA 5IYUA 4FUVA 1ZHZA 4GF4A 2X9KA 2Y0HA 3AAEB 3RBHA 4D5UA 4N59A 4O3WA 4AZLA 3AA6B 3SY9A 3VZUX 4PJ0O 1BH3A 3A0BO 1S5LO 4XNKA 1ZHTA 3DA4A 3SYSA 4AYDC 4AYMC 3PRNA 1HXTA 4LSFA 3K19A 4RLBA 4C00A 3NSGA 2W81C 3O0EA 1BT9A 4E1SA 3AA1A 4BUMX 1OSMA 1QJPA 3LK2A 2R89A 3WI5A 4FRXA 2XE5A 3POXA 5B66O 4IL6O 3NJTA 3VY9X 3G7GA 5FVNA 4KR8A 4FOZA 4E1TA 1PRNA 1QJ8A 4G76A 4U9CA 1GFNA 5G38A 8PRNA 5G39A 2KDYA 2XTQA 3VE2A 2F1VA 2PORA 2FGQX 1P4TA 6PRNA 2XMXA 3LK3B 2KC0A 2MHLA 5GTIO 2YPVA 2WJRA 3PQSA 4C4VA 5ADXK 1Q9FA 5PRNA 2JQYA 4Z3TA 4FT6A 2WVPA 4AKMA 1ZHXA 2KZ7A 2Y0LA 4G75A 4K3BA 4FQEA 5TISO 2F1CX 5ADXL 4C69X 1IZNB 3A0HO 3SY7A 3BRZA 5B5EO 2R88A 1PHOA 4AUIA 4AKRB 1ZHWA 3PGSA 3POUA 4FESA 3SZVA 4AFKA 1YS5A 2K0LA 4K3CA 1ZHYA 4KR4A 4O3XB 5GTHO 2KXPA 3TZGA 5H2FO 2W80C 3KZIO 2GE4A 5G3AA 1H6S1 1MM4A 2M07A 4FRTA 3LK42 7PRNA 2X27X 3AA7A
chains in the Genus database with same CATH topology
1GFPA 5GV0A 3AA0A 2YNKA 4RLCA 3T20A 4JCHA 4FSPA 4O4UA 3A2SX 2LHFA 3AAEA 4GCPA 4O3ZA 5DL7A 4FSOA 4GHBA 4D65A 2F1TA 4FZMA 4RL9A 1BXWA 3HW9A 4GCQA 3WI4A 2LFUA 3DA3A 3UAQA 2XE1A 2ERVA 3HWBA 3VE1A 3T0SA 4AYEC 2KZ7B 3PORA 2K4TA 4PUXA 1G90A 4KRAA 3POQA 3SYBA 1ORMA 3FYXA 3SZDA 2XE2A 2PRNA 3VY8X 1Q9GA 4F4BA 2XE3A 3KVDD 3UU2A 5JDPA 1GFMA 2ZFGA 2M06A 4LSHA 3AA1B 4O4XA 2KXPB 3LK2B 2ZLDA 3V8UA 3LK3A 1MPFA 3AAAA 3AA7B 4FZNA 1OPFA 3JTYA 4GCSA 3AA0B 1MM5A 4AYNA 2J4UP 5AFUL 4RJWA 1GFOA 3AA6A 3GP6A 1E54A 1IZNA 2Y2XA 4XNLA 4N58A 2FGRA 2ODJA 2OMFA 1QJ9A 5DL8A 4AKRA 3T24A 1HXXA 4FZLA 4RJXA 3VZWX 3QRCA 3UPGA 2QTKA 2O4VA 2N2MA 2XG6A 3HOEA 2J1NA 2N2LA 4O49A 3EMNX 4LSEA 3QRAA 4LSIA 5T5FA 5D5DA 4QQ1A 3VZTX 1HXUA 5EE2A 3PQUA 2JMMA 4O3YA 4D64A 4JFBA 5DL5A 4AYID 4B61A 2Y7SA 5AFUK 2XTRA 5DL6A 5G26A 4FMSA 2MNHA 3AAAB 3LK41 1GFQA 2Y0KA 3HOLA 1THQA 3C5OA 5IYUA 4FUVA 1ZHZA 4GF4A 2Y0HA 3AAEB 3RBHA 4D5UA 4N59A 4O3WA 4AZLA 3AA6B 3SY9A 3VZUX 4E1TA 1BH3A 3SYSA 4XNKA 1ZHTA 3DA4A 4AYDC 4AYMC 3PRNA 1HXTA 4LSFA 3K19A 4RLBA 3NSGA 2W81C 3O0EA 1BT9A 4E1SA 3AA1A 4BUMX 1OSMA 1QJPA 3LK2A 3WI5A 4FRXA 2XE5A 3POXA 3VY9X 3G7GA 5FVNA 4KR8A 4FOZA 1PRNA 1QJ8A 4G76A 4U9CA 1GFNA 8PRNA 2KDYA 2XTQA 3VE2A 2F1VA 2PORA 2FGQX 1P4TA 6PRNA 2XMXA 3LK3B 2KC0A 2MHLA 5ADXK 2YPVA 3PQSA 1Q9FA 5PRNA 4Z3TA 4FT6A 4AKMA 1ZHXA 2KZ7A 2Y0LA 4G75A 5ADXL 4C69X 1IZNB 3SY7A 1PHOA 4AUIA 4AKRB 1ZHWA 3POUA 4FESA 3SZVA 4AFKA 1YS5A 2K0LA 1ZHYA 4KR4A 4O3XB 2KXPA 3TZGA 2W80C 2GE4A 1H6S1 1MM4A 2M07A 4FRTA 3LK42 7PRNA 2X27X 3AA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B61 A;  5IYU A;  3RBH A;  5D5D A;  4XNL A;  4AZL A;  4AFK A;  4XNK A; 
#chains in the Genus database with same CATH topology
 1GFP A;  5GV0 A;  3AA0 A;  2YNK A;  3DZM A;  3PGU A;  4RLC A;  2R4O A;  3PGR A;  3T20 A;  4N74 A;  4JCH A;  4FSP A;  4O4U A;  3A2S X;  2LHF A;  3AAE A;  4GCP A;  4O3Z A;  5DL7 A;  4FSO A;  4GHB A;  5KAI O;  4D65 A;  2F1T A;  4FZM A;  4RL9 A;  3JCU O;  1BXW A;  3HW9 A;  4GCQ A;  3WI4 A;  2LFU A;  3DA3 A;  3DWO X;  3UAQ A;  2XE1 A;  2ERV A;  3HWB A;  2AXT O;  3T0S A;  3VE1 A;  2KZ7 B;  3POR A;  2K4T A;  4PUX A;  4AYE C;  4KRA A;  1G90 A;  3POQ A;  3SYB A;  1ORM A;  3FYX A;  3SZD A;  3PF1 A;  2XE2 A;  2PRN A;  3VY8 X;  1Q9G A;  4F4B A;  1T16 A;  2R8A A;  2XE3 A;  2R4L A;  3KVD D;  3UU2 A;  5JDP A;  1GFM A;  2ZFG A;  2R4N A;  2M06 A;  4N75 A;  4LSH A;  3AA1 B;  4O4X A;  2KXP B;  3LK2 B;  4CTD A;  2ZLD A;  3V8U A;  3LK3 A;  1MPF A;  3AAA A;  3AA7 B;  4FZN A;  1OPF A;  5KAF O;  3JTY A;  4GCS A;  3AA0 B;  4PR7 A;  1MM5 A;  4AYN A;  2R4P A;  2J4U P;  5AFU L;  4RJW A;  1GFO A;  3AA6 A;  3GP6 A;  3WU2 O;  3BS0 A;  4C4V B;  1E54 A;  1IZN A;  2Y2X A;  4XNL A;  4N58 A;  2IWW A;  2OMF A;  2FGR A;  2IWV A;  1QJ9 A;  2ODJ A;  5DL8 A;  4AKR A;  3T24 A;  1HXX A;  4FZL A;  4RJX A;  3VZW X;  3QRC A;  3UPG A;  2QTK A;  3DWN A;  2O4V A;  2N2M A;  2XG6 A;  3HOE A;  2J1N A;  2N2L A;  4O49 A;  3EMN X;  4LSE A;  3QRA A;  4LSI A;  5T5F A;  5D5D A;  4QQ1 A;  3VZT X;  1HXU A;  5EE2 A;  3PQU A;  2JMM A;  4O3Y A;  4D64 A;  4JFB A;  5DL5 A;  4AYI D;  4B61 A;  2Y7S A;  2WJQ A;  4UB6 O;  5AFU K;  2XTR A;  5DL6 A;  1T1L A;  3BRY A;  4FMS A;  5G26 A;  2MNH A;  3AAA B;  3LK4 1;  1GFQ A;  2Y0K A;  3HOL A;  1THQ A;  4UB8 O;  5E79 O;  3C5O A;  5IYU A;  4FUV A;  1ZHZ A;  4GF4 A;  2X9K A;  2Y0H A;  3AAE B;  3RBH A;  4D5U A;  4N59 A;  4O3W A;  4AZL A;  3AA6 B;  3SY9 A;  3VZU X;  4PJ0 O;  1BH3 A;  3A0B O;  1S5L O;  4XNK A;  1ZHT A;  3DA4 A;  3SYS A;  4AYD C;  4AYM C;  3PRN A;  1HXT A;  4LSF A;  3K19 A;  4RLB A;  4C00 A;  3NSG A;  2W81 C;  3O0E A;  1BT9 A;  4E1S A;  3AA1 A;  4BUM X;  1OSM A;  1QJP A;  3LK2 A;  2R89 A;  3WI5 A;  4FRX A;  2XE5 A;  3POX A;  5B66 O;  4IL6 O;  3NJT A;  3VY9 X;  3G7G A;  5FVN A;  4KR8 A;  4FOZ A;  4E1T A;  1PRN A;  1QJ8 A;  4G76 A;  4U9C A;  1GFN A;  5G38 A;  8PRN A;  5G39 A;  2KDY A;  2XTQ A;  3VE2 A;  2F1V A;  2POR A;  2FGQ X;  1P4T A;  6PRN A;  2XMX A;  3LK3 B;  2KC0 A;  2MHL A;  5GTI O;  2YPV A;  2WJR A;  3PQS A;  4C4V A;  5ADX K;  1Q9F A;  5PRN A;  2JQY A;  4Z3T A;  4FT6 A;  2WVP A;  4AKM A;  1ZHX A;  2KZ7 A;  2Y0L A;  4G75 A;  4K3B A;  4FQE A;  5TIS O;  2F1C X;  5ADX L;  4C69 X;  1IZN B;  3A0H O;  3SY7 A;  3BRZ A;  5B5E O;  2R88 A;  1PHO A;  4AUI A;  4AKR B;  1ZHW A;  3PGS A;  3POU A;  4FES A;  3SZV A;  4AFK A;  1YS5 A;  2K0L A;  4K3C A;  1ZHY A;  4KR4 A;  4O3X B;  5GTH O;  2KXP A;  3TZG A;  5H2F O;  2W80 C;  3KZI O;  2GE4 A;  5G3A A;  1H6S 1;  1MM4 A;  2M07 A;  4FRT A;  3LK4 2;  7PRN A;  2X27 X;  3AA7 A; 
#chains in the Genus database with same CATH homology
 1GFP A;  5GV0 A;  3AA0 A;  2YNK A;  4RLC A;  3T20 A;  4JCH A;  4FSP A;  4O4U A;  3A2S X;  2LHF A;  3AAE A;  4GCP A;  4O3Z A;  5DL7 A;  4FSO A;  4GHB A;  4D65 A;  2F1T A;  4FZM A;  4RL9 A;  1BXW A;  3HW9 A;  4GCQ A;  3WI4 A;  2LFU A;  3DA3 A;  3UAQ A;  2XE1 A;  2ERV A;  3HWB A;  3VE1 A;  3T0S A;  4AYE C;  2KZ7 B;  3POR A;  2K4T A;  4PUX A;  1G90 A;  4KRA A;  3POQ A;  3SYB A;  1ORM A;  3FYX A;  3SZD A;  2XE2 A;  2PRN A;  3VY8 X;  1Q9G A;  4F4B A;  2XE3 A;  3KVD D;  3UU2 A;  5JDP A;  1GFM A;  2ZFG A;  2M06 A;  4LSH A;  3AA1 B;  4O4X A;  2KXP B;  3LK2 B;  2ZLD A;  3V8U A;  3LK3 A;  1MPF A;  3AAA A;  3AA7 B;  4FZN A;  1OPF A;  3JTY A;  4GCS A;  3AA0 B;  1MM5 A;  4AYN A;  2J4U P;  5AFU L;  4RJW A;  1GFO A;  3AA6 A;  3GP6 A;  1E54 A;  1IZN A;  2Y2X A;  4XNL A;  4N58 A;  2FGR A;  2ODJ A;  2OMF A;  1QJ9 A;  5DL8 A;  4AKR A;  3T24 A;  1HXX A;  4FZL A;  4RJX A;  3VZW X;  3QRC A;  3UPG A;  2QTK A;  2O4V A;  2N2M A;  2XG6 A;  3HOE A;  2J1N A;  2N2L A;  4O49 A;  3EMN X;  4LSE A;  3QRA A;  4LSI A;  5T5F A;  5D5D A;  4QQ1 A;  3VZT X;  1HXU A;  5EE2 A;  3PQU A;  2JMM A;  4O3Y A;  4D64 A;  4JFB A;  5DL5 A;  4AYI D;  4B61 A;  2Y7S A;  5AFU K;  2XTR A;  5DL6 A;  5G26 A;  4FMS A;  2MNH A;  3AAA B;  3LK4 1;  1GFQ A;  2Y0K A;  3HOL A;  1THQ A;  3C5O A;  5IYU A;  4FUV A;  1ZHZ A;  4GF4 A;  2Y0H A;  3AAE B;  3RBH A;  4D5U A;  4N59 A;  4O3W A;  4AZL A;  3AA6 B;  3SY9 A;  3VZU X;  4E1T A;  1BH3 A;  3SYS A;  4XNK A;  1ZHT A;  3DA4 A;  4AYD C;  4AYM C;  3PRN A;  1HXT A;  4LSF A;  3K19 A;  4RLB A;  3NSG A;  2W81 C;  3O0E A;  1BT9 A;  4E1S A;  3AA1 A;  4BUM X;  1OSM A;  1QJP A;  3LK2 A;  3WI5 A;  4FRX A;  2XE5 A;  3POX A;  3VY9 X;  3G7G A;  5FVN A;  4KR8 A;  4FOZ A;  1PRN A;  1QJ8 A;  4G76 A;  4U9C A;  1GFN A;  8PRN A;  2KDY A;  2XTQ A;  3VE2 A;  2F1V A;  2POR A;  2FGQ X;  1P4T A;  6PRN A;  2XMX A;  3LK3 B;  2KC0 A;  2MHL A;  5ADX K;  2YPV A;  3PQS A;  1Q9F A;  5PRN A;  4Z3T A;  4FT6 A;  4AKM A;  1ZHX A;  2KZ7 A;  2Y0L A;  4G75 A;  5ADX L;  4C69 X;  1IZN B;  3SY7 A;  1PHO A;  4AUI A;  4AKR B;  1ZHW A;  3POU A;  4FES A;  3SZV A;  4AFK A;  1YS5 A;  2K0L A;  1ZHY A;  4KR4 A;  4O3X B;  2KXP A;  3TZG A;  2W80 C;  2GE4 A;  1H6S 1;  1MM4 A;  2M07 A;  4FRT A;  3LK4 2;  7PRN A;  2X27 X;  3AA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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