2Y0HA

Crystal structure of pseudomonas aeruginosa opdl
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
389
structure length
361
Chain Sequence
LADSSAHLDLRNFYQLRDYRQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESDDMYIMGRDKAHASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords PROBABLE PORIN
publication title Crystal Structure of Pseudomonas Aeruginosa Opdl
rcsb
source organism Pseudomonas aeruginosa
total genus 92
structure length 361
sequence length 389
ec nomenclature
pdb deposition date 2010-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2y0hA01
2XE5A 2OMFA 3JTYA 3PRNA 2Y2XA 1PRNA 4LSEA 1BH3A 1OPFA 5DL7A 6PRNA 2ZLDA 4FRXA 2FGRA 2FGQX 4LSFA 4FOZA 3HWBA 3UU2A 2XE2A 2J4UP 3O0EA 1GFNA 3WI4A 4D65A 2Y0HA 3VZWX 3SYSA 1GFPA 2J1NA 3NSGA 3SZDA 3VZTX 3VZUX 3WI5A 3K19A 1HXXA 4AUIA 5DL8A 2QTKA 4RJXA 1GFMA 3UPGA 2O4VA 4KR8A 4RJWA 3A2SX 4GCSA 2Y0KA 1H6S1 2PRNA 3POUA 3T0SA 2XE3A 5JDPA 4FSPA 3SZVA 4D64A 1BT9A 3SY9A 7PRNA 1GFOA 3SYBA 1OSMA 4LSHA 1HXUA 3T24A 3T20A 2K4TA 2Y0LA 3FYXA 4BUMX 2ODJA 2PORA 3VY8X 4GCQA 1E54A 4FRTA 3PORA 4LSIA 1HXTA 2XE1A 3SY7A 4C69X 1MPFA 4JFBA 4KRAA 4KR4A 3POXA 1PHOA 5DL5A 4FT6A 5DL6A 4GCPA 2XG6A 3POQA 3VY9X 1GFQA 4FSOA 3HW9A 5PRNA 2ZFGA 4FMSA 8PRNA 5FVNA 4D5UA 3EMNX
chains in the Genus database with same CATH superfamily
2XE5A 2OMFA 3JTYA 2KZ7A 3AAEA 2Y2XA 3PRNA 2R89A 4U9CA 1PRNA 1S5LO 3AA6A 4LSEA 3AAAB 1BH3A 2JMMA 4XNLA 2F1CX 1OPFA 3AA7B 4FQEA 5DL7A 2LFUA 4E1TA 6PRNA 4CTDA 2ZLDA 3VE2A 1ZHWA 1ZHTA 2JQYA 4O4XA 4K3BA 5T5FA 3LK2B 4FRXA 2FGRA 4FUVA 1T16A 4RL9A 2FGQX 2X9KA 4O4UA 4F4BA 3KZIO 2GE4A 2KXPB 4AYDC 4LSFA 4FOZA 3HWBA 3UU2A 2W81C 2XE2A 2J4UP 4O3XB 2XMXA 1P4TA 5GTHO 2XTQA 4Z3TA 3A0HO 4G76A 2M07A 4K3CA 4FZMA 3V8UA 3O0EA 3HOEA 2AXTO 4C4VA 1GFNA 3WI4A 1BXWA 2K0LA 1MM5A 1Q9GA 5AFUK 4AKRA 4D65A 5B66O 2WVPA 3PF1A 3PGSA 2Y0HA 3DA3A 4IL6O 4UB8O 3SYSA 1GFPA 2YPVA 4XNKA 2J1NA 2R4NA 3AA0B 3NSGA 3SZDA 3VZTX 1ZHZA 3TZGA 3VZUX 3WU2O 4GHBA 3WI5A 4AYNA 3LK42 4N58A 4C00A 5AFUL 2R4PA 4N74A 5GV0A 3K19A 2KZ7B 1HXXA 3AAEB 4FESA 4AUIA 3AA1B 3A0BO 3AA6B 1ORMA 2ERVA 5DL8A 2N2LA 1ZHXA 2YNKA 4JCHA 2QTKA 4B61A 2R4OA 1IZNB 4RJXA 2R88A 3DWOX 5EE2A 5KAIO 2M06A 1GFMA 1YS5A 1QJ8A 2O4VA 2X27X 3AAAA 3LK41 4UB6O 3UPGA 2WJRA 5D5DA 5KAFO 5G39A 4KR8A 4RJWA 3A2SX 2IWVA 4QQ1A 5ADXK 3KVDD 4GCSA 3HOLA 2Y0KA 1H6S1 2PRNA 3LK2A 3POUA 5E79O 3G7GA 4AZLA 3T0SA 2XE3A 2KXPA 5G26A 5JDPA 4FSPA 3UAQA 3GP6A 3SZVA 1BT9A 4D64A 3SY9A 5ADXL 1T1LA 7PRNA 4AYID 1QJ9A 4N59A 3VZWX 1GFOA 4C4VB 3SYBA 1OSMA 4LSHA 4AKMA 5G38A 1HXUA 3DA4A 3LK3A 3T24A 4AKRB 3QRCA 4GF4A 2Y7SA 2K4TA 2Y0LA 3FYXA 3QRAA 4O3YA 3T20A 3BS0A 2IWWA 3DZMA 4AYEC 2W80C 4BUMX 5G3AA 2ODJA 4PJ0O 2PORA 3VY8X 3AA0A 4G75A 1MM4A 4PR7A 3AA7A 1THQA 4AFKA 4GCQA 1E54A 3JCUO 2R8AA 4FZNA 4AYMC 3C5OA 4FRTA 3PQUA 4RLBA 3PQSA 4O3WA 3AA1A 3PORA 3PGUA 4LSIA 4N75A 5B5EO 1G90A 2KC0A 2KDYA 3VE1A 2F1VA 1IZNA 3PGRA 1HXTA 2XTRA 2MHLA 2XE1A 5TISO 3SY7A 4C69X 1MPFA 4JFBA 4KRAA 2LHFA 5H2FO 4KR4A 2MNHA 2R4LA 1ZHYA 1PHOA 3POXA 5DL5A 3DWNA 2N2MA 3BRYA 4FT6A 5DL6A 4GCPA 2XG6A 3POQA 3VY9X 5IYUA 1GFQA 4FSOA 3HW9A 5GTIO 3BRZA 4PUXA 5PRNA 3LK3B 4E1SA 1Q9FA 2ZFGA 4FMSA 1QJPA 2WJQA 3NJTA 4RLCA 4O3ZA 8PRNA 4O49A 4FZLA 2F1TA 3RBHA 5FVNA 4D5UA 3EMNX
chains in the Genus database with same CATH topology
2XE5A 2OMFA 3JTYA 2KZ7A 3AAEA 2Y2XA 3PRNA 4U9CA 1PRNA 3AA6A 4LSEA 3AAAB 1BH3A 2JMMA 4XNLA 1OPFA 3AA7B 5DL7A 4E1TA 2LFUA 6PRNA 2ZLDA 3VE2A 1ZHWA 1ZHTA 4O4XA 5T5FA 3LK2B 4FRXA 2FGRA 4FUVA 4RL9A 2FGQX 4F4BA 4O4UA 2GE4A 2KXPB 4AYDC 4LSFA 4FOZA 3HWBA 3UU2A 2XE2A 2W81C 2J4UP 4O3XB 2XMXA 1P4TA 2XTQA 4Z3TA 4G76A 2M07A 4FZMA 3V8UA 3O0EA 3HOEA 1GFNA 3WI4A 1BXWA 2K0LA 1MM5A 1Q9GA 5AFUK 4AKRA 4D65A 2Y0HA 3DA3A 3VZWX 3SYSA 1GFPA 2YPVA 4XNKA 2J1NA 3AA0B 3NSGA 3SZDA 3VZTX 1ZHZA 3TZGA 3VZUX 4AYNA 4GHBA 3WI5A 5AFUL 3LK42 4N58A 5GV0A 3K19A 2KZ7B 1HXXA 3AAEB 4FESA 4AUIA 3AA1B 3AA6B 1ORMA 2ERVA 5DL8A 2N2LA 1ZHXA 2YNKA 4JCHA 2QTKA 4B61A 5EE2A 1IZNB 4RJXA 2M06A 1GFMA 1YS5A 1QJ8A 2O4VA 2X27X 3AAAA 3LK41 3UPGA 5D5DA 4KR8A 4RJWA 3A2SX 4QQ1A 5ADXK 3KVDD 4GCSA 3HOLA 2Y0KA 1H6S1 2PRNA 3LK2A 3POUA 3G7GA 4AZLA 3T0SA 2XE3A 2KXPA 5G26A 5JDPA 4FSPA 3UAQA 3GP6A 3SZVA 1BT9A 4D64A 3SY9A 5ADXL 7PRNA 4AYID 1QJ9A 4N59A 1GFOA 3SYBA 1OSMA 4LSHA 4AKMA 1HXUA 3DA4A 3LK3A 3T24A 4AKRB 3QRCA 4GF4A 2Y7SA 2K4TA 2Y0LA 3FYXA 3QRAA 4O3YA 3T20A 4AYEC 2W80C 4BUMX 2ODJA 2PORA 3VY8X 3AA0A 4G75A 1MM4A 3AA7A 1THQA 4AFKA 4GCQA 1E54A 4FZNA 4AYMC 3C5OA 4FRTA 3PQUA 4RLBA 3PQSA 4O3WA 3AA1A 3PORA 4LSIA 1G90A 2KC0A 2KDYA 3VE1A 2F1VA 1IZNA 1HXTA 2XTRA 2MHLA 2XE1A 3SY7A 4C69X 1MPFA 4JFBA 4KRAA 2LHFA 4KR4A 2MNHA 3POXA 1ZHYA 1PHOA 5DL5A 2N2MA 4FT6A 5DL6A 4GCPA 2XG6A 3POQA 3VY9X 5IYUA 1GFQA 4FSOA 3HW9A 4PUXA 5PRNA 3LK3B 4E1SA 1Q9FA 2ZFGA 4FMSA 1QJPA 4RLCA 4O3ZA 8PRNA 4O49A 4FZLA 2F1TA 3RBHA 5FVNA 4D5UA 3EMNX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE5 A;  2OMF A;  3JTY A;  3PRN A;  2Y2X A;  1PRN A;  4LSE A;  1BH3 A;  1OPF A;  5DL7 A;  6PRN A;  2ZLD A;  4FRX A;  2FGR A;  2FGQ X;  4LSF A;  4FOZ A;  3HWB A;  3UU2 A;  2XE2 A;  2J4U P;  3O0E A;  1GFN A;  3WI4 A;  4D65 A;  2Y0H A;  3VZW X;  3SYS A;  1GFP A;  2J1N A;  3NSG A;  3SZD A;  3VZT X;  3VZU X;  3WI5 A;  3K19 A;  1HXX A;  4AUI A;  5DL8 A;  2QTK A;  4RJX A;  1GFM A;  3UPG A;  2O4V A;  4KR8 A;  4RJW A;  3A2S X;  4GCS A;  2Y0K A;  1H6S 1;  2PRN A;  3POU A;  3T0S A;  2XE3 A;  5JDP A;  4FSP A;  3SZV A;  4D64 A;  1BT9 A;  3SY9 A;  7PRN A;  1GFO A;  3SYB A;  1OSM A;  4LSH A;  1HXU A;  3T24 A;  3T20 A;  2K4T A;  2Y0L A;  3FYX A;  4BUM X;  2ODJ A;  2POR A;  3VY8 X;  4GCQ A;  1E54 A;  4FRT A;  3POR A;  4LSI A;  1HXT A;  2XE1 A;  3SY7 A;  4C69 X;  1MPF A;  4JFB A;  4KRA A;  4KR4 A;  3POX A;  1PHO A;  5DL5 A;  4FT6 A;  5DL6 A;  4GCP A;  2XG6 A;  3POQ A;  3VY9 X;  1GFQ A;  4FSO A;  3HW9 A;  5PRN A;  2ZFG A;  4FMS A;  8PRN A;  5FVN A;  4D5U A;  3EMN X; 
#chains in the Genus database with same CATH topology
 2XE5 A;  2OMF A;  3JTY A;  2KZ7 A;  3AAE A;  2Y2X A;  3PRN A;  2R89 A;  4U9C A;  1PRN A;  1S5L O;  3AA6 A;  4LSE A;  3AAA B;  1BH3 A;  2JMM A;  4XNL A;  2F1C X;  1OPF A;  3AA7 B;  4FQE A;  5DL7 A;  2LFU A;  4E1T A;  6PRN A;  4CTD A;  2ZLD A;  3VE2 A;  1ZHW A;  1ZHT A;  2JQY A;  4O4X A;  4K3B A;  5T5F A;  3LK2 B;  4FRX A;  2FGR A;  4FUV A;  1T16 A;  4RL9 A;  2FGQ X;  2X9K A;  4O4U A;  4F4B A;  3KZI O;  2GE4 A;  2KXP B;  4AYD C;  4LSF A;  4FOZ A;  3HWB A;  3UU2 A;  2W81 C;  2XE2 A;  2J4U P;  4O3X B;  2XMX A;  1P4T A;  5GTH O;  2XTQ A;  4Z3T A;  3A0H O;  4G76 A;  2M07 A;  4K3C A;  4FZM A;  3V8U A;  3O0E A;  3HOE A;  2AXT O;  4C4V A;  1GFN A;  3WI4 A;  1BXW A;  2K0L A;  1MM5 A;  1Q9G A;  5AFU K;  4AKR A;  4D65 A;  5B66 O;  2WVP A;  3PF1 A;  3PGS A;  2Y0H A;  3DA3 A;  4IL6 O;  4UB8 O;  3SYS A;  1GFP A;  2YPV A;  4XNK A;  2J1N A;  2R4N A;  3AA0 B;  3NSG A;  3SZD A;  3VZT X;  1ZHZ A;  3TZG A;  3VZU X;  3WU2 O;  4GHB A;  3WI5 A;  4AYN A;  3LK4 2;  4N58 A;  4C00 A;  5AFU L;  2R4P A;  4N74 A;  5GV0 A;  3K19 A;  2KZ7 B;  1HXX A;  3AAE B;  4FES A;  4AUI A;  3AA1 B;  3A0B O;  3AA6 B;  1ORM A;  2ERV A;  5DL8 A;  2N2L A;  1ZHX A;  2YNK A;  4JCH A;  2QTK A;  4B61 A;  2R4O A;  1IZN B;  4RJX A;  2R88 A;  3DWO X;  5EE2 A;  5KAI O;  2M06 A;  1GFM A;  1YS5 A;  1QJ8 A;  2O4V A;  2X27 X;  3AAA A;  3LK4 1;  4UB6 O;  3UPG A;  2WJR A;  5D5D A;  5KAF O;  5G39 A;  4KR8 A;  4RJW A;  3A2S X;  2IWV A;  4QQ1 A;  5ADX K;  3KVD D;  4GCS A;  3HOL A;  2Y0K A;  1H6S 1;  2PRN A;  3LK2 A;  3POU A;  5E79 O;  3G7G A;  4AZL A;  3T0S A;  2XE3 A;  2KXP A;  5G26 A;  5JDP A;  4FSP A;  3UAQ A;  3GP6 A;  3SZV A;  1BT9 A;  4D64 A;  3SY9 A;  5ADX L;  1T1L A;  7PRN A;  4AYI D;  1QJ9 A;  4N59 A;  3VZW X;  1GFO A;  4C4V B;  3SYB A;  1OSM A;  4LSH A;  4AKM A;  5G38 A;  1HXU A;  3DA4 A;  3LK3 A;  3T24 A;  4AKR B;  3QRC A;  4GF4 A;  2Y7S A;  2K4T A;  2Y0L A;  3FYX A;  3QRA A;  4O3Y A;  3T20 A;  3BS0 A;  2IWW A;  3DZM A;  4AYE C;  2W80 C;  4BUM X;  5G3A A;  2ODJ A;  4PJ0 O;  2POR A;  3VY8 X;  3AA0 A;  4G75 A;  1MM4 A;  4PR7 A;  3AA7 A;  1THQ A;  4AFK A;  4GCQ A;  1E54 A;  3JCU O;  2R8A A;  4FZN A;  4AYM C;  3C5O A;  4FRT A;  3PQU A;  4RLB A;  3PQS A;  4O3W A;  3AA1 A;  3POR A;  3PGU A;  4LSI A;  4N75 A;  5B5E O;  1G90 A;  2KC0 A;  2KDY A;  3VE1 A;  2F1V A;  1IZN A;  3PGR A;  1HXT A;  2XTR A;  2MHL A;  2XE1 A;  5TIS O;  3SY7 A;  4C69 X;  1MPF A;  4JFB A;  4KRA A;  2LHF A;  5H2F O;  4KR4 A;  2MNH A;  2R4L A;  1ZHY A;  1PHO A;  3POX A;  5DL5 A;  3DWN A;  2N2M A;  3BRY A;  4FT6 A;  5DL6 A;  4GCP A;  2XG6 A;  3POQ A;  3VY9 X;  5IYU A;  1GFQ A;  4FSO A;  3HW9 A;  5GTI O;  3BRZ A;  4PUX A;  5PRN A;  3LK3 B;  4E1S A;  1Q9F A;  2ZFG A;  4FMS A;  1QJP A;  2WJQ A;  3NJT A;  4RLC A;  4O3Z A;  8PRN A;  4O49 A;  4FZL A;  2F1T A;  3RBH A;  5FVN A;  4D5U A;  3EMN X; 
#chains in the Genus database with same CATH homology
 2XE5 A;  2OMF A;  3JTY A;  2KZ7 A;  3AAE A;  2Y2X A;  3PRN A;  4U9C A;  1PRN A;  3AA6 A;  4LSE A;  3AAA B;  1BH3 A;  2JMM A;  4XNL A;  1OPF A;  3AA7 B;  5DL7 A;  4E1T A;  2LFU A;  6PRN A;  2ZLD A;  3VE2 A;  1ZHW A;  1ZHT A;  4O4X A;  5T5F A;  3LK2 B;  4FRX A;  2FGR A;  4FUV A;  4RL9 A;  2FGQ X;  4F4B A;  4O4U A;  2GE4 A;  2KXP B;  4AYD C;  4LSF A;  4FOZ A;  3HWB A;  3UU2 A;  2XE2 A;  2W81 C;  2J4U P;  4O3X B;  2XMX A;  1P4T A;  2XTQ A;  4Z3T A;  4G76 A;  2M07 A;  4FZM A;  3V8U A;  3O0E A;  3HOE A;  1GFN A;  3WI4 A;  1BXW A;  2K0L A;  1MM5 A;  1Q9G A;  5AFU K;  4AKR A;  4D65 A;  2Y0H A;  3DA3 A;  3VZW X;  3SYS A;  1GFP A;  2YPV A;  4XNK A;  2J1N A;  3AA0 B;  3NSG A;  3SZD A;  3VZT X;  1ZHZ A;  3TZG A;  3VZU X;  4AYN A;  4GHB A;  3WI5 A;  5AFU L;  3LK4 2;  4N58 A;  5GV0 A;  3K19 A;  2KZ7 B;  1HXX A;  3AAE B;  4FES A;  4AUI A;  3AA1 B;  3AA6 B;  1ORM A;  2ERV A;  5DL8 A;  2N2L A;  1ZHX A;  2YNK A;  4JCH A;  2QTK A;  4B61 A;  5EE2 A;  1IZN B;  4RJX A;  2M06 A;  1GFM A;  1YS5 A;  1QJ8 A;  2O4V A;  2X27 X;  3AAA A;  3LK4 1;  3UPG A;  5D5D A;  4KR8 A;  4RJW A;  3A2S X;  4QQ1 A;  5ADX K;  3KVD D;  4GCS A;  3HOL A;  2Y0K A;  1H6S 1;  2PRN A;  3LK2 A;  3POU A;  3G7G A;  4AZL A;  3T0S A;  2XE3 A;  2KXP A;  5G26 A;  5JDP A;  4FSP A;  3UAQ A;  3GP6 A;  3SZV A;  1BT9 A;  4D64 A;  3SY9 A;  5ADX L;  7PRN A;  4AYI D;  1QJ9 A;  4N59 A;  1GFO A;  3SYB A;  1OSM A;  4LSH A;  4AKM A;  1HXU A;  3DA4 A;  3LK3 A;  3T24 A;  4AKR B;  3QRC A;  4GF4 A;  2Y7S A;  2K4T A;  2Y0L A;  3FYX A;  3QRA A;  4O3Y A;  3T20 A;  4AYE C;  2W80 C;  4BUM X;  2ODJ A;  2POR A;  3VY8 X;  3AA0 A;  4G75 A;  1MM4 A;  3AA7 A;  1THQ A;  4AFK A;  4GCQ A;  1E54 A;  4FZN A;  4AYM C;  3C5O A;  4FRT A;  3PQU A;  4RLB A;  3PQS A;  4O3W A;  3AA1 A;  3POR A;  4LSI A;  1G90 A;  2KC0 A;  2KDY A;  3VE1 A;  2F1V A;  1IZN A;  1HXT A;  2XTR A;  2MHL A;  2XE1 A;  3SY7 A;  4C69 X;  1MPF A;  4JFB A;  4KRA A;  2LHF A;  4KR4 A;  2MNH A;  3POX A;  1ZHY A;  1PHO A;  5DL5 A;  2N2M A;  4FT6 A;  5DL6 A;  4GCP A;  2XG6 A;  3POQ A;  3VY9 X;  5IYU A;  1GFQ A;  4FSO A;  3HW9 A;  4PUX A;  5PRN A;  3LK3 B;  4E1S A;  1Q9F A;  2ZFG A;  4FMS A;  1QJP A;  4RLC A;  4O3Z A;  8PRN A;  4O49 A;  4FZL A;  2F1T A;  3RBH A;  5FVN A;  4D5U A;  3EMN X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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